AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene027436

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027436.t1 MTR_4g046713 97.239 326 9 0 1 326 1 326 0.0 662
MS.gene027436.t1 MTR_2g088770 71.646 328 88 4 1 326 1 325 4.53e-176 490
MS.gene027436.t1 MTR_7g107520 53.067 326 147 4 1 326 1 320 4.47e-121 351
MS.gene027436.t1 MTR_3g092990 46.082 319 171 1 9 326 8 326 4.90e-98 293
MS.gene027436.t1 MTR_5g017860 43.533 317 177 2 11 326 11 326 3.33e-92 278
MS.gene027436.t1 MTR_2g029820 44.582 323 171 4 11 326 9 330 3.80e-92 278
MS.gene027436.t1 MTR_5g017850 42.587 317 180 2 11 326 11 326 1.57e-91 276
MS.gene027436.t1 MTR_5g022870 47.095 327 159 7 3 326 1 316 1.52e-90 273
MS.gene027436.t1 MTR_5g021060 48.344 302 153 3 27 326 30 330 2.03e-90 273
MS.gene027436.t1 MTR_2g029800 43.925 321 172 4 13 326 11 330 3.09e-90 273
MS.gene027436.t1 MTR_2g029815 44.514 319 172 4 12 326 13 330 6.13e-90 273
MS.gene027436.t1 MTR_1g101830 43.827 324 171 6 6 326 7 322 6.28e-89 269
MS.gene027436.t1 MTR_2g029850 44.237 321 171 5 13 326 11 330 2.11e-88 269
MS.gene027436.t1 MTR_2g040000 44.444 324 171 5 9 326 11 331 3.00e-88 268
MS.gene027436.t1 MTR_2g008710 44.954 327 168 5 7 326 4 325 3.02e-88 268
MS.gene027436.t1 MTR_1g054205 41.411 326 186 4 5 326 2 326 8.93e-88 266
MS.gene027436.t1 MTR_8g075100 45.246 305 161 4 22 326 21 319 1.49e-87 266
MS.gene027436.t1 MTR_2g028980 43.692 325 172 4 5 326 14 330 1.50e-86 264
MS.gene027436.t1 MTR_0155s0040 44.625 307 159 4 20 326 20 315 2.02e-86 263
MS.gene027436.t1 MTR_2g029740 43.598 328 174 5 9 326 4 330 2.10e-86 264
MS.gene027436.t1 MTR_7g093370 41.486 323 184 4 8 326 50 371 2.62e-86 264
MS.gene027436.t1 MTR_2g029830 44.805 308 166 3 22 326 23 329 6.84e-86 263
MS.gene027436.t1 MTR_3g092990 43.887 319 167 2 9 326 8 315 8.64e-86 261
MS.gene027436.t1 MTR_3g094650 41.214 313 173 4 13 322 14 318 1.72e-85 260
MS.gene027436.t1 MTR_1g077000 41.304 322 178 3 5 326 17 327 4.84e-85 259
MS.gene027436.t1 MTR_8g076820 45.695 302 161 3 27 326 30 330 7.66e-85 259
MS.gene027436.t1 MTR_4g125940 42.154 325 180 4 7 326 8 329 4.40e-84 257
MS.gene027436.t1 MTR_2g029560 42.202 327 184 5 3 326 1 325 6.28e-84 257
MS.gene027436.t1 MTR_1g038680 45.724 304 159 5 28 326 30 332 1.26e-83 256
MS.gene027436.t1 MTR_4g114210 42.236 322 176 4 10 326 4 320 1.32e-83 255
MS.gene027436.t1 MTR_2g029750 42.598 331 182 4 3 326 1 330 8.19e-83 254
MS.gene027436.t1 MTR_3g072190 42.547 322 174 4 8 326 5 318 7.99e-82 251
MS.gene027436.t1 MTR_2g029860 42.368 321 181 3 9 326 11 330 1.08e-80 249
MS.gene027436.t1 MTR_3g466200 41.916 334 172 8 1 326 1 320 1.54e-80 248
MS.gene027436.t1 MTR_2g029730 42.320 319 179 4 11 326 10 326 3.79e-80 248
MS.gene027436.t1 MTR_7g086820 41.447 304 167 4 25 326 18 312 4.43e-80 246
MS.gene027436.t1 MTR_1g025980 41.009 317 178 4 11 325 8 317 1.13e-79 245
MS.gene027436.t1 MTR_8g062780 39.634 328 190 5 3 326 1 324 1.73e-79 245
MS.gene027436.t1 MTR_2g084080 39.385 325 186 4 5 326 1 317 2.85e-79 244
MS.gene027436.t1 MTR_6g027440 40.187 321 180 5 10 326 2 314 2.90e-79 244
MS.gene027436.t1 MTR_2g084110 39.688 320 182 4 8 326 8 317 8.51e-79 243
MS.gene027436.t1 MTR_5g074970 40.312 320 178 5 12 326 15 326 1.69e-78 243
MS.gene027436.t1 MTR_7g072510 38.365 318 187 3 10 326 3 312 2.07e-78 242
MS.gene027436.t1 MTR_1g086320 40.498 321 185 4 11 326 14 333 2.16e-78 243
MS.gene027436.t1 MTR_2g029910 42.236 322 177 6 13 326 12 332 2.94e-78 243
MS.gene027436.t1 MTR_7g029030 41.049 324 182 5 5 326 4 320 8.32e-78 241
MS.gene027436.t1 MTR_4g029170 39.818 329 185 6 3 326 1 321 9.77e-78 241
MS.gene027436.t1 MTR_4g083710 39.571 326 182 6 9 326 6 324 1.25e-77 240
MS.gene027436.t1 MTR_7g072480 40.252 318 181 3 10 326 7 316 3.25e-77 239
MS.gene027436.t1 MTR_2g437770 44.884 303 153 7 27 326 50 341 4.09e-77 239
MS.gene027436.t1 MTR_1g086490 38.415 328 189 4 11 326 14 340 4.33e-77 239
MS.gene027436.t1 MTR_4g125940 45.091 275 143 4 57 326 3 274 7.04e-77 237
MS.gene027436.t1 MTR_3g094670 40.952 315 175 4 11 322 12 318 1.63e-76 238
MS.gene027436.t1 MTR_4g087965 42.105 304 169 5 26 323 41 343 2.41e-76 238
MS.gene027436.t1 MTR_1g115900 39.755 327 181 8 5 326 6 321 2.77e-76 237
MS.gene027436.t1 MTR_2g084020 41.368 307 170 4 22 326 20 318 4.39e-76 236
MS.gene027436.t1 MTR_7g086870 39.735 302 172 4 25 326 20 311 8.42e-76 235
MS.gene027436.t1 MTR_5g083860 40.498 321 178 4 12 326 12 325 1.32e-75 235
MS.gene027436.t1 MTR_4g030890 40.584 308 178 4 20 326 93 396 2.87e-75 237
MS.gene027436.t1 MTR_4g029200 37.126 334 183 4 12 326 13 338 3.64e-75 234
MS.gene027436.t1 MTR_5g014100 43.709 302 164 4 31 326 30 331 4.12e-75 234
MS.gene027436.t1 MTR_5g016010 40.752 319 184 2 11 325 11 328 4.35e-75 234
MS.gene027436.t1 MTR_4g029190 37.910 335 181 5 12 326 13 340 1.54e-74 233
MS.gene027436.t1 MTR_2g084010 41.368 307 170 4 22 326 20 318 1.72e-74 232
MS.gene027436.t1 MTR_4g122640 40.717 307 175 5 23 326 34 336 4.44e-74 232
MS.gene027436.t1 MTR_5g049280 39.744 312 179 7 22 326 28 337 5.98e-74 231
MS.gene027436.t1 MTR_2g084090 39.375 320 184 3 8 326 8 318 9.00e-74 230
MS.gene027436.t1 MTR_4g029180 40.468 299 167 5 31 326 31 321 1.20e-73 230
MS.gene027436.t1 MTR_4g074995 39.577 331 172 7 1 326 1 308 2.03e-73 229
MS.gene027436.t1 MTR_5g074740 40.432 324 178 8 9 326 7 321 8.89e-73 228
MS.gene027436.t1 MTR_3g094630 40.125 319 180 4 11 326 12 322 9.72e-73 228
MS.gene027436.t1 MTR_4g031140 39.016 305 181 4 23 326 24 324 1.02e-72 228
MS.gene027436.t1 MTR_1g022970 41.914 303 172 3 27 326 46 347 1.26e-72 228
MS.gene027436.t1 MTR_5g074760 40.123 324 179 8 9 326 7 321 1.56e-72 227
MS.gene027436.t1 MTR_4g133800 41.611 298 165 5 30 326 44 333 9.35e-72 226
MS.gene027436.t1 MTR_4g095450 40.252 318 178 4 12 325 14 323 1.44e-71 225
MS.gene027436.t1 MTR_1g090760 37.152 323 197 5 9 326 9 330 1.98e-71 225
MS.gene027436.t1 MTR_2g084000 37.695 321 190 4 8 326 7 319 3.43e-71 224
MS.gene027436.t1 MTR_1g009750 40.909 330 187 5 3 326 1 328 8.93e-71 223
MS.gene027436.t1 MTR_2g008160 40.705 312 175 5 20 326 17 323 2.55e-70 221
MS.gene027436.t1 MTR_4g127670 40.264 303 177 3 26 326 23 323 5.62e-70 221
MS.gene027436.t1 MTR_7g026990 37.730 326 193 4 2 326 6 322 7.76e-70 220
MS.gene027436.t1 MTR_3g467600 40.606 330 177 9 5 326 6 324 5.52e-69 218
MS.gene027436.t1 MTR_2g008730 40.061 327 160 6 7 326 4 301 8.68e-69 217
MS.gene027436.t1 MTR_2g029830 44.961 258 138 3 72 326 5 261 1.73e-68 216
MS.gene027436.t1 MTR_3g466180 37.309 327 196 3 1 326 5 323 3.21e-68 216
MS.gene027436.t1 MTR_4g074990 38.125 320 170 6 12 326 9 305 1.44e-67 214
MS.gene027436.t1 MTR_5g074710 37.952 332 189 9 1 326 1 321 5.42e-67 213
MS.gene027436.t1 MTR_3g072190 43.969 257 135 3 71 326 3 251 2.13e-66 209
MS.gene027436.t1 MTR_3g105790 38.344 326 179 5 11 326 9 322 1.77e-65 209
MS.gene027436.t1 MTR_6g043460 34.743 331 198 6 1 322 3 324 3.21e-65 209
MS.gene027436.t1 MTR_2g099175 38.037 326 189 6 9 326 15 335 7.09e-65 208
MS.gene027436.t1 MTR_0286s0010 36.562 320 194 6 12 326 19 334 2.02e-62 202
MS.gene027436.t1 MTR_6g008075 36.562 320 194 6 12 326 19 334 2.02e-62 202
MS.gene027436.t1 MTR_1g009750 38.650 326 183 6 3 326 1 311 3.41e-62 200
MS.gene027436.t1 MTR_5g074860 36.615 325 187 8 6 322 8 321 7.47e-62 200
MS.gene027436.t1 MTR_6g043240 36.607 336 187 7 5 326 8 331 1.28e-61 200
MS.gene027436.t1 MTR_2g067440 35.258 329 181 5 25 323 58 384 5.33e-61 199
MS.gene027436.t1 MTR_4g132110 35.786 299 185 2 30 326 35 328 9.21e-61 197
MS.gene027436.t1 MTR_6g043280 35.093 322 193 7 11 326 21 332 1.80e-60 196
MS.gene027436.t1 MTR_4g074980 36.875 320 163 6 11 326 10 294 2.03e-59 192
MS.gene027436.t1 MTR_2g077990 36.254 331 178 5 25 323 74 403 2.42e-59 196
MS.gene027436.t1 MTR_2g078610 35.347 331 181 6 25 323 74 403 2.56e-59 196
MS.gene027436.t1 MTR_4g074980 42.460 252 133 5 11 258 10 253 5.54e-59 190
MS.gene027436.t1 MTR_4g132110 35.197 304 185 3 30 326 35 333 2.70e-58 191
MS.gene027436.t1 MTR_1g066710 35.082 305 189 3 25 326 25 323 2.85e-58 191
MS.gene027436.t1 MTR_1g066380 34.951 309 184 6 25 326 25 323 1.00e-56 187
MS.gene027436.t1 MTR_1g066640 34.098 305 192 3 25 326 25 323 2.89e-56 186
MS.gene027436.t1 MTR_2g008160 36.538 312 153 5 20 326 17 288 3.80e-56 184
MS.gene027436.t1 MTR_1g066680 34.426 305 190 4 25 326 25 322 7.14e-56 184
MS.gene027436.t1 MTR_2g078280 36.478 318 169 5 25 310 74 390 2.86e-55 185
MS.gene027436.t1 MTR_4g132490 33.333 321 203 4 11 326 13 327 6.51e-55 182
MS.gene027436.t1 MTR_5g033470 35.256 312 195 5 21 326 67 377 1.66e-54 182
MS.gene027436.t1 MTR_2g067450 36.928 306 183 6 25 325 9 309 2.05e-54 180
MS.gene027436.t1 MTR_0147s0010 34.069 317 175 5 27 323 77 379 6.96e-53 178
MS.gene027436.t1 MTR_2g008160 46.111 180 94 2 20 199 17 193 2.35e-47 159
MS.gene027436.t1 MTR_3g105790 37.549 253 139 4 84 326 3 246 3.85e-45 154
MS.gene027436.t1 MTR_5g074860 31.579 323 167 7 6 322 8 282 2.22e-41 145
MS.gene027436.t1 MTR_1g066380 32.700 263 160 6 71 326 3 255 3.49e-41 144
MS.gene027436.t1 MTR_5g074700 36.481 233 124 8 97 326 3 214 2.61e-36 130
MS.gene027436.t1 MTR_2g029880 38.776 196 107 5 133 326 4 188 8.28e-35 126
MS.gene027436.t1 MTR_7g072490 34.274 248 100 5 73 319 2 187 3.47e-32 119
MS.gene027436.t1 MTR_3g072210 36.269 193 113 4 136 326 54 238 1.03e-31 119
MS.gene027436.t1 MTR_3g072260 45.833 144 72 4 5 144 1 142 1.75e-29 110
MS.gene027436.t1 MTR_1g089005 45.669 127 56 2 12 132 7 126 5.90e-29 109
MS.gene027436.t1 MTR_7g086790 32.995 197 106 5 74 268 17 189 7.42e-24 97.1
MS.gene027436.t1 MTR_6g048160 61.765 68 23 1 66 133 22 86 1.65e-22 90.1
MS.gene027436.t1 MTR_2g077980 27.915 283 164 8 79 323 1 281 3.39e-22 94.7
MS.gene027436.t1 MTR_7g086810 42.975 121 44 1 25 145 4 99 4.18e-21 90.5
MS.gene027436.t1 MTR_4g114220 50.000 80 31 2 55 134 31 101 1.80e-20 86.3
MS.gene027436.t1 MTR_5g058120 34.969 163 92 4 161 322 6 155 1.84e-20 89.4
MS.gene027436.t1 MTR_2g078560 24.503 302 179 6 71 325 20 319 1.74e-18 85.1
MS.gene027436.t1 MTR_7g107500 43.902 82 45 1 245 326 17 97 1.51e-17 77.0
MS.gene027436.t1 MTR_4g012865 50.000 68 34 0 27 94 77 144 1.44e-15 73.2
MS.gene027436.t1 MTR_6g071110 45.745 94 39 3 93 186 80 161 4.56e-15 72.0
MS.gene027436.t1 MTR_7g086785 35.897 117 68 2 72 181 3 119 9.04e-15 70.9
MS.gene027436.t1 MTR_2g029930 33.333 108 42 4 13 104 1 94 5.48e-12 62.0
MS.gene027436.t1 MTR_4g031040 31.746 126 68 3 134 259 23 130 2.74e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene027436.t1 AT4G11290 61.059 321 117 3 11 326 9 326 5.25e-145 412
MS.gene027436.t1 AT1G05260 62.179 312 116 2 16 326 15 325 6.12e-145 412
MS.gene027436.t1 AT3G21770 59.223 309 124 2 16 323 18 325 7.15e-135 386
MS.gene027436.t1 AT5G15180 53.495 329 147 6 1 326 4 329 5.16e-121 351
MS.gene027436.t1 AT3G01190 52.960 321 142 6 10 326 6 321 4.43e-115 336
MS.gene027436.t1 AT1G05240 50.000 302 139 5 31 326 30 325 6.97e-104 307
MS.gene027436.t1 AT1G05250 50.000 302 139 5 31 326 30 325 6.97e-104 307
MS.gene027436.t1 AT2G18150 44.481 308 168 3 21 326 30 336 4.33e-91 275
MS.gene027436.t1 AT2G39040 46.965 313 157 7 21 326 40 350 1.70e-87 266
MS.gene027436.t1 AT5G51890 42.006 319 174 5 12 326 11 322 7.09e-87 264
MS.gene027436.t1 AT2G18140 43.344 323 179 4 7 326 14 335 1.07e-86 264
MS.gene027436.t1 AT4G36430 42.453 318 177 4 14 326 14 330 1.53e-86 263
MS.gene027436.t1 AT2G41480 42.643 333 179 6 1 326 1 328 1.64e-86 263
MS.gene027436.t1 AT5G19890 43.465 329 172 7 3 326 8 327 5.19e-86 262
MS.gene027436.t1 AT3G03670 41.195 318 185 2 9 326 6 321 1.73e-85 260
MS.gene027436.t1 AT4G33420 43.218 317 167 5 12 326 20 325 2.28e-85 260
MS.gene027436.t1 AT5G17820 42.357 314 171 4 13 326 10 313 3.97e-85 259
MS.gene027436.t1 AT3G32980 42.587 317 176 4 15 326 19 334 4.22e-85 260
MS.gene027436.t1 AT5G14130 41.509 318 179 5 12 326 17 330 1.06e-84 259
MS.gene027436.t1 AT4G33420 43.218 317 167 5 12 326 67 372 1.30e-84 260
MS.gene027436.t1 AT5G42180 42.444 311 174 3 12 322 8 313 1.32e-84 258
MS.gene027436.t1 AT5G39580 42.378 328 176 7 3 326 1 319 1.95e-84 258
MS.gene027436.t1 AT5G17820 42.154 325 177 5 2 326 53 366 3.13e-84 259
MS.gene027436.t1 AT5G14130 41.509 318 179 5 12 326 58 371 4.10e-84 258
MS.gene027436.t1 AT2G38390 40.312 320 186 4 11 326 15 333 5.97e-84 257
MS.gene027436.t1 AT3G50990 45.928 307 163 3 22 326 36 341 6.16e-84 257
MS.gene027436.t1 AT5G06720 40.566 318 185 3 12 326 17 333 6.76e-84 257
MS.gene027436.t1 AT5G66390 43.810 315 174 3 14 326 20 333 1.04e-83 256
MS.gene027436.t1 AT5G64120 40.719 334 182 6 3 326 1 328 1.38e-83 256
MS.gene027436.t1 AT2G38380 40.938 320 184 4 11 326 15 333 4.68e-83 255
MS.gene027436.t1 AT4G08770 43.269 312 165 6 23 326 20 327 4.86e-83 255
MS.gene027436.t1 AT3G49110 41.846 325 181 5 9 326 13 336 4.12e-82 253
MS.gene027436.t1 AT3G49120 41.640 317 179 4 15 326 20 335 8.63e-82 252
MS.gene027436.t1 AT5G06730 39.308 318 189 4 12 326 18 334 3.41e-81 251
MS.gene027436.t1 AT2G24800 41.311 305 172 3 25 326 29 329 1.70e-79 245
MS.gene027436.t1 AT5G64100 43.333 300 159 5 30 326 40 331 4.25e-79 244
MS.gene027436.t1 AT1G14550 41.121 321 179 5 9 326 8 321 4.83e-79 244
MS.gene027436.t1 AT4G37530 41.801 311 176 2 20 326 20 329 5.09e-78 241
MS.gene027436.t1 AT1G44970 42.765 311 174 3 19 326 37 346 6.33e-78 242
MS.gene027436.t1 AT4G08780 41.987 312 169 6 23 326 20 327 2.37e-77 240
MS.gene027436.t1 AT1G71695 42.904 303 163 5 27 326 44 339 2.55e-77 241
MS.gene027436.t1 AT2G18980 42.857 329 177 5 3 326 1 323 3.24e-77 239
MS.gene027436.t1 AT1G49570 41.118 304 174 4 25 324 46 348 3.85e-76 238
MS.gene027436.t1 AT5G05340 40.984 305 171 3 24 326 27 324 6.35e-76 236
MS.gene027436.t1 AT1G14540 39.062 320 185 5 9 326 4 315 4.74e-75 233
MS.gene027436.t1 AT4G31760 39.623 318 183 5 12 326 15 326 4.78e-75 234
MS.gene027436.t1 AT5G19880 38.788 330 195 5 3 326 1 329 6.78e-75 233
MS.gene027436.t1 AT4G25980 39.564 321 184 5 12 326 10 326 6.54e-74 231
MS.gene027436.t1 AT5G58400 41.083 314 176 5 12 322 14 321 8.88e-74 231
MS.gene027436.t1 AT4G16270 41.667 300 168 6 30 326 53 348 8.96e-74 231
MS.gene027436.t1 AT1G77100 41.987 312 167 6 20 326 17 319 1.26e-73 230
MS.gene027436.t1 AT4G26010 39.241 316 176 6 12 326 9 309 1.51e-73 229
MS.gene027436.t1 AT4G37520 40.523 306 177 2 25 326 25 329 2.40e-73 229
MS.gene027436.t1 AT4G26010 39.241 316 176 6 12 326 37 337 2.97e-73 229
MS.gene027436.t1 AT2G22420 37.855 317 191 5 11 326 8 319 3.70e-73 229
MS.gene027436.t1 AT3G49960 41.049 324 182 4 11 326 7 329 1.37e-72 228
MS.gene027436.t1 AT2G35380 40.000 330 176 5 11 326 14 335 3.08e-72 227
MS.gene027436.t1 AT5G64110 39.667 300 172 4 30 326 37 330 5.09e-72 226
MS.gene027436.t1 AT5G67400 40.777 309 178 2 22 326 22 329 1.89e-71 225
MS.gene027436.t1 AT4G37520 40.523 306 174 3 25 326 25 326 4.71e-71 224
MS.gene027436.t1 AT4G33870 36.585 328 172 3 31 323 72 398 1.38e-70 225
MS.gene027436.t1 AT4G17690 38.141 312 184 4 18 326 17 322 5.07e-70 221
MS.gene027436.t1 AT1G68850 38.411 302 180 4 31 326 34 335 9.37e-70 221
MS.gene027436.t1 AT1G34510 37.654 324 184 7 4 326 3 309 3.51e-69 218
MS.gene027436.t1 AT2G34060 39.474 304 179 3 24 322 39 342 3.92e-69 219
MS.gene027436.t1 AT5G22410 40.063 317 178 7 11 322 12 321 5.47e-69 218
MS.gene027436.t1 AT4G30170 39.869 306 175 3 25 326 25 325 1.47e-68 217
MS.gene027436.t1 AT5G58390 38.629 321 180 6 9 322 2 312 1.53e-68 217
MS.gene027436.t1 AT4G37530 43.346 263 144 2 20 278 20 281 2.18e-67 213
MS.gene027436.t1 AT1G30870 41.472 299 164 6 31 326 55 345 1.40e-66 213
MS.gene027436.t1 AT5G47000 37.538 325 186 7 11 326 14 330 1.02e-65 210
MS.gene027436.t1 AT5G40150 37.134 307 186 2 22 326 27 328 2.97e-65 209
MS.gene027436.t1 AT4G21960 35.435 333 200 6 3 326 1 327 5.45e-65 208
MS.gene027436.t1 AT1G24110 35.443 316 194 4 14 322 6 318 1.57e-63 204
MS.gene027436.t1 AT2G43480 36.943 314 187 4 19 326 27 335 1.89e-61 199
MS.gene027436.t1 AT3G28200 35.505 307 190 2 22 326 16 316 3.50e-61 198
MS.gene027436.t1 AT5G24070 34.897 341 199 6 3 326 1 335 4.69e-61 198
MS.gene027436.t1 AT2G37130 33.225 307 195 4 24 326 27 327 1.65e-53 178
MS.gene027436.t1 AT3G17070 32.628 331 199 7 7 322 14 335 5.70e-53 177
MS.gene027436.t1 AT2G37130 33.555 301 190 4 30 326 2 296 6.63e-53 176
MS.gene027436.t1 AT5G39580 44.279 201 102 4 3 200 1 194 1.48e-48 163
MS.gene027436.t1 AT2G35380 38.735 253 133 5 88 326 3 247 1.48e-48 163
MS.gene027436.t1 AT4G25980 45.665 173 91 2 21 193 65 234 2.93e-45 155
MS.gene027436.t1 AT2G24800 45.509 167 88 1 25 191 29 192 7.84e-43 148
MS.gene027436.t1 AT3G17070 30.824 279 172 7 55 322 4 272 5.89e-39 139
MS.gene027436.t1 AT3G42570 33.019 106 70 1 89 193 44 149 1.16e-13 68.2

Find 59 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCCAATTACATGAAAA+TGG 0.170365 4.2:+53841614 None:intergenic
ATTTGTCTTATAGCAATAAT+TGG 0.198586 4.2:+53841666 MS.gene027436:CDS
AATGACCTAGTCTTGCTTTC+CGG 0.250529 4.2:+53843886 MS.gene027436:CDS
ATTTGCAGGGTGGGCCTTAT+TGG 0.254925 4.2:+53843737 MS.gene027436:intron
AAAACAATTTGTTCAGCTTT+GGG 0.265521 4.2:-53841735 None:intergenic
CAAAACAATTTGTTCAGCTT+TGG 0.265636 4.2:-53841736 None:intergenic
GCATATTCACCGTCTAGATC+TGG 0.345112 4.2:-53844355 None:intergenic
TAGCCACGAAGTGTAAGATT+TGG 0.347680 4.2:-53842162 None:intergenic
GGAAGGTTCCAACAGGTAGA+AGG 0.383934 4.2:+53843758 MS.gene027436:CDS
GGGAGAATTAATGTCAAGAT+TGG 0.389587 4.2:+53844619 MS.gene027436:CDS
TCAAATGTATTACGACTTCC+AGG 0.390217 4.2:-53844442 None:intergenic
TCAAACCACACTTATTGAAA+TGG 0.390578 4.2:+53844417 MS.gene027436:CDS
AGTCGTAATACATTTGATCT+TGG 0.396009 4.2:+53844448 MS.gene027436:CDS
ACTGTCCTCCTAACACTCTT+TGG 0.396163 4.2:+53843844 MS.gene027436:CDS
CAACATTGCCAAAGAGTGTT+AGG 0.396433 4.2:-53843852 None:intergenic
TAAGCAATGCAGCATCTGAT+TGG 0.403489 4.2:-53844507 None:intergenic
ATTTCAGGTGCACACACAAT+TGG 0.433140 4.2:+53844268 MS.gene027436:intron
CTAACACTCTTTGGCAATGT+TGG 0.442479 4.2:+53843853 MS.gene027436:CDS
ACAAACCAATCAAGCTGAAA+AGG 0.448336 4.2:+53842131 MS.gene027436:CDS
TTAAAACCTTGAAGTAACTC+TGG 0.458221 4.2:-53841641 None:intergenic
ATTCCAAATCTTACACTTCG+TGG 0.463102 4.2:+53842159 MS.gene027436:CDS
CCTGTTGGAACCTTCCAATA+AGG 0.463341 4.2:-53843751 None:intergenic
GGGAATCCAGAGTTACTTCA+AGG 0.464095 4.2:+53841635 MS.gene027436:CDS
ATACCTTGACAAAGCAATCA+TGG 0.472713 4.2:-53841824 None:intergenic
TCTGCCAATTACATGAAAAT+GGG 0.474216 4.2:+53841615 None:intergenic
GCAGGGTGGGCCTTATTGGA+AGG 0.485522 4.2:+53843741 MS.gene027436:intron
CAAGCAAGTAGTTAAGAGAA+GGG 0.488778 4.2:+53844477 MS.gene027436:CDS
TCAAGCAAGTAGTTAAGAGA+AGG 0.493471 4.2:+53844476 MS.gene027436:CDS
CATATTCACCGTCTAGATCT+GGG 0.504303 4.2:-53844354 None:intergenic
CCTTATTGGAAGGTTCCAAC+AGG 0.506222 4.2:+53843751 MS.gene027436:CDS
AGGACAGTGAGGTTGTGAAA+TGG 0.507765 4.2:-53843829 None:intergenic
TGTTGAAATTGATGAGCAAT+GGG 0.507805 4.2:-53844296 None:intergenic
TAATGAATTTGGCAAGTCCA+TGG 0.508920 4.2:+53844588 MS.gene027436:CDS
GGAGAATTAATGTCAAGATT+GGG 0.509355 4.2:+53844620 MS.gene027436:CDS
TTTCCATGATTGCTTTGTCA+AGG 0.540216 4.2:+53841821 MS.gene027436:CDS
ACTCCATCCCTTCTACCTGT+TGG 0.547709 4.2:-53843766 None:intergenic
GTGAGGTTGTGAAATGGAGC+AGG 0.547960 4.2:-53843823 None:intergenic
GAAGGTTCCAACAGGTAGAA+GGG 0.566125 4.2:+53843759 MS.gene027436:CDS
ACTCATGCTCAATTGCAGCC+AGG 0.571279 4.2:+53841693 MS.gene027436:CDS
TTGTTGAAATTGATGAGCAA+TGG 0.572249 4.2:-53844297 None:intergenic
GTTCCAACAGGTAGAAGGGA+TGG 0.572964 4.2:+53843763 MS.gene027436:CDS
AGGGTCCATTTCAATAAGTG+TGG 0.580715 4.2:-53844422 None:intergenic
AATGTCAAGATTGGGACTGA+GGG 0.584429 4.2:+53844628 MS.gene027436:CDS
ACACTTATTGAAATGGACCC+TGG 0.584876 4.2:+53844424 MS.gene027436:CDS
AAGCAAGTAGTTAAGAGAAG+GGG 0.586770 4.2:+53844478 MS.gene027436:CDS
TCAGCACAAGAGACAACACC+AGG 0.593653 4.2:-53842228 None:intergenic
AAACAATTTGTTCAGCTTTG+GGG 0.596812 4.2:-53841734 None:intergenic
TAATGTCAAGATTGGGACTG+AGG 0.599035 4.2:+53844627 MS.gene027436:CDS
ATGAGTGCAGCTGCTAGTGA+TGG 0.611781 4.2:-53841789 None:intergenic
GCTGCTAGTGATGGTACACT+AGG 0.627545 4.2:-53841780 None:intergenic
GCATACCGGAAAGCAAGACT+AGG 0.630686 4.2:-53843891 None:intergenic
ATTTCAGGGATGTGATGCAT+CGG 0.645633 4.2:+53842092 MS.gene027436:intron
GATCAAGACCCAGATCTAGA+CGG 0.657297 4.2:+53844346 MS.gene027436:CDS
GGTTGTGAAATGGAGCAGGA+AGG 0.663275 4.2:-53843819 None:intergenic
CATTGCCAAAGAGTGTTAGG+AGG 0.665435 4.2:-53843849 None:intergenic
AGAGTGTTAGGAGGACAGTG+AGG 0.689613 4.2:-53843840 None:intergenic
CAAATGTATTACGACTTCCA+GGG 0.691933 4.2:-53844441 None:intergenic
ATTGCTCATCAATTTCAACA+AGG 0.726588 4.2:+53844299 MS.gene027436:CDS
CAGCACAAGAGACAACACCA+GGG 0.782900 4.2:-53842227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATTCTTCAAATATT+TGG - chr4.2:53842366-53842385 None:intergenic 10.0%
!! ATGAAATTTATATAAAAGTT+GGG + chr4.2:53842868-53842887 MS.gene027436:intron 10.0%
!! ATTAGATAAATAATGTTATT+TGG + chr4.2:53843143-53843162 MS.gene027436:intron 10.0%
!! TAATTTAAGAAAATAAAAGT+AGG + chr4.2:53844085-53844104 MS.gene027436:intron 10.0%
!! TATGAAATTTATATAAAAGT+TGG + chr4.2:53842867-53842886 MS.gene027436:intron 10.0%
!!! TTACTTTTTTTTTAAAAACT+CGG - chr4.2:53844132-53844151 None:intergenic 10.0%
!! AATATATTTAAAAACATTCC+TGG + chr4.2:53843471-53843490 MS.gene027436:intron 15.0%
!! ATATATTTAAAAACATTCCT+GGG + chr4.2:53843472-53843491 MS.gene027436:intron 15.0%
!! ATTTATGTATTATGTTCTAT+GGG + chr4.2:53843182-53843201 MS.gene027436:intron 15.0%
!! GAAAAATTCTTTAATGAATT+TGG + chr4.2:53844577-53844596 MS.gene027436:CDS 15.0%
!! GTTTAGTATGTATAATTATT+TGG + chr4.2:53843660-53843679 MS.gene027436:intron 15.0%
!! TGAAATTTATATAAAAGTTG+GGG + chr4.2:53842869-53842888 MS.gene027436:intron 15.0%
!!! CAAAACACTTTAAAATATTT+TGG + chr4.2:53842992-53843011 MS.gene027436:intron 15.0%
!!! CAAAATATTTTAAAGTGTTT+TGG - chr4.2:53842994-53843013 None:intergenic 15.0%
!!! GTATAATTATTTGGTTTTAT+AGG + chr4.2:53843669-53843688 MS.gene027436:intron 15.0%
!! AAATATACATCATTGTAAAC+TGG + chr4.2:53842401-53842420 MS.gene027436:intron 20.0%
!! AAATTTATATAAAAGTTGGG+GGG + chr4.2:53842871-53842890 MS.gene027436:intron 20.0%
!! ATTTGTCTTATAGCAATAAT+TGG + chr4.2:53841666-53841685 MS.gene027436:CDS 20.0%
!! CATTTATGTATTATGTTCTA+TGG + chr4.2:53843181-53843200 MS.gene027436:intron 20.0%
!! CTGATATGCTATATATATTT+GGG + chr4.2:53843082-53843101 MS.gene027436:intron 20.0%
!! GAAATTTATATAAAAGTTGG+GGG + chr4.2:53842870-53842889 MS.gene027436:intron 20.0%
!! TAATAAAAAAAAAAGGTCCT+GGG - chr4.2:53842570-53842589 None:intergenic 20.0%
!! TACAAGACATAAAACAAATA+GGG - chr4.2:53843605-53843624 None:intergenic 20.0%
!! TCTGATATGCTATATATATT+TGG + chr4.2:53843081-53843100 MS.gene027436:intron 20.0%
!! TTAATAAAAAAAAAAGGTCC+TGG - chr4.2:53842571-53842590 None:intergenic 20.0%
!! TTAATAAAAAAAAAGGTCCT+GGG - chr4.2:53842486-53842505 None:intergenic 20.0%
!! TTACAAGACATAAAACAAAT+AGG - chr4.2:53843606-53843625 None:intergenic 20.0%
!! TTTAATAAAAAAAAAGGTCC+TGG - chr4.2:53842487-53842506 None:intergenic 20.0%
!! TTTATGTATTATGTTCTATG+GGG + chr4.2:53843183-53843202 MS.gene027436:intron 20.0%
!!! AATATTTTAAAGTGTTTTGG+AGG - chr4.2:53842991-53843010 None:intergenic 20.0%
!!! ATATTTTGGATTTTTGAATC+TGG + chr4.2:53843006-53843025 MS.gene027436:intron 20.0%
!!! TATTTTGGATTTTTGAATCT+GGG + chr4.2:53843007-53843026 MS.gene027436:intron 20.0%
! AACTAATACATATGCATTTC+AGG + chr4.2:53842077-53842096 MS.gene027436:intron 25.0%
! AAGGATTAAATTTGCAATCA+TGG - chr4.2:53843570-53843589 None:intergenic 25.0%
! AATAAAAAAAGCTGTCAGAT+GGG - chr4.2:53843977-53843996 None:intergenic 25.0%
! ACCAAAACTATCATTATTTC+AGG + chr4.2:53844253-53844272 MS.gene027436:intron 25.0%
! ACTAATACATATGCATTTCA+GGG + chr4.2:53842078-53842097 MS.gene027436:intron 25.0%
! AGGATTAAATTTGCAATCAT+GGG - chr4.2:53843569-53843588 None:intergenic 25.0%
! AGTTAAAATAGTGTGATAGT+GGG - chr4.2:53843421-53843440 None:intergenic 25.0%
! AGTTATCATAAATTATGCCT+AGG + chr4.2:53843281-53843300 MS.gene027436:intron 25.0%
! ATGATAACTTGAAACAAACA+AGG - chr4.2:53843270-53843289 None:intergenic 25.0%
! TAGTTAAAATAGTGTGATAG+TGG - chr4.2:53843422-53843441 None:intergenic 25.0%
! TGATAACTTGAAACAAACAA+GGG - chr4.2:53843269-53843288 None:intergenic 25.0%
! TTATGTATTATGTTCTATGG+GGG + chr4.2:53843184-53843203 MS.gene027436:intron 25.0%
! TTTATTCCCATGTTAAAGTA+GGG + chr4.2:53843350-53843369 MS.gene027436:intron 25.0%
!! AAAACAATTTGTTCAGCTTT+GGG - chr4.2:53841738-53841757 None:intergenic 25.0%
!! ACAAGGCTATATAATTTTAC+TGG + chr4.2:53844316-53844335 MS.gene027436:CDS 25.0%
!! ACCTGAAATAATGATAGTTT+TGG - chr4.2:53844257-53844276 None:intergenic 25.0%
!! CATGTGTAAATTTTATTCCT+AGG - chr4.2:53843318-53843337 None:intergenic 25.0%
!! CTATATAATTTTACTGGCAA+GGG + chr4.2:53844322-53844341 MS.gene027436:CDS 25.0%
!! CTTAATCGTATTAAAGTGTT+TGG - chr4.2:53843513-53843532 None:intergenic 25.0%
!! TAATGTTATTTGGTTATGCA+TGG + chr4.2:53843153-53843172 MS.gene027436:intron 25.0%
!! TTATTATCTTGTTGTGAATG+TGG + chr4.2:53842054-53842073 MS.gene027436:intron 25.0%
!! TTTTATTCCCATGTTAAAGT+AGG + chr4.2:53843349-53843368 MS.gene027436:intron 25.0%
!!! TTTAGTTTGTGTGTAGAATT+TGG - chr4.2:53843916-53843935 None:intergenic 25.0%
AATGCTTAGAATTATGCAAG+GGG + chr4.2:53842526-53842545 MS.gene027436:intron 30.0%
AGAATGCTTAGAATTATGCA+AGG + chr4.2:53842524-53842543 MS.gene027436:intron 30.0%
AGTCGTAATACATTTGATCT+TGG + chr4.2:53844448-53844467 MS.gene027436:CDS 30.0%
ATTGCTCATCAATTTCAACA+AGG + chr4.2:53844299-53844318 MS.gene027436:CDS 30.0%
CAATAAAAAAAGCTGTCAGA+TGG - chr4.2:53843978-53843997 None:intergenic 30.0%
CCTAGGAATAAAATATACCT+AGG - chr4.2:53843301-53843320 None:intergenic 30.0%
GAATGCTTAGAATTATGCAA+GGG + chr4.2:53842525-53842544 MS.gene027436:intron 30.0%
GGAGAATTAATGTCAAGATT+GGG + chr4.2:53844620-53844639 MS.gene027436:CDS 30.0%
TACCTTGGAACATTATTCTT+AGG - chr4.2:53843539-53843558 None:intergenic 30.0%
TCAAACCACACTTATTGAAA+TGG + chr4.2:53844417-53844436 MS.gene027436:CDS 30.0%
TGTTGAAATTGATGAGCAAT+GGG - chr4.2:53844299-53844318 None:intergenic 30.0%
TTAAAACCTTGAAGTAACTC+TGG - chr4.2:53841644-53841663 None:intergenic 30.0%
TTATTCCCATGTTAAAGTAG+GGG + chr4.2:53843351-53843370 MS.gene027436:intron 30.0%
TTCCTAAGAATAATGTTCCA+AGG + chr4.2:53843534-53843553 MS.gene027436:intron 30.0%
TTGCGCTAACATATGTATTT+CGG + chr4.2:53843995-53844014 MS.gene027436:intron 30.0%
TTGTTGAAATTGATGAGCAA+TGG - chr4.2:53844300-53844319 None:intergenic 30.0%
TTTAATAATAAACGATCCCC+TGG - chr4.2:53842670-53842689 None:intergenic 30.0%
! AAACAATTTGTTCAGCTTTG+GGG - chr4.2:53841737-53841756 None:intergenic 30.0%
! CAAAACAATTTGTTCAGCTT+TGG - chr4.2:53841739-53841758 None:intergenic 30.0%
! CCTAGGTATATTTTATTCCT+AGG + chr4.2:53843298-53843317 MS.gene027436:intron 30.0%
! GCTATATAATTTTACTGGCA+AGG + chr4.2:53844321-53844340 MS.gene027436:CDS 30.0%
! GGTAATTAATTTAGTTTCCC+AGG - chr4.2:53843492-53843511 None:intergenic 30.0%
! GTCAATATTTAAAACTGACG+TGG + chr4.2:53844168-53844187 MS.gene027436:intron 30.0%
! TCTTTTAGTATCTCATTCAG+TGG + chr4.2:53842312-53842331 MS.gene027436:intron 30.0%
!! CTAGCATCGACATATTAATA+CGG - chr4.2:53841914-53841933 None:intergenic 30.0%
!! TAGCATCGACATATTAATAC+GGG - chr4.2:53841913-53841932 None:intergenic 30.0%
!! TTAAAAAAAAAGCACCGTCA+CGG + chr4.2:53844020-53844039 MS.gene027436:intron 30.0%
!!! AGTGTTTTGGAGGTTTTTAT+AGG - chr4.2:53842981-53843000 None:intergenic 30.0%
!!! ATCTTGAAATTTTTTTCCGG+GGG + chr4.2:53842338-53842357 MS.gene027436:intron 30.0%
!!! CGGATCTTGAAATTTTTTTC+CGG + chr4.2:53842335-53842354 MS.gene027436:intron 30.0%
!!! GATCTTGAAATTTTTTTCCG+GGG + chr4.2:53842337-53842356 MS.gene027436:intron 30.0%
!!! GGATCTTGAAATTTTTTTCC+GGG + chr4.2:53842336-53842355 MS.gene027436:intron 30.0%
!!! GTGTTTTGGAGGTTTTTATA+GGG - chr4.2:53842980-53842999 None:intergenic 30.0%
AAAAAAAAAAGGTCCTGGGT+AGG - chr4.2:53842566-53842585 None:intergenic 35.0%
AAGATTCCCCTACTTTAACA+TGG - chr4.2:53843360-53843379 None:intergenic 35.0%
AAGCAAGTAGTTAAGAGAAG+GGG + chr4.2:53844478-53844497 MS.gene027436:CDS 35.0%
AATAGGGTGTGTTTGTTTCA+AGG - chr4.2:53843589-53843608 None:intergenic 35.0%
ACAAACCAATCAAGCTGAAA+AGG + chr4.2:53842131-53842150 MS.gene027436:CDS 35.0%
AGATTCCCCTACTTTAACAT+GGG - chr4.2:53843359-53843378 None:intergenic 35.0%
ATACCTTGACAAAGCAATCA+TGG - chr4.2:53841827-53841846 None:intergenic 35.0%
ATCATGGCAGAACAAACAAA+TGG - chr4.2:53843709-53843728 None:intergenic 35.0%
ATCATGGGAATAACATACCT+TGG - chr4.2:53843554-53843573 None:intergenic 35.0%
ATGATTGACATGGATTTGCA+GGG + chr4.2:53843724-53843743 MS.gene027436:intron 35.0%
ATTCCAAATCTTACACTTCG+TGG + chr4.2:53842159-53842178 MS.gene027436:CDS 35.0%
CAAATGTATTACGACTTCCA+GGG - chr4.2:53844444-53844463 None:intergenic 35.0%
CAAGCAAGTAGTTAAGAGAA+GGG + chr4.2:53844477-53844496 MS.gene027436:CDS 35.0%
CGTCTATAGAAATGAGATCA+GGG - chr4.2:53842932-53842951 None:intergenic 35.0%
CTGTACGCTAGTAATGATAA+TGG - chr4.2:53843941-53843960 None:intergenic 35.0%
GGGAGAATTAATGTCAAGAT+TGG + chr4.2:53844619-53844638 MS.gene027436:CDS 35.0%
GTCTATAGAAATGAGATCAG+GGG - chr4.2:53842931-53842950 None:intergenic 35.0%
TAAAAAAAAAGGTCCTGGGT+AGG - chr4.2:53842482-53842501 None:intergenic 35.0%
TAATGAATTTGGCAAGTCCA+TGG + chr4.2:53844588-53844607 MS.gene027436:CDS 35.0%
TACATCATTGTAAACTGGTG+TGG + chr4.2:53842406-53842425 MS.gene027436:intron 35.0%
TCAAATGTATTACGACTTCC+AGG - chr4.2:53844445-53844464 None:intergenic 35.0%
TCAAGCAAGTAGTTAAGAGA+AGG + chr4.2:53844476-53844495 MS.gene027436:CDS 35.0%
TCGTCTATAGAAATGAGATC+AGG - chr4.2:53842933-53842952 None:intergenic 35.0%
TGGATTGCAAATTTATTCCC+AGG + chr4.2:53843218-53843237 MS.gene027436:intron 35.0%
TTGAATAGAATCACGTGTGT+TGG + chr4.2:53841956-53841975 MS.gene027436:intron 35.0%
TTTAGTATCTCATTCAGTGG+CGG + chr4.2:53842315-53842334 MS.gene027436:intron 35.0%
TTTATTCCCATGGGAATAAG+AGG + chr4.2:53843379-53843398 MS.gene027436:intron 35.0%
TTTCCATGATTGCTTTGTCA+AGG + chr4.2:53841821-53841840 MS.gene027436:CDS 35.0%
! ATGTCTTCTATCTGAAGTGT+CGG + chr4.2:53844201-53844220 MS.gene027436:intron 35.0%
! GGTTTTTATAGGGTGAGAAA+AGG - chr4.2:53842970-53842989 None:intergenic 35.0%
! TGGATTTTTGAATCTGGGTT+GGG + chr4.2:53843012-53843031 MS.gene027436:intron 35.0%
! TTGGATTTTTGAATCTGGGT+TGG + chr4.2:53843011-53843030 MS.gene027436:intron 35.0%
!!! AATTCTCCCCATTTTTTCCA+TGG - chr4.2:53844608-53844627 None:intergenic 35.0%
AAGCATTCACATCGAATGCA+AGG + chr4.2:53842642-53842661 MS.gene027436:intron 40.0%
AATGTCAAGATTGGGACTGA+GGG + chr4.2:53844628-53844647 MS.gene027436:CDS 40.0%
AATGTGACATTGGGAATCCT+TGG + chr4.2:53843241-53843260 MS.gene027436:intron 40.0%
ACACTTATTGAAATGGACCC+TGG + chr4.2:53844424-53844443 MS.gene027436:CDS 40.0%
AGGGTCCATTTCAATAAGTG+TGG - chr4.2:53844425-53844444 None:intergenic 40.0%
ATCATTGTAAACTGGTGTGG+TGG + chr4.2:53842409-53842428 MS.gene027436:intron 40.0%
ATTCCCAATGTCACATTCCT+GGG - chr4.2:53843238-53843257 None:intergenic 40.0%
ATTCCCAGGAATGTGACATT+GGG + chr4.2:53843232-53843251 MS.gene027436:intron 40.0%
ATTTCAGGGATGTGATGCAT+CGG + chr4.2:53842092-53842111 MS.gene027436:intron 40.0%
CATATTCACCGTCTAGATCT+GGG - chr4.2:53844357-53844376 None:intergenic 40.0%
CATGATTGACATGGATTTGC+AGG + chr4.2:53843723-53843742 MS.gene027436:intron 40.0%
CTAACACTCTTTGGCAATGT+TGG + chr4.2:53843853-53843872 MS.gene027436:CDS 40.0%
CTGCAAATCCATGTCAATCA+TGG - chr4.2:53843725-53843744 None:intergenic 40.0%
CTTGTTGAAAAAGAATGCCC+TGG + chr4.2:53842210-53842229 MS.gene027436:CDS 40.0%
GCAAGTCCATGGAAAAAATG+GGG + chr4.2:53844599-53844618 MS.gene027436:CDS 40.0%
GGCAAGTCCATGGAAAAAAT+GGG + chr4.2:53844598-53844617 MS.gene027436:CDS 40.0%
GTGTGTAGAATTTGGCATAC+CGG - chr4.2:53843908-53843927 None:intergenic 40.0%
TAAGCAATGCAGCATCTGAT+TGG - chr4.2:53844510-53844529 None:intergenic 40.0%
TAATGTCAAGATTGGGACTG+AGG + chr4.2:53844627-53844646 MS.gene027436:CDS 40.0%
TAGCCACGAAGTGTAAGATT+TGG - chr4.2:53842165-53842184 None:intergenic 40.0%
TATAGAAATGAGATCAGGGG+CGG - chr4.2:53842928-53842947 None:intergenic 40.0%
TATTCCCAGGAATGTGACAT+TGG + chr4.2:53843231-53843250 MS.gene027436:intron 40.0%
TGAAACAAACAAGGGAACCA+AGG - chr4.2:53843261-53843280 None:intergenic 40.0%
TGGCAAGTCCATGGAAAAAA+TGG + chr4.2:53844597-53844616 MS.gene027436:CDS 40.0%
TGGTTACCTCTTATTCCCAT+GGG - chr4.2:53843388-53843407 None:intergenic 40.0%
TTGTTCTGCCATGATTGACA+TGG + chr4.2:53843714-53843733 MS.gene027436:intron 40.0%
! ACGTCTTTCATCAGAAGTGT+CGG + chr4.2:53842006-53842025 MS.gene027436:intron 40.0%
! AGCATCCTTTTCAGCTTGAT+TGG - chr4.2:53842139-53842158 None:intergenic 40.0%
! AGGGGAATCTTTTATTCCCA+TGG + chr4.2:53843369-53843388 MS.gene027436:intron 40.0%
! ATTTCAGGTGCACACACAAT+TGG + chr4.2:53844268-53844287 MS.gene027436:intron 40.0%
! CAGCTTTTAGCATAGAAACC+TGG - chr4.2:53841714-53841733 None:intergenic 40.0%
! GGGGAATCTTTTATTCCCAT+GGG + chr4.2:53843370-53843389 MS.gene027436:intron 40.0%
! GTTGTATTTGATGACCGTGA+CGG - chr4.2:53844037-53844056 None:intergenic 40.0%
!! AATGACCTAGTCTTGCTTTC+CGG + chr4.2:53843886-53843905 MS.gene027436:CDS 40.0%
!! AGTGTGATAGTGGGAAGTTA+TGG - chr4.2:53843412-53843431 None:intergenic 40.0%
!! CAACATTGCCAAAGAGTGTT+AGG - chr4.2:53843855-53843874 None:intergenic 40.0%
!! GTGTGATAGTGGGAAGTTAT+GGG - chr4.2:53843411-53843430 None:intergenic 40.0%
!!! CAGGGCATTCTTTTTCAACA+AGG - chr4.2:53842212-53842231 None:intergenic 40.0%
AACACGCGACCTTTAAGTCA+CGG + chr4.2:53842791-53842810 MS.gene027436:intron 45.0%
ACTGTCCTCCTAACACTCTT+TGG + chr4.2:53843844-53843863 MS.gene027436:CDS 45.0%
AGAATTATGCAAGGGGATGC+TGG + chr4.2:53842533-53842552 MS.gene027436:intron 45.0%
AGGACAGTGAGGTTGTGAAA+TGG - chr4.2:53843832-53843851 None:intergenic 45.0%
ATGTCCATGTCTGATGCAAG+GGG + chr4.2:53842442-53842461 MS.gene027436:intron 45.0%
ATTGACATGGATTTGCAGGG+TGG + chr4.2:53843727-53843746 MS.gene027436:intron 45.0%
CATGTCCATGTCTGATGCAA+GGG + chr4.2:53842441-53842460 MS.gene027436:intron 45.0%
CCTGTTGGAACCTTCCAATA+AGG - chr4.2:53843754-53843773 None:intergenic 45.0%
CCTTATTGGAAGGTTCCAAC+AGG + chr4.2:53843751-53843770 MS.gene027436:CDS 45.0%
CTTCAAATATTTGGCACCCC+CGG - chr4.2:53842357-53842376 None:intergenic 45.0%
GAAGGTTCCAACAGGTAGAA+GGG + chr4.2:53843759-53843778 MS.gene027436:CDS 45.0%
GATCAAGACCCAGATCTAGA+CGG + chr4.2:53844346-53844365 MS.gene027436:CDS 45.0%
GATTCCCAATGTCACATTCC+TGG - chr4.2:53843239-53843258 None:intergenic 45.0%
GCATATTCACCGTCTAGATC+TGG - chr4.2:53844358-53844377 None:intergenic 45.0%
GGGAATCCAGAGTTACTTCA+AGG + chr4.2:53841635-53841654 MS.gene027436:CDS 45.0%
GTGGTTACCTCTTATTCCCA+TGG - chr4.2:53843389-53843408 None:intergenic 45.0%
TTGACATGGATTTGCAGGGT+GGG + chr4.2:53843728-53843747 MS.gene027436:intron 45.0%
!! CATTGCCAAAGAGTGTTAGG+AGG - chr4.2:53843852-53843871 None:intergenic 45.0%
!! CTATGGGGGTGTTTGTTTCA+TGG + chr4.2:53843198-53843217 MS.gene027436:intron 45.0%
!! TGATAGTGGGAAGTTATGGG+TGG - chr4.2:53843408-53843427 None:intergenic 45.0%
!! ATTATTAAAATAAGAAAAAT+TGG + chr4.2:53842681-53842700 MS.gene027436:intron 5.0%
!! TTTATTAAAATAAGAAAAAT+TGG + chr4.2:53842498-53842517 MS.gene027436:intron 5.0%
!!! CTTATTTTAATAAAAAAAAA+AGG - chr4.2:53842492-53842511 None:intergenic 5.0%
!!! TCTTATTTTAATAAAAAAAA+AGG - chr4.2:53842493-53842512 None:intergenic 5.0%
!!! TTATTTTCTTAAATTAATAT+TGG - chr4.2:53844081-53844100 None:intergenic 5.0%
ACACGCGACCTTTAAGTCAC+GGG + chr4.2:53842792-53842811 MS.gene027436:intron 50.0%
ACTCATGCTCAATTGCAGCC+AGG + chr4.2:53841693-53841712 MS.gene027436:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr4.2:53843769-53843788 None:intergenic 50.0%
ATGAGTGCAGCTGCTAGTGA+TGG - chr4.2:53841792-53841811 None:intergenic 50.0%
CAGCACAAGAGACAACACCA+GGG - chr4.2:53842230-53842249 None:intergenic 50.0%
CCATGTCCATGTCTGATGCA+AGG + chr4.2:53842440-53842459 MS.gene027436:intron 50.0%
CCTTGCATCAGACATGGACA+TGG - chr4.2:53842443-53842462 None:intergenic 50.0%
GCATACCGGAAAGCAAGACT+AGG - chr4.2:53843894-53843913 None:intergenic 50.0%
GCTGCTAGTGATGGTACACT+AGG - chr4.2:53841783-53841802 None:intergenic 50.0%
GGAAGGTTCCAACAGGTAGA+AGG + chr4.2:53843758-53843777 MS.gene027436:CDS 50.0%
GGGCGTGCGAGAAATTCATA+GGG + chr4.2:53843032-53843051 MS.gene027436:intron 50.0%
GGTTGTGAAATGGAGCAGGA+AGG - chr4.2:53843822-53843841 None:intergenic 50.0%
GTGAGGTTGTGAAATGGAGC+AGG - chr4.2:53843826-53843845 None:intergenic 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr4.2:53843763-53843782 MS.gene027436:CDS 50.0%
TCAGCACAAGAGACAACACC+AGG - chr4.2:53842231-53842250 None:intergenic 50.0%
TGGGCGTGCGAGAAATTCAT+AGG + chr4.2:53843031-53843050 MS.gene027436:intron 50.0%
TTGTCGTCGCAGCGGTTATT+CGG - chr4.2:53842822-53842841 None:intergenic 50.0%
! ACATCGAATGCAAGGTGCCA+GGG + chr4.2:53842650-53842669 MS.gene027436:intron 50.0%
! AGAGTGTTAGGAGGACAGTG+AGG - chr4.2:53843843-53843862 None:intergenic 50.0%
! ATAAAAGTTGGGGGGTGCAG+TGG + chr4.2:53842879-53842898 MS.gene027436:intron 50.0%
! ATTTGCAGGGTGGGCCTTAT+TGG + chr4.2:53843737-53843756 MS.gene027436:intron 50.0%
!! CTAAAGCATTGTCGTCGCAG+CGG - chr4.2:53842830-53842849 None:intergenic 50.0%
ACGCGACCTTTAAGTCACGG+GGG + chr4.2:53842794-53842813 MS.gene027436:intron 55.0%
CACGCGACCTTTAAGTCACG+GGG + chr4.2:53842793-53842812 MS.gene027436:intron 55.0%
GCAACCCCTTGCATCAGACA+TGG - chr4.2:53842449-53842468 None:intergenic 55.0%
GGATCTCTTAAGAGACCCCC+AGG - chr4.2:53842907-53842926 None:intergenic 55.0%
TGTCTGATGCAAGGGGTTGC+TGG + chr4.2:53842449-53842468 MS.gene027436:intron 55.0%
! CACATCGAATGCAAGGTGCC+AGG + chr4.2:53842649-53842668 MS.gene027436:intron 55.0%
! CATCGAATGCAAGGTGCCAG+GGG + chr4.2:53842651-53842670 MS.gene027436:intron 55.0%
!! TGCTGGTTCGAATCCTACCC+AGG + chr4.2:53842466-53842485 MS.gene027436:intron 55.0%
CGCGACCTTTAAGTCACGGG+GGG + chr4.2:53842795-53842814 MS.gene027436:intron 60.0%
TCGGTCCCCCCGTGACTTAA+AGG - chr4.2:53842803-53842822 None:intergenic 60.0%
!! GCAGGGTGGGCCTTATTGGA+AGG + chr4.2:53843741-53843760 MS.gene027436:intron 60.0%
AGGTCGCGTGTTCGATCCCC+TGG - chr4.2:53842783-53842802 None:intergenic 65.0%
! TGGGGGGTGCAGTGGCACCT+GGG + chr4.2:53842887-53842906 MS.gene027436:intron 70.0%
! TTGGGGGGTGCAGTGGCACC+TGG + chr4.2:53842886-53842905 MS.gene027436:intron 70.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr4.2:53842888-53842907 MS.gene027436:intron 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr4.2:53842889-53842908 MS.gene027436:intron 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 53841627 53844684 53841627 ID=MS.gene027436
chr4.2 mRNA 53841627 53844684 53841627 ID=MS.gene027436.t1;Parent=MS.gene027436
chr4.2 exon 53841627 53841842 53841627 ID=MS.gene027436.t1.exon1;Parent=MS.gene027436.t1
chr4.2 CDS 53841627 53841842 53841627 ID=cds.MS.gene027436.t1;Parent=MS.gene027436.t1
chr4.2 exon 53842099 53842290 53842099 ID=MS.gene027436.t1.exon2;Parent=MS.gene027436.t1
chr4.2 CDS 53842099 53842290 53842099 ID=cds.MS.gene027436.t1;Parent=MS.gene027436.t1
chr4.2 exon 53843745 53843907 53843745 ID=MS.gene027436.t1.exon3;Parent=MS.gene027436.t1
chr4.2 CDS 53843745 53843907 53843745 ID=cds.MS.gene027436.t1;Parent=MS.gene027436.t1
chr4.2 exon 53844275 53844684 53844275 ID=MS.gene027436.t1.exon4;Parent=MS.gene027436.t1
chr4.2 CDS 53844275 53844684 53844275 ID=cds.MS.gene027436.t1;Parent=MS.gene027436.t1
Gene Sequence

>MS.gene027436

ATGAAAATGGGAATCCAGAGTTACTTCAAGGTTTTAATTATTTGTCTTATAGCAATAATTGGATCAACTCATGCTCAATTGCAGCCAGGTTTCTATGCTAAAAGCTGCCCCAAAGCTGAACAAATTGTTTTGAAGTATGTTCATGAACACATTCCTAGTGTACCATCACTAGCAGCTGCACTCATAAGACTACATTTCCATGATTGCTTTGTCAAGGTATACTTTATTTTTTTCATACTTGATTTTATCTATTCAAGCGCAAACACGAATATCAGACACGACACCCGTATTAATATGTCGATGCTAGCAAAACTTGAAATAATAATTAATTGAATAGAATCACGTGTGTTGGTGATGTGTTCAATGTCAGACATCAGACACGTCTTTCATCAGAAGTGTCGGTGATACAAAGTTTATATATATGAAATTATTATCTTGTTGTGAATGTGGAACTAATACATATGCATTTCAGGGATGTGATGCATCGGTACTTCTTAACTCAACACAAACCAATCAAGCTGAAAAGGATGCTATTCCAAATCTTACACTTCGTGGCTATGAATTCATTGACACAATAAAGAGCCTTGTTGAAAAAGAATGCCCTGGTGTTGTCTCTTGTGCTGATATTTTGACTTTGACTGCTAGAGATTCTATTCATGCTATTGTAAGTATTCATTTGTTTCATTCTTTTAGTATCTCATTCAGTGGCGGATCTTGAAATTTTTTTCCGGGGGTGCCAAATATTTGAAGAATATATATTAAACAGTTTCAAAAAAATATACATCATTGTAAACTGGTGTGGTGGTAGTATTGCCATGTCCATGTCTGATGCAAGGGGTTGCTGGTTCGAATCCTACCCAGGACCTTTTTTTTTATTAAAATAAGAAAAATTGGCTTAGAATGCTTAGAATTATGCAAGGGGATGCTGGTTCGAATCCTACCCAGGACCTTTTTTTTTTATTAAAATAAGAAAAATTGGTTAGAATGCTTAGAATTAGAATAATTATAAAAAGAAAAGCATTCACATCGAATGCAAGGTGCCAGGGGATCGTTTATTATTAAAATAAGAAAAATTGGCTTAGAATGCTTAGAATTAGAATAATTATAAAAAGAAAAGCATTCACATAAAAGCATTCACATCGAATGCAAGGTGCCAGGGGATCGAACACGCGACCTTTAAGTCACGGGGGGACCGAATAACCGCTGCGACGACAATGCTTTAGTGTAATGTTATGCATAATATGAAATTTATATAAAAGTTGGGGGGTGCAGTGGCACCTGGGGGTCTCTTAAGAGATCCGCCCCTGATCTCATTTCTATAGACGATTAAACTTTTGACTCCTTTTCTCACCCTATAAAAACCTCCAAAACACTTTAAAATATTTTGGATTTTTGAATCTGGGTTGGGCGTGCGAGAAATTCATAGGGTGAGAAAAGTAATAGTCTAAATTTTTTCTGATATGCTATATATATTTGGGTTGTCTACTACTTTTTTTATTTTTGAACTTTTGAATCAATTAGATAAATAATGTTATTTGGTTATGCATGGCAACTCATTTATGTATTATGTTCTATGGGGGTGTTTGTTTCATGGATTGCAAATTTATTCCCAGGAATGTGACATTGGGAATCCTTGGTTCCCTTGTTTGTTTCAAGTTATCATAAATTATGCCTAGGTATATTTTATTCCTAGGAATAAAATTTACACATGACTTTTCGATTTTTTATTCCCATGTTAAAGTAGGGGAATCTTTTATTCCCATGGGAATAAGAGGTAACCACCCATAACTTCCCACTATCACACTATTTTAACTATTTTATTTTTTGTTTTAAATTATAAATTAAATATATTTAAAAACATTCCTGGGAAACTAAATTAATTACCAAACACTTTAATACGATTAAGATTCCTAAGAATAATGTTCCAAGGTATGTTATTCCCATGATTGCAAATTTAATCCTTGAAACAAACACACCCTATTTGTTTTATGTCTTGTAACTTTTAAAAACATGTTGTGTAGTATTCATGACTAGTTTAGTATGTATAATTATTTGGTTTTATAGGAGAATTATAAATGACCATTTGTTTGTTCTGCCATGATTGACATGGATTTGCAGGGTGGGCCTTATTGGAAGGTTCCAACAGGTAGAAGGGATGGAGTCATATCTAAAGCAGCAGATACTTTTACTAGCCTTCCTGCTCCATTTCACAACCTCACTGTCCTCCTAACACTCTTTGGCAATGTTGGACTTGATGCAAATGACCTAGTCTTGCTTTCCGGTATGCCAAATTCTACACACAAACTAAATTCCATTATCATTACTAGCGTACAGACAAACACTTGTGCCCATCTGACAGCTTTTTTTATTGCGCTAACATATGTATTTCGGCTTTAAAAAAAAAGCACCGTCACGGTCATCAAATACAACATTAACATTCACATGTAGATGCCAATATTAATTTAAGAAAATAAAAGTAGGTTAATGTAACTACATGTGTTACCGAGTTTTTAAAAAAAAAGTAACTTCATATGTCAATGTGTCAATATTTAAAACTGACGTGGTACGTTCTACATGTCTTCTATCTGAAGTGTCGGTGATACAATTGTTTGATCTTAATCTAATCACCAAAACTATCATTATTTCAGGTGCACACACAATTGGTGTTTCCCATTGCTCATCAATTTCAACAAGGCTATATAATTTTACTGGCAAGGGTGATCAAGACCCAGATCTAGACGGTGAATATGCTAAAAATTTGAAAACATTTAAATGTAAGAATATCAATGATCAAACCACACTTATTGAAATGGACCCTGGAAGTCGTAATACATTTGATCTTGGCTATTTCAAGCAAGTAGTTAAGAGAAGGGGTTTGTTCCAATCAGATGCTGCATTGCTTAAAAGCTCTACAACAAGATCTATTCTTGCACAACATCTTCAATCAAATGAAAAATTCTTTAATGAATTTGGCAAGTCCATGGAAAAAATGGGGAGAATTAATGTCAAGATTGGGACTGAGGGAGAGATCAGAAAGCATTGTGCATTTATAAATTAA
Protein sequence

>MS.gene027436.t1

MKMGIQSYFKVLIICLIAIIGSTHAQLQPGFYAKSCPKAEQIVLKYVHEHIPSVPSLAAALIRLHFHDCFVKGCDASVLLNSTQTNQAEKDAIPNLTLRGYEFIDTIKSLVEKECPGVVSCADILTLTARDSIHAIGGPYWKVPTGRRDGVISKAADTFTSLPAPFHNLTVLLTLFGNVGLDANDLVLLSGAHTIGVSHCSSISTRLYNFTGKGDQDPDLDGEYAKNLKTFKCKNINDQTTLIEMDPGSRNTFDLGYFKQVVKRRGLFQSDAALLKSSTTRSILAQHLQSNEKFFNEFGKSMEKMGRINVKIGTEGEIRKHCAFIN