Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010624.t1 | XP_003612174.1 | 97.5 | 522 | 13 | 0 | 31 | 552 | 26 | 547 | 1.10E-289 | 1005.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010624.t1 | O04472 | 64.3 | 529 | 179 | 3 | 31 | 551 | 14 | 540 | 3.8e-203 | 709.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010624.t1 | G7JW84 | 97.5 | 522 | 13 | 0 | 31 | 552 | 26 | 547 | 7.6e-290 | 1005.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene56947 | MS.gene010624 | PPI |
| MS.gene010624 | MS.gene86930 | PPI |
| MS.gene70604 | MS.gene010624 | PPI |
| MS.gene022275 | MS.gene010624 | PPI |
| MS.gene25932 | MS.gene010624 | PPI |
| MS.gene010624 | MS.gene91317 | PPI |
| MS.gene010624 | MS.gene60344 | PPI |
| MS.gene033221 | MS.gene010624 | PPI |
| MS.gene074377 | MS.gene010624 | PPI |
| MS.gene010624 | MS.gene43290 | PPI |
| MS.gene010624 | MS.gene96701 | PPI |
| MS.gene010624 | MS.gene71606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010624.t1 | MTR_5g022110 | 96.196 | 552 | 16 | 1 | 1 | 552 | 1 | 547 | 0.0 | 1082 |
| MS.gene010624.t1 | MTR_3g103230 | 76.938 | 529 | 122 | 0 | 24 | 552 | 26 | 554 | 0.0 | 863 |
| MS.gene010624.t1 | MTR_8g063220 | 59.176 | 534 | 209 | 3 | 26 | 552 | 2 | 533 | 0.0 | 665 |
| MS.gene010624.t1 | MTR_3g078270 | 58.256 | 539 | 213 | 2 | 17 | 552 | 3 | 532 | 0.0 | 658 |
| MS.gene010624.t1 | MTR_4g106750 | 57.250 | 531 | 223 | 2 | 26 | 552 | 2 | 532 | 0.0 | 640 |
| MS.gene010624.t1 | MTR_5g035180 | 56.564 | 518 | 221 | 2 | 39 | 552 | 21 | 538 | 0.0 | 625 |
| MS.gene010624.t1 | MTR_1g106085 | 55.577 | 529 | 227 | 4 | 26 | 551 | 3 | 526 | 0.0 | 591 |
| MS.gene010624.t1 | MTR_4g106750 | 57.469 | 482 | 202 | 1 | 74 | 552 | 2 | 483 | 0.0 | 578 |
| MS.gene010624.t1 | MTR_2g016460 | 52.672 | 524 | 238 | 4 | 31 | 550 | 5 | 522 | 0.0 | 567 |
| MS.gene010624.t1 | MTR_8g086520 | 52.390 | 523 | 241 | 4 | 31 | 550 | 5 | 522 | 0.0 | 567 |
| MS.gene010624.t1 | MTR_3g080390 | 51.938 | 516 | 240 | 4 | 40 | 550 | 6 | 518 | 0.0 | 548 |
| MS.gene010624.t1 | MTR_8g086520 | 54.566 | 438 | 196 | 1 | 31 | 468 | 5 | 439 | 3.51e-176 | 506 |
| MS.gene010624.t1 | MTR_1g021120 | 51.262 | 515 | 238 | 5 | 44 | 551 | 38 | 546 | 2.59e-175 | 506 |
| MS.gene010624.t1 | MTR_8g086520 | 54.386 | 399 | 179 | 1 | 31 | 429 | 5 | 400 | 8.97e-159 | 459 |
| MS.gene010624.t1 | MTR_4g106750 | 57.568 | 370 | 154 | 1 | 186 | 552 | 11 | 380 | 2.90e-152 | 441 |
| MS.gene010624.t1 | MTR_8g086520 | 52.854 | 403 | 185 | 3 | 151 | 550 | 6 | 406 | 2.09e-149 | 435 |
| MS.gene010624.t1 | MTR_8g068550 | 34.641 | 459 | 277 | 3 | 31 | 468 | 205 | 661 | 8.52e-90 | 292 |
| MS.gene010624.t1 | MTR_5g032020 | 34.423 | 520 | 290 | 5 | 66 | 545 | 185 | 693 | 3.96e-89 | 289 |
| MS.gene010624.t1 | MTR_2g084895 | 32.679 | 560 | 328 | 7 | 33 | 549 | 125 | 678 | 7.21e-89 | 288 |
| MS.gene010624.t1 | MTR_2g103510 | 30.314 | 574 | 336 | 10 | 7 | 549 | 51 | 591 | 3.56e-84 | 273 |
| MS.gene010624.t1 | MTR_4g055290 | 32.197 | 528 | 300 | 7 | 64 | 549 | 169 | 680 | 1.43e-80 | 266 |
| MS.gene010624.t1 | MTR_8g086535 | 56.034 | 116 | 50 | 1 | 315 | 429 | 1 | 116 | 8.42e-34 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010624.t1 | AT1G65550 | 64.340 | 530 | 177 | 4 | 31 | 551 | 14 | 540 | 0.0 | 739 |
| MS.gene010624.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene010624.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene010624.t1 | AT5G62890 | 58.569 | 531 | 216 | 2 | 26 | 552 | 2 | 532 | 0.0 | 649 |
| MS.gene010624.t1 | AT1G60030 | 58.414 | 517 | 212 | 1 | 39 | 552 | 22 | 538 | 0.0 | 645 |
| MS.gene010624.t1 | AT1G10540 | 55.844 | 539 | 230 | 4 | 19 | 551 | 2 | 538 | 0.0 | 615 |
| MS.gene010624.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene010624.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene010624.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene010624.t1 | AT5G49990 | 57.115 | 520 | 220 | 1 | 36 | 552 | 9 | 528 | 0.0 | 598 |
| MS.gene010624.t1 | AT1G49960 | 55.492 | 528 | 226 | 3 | 29 | 551 | 2 | 525 | 0.0 | 588 |
| MS.gene010624.t1 | AT5G62890 | 61.830 | 448 | 170 | 1 | 26 | 472 | 2 | 449 | 0.0 | 580 |
| MS.gene010624.t1 | AT2G34190 | 51.527 | 524 | 246 | 4 | 30 | 550 | 4 | 522 | 0.0 | 558 |
| MS.gene010624.t1 | AT2G05760 | 51.550 | 516 | 242 | 4 | 40 | 550 | 6 | 518 | 0.0 | 544 |
| MS.gene010624.t1 | AT2G26510 | 49.225 | 516 | 252 | 3 | 41 | 550 | 36 | 547 | 8.87e-171 | 495 |
| MS.gene010624.t1 | AT5G25420 | 56.136 | 440 | 123 | 4 | 31 | 470 | 26 | 395 | 4.63e-170 | 488 |
| MS.gene010624.t1 | AT1G10540 | 57.326 | 389 | 161 | 3 | 19 | 404 | 2 | 388 | 1.96e-157 | 455 |
| MS.gene010624.t1 | AT2G26510 | 49.725 | 364 | 183 | 0 | 41 | 404 | 36 | 399 | 1.53e-120 | 362 |
| MS.gene010624.t1 | AT2G26510 | 49.003 | 351 | 179 | 0 | 41 | 391 | 36 | 386 | 3.22e-113 | 343 |
| MS.gene010624.t1 | AT2G27810 | 29.623 | 584 | 373 | 5 | 3 | 549 | 119 | 701 | 1.52e-79 | 264 |
| MS.gene010624.t1 | AT2G27810 | 32.582 | 488 | 306 | 3 | 3 | 468 | 119 | 605 | 8.01e-78 | 260 |
| MS.gene010624.t1 | AT4G38050 | 31.541 | 558 | 312 | 8 | 39 | 549 | 170 | 704 | 1.15e-77 | 259 |
| MS.gene010624.t1 | AT2G27810 | 31.992 | 472 | 298 | 3 | 3 | 452 | 119 | 589 | 8.62e-72 | 240 |
| MS.gene010624.t1 | AT2G27810 | 32.235 | 425 | 265 | 3 | 3 | 405 | 119 | 542 | 1.44e-61 | 212 |
Find 119 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCATTGAAACAGGAAAATT+TGG | 0.125795 | 5.1:+13231948 | MS.gene010624:intron |
| TGCATTGGTTGCATTAATTT+TGG | 0.216559 | 5.1:+13232447 | MS.gene010624:CDS |
| CTAGGCTTCTCATTCTTCTT+AGG | 0.228918 | 5.1:+13232212 | MS.gene010624:CDS |
| CTTGCGAAATGCGTTGAAAT+TGG | 0.244279 | 5.1:+13230567 | MS.gene010624:CDS |
| TGAGAAGCCTAGCACAAATT+TGG | 0.262002 | 5.1:-13232201 | None:intergenic |
| ACCACCTTCATTGGCAGCTT+TGG | 0.293558 | 5.1:-13229176 | None:intergenic |
| AAGTCCTACTTTCAATGTTT+TGG | 0.295517 | 5.1:+13231130 | MS.gene010624:CDS |
| ACCTATAATTTCTATTGTTC+AGG | 0.295647 | 5.1:+13229902 | MS.gene010624:CDS |
| TCAAGTTTCCAAATGGCTAT+TGG | 0.296920 | 5.1:+13230083 | MS.gene010624:CDS |
| GGCATGTTTGGTTGTGTAAC+TGG | 0.299241 | 5.1:+13231505 | MS.gene010624:CDS |
| AACTATAATTGTTCCTCAAA+TGG | 0.310349 | 5.1:+13229656 | MS.gene010624:CDS |
| TGCAGGTCAAGCAGTGATAT+TGG | 0.311608 | 5.1:+13229587 | MS.gene010624:intron |
| ATAGTTTCATTTACCTCATA+AGG | 0.311803 | 5.1:-13229951 | None:intergenic |
| GCATTATATTGTATATTATT+CGG | 0.323236 | 5.1:+13232008 | MS.gene010624:CDS |
| TCCTATGCTGCTGCAAGATA+TGG | 0.340951 | 5.1:+13231300 | MS.gene010624:CDS |
| AAAATGACAGTGGTTTAAAA+TGG | 0.346990 | 5.1:+13232503 | MS.gene010624:CDS |
| GCCTGAACAATAGAAATTAT+AGG | 0.356271 | 5.1:-13229903 | None:intergenic |
| TCTTTCACTGGCTGTGGTGC+TGG | 0.357369 | 5.1:-13229256 | None:intergenic |
| GGAGTAGGTGCTTTGTTTAG+TGG | 0.360576 | 5.1:+13231484 | MS.gene010624:CDS |
| TTAATGCAATATTGAATTCC+AGG | 0.362670 | 5.1:-13229286 | None:intergenic |
| TATGTAGCTTCTGCTGGTCT+TGG | 0.364528 | 5.1:+13232143 | MS.gene010624:intron |
| CCTTGTATAATGGAGATGTT+AGG | 0.371185 | 5.1:+13232539 | MS.gene010624:CDS |
| ACTTCCCGCATTAATTGTTA+TGG | 0.374458 | 5.1:+13230590 | MS.gene010624:CDS |
| CGATTGCCAATTGTAGTTGT+TGG | 0.376597 | 5.1:+13229861 | MS.gene010624:CDS |
| GAGAAGTTTACCTTGTATAA+TGG | 0.377457 | 5.1:+13232529 | MS.gene010624:CDS |
| GCCTCCACCACCACCTTCAT+TGG | 0.391683 | 5.1:-13229185 | None:intergenic |
| TGACAAAACATGGCTCAAAA+TGG | 0.404370 | 5.1:+13229139 | None:intergenic |
| TATGAACCAACAACTACAAT+TGG | 0.405084 | 5.1:-13229867 | None:intergenic |
| CAATATAATGCTGCTATGAT+TGG | 0.408090 | 5.1:-13231996 | None:intergenic |
| CAGCATTACCTTCTAACTCT+TGG | 0.411328 | 5.1:+13229615 | MS.gene010624:CDS |
| TATCAGCCGCGGAGCTGGTT+GGG | 0.413972 | 5.1:+13231350 | MS.gene010624:CDS |
| AATATATAGCTTACCCATCT+AGG | 0.414115 | 5.1:-13232293 | None:intergenic |
| GCTTTGTTTAGTGGCATGTT+TGG | 0.416996 | 5.1:+13231493 | MS.gene010624:CDS |
| AGGTGTTATGATCTCTTAAA+GGG | 0.417215 | 5.1:-13232611 | None:intergenic |
| ATGAACAAGAAAGTCCTAGA+TGG | 0.420567 | 5.1:+13232279 | MS.gene010624:CDS |
| AACTGTTGAGATTACAGAAC+TGG | 0.421797 | 5.1:-13232172 | None:intergenic |
| TCTATTATCAGCCGCGGAGC+TGG | 0.422496 | 5.1:+13231345 | MS.gene010624:CDS |
| ATTTGAGGAACAATTATAGT+TGG | 0.426537 | 5.1:-13229654 | None:intergenic |
| GAAGGTGGTGGTGGAGGCGG+CGG | 0.426596 | 5.1:+13229190 | MS.gene010624:CDS |
| ACATTTCTTCAATCTTTGTT+CGG | 0.429936 | 5.1:+13229834 | MS.gene010624:CDS |
| GCAGGTCAAGCAGTGATATT+GGG | 0.430172 | 5.1:+13229588 | MS.gene010624:intron |
| CAGACACTTCTGTTTGTGTC+TGG | 0.433279 | 5.1:+13229804 | MS.gene010624:CDS |
| CAATGTAGGCTGAGAAGACT+AGG | 0.435755 | 5.1:+13229775 | MS.gene010624:intron |
| TTACTAGCATTAACAAAAGT+AGG | 0.438242 | 5.1:+13231675 | MS.gene010624:CDS |
| AGCGCGATCAGTTCGGCAAC+TGG | 0.440761 | 5.1:-13230913 | None:intergenic |
| AATGAAGGTGGTGGTGGAGG+CGG | 0.442126 | 5.1:+13229187 | MS.gene010624:CDS |
| ACATCTCCTCCACCCATTTG+AGG | 0.445664 | 5.1:-13229669 | None:intergenic |
| CCAGGTAATTGCTCTTTCAC+TGG | 0.449256 | 5.1:-13229268 | None:intergenic |
| ACTATAATTGTTCCTCAAAT+GGG | 0.450386 | 5.1:+13229657 | MS.gene010624:CDS |
| TTATCAGCCGCGGAGCTGGT+TGG | 0.454021 | 5.1:+13231349 | MS.gene010624:CDS |
| CTGTAATGCCAAGAGTTAGA+AGG | 0.457456 | 5.1:-13229623 | None:intergenic |
| GCTCCGCGGCTGATAATAGA+AGG | 0.458220 | 5.1:-13231342 | None:intergenic |
| TATTTACTGTCACAATTACA+TGG | 0.459016 | 5.1:+13230829 | MS.gene010624:CDS |
| GCCAATGAAGGTGGTGGTGG+AGG | 0.466316 | 5.1:+13229184 | MS.gene010624:CDS |
| GTTCCATATGTAACTTTCGC+TGG | 0.467362 | 5.1:+13230426 | MS.gene010624:CDS |
| AGAGTAATTCAAATTTCAGC+TGG | 0.468569 | 5.1:+13231705 | MS.gene010624:CDS |
| TGGAACTATGTAGCTTCTGC+TGG | 0.469454 | 5.1:+13232137 | MS.gene010624:intron |
| CATAAGTTCAAGTTTCCAAA+TGG | 0.478916 | 5.1:+13230076 | MS.gene010624:CDS |
| TTATGATCTCTTAAAGGGCT+GGG | 0.481196 | 5.1:-13232606 | None:intergenic |
| ACATATAACTGTTGCTGCAT+TGG | 0.483909 | 5.1:+13232432 | MS.gene010624:CDS |
| GTTATGATCTCTTAAAGGGC+TGG | 0.486418 | 5.1:-13232607 | None:intergenic |
| TATGTAACTTTCGCTGGACT+CGG | 0.490704 | 5.1:+13230432 | MS.gene010624:CDS |
| ATGACAGTGGTTTAAAATGG+TGG | 0.494146 | 5.1:+13232506 | MS.gene010624:CDS |
| CCAGTGAAAGAGCAATTACC+TGG | 0.496122 | 5.1:+13229268 | MS.gene010624:CDS |
| ACATATGGAACTACAGATAG+TGG | 0.498392 | 5.1:-13230414 | None:intergenic |
| AATTGCTCTTTCACTGGCTG+TGG | 0.501886 | 5.1:-13229262 | None:intergenic |
| AGTCCAGCGAAAGTTACATA+TGG | 0.513298 | 5.1:-13230429 | None:intergenic |
| CTTACCATGGAGCGGTGGTA+AGG | 0.514053 | 5.1:-13230941 | None:intergenic |
| GGATTCCAGCGCGATCAGTT+CGG | 0.515737 | 5.1:-13230920 | None:intergenic |
| AATGCTGCTATGATTGGTAA+AGG | 0.516664 | 5.1:-13231990 | None:intergenic |
| CTGATAATAGAAGGCGGCAC+CGG | 0.517220 | 5.1:-13231333 | None:intergenic |
| ATGACAATGAGAGGGATTCA+AGG | 0.519356 | 5.1:+13230044 | MS.gene010624:CDS |
| GTGTACTAACGCCATGGAGG+TGG | 0.522538 | 5.1:-13229313 | None:intergenic |
| CAGTAAATAGCACTGCAAAT+CGG | 0.524244 | 5.1:-13230815 | None:intergenic |
| TAGGACTTCCCCATTGGAAA+GGG | 0.527990 | 5.1:-13231115 | None:intergenic |
| CTTCCCCATTGGAAAGGGTA+AGG | 0.533419 | 5.1:-13231110 | None:intergenic |
| TGAAAGTAGGACTTCCCCAT+TGG | 0.535521 | 5.1:-13231121 | None:intergenic |
| TGAATATACAGATCCTTATG+AGG | 0.535943 | 5.1:+13229938 | MS.gene010624:CDS |
| GCTGCCAATGAAGGTGGTGG+TGG | 0.538131 | 5.1:+13229181 | MS.gene010624:CDS |
| TCTTCCTGCAGTATCTTCAT+CGG | 0.544295 | 5.1:+13230763 | MS.gene010624:intron |
| CCTAACATCTCCATTATACA+AGG | 0.547749 | 5.1:-13232539 | None:intergenic |
| TGACAGTGGTTTAAAATGGT+GGG | 0.549048 | 5.1:+13232507 | MS.gene010624:CDS |
| GCTTCCAAAACATTGAAAGT+AGG | 0.550456 | 5.1:-13231134 | None:intergenic |
| TTCAGAACCAAATTTGTGCT+AGG | 0.556517 | 5.1:+13232194 | MS.gene010624:CDS |
| TGAACAAGAAAGTCCTAGAT+GGG | 0.558213 | 5.1:+13232280 | MS.gene010624:CDS |
| TCCATATCTTGCAGCAGCAT+AGG | 0.561582 | 5.1:-13231301 | None:intergenic |
| GACACCAAAGCTGCCAATGA+AGG | 0.570835 | 5.1:+13229172 | MS.gene010624:CDS |
| GGACTCGGTCTCTATCAACT+TGG | 0.572049 | 5.1:+13230447 | MS.gene010624:CDS |
| AAAACCATAACAATTAATGC+GGG | 0.575797 | 5.1:-13230594 | None:intergenic |
| TGACTTGTTGTTATATGCAG+TGG | 0.579646 | 5.1:-13230877 | None:intergenic |
| CTATCAACTTGGTTTCCCAA+TGG | 0.581145 | 5.1:+13230458 | MS.gene010624:CDS |
| TTGTGAGAAATATTGTGGTA+TGG | 0.582535 | 5.1:-13232240 | None:intergenic |
| GTAGGACTTCCCCATTGGAA+AGG | 0.582640 | 5.1:-13231116 | None:intergenic |
| GAACTACAGATAGTGGACTA+AGG | 0.587103 | 5.1:-13230407 | None:intergenic |
| ATTGTTCCTCAAATGGGTGG+AGG | 0.596097 | 5.1:+13229663 | MS.gene010624:CDS |
| GAATCCTTACCACCGCTCCA+TGG | 0.596795 | 5.1:+13230937 | MS.gene010624:CDS |
| GCATTAACAGTCCACCTCCA+TGG | 0.596854 | 5.1:+13229302 | MS.gene010624:CDS |
| AACATGGCTCAAAATGGAGG+TGG | 0.597871 | 5.1:+13229145 | None:intergenic |
| AGGTTTACTATGACAATGAG+AGG | 0.600380 | 5.1:+13230035 | MS.gene010624:CDS |
| AAAAGCTCATTGAGTCTGCA+AGG | 0.601036 | 5.1:-13232583 | None:intergenic |
| AGTTGCCGAACTGATCGCGC+TGG | 0.602623 | 5.1:+13230915 | MS.gene010624:CDS |
| GAAAACCATAACAATTAATG+CGG | 0.604338 | 5.1:-13230595 | None:intergenic |
| GGTTTACTATGACAATGAGA+GGG | 0.606294 | 5.1:+13230036 | MS.gene010624:CDS |
| AAATATTGTGAGAAATATTG+TGG | 0.606956 | 5.1:-13232245 | None:intergenic |
| ATAATTGTTCCTCAAATGGG+TGG | 0.610258 | 5.1:+13229660 | MS.gene010624:CDS |
| CAGCCGCGGAGCTGGTTGGG+TGG | 0.617485 | 5.1:+13231353 | MS.gene010624:CDS |
| CCGCCTTCTATTATCAGCCG+CGG | 0.618383 | 5.1:+13231339 | MS.gene010624:CDS |
| CAAAACATGGCTCAAAATGG+AGG | 0.619091 | 5.1:+13229142 | None:intergenic |
| AATAGAAGGCGGCACCGGCG+TGG | 0.625499 | 5.1:-13231328 | None:intergenic |
| AATGTAGGCTGAGAAGACTA+GGG | 0.641878 | 5.1:+13229776 | MS.gene010624:intron |
| AACTTAATCTTACCATGGAG+CGG | 0.649594 | 5.1:-13230949 | None:intergenic |
| TTAATCTTACCATGGAGCGG+TGG | 0.654527 | 5.1:-13230946 | None:intergenic |
| AAGATATGGAAGTGCCACGC+CGG | 0.655847 | 5.1:+13231314 | MS.gene010624:CDS |
| TTTCCTTACCCTTTCCAATG+GGG | 0.665262 | 5.1:+13231107 | MS.gene010624:CDS |
| AAAGCTGCCAATGAAGGTGG+TGG | 0.665648 | 5.1:+13229178 | MS.gene010624:CDS |
| CCGCGGCTGATAATAGAAGG+CGG | 0.690209 | 5.1:-13231339 | None:intergenic |
| ACCAAAGCTGCCAATGAAGG+TGG | 0.697056 | 5.1:+13229175 | MS.gene010624:CDS |
| ATACCACCCAACCAGCTCCG+CGG | 0.707287 | 5.1:-13231356 | None:intergenic |
| TAGGTGTACTAACGCCATGG+AGG | 0.753213 | 5.1:-13229316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTTAAATAGAATAAT+GGG | + | chr5.1:13230684-13230703 | MS.gene010624:intron | 10.0% |
| !! | TAAATTGTTAAATAGAATAA+TGG | + | chr5.1:13230683-13230702 | MS.gene010624:intron | 10.0% |
| !! | AATAGTATTAATGAACAAAA+TGG | + | chr5.1:13229745-13229764 | MS.gene010624:intron | 15.0% |
| !! | GAAATTAGTACAAATAATAT+TGG | - | chr5.1:13231769-13231788 | None:intergenic | 15.0% |
| !! | GCATTATATTGTATATTATT+CGG | + | chr5.1:13232008-13232027 | MS.gene010624:CDS | 15.0% |
| !! | TTGTTATCTTATATGTTTAT+TGG | + | chr5.1:13230185-13230204 | MS.gene010624:intron | 15.0% |
| !!! | CTTAACAATATTTGTTAATT+TGG | + | chr5.1:13232117-13232136 | MS.gene010624:intron | 15.0% |
| !! | AAATATTGTGAGAAATATTG+TGG | - | chr5.1:13232248-13232267 | None:intergenic | 20.0% |
| !! | TAAGAAGCAAAAAATCAAAA+GGG | - | chr5.1:13230511-13230530 | None:intergenic | 20.0% |
| !! | TAGTAACTATAAGTTAAGAT+AGG | - | chr5.1:13229338-13229357 | None:intergenic | 20.0% |
| !! | TGAGTAATATAATGACTAAA+AGG | - | chr5.1:13231242-13231261 | None:intergenic | 20.0% |
| !! | TTAAGAAGCAAAAAATCAAA+AGG | - | chr5.1:13230512-13230531 | None:intergenic | 20.0% |
| !! | TTATCTTATATGTTTATTGG+AGG | + | chr5.1:13230188-13230207 | MS.gene010624:intron | 20.0% |
| !!! | AACTCTAATTAATTTTGCTA+AGG | - | chr5.1:13231214-13231233 | None:intergenic | 20.0% |
| !!! | ATCTTTGATAATTGTTATCT+TGG | - | chr5.1:13230319-13230338 | None:intergenic | 20.0% |
| !!! | TAATTTTGCTAAGGATTTAA+GGG | - | chr5.1:13231205-13231224 | None:intergenic | 20.0% |
| !!! | TCATTCTTGTTTTGATTTTA+GGG | + | chr5.1:13231463-13231482 | MS.gene010624:intron | 20.0% |
| !!! | TTAATTTTGCTAAGGATTTA+AGG | - | chr5.1:13231206-13231225 | None:intergenic | 20.0% |
| !!! | TTGATTTTTATGTAATTCAC+AGG | + | chr5.1:13230382-13230401 | MS.gene010624:intron | 20.0% |
| !!! | TTTTAGTCATTATATTACTC+AGG | + | chr5.1:13231241-13231260 | MS.gene010624:intron | 20.0% |
| ! | AAAAAAAGAGTAAAGCAGAA+AGG | - | chr5.1:13231638-13231657 | None:intergenic | 25.0% |
| ! | AAAACCATAACAATTAATGC+GGG | - | chr5.1:13230597-13230616 | None:intergenic | 25.0% |
| ! | AAAATGACAGTGGTTTAAAA+TGG | + | chr5.1:13232503-13232522 | MS.gene010624:CDS | 25.0% |
| ! | AAAATGGTTTGATTCAATGT+AGG | + | chr5.1:13229761-13229780 | MS.gene010624:intron | 25.0% |
| ! | AACTATAATTGTTCCTCAAA+TGG | + | chr5.1:13229656-13229675 | MS.gene010624:CDS | 25.0% |
| ! | ACATTTCTTCAATCTTTGTT+CGG | + | chr5.1:13229834-13229853 | MS.gene010624:CDS | 25.0% |
| ! | ACCTATAATTTCTATTGTTC+AGG | + | chr5.1:13229902-13229921 | MS.gene010624:CDS | 25.0% |
| ! | ACTATAATTGTTCCTCAAAT+GGG | + | chr5.1:13229657-13229676 | MS.gene010624:CDS | 25.0% |
| ! | ATAGTTTCATTTACCTCATA+AGG | - | chr5.1:13229954-13229973 | None:intergenic | 25.0% |
| ! | ATTTCATAATTTCAGCATCT+TGG | + | chr5.1:13231784-13231803 | MS.gene010624:intron | 25.0% |
| ! | ATTTGAGGAACAATTATAGT+TGG | - | chr5.1:13229657-13229676 | None:intergenic | 25.0% |
| ! | GAAAACCATAACAATTAATG+CGG | - | chr5.1:13230598-13230617 | None:intergenic | 25.0% |
| ! | TAAATCTTTGATCATAATGC+AGG | + | chr5.1:13229570-13229589 | MS.gene010624:intron | 25.0% |
| ! | TATGAAACTTAATCTTACCA+TGG | - | chr5.1:13230957-13230976 | None:intergenic | 25.0% |
| ! | TATTTACTGTCACAATTACA+TGG | + | chr5.1:13230829-13230848 | MS.gene010624:CDS | 25.0% |
| ! | TTAATGCAATATTGAATTCC+AGG | - | chr5.1:13229289-13229308 | None:intergenic | 25.0% |
| ! | TTACAAGTTCCAACAAATTA+AGG | - | chr5.1:13229375-13229394 | None:intergenic | 25.0% |
| ! | TTACTAGCATTAACAAAAGT+AGG | + | chr5.1:13231675-13231694 | MS.gene010624:CDS | 25.0% |
| !! | ATGATTTTCTTCTCTGTATT+TGG | + | chr5.1:13231732-13231751 | MS.gene010624:CDS | 25.0% |
| !! | ATTTTTGCTTAAGATAGTAC+TGG | + | chr5.1:13229534-13229553 | MS.gene010624:intron | 25.0% |
| !!! | CTATTGGATTTTTTGGTTTT+TGG | + | chr5.1:13230099-13230118 | MS.gene010624:CDS | 25.0% |
| !!! | GTCATTCTTGTTTTGATTTT+AGG | + | chr5.1:13231462-13231481 | MS.gene010624:intron | 25.0% |
| !!! | TGCTTTACTCTTTTTTTTCA+GGG | + | chr5.1:13231641-13231660 | MS.gene010624:intron | 25.0% |
| !!! | TTAACTTGTGATCTGTTAAA+GGG | + | chr5.1:13231600-13231619 | MS.gene010624:intron | 25.0% |
| !!! | TTCACTTTTCCTTAATTTGT+TGG | + | chr5.1:13229363-13229382 | MS.gene010624:intron | 25.0% |
| !!! | TTCTTTAGTTTCTCTTTTTG+AGG | + | chr5.1:13231175-13231194 | MS.gene010624:CDS | 25.0% |
| AAAAACACACACAAGGAATT+AGG | - | chr5.1:13231556-13231575 | None:intergenic | 30.0% | |
| AAAACACACACAAGGAATTA+GGG | - | chr5.1:13231555-13231574 | None:intergenic | 30.0% | |
| AATATATAGCTTACCCATCT+AGG | - | chr5.1:13232296-13232315 | None:intergenic | 30.0% | |
| AATCCTCAATTCTTTACCAT+TGG | - | chr5.1:13230477-13230496 | None:intergenic | 30.0% | |
| ACCATTGAAACAGGAAAATT+TGG | + | chr5.1:13231948-13231967 | MS.gene010624:intron | 30.0% | |
| AGAGTAATTCAAATTTCAGC+TGG | + | chr5.1:13231705-13231724 | MS.gene010624:CDS | 30.0% | |
| ATCCTCAATTCTTTACCATT+GGG | - | chr5.1:13230476-13230495 | None:intergenic | 30.0% | |
| CAAAAAATCCAATAGCCATT+TGG | - | chr5.1:13230094-13230113 | None:intergenic | 30.0% | |
| CAATATAATGCTGCTATGAT+TGG | - | chr5.1:13231999-13232018 | None:intergenic | 30.0% | |
| CCAGATCTGTTTAAATAGTA+TGG | + | chr5.1:13230710-13230729 | MS.gene010624:intron | 30.0% | |
| CCATACTATTTAAACAGATC+TGG | - | chr5.1:13230713-13230732 | None:intergenic | 30.0% | |
| CTGTTTCAATGGTAAATAAC+AGG | - | chr5.1:13231941-13231960 | None:intergenic | 30.0% | |
| GACATAACATTAGTTATTCC+AGG | - | chr5.1:13231906-13231925 | None:intergenic | 30.0% | |
| GACTTATAGCCAATAAAACA+CGG | + | chr5.1:13231841-13231860 | MS.gene010624:intron | 30.0% | |
| GAGAAGTTTACCTTGTATAA+TGG | + | chr5.1:13232529-13232548 | MS.gene010624:CDS | 30.0% | |
| GCCTGAACAATAGAAATTAT+AGG | - | chr5.1:13229906-13229925 | None:intergenic | 30.0% | |
| TATGAACCAACAACTACAAT+TGG | - | chr5.1:13229870-13229889 | None:intergenic | 30.0% | |
| TGAATATACAGATCCTTATG+AGG | + | chr5.1:13229938-13229957 | MS.gene010624:CDS | 30.0% | |
| TGTTTGTTTGAATTTCCTAG+AGG | + | chr5.1:13230015-13230034 | MS.gene010624:intron | 30.0% | |
| TTCAAGAAAAAACACACACA+AGG | - | chr5.1:13231563-13231582 | None:intergenic | 30.0% | |
| TTGTGAGAAATATTGTGGTA+TGG | - | chr5.1:13232243-13232262 | None:intergenic | 30.0% | |
| ! | AAAGTGTTTCCATTTATGCA+GGG | + | chr5.1:13231079-13231098 | MS.gene010624:intron | 30.0% |
| ! | AAGTCCTACTTTCAATGTTT+TGG | + | chr5.1:13231130-13231149 | MS.gene010624:CDS | 30.0% |
| ! | CATAAGTTCAAGTTTCCAAA+TGG | + | chr5.1:13230076-13230095 | MS.gene010624:CDS | 30.0% |
| ! | CTGTTATTTACCATTGAAAC+AGG | + | chr5.1:13231939-13231958 | MS.gene010624:intron | 30.0% |
| ! | TAATAATCTATGTGCTGTTG+TGG | + | chr5.1:13232071-13232090 | MS.gene010624:intron | 30.0% |
| ! | TCCAAATTTTCCTGTTTCAA+TGG | - | chr5.1:13231952-13231971 | None:intergenic | 30.0% |
| !! | AAAAGTGTTTCCATTTATGC+AGG | + | chr5.1:13231078-13231097 | MS.gene010624:intron | 30.0% |
| !! | GTTAACTTGTGATCTGTTAA+AGG | + | chr5.1:13231599-13231618 | MS.gene010624:intron | 30.0% |
| !!! | CAAATGGCTATTGGATTTTT+TGG | + | chr5.1:13230092-13230111 | MS.gene010624:CDS | 30.0% |
| !!! | CTGCTTTACTCTTTTTTTTC+AGG | + | chr5.1:13231640-13231659 | MS.gene010624:intron | 30.0% |
| !!! | TGCATTGGTTGCATTAATTT+TGG | + | chr5.1:13232447-13232466 | MS.gene010624:CDS | 30.0% |
| !!! | TGTGTTTTTTCTTGAATGCA+TGG | + | chr5.1:13231567-13231586 | MS.gene010624:intron | 30.0% |
| !!! | TTGTTTTGATTTTAGGGAGT+AGG | + | chr5.1:13231469-13231488 | MS.gene010624:intron | 30.0% |
| !!! | TTTTTTTTCAGGGAAAATGC+TGG | + | chr5.1:13231651-13231670 | MS.gene010624:intron | 30.0% |
| AAAACCATCAAACATGCACT+AGG | - | chr5.1:13230736-13230755 | None:intergenic | 35.0% | |
| AACTGTTGAGATTACAGAAC+TGG | - | chr5.1:13232175-13232194 | None:intergenic | 35.0% | |
| AACTTAATCTTACCATGGAG+CGG | - | chr5.1:13230952-13230971 | None:intergenic | 35.0% | |
| AATGCTGCTATGATTGGTAA+AGG | - | chr5.1:13231993-13232012 | None:intergenic | 35.0% | |
| ACATATAACTGTTGCTGCAT+TGG | + | chr5.1:13232432-13232451 | MS.gene010624:CDS | 35.0% | |
| ACATATGGAACTACAGATAG+TGG | - | chr5.1:13230417-13230436 | None:intergenic | 35.0% | |
| ACTTCCCGCATTAATTGTTA+TGG | + | chr5.1:13230590-13230609 | MS.gene010624:CDS | 35.0% | |
| AGCAACTAGTATGTTGCAAA+AGG | + | chr5.1:13230650-13230669 | MS.gene010624:intron | 35.0% | |
| AGGTTTACTATGACAATGAG+AGG | + | chr5.1:13230035-13230054 | MS.gene010624:CDS | 35.0% | |
| ATAATTGTTCCTCAAATGGG+TGG | + | chr5.1:13229660-13229679 | MS.gene010624:CDS | 35.0% | |
| ATGAACAAGAAAGTCCTAGA+TGG | + | chr5.1:13232279-13232298 | MS.gene010624:CDS | 35.0% | |
| CAGTAAATAGCACTGCAAAT+CGG | - | chr5.1:13230818-13230837 | None:intergenic | 35.0% | |
| CATTGTCATAGTAAACCTCT+AGG | - | chr5.1:13230033-13230052 | None:intergenic | 35.0% | |
| CCTAACATCTCCATTATACA+AGG | - | chr5.1:13232542-13232561 | None:intergenic | 35.0% | |
| CGATTTCAATAGACGTTACA+AGG | - | chr5.1:13230362-13230381 | None:intergenic | 35.0% | |
| GAAAATACACCCTGCATAAA+TGG | - | chr5.1:13231091-13231110 | None:intergenic | 35.0% | |
| GCTTCCAAAACATTGAAAGT+AGG | - | chr5.1:13231137-13231156 | None:intergenic | 35.0% | |
| GGTTTACTATGACAATGAGA+GGG | + | chr5.1:13230036-13230055 | MS.gene010624:CDS | 35.0% | |
| TAATTTCAGCATCTTGGCAT+TGG | + | chr5.1:13231790-13231809 | MS.gene010624:intron | 35.0% | |
| TCAAGTTTCCAAATGGCTAT+TGG | + | chr5.1:13230083-13230102 | MS.gene010624:CDS | 35.0% | |
| TGAACAAGAAAGTCCTAGAT+GGG | + | chr5.1:13232280-13232299 | MS.gene010624:CDS | 35.0% | |
| TTCAGAACCAAATTTGTGCT+AGG | + | chr5.1:13232194-13232213 | MS.gene010624:CDS | 35.0% | |
| TTCCCAATGGTAAAGAATTG+AGG | + | chr5.1:13230471-13230490 | MS.gene010624:intron | 35.0% | |
| ! | ATGACAGTGGTTTAAAATGG+TGG | + | chr5.1:13232506-13232525 | MS.gene010624:CDS | 35.0% |
| ! | ATTGGTAGTTTACTCGTTTG+TGG | + | chr5.1:13231808-13231827 | MS.gene010624:intron | 35.0% |
| ! | ATTTTCCTTACCCTTTCCAA+TGG | + | chr5.1:13231105-13231124 | MS.gene010624:CDS | 35.0% |
| ! | CCTTGTATAATGGAGATGTT+AGG | + | chr5.1:13232539-13232558 | MS.gene010624:CDS | 35.0% |
| ! | TGACAGTGGTTTAAAATGGT+GGG | + | chr5.1:13232507-13232526 | MS.gene010624:CDS | 35.0% |
| ! | TGTTATGGTTTTCATCTCAC+AGG | + | chr5.1:13230605-13230624 | MS.gene010624:CDS | 35.0% |
| ! | TGTTTGTGTCCGTGTTTTAT+TGG | - | chr5.1:13231853-13231872 | None:intergenic | 35.0% |
| ! | TTTTCCTTACCCTTTCCAAT+GGG | + | chr5.1:13231106-13231125 | MS.gene010624:CDS | 35.0% |
| ! | TTTTCTTGAATGCATGGTAG+AGG | + | chr5.1:13231573-13231592 | MS.gene010624:intron | 35.0% |
| !! | TGACTTGTTGTTATATGCAG+TGG | - | chr5.1:13230880-13230899 | None:intergenic | 35.0% |
| !! | TTGTTTTACTTGCAGTACAC+TGG | + | chr5.1:13231273-13231292 | MS.gene010624:intron | 35.0% |
| !! | TTTGGAAGCTTTTGCTATGA+TGG | + | chr5.1:13231148-13231167 | MS.gene010624:CDS | 35.0% |
| AAAAGCTCATTGAGTCTGCA+AGG | - | chr5.1:13232586-13232605 | None:intergenic | 40.0% | |
| AAGATTTACATCTCCTCCAC+AGG | + | chr5.1:13230334-13230353 | MS.gene010624:intron | 40.0% | |
| AATGTAGGCTGAGAAGACTA+GGG | + | chr5.1:13229776-13229795 | MS.gene010624:intron | 40.0% | |
| ACTCGTTTGTGGTTGTCTAT+AGG | + | chr5.1:13231819-13231838 | MS.gene010624:intron | 40.0% | |
| AGTCCAGCGAAAGTTACATA+TGG | - | chr5.1:13230432-13230451 | None:intergenic | 40.0% | |
| ATGACAATGAGAGGGATTCA+AGG | + | chr5.1:13230044-13230063 | MS.gene010624:CDS | 40.0% | |
| CAGCATTACCTTCTAACTCT+TGG | + | chr5.1:13229615-13229634 | MS.gene010624:CDS | 40.0% | |
| CGATTGCCAATTGTAGTTGT+TGG | + | chr5.1:13229861-13229880 | MS.gene010624:CDS | 40.0% | |
| CTAGGCTTCTCATTCTTCTT+AGG | + | chr5.1:13232212-13232231 | MS.gene010624:CDS | 40.0% | |
| CTATCAACTTGGTTTCCCAA+TGG | + | chr5.1:13230458-13230477 | MS.gene010624:CDS | 40.0% | |
| CTGTAATGCCAAGAGTTAGA+AGG | - | chr5.1:13229626-13229645 | None:intergenic | 40.0% | |
| CTTGCGAAATGCGTTGAAAT+TGG | + | chr5.1:13230567-13230586 | MS.gene010624:CDS | 40.0% | |
| GATGCAGCTAAAAATGACAG+TGG | + | chr5.1:13232493-13232512 | MS.gene010624:CDS | 40.0% | |
| GTTCCATATGTAACTTTCGC+TGG | + | chr5.1:13230426-13230445 | MS.gene010624:CDS | 40.0% | |
| TATACCGATGAAGATACTGC+AGG | - | chr5.1:13230770-13230789 | None:intergenic | 40.0% | |
| TATGTAACTTTCGCTGGACT+CGG | + | chr5.1:13230432-13230451 | MS.gene010624:CDS | 40.0% | |
| TCTTCCTGCAGTATCTTCAT+CGG | + | chr5.1:13230763-13230782 | MS.gene010624:intron | 40.0% | |
| TGAGAAGCCTAGCACAAATT+TGG | - | chr5.1:13232204-13232223 | None:intergenic | 40.0% | |
| TTTCCTTACCCTTTCCAATG+GGG | + | chr5.1:13231107-13231126 | MS.gene010624:CDS | 40.0% | |
| !! | GAACTACAGATAGTGGACTA+AGG | - | chr5.1:13230410-13230429 | None:intergenic | 40.0% |
| !! | GCTTTGTTTAGTGGCATGTT+TGG | + | chr5.1:13231493-13231512 | MS.gene010624:CDS | 40.0% |
| !! | GTTTTTGGAGAAATGCTGTC+AGG | + | chr5.1:13230114-13230133 | MS.gene010624:CDS | 40.0% |
| AGATAGGTGTACTAACGCCA+TGG | - | chr5.1:13229322-13229341 | None:intergenic | 45.0% | |
| ATGGCCTAGTGCATGTTTGA+TGG | + | chr5.1:13230729-13230748 | MS.gene010624:intron | 45.0% | |
| ATTGTTCCTCAAATGGGTGG+AGG | + | chr5.1:13229663-13229682 | MS.gene010624:CDS | 45.0% | |
| CAATGTAGGCTGAGAAGACT+AGG | + | chr5.1:13229775-13229794 | MS.gene010624:intron | 45.0% | |
| CAGACACTTCTGTTTGTGTC+TGG | + | chr5.1:13229804-13229823 | MS.gene010624:CDS | 45.0% | |
| CCAGGTAATTGCTCTTTCAC+TGG | - | chr5.1:13229271-13229290 | None:intergenic | 45.0% | |
| CCAGTGAAAGAGCAATTACC+TGG | + | chr5.1:13229268-13229287 | MS.gene010624:CDS | 45.0% | |
| GCAGGTCAAGCAGTGATATT+GGG | + | chr5.1:13229588-13229607 | MS.gene010624:intron | 45.0% | |
| GGCATGTTTGGTTGTGTAAC+TGG | + | chr5.1:13231505-13231524 | MS.gene010624:CDS | 45.0% | |
| TAGACGTTACAAGGAACCTG+TGG | - | chr5.1:13230353-13230372 | None:intergenic | 45.0% | |
| TAGGACTTCCCCATTGGAAA+GGG | - | chr5.1:13231118-13231137 | None:intergenic | 45.0% | |
| TATTCCAGGTGTCTGTGTGT+CGG | - | chr5.1:13231892-13231911 | None:intergenic | 45.0% | |
| TCCATATCTTGCAGCAGCAT+AGG | - | chr5.1:13231304-13231323 | None:intergenic | 45.0% | |
| TCCTATGCTGCTGCAAGATA+TGG | + | chr5.1:13231300-13231319 | MS.gene010624:CDS | 45.0% | |
| TGAAAGTAGGACTTCCCCAT+TGG | - | chr5.1:13231124-13231143 | None:intergenic | 45.0% | |
| TGCAGGTCAAGCAGTGATAT+TGG | + | chr5.1:13229587-13229606 | MS.gene010624:intron | 45.0% | |
| TGGAACTATGTAGCTTCTGC+TGG | + | chr5.1:13232137-13232156 | MS.gene010624:intron | 45.0% | |
| TTAATCTTACCATGGAGCGG+TGG | - | chr5.1:13230949-13230968 | None:intergenic | 45.0% | |
| ! | AATTGCTCTTTCACTGGCTG+TGG | - | chr5.1:13229265-13229284 | None:intergenic | 45.0% |
| ! | TATGTAGCTTCTGCTGGTCT+TGG | + | chr5.1:13232143-13232162 | MS.gene010624:intron | 45.0% |
| !! | GGAGTAGGTGCTTTGTTTAG+TGG | + | chr5.1:13231484-13231503 | MS.gene010624:CDS | 45.0% |
| AAAGCTGCCAATGAAGGTGG+TGG | + | chr5.1:13229178-13229197 | MS.gene010624:CDS | 50.0% | |
| ACATCTCCTCCACCCATTTG+AGG | - | chr5.1:13229672-13229691 | None:intergenic | 50.0% | |
| ACCAAAGCTGCCAATGAAGG+TGG | + | chr5.1:13229175-13229194 | MS.gene010624:CDS | 50.0% | |
| ACCACCTTCATTGGCAGCTT+TGG | - | chr5.1:13229179-13229198 | None:intergenic | 50.0% | |
| ACGTTACAAGGAACCTGTGG+AGG | - | chr5.1:13230350-13230369 | None:intergenic | 50.0% | |
| CTGATAATAGAAGGCGGCAC+CGG | - | chr5.1:13231336-13231355 | None:intergenic | 50.0% | |
| CTTCCCCATTGGAAAGGGTA+AGG | - | chr5.1:13231113-13231132 | None:intergenic | 50.0% | |
| GACACCAAAGCTGCCAATGA+AGG | + | chr5.1:13229172-13229191 | MS.gene010624:CDS | 50.0% | |
| GCATTAACAGTCCACCTCCA+TGG | + | chr5.1:13229302-13229321 | MS.gene010624:CDS | 50.0% | |
| GGTGCTAAAAATGCAGGTGG+TGG | + | chr5.1:13229211-13229230 | MS.gene010624:CDS | 50.0% | |
| GTAGGACTTCCCCATTGGAA+AGG | - | chr5.1:13231119-13231138 | None:intergenic | 50.0% | |
| TAGGTGTACTAACGCCATGG+AGG | - | chr5.1:13229319-13229338 | None:intergenic | 50.0% | |
| ! | GGACTCGGTCTCTATCAACT+TGG | + | chr5.1:13230447-13230466 | MS.gene010624:CDS | 50.0% |
| !! | AAGATATGGAAGTGCCACGC+CGG | + | chr5.1:13231314-13231333 | MS.gene010624:CDS | 50.0% |
| ACGGACACAAACACGCACAC+GGG | + | chr5.1:13231860-13231879 | MS.gene010624:intron | 55.0% | |
| CACGGACACAAACACGCACA+CGG | + | chr5.1:13231859-13231878 | MS.gene010624:intron | 55.0% | |
| CCGCCTTCTATTATCAGCCG+CGG | + | chr5.1:13231339-13231358 | MS.gene010624:CDS | 55.0% | |
| CCGCGGCTGATAATAGAAGG+CGG | - | chr5.1:13231342-13231361 | None:intergenic | 55.0% | |
| CTTACCATGGAGCGGTGGTA+AGG | - | chr5.1:13230944-13230963 | None:intergenic | 55.0% | |
| GAATCCTTACCACCGCTCCA+TGG | + | chr5.1:13230937-13230956 | MS.gene010624:CDS | 55.0% | |
| GCTCCGCGGCTGATAATAGA+AGG | - | chr5.1:13231345-13231364 | None:intergenic | 55.0% | |
| GGATTCCAGCGCGATCAGTT+CGG | - | chr5.1:13230923-13230942 | None:intergenic | 55.0% | |
| GTGTACTAACGCCATGGAGG+TGG | - | chr5.1:13229316-13229335 | None:intergenic | 55.0% | |
| TCTATTATCAGCCGCGGAGC+TGG | + | chr5.1:13231345-13231364 | MS.gene010624:CDS | 55.0% | |
| ! | GGCGGTGCTAAAAATGCAGG+TGG | + | chr5.1:13229208-13229227 | MS.gene010624:CDS | 55.0% |
| ! | TCTTTCACTGGCTGTGGTGC+TGG | - | chr5.1:13229259-13229278 | None:intergenic | 55.0% |
| !! | AATGAAGGTGGTGGTGGAGG+CGG | + | chr5.1:13229187-13229206 | MS.gene010624:CDS | 55.0% |
| AGCGCGATCAGTTCGGCAAC+TGG | - | chr5.1:13230916-13230935 | None:intergenic | 60.0% | |
| AGTTGCCGAACTGATCGCGC+TGG | + | chr5.1:13230915-13230934 | MS.gene010624:CDS | 60.0% | |
| ATACCACCCAACCAGCTCCG+CGG | - | chr5.1:13231359-13231378 | None:intergenic | 60.0% | |
| GCCTCCACCACCACCTTCAT+TGG | - | chr5.1:13229188-13229207 | None:intergenic | 60.0% | |
| TATCAGCCGCGGAGCTGGTT+GGG | + | chr5.1:13231350-13231369 | MS.gene010624:CDS | 60.0% | |
| TCCAGGTGTCTGTGTGTCGG+CGG | - | chr5.1:13231889-13231908 | None:intergenic | 60.0% | |
| TTATCAGCCGCGGAGCTGGT+TGG | + | chr5.1:13231349-13231368 | MS.gene010624:CDS | 60.0% | |
| ! | GCTGCCAATGAAGGTGGTGG+TGG | + | chr5.1:13229181-13229200 | MS.gene010624:CDS | 60.0% |
| ! | GGCGGCGGTGCTAAAAATGC+AGG | + | chr5.1:13229205-13229224 | MS.gene010624:CDS | 60.0% |
| !! | GCCAATGAAGGTGGTGGTGG+AGG | + | chr5.1:13229184-13229203 | MS.gene010624:CDS | 60.0% |
| ACCGCCGACACACAGACACC+TGG | + | chr5.1:13231885-13231904 | MS.gene010624:intron | 65.0% | |
| !! | AATAGAAGGCGGCACCGGCG+TGG | - | chr5.1:13231331-13231350 | None:intergenic | 65.0% |
| !! | GAAGGTGGTGGTGGAGGCGG+CGG | + | chr5.1:13229190-13229209 | MS.gene010624:CDS | 70.0% |
| CAGCCGCGGAGCTGGTTGGG+TGG | + | chr5.1:13231353-13231372 | MS.gene010624:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 13229148 | 13232618 | 13229148 | ID=MS.gene010624 |
| chr5.1 | mRNA | 13229148 | 13232618 | 13229148 | ID=MS.gene010624.t1;Parent=MS.gene010624 |
| chr5.1 | exon | 13229148 | 13229325 | 13229148 | ID=MS.gene010624.t1.exon1;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13229148 | 13229325 | 13229148 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13229592 | 13229689 | 13229592 | ID=MS.gene010624.t1.exon2;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13229592 | 13229689 | 13229592 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13229783 | 13229959 | 13229783 | ID=MS.gene010624.t1.exon3;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13229783 | 13229959 | 13229783 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13230035 | 13230135 | 13230035 | ID=MS.gene010624.t1.exon4;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13230035 | 13230135 | 13230035 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13230404 | 13230479 | 13230404 | ID=MS.gene010624.t1.exon5;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13230404 | 13230479 | 13230404 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13230567 | 13230626 | 13230567 | ID=MS.gene010624.t1.exon6;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13230567 | 13230626 | 13230567 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13230774 | 13230958 | 13230774 | ID=MS.gene010624.t1.exon7;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13230774 | 13230958 | 13230774 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13231100 | 13231196 | 13231100 | ID=MS.gene010624.t1.exon8;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13231100 | 13231196 | 13231100 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13231288 | 13231374 | 13231288 | ID=MS.gene010624.t1.exon9;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13231288 | 13231374 | 13231288 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13231484 | 13231542 | 13231484 | ID=MS.gene010624.t1.exon10;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13231484 | 13231542 | 13231484 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13231662 | 13231753 | 13231662 | ID=MS.gene010624.t1.exon11;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13231662 | 13231753 | 13231662 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13231961 | 13232038 | 13231961 | ID=MS.gene010624.t1.exon12;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13231961 | 13232038 | 13231961 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13232150 | 13232301 | 13232150 | ID=MS.gene010624.t1.exon13;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13232150 | 13232301 | 13232150 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| chr5.1 | exon | 13232400 | 13232618 | 13232400 | ID=MS.gene010624.t1.exon14;Parent=MS.gene010624.t1 |
| chr5.1 | CDS | 13232400 | 13232618 | 13232400 | ID=cds.MS.gene010624.t1;Parent=MS.gene010624.t1 |
| Gene Sequence |
| Protein sequence |
