Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71606.t1 | XP_013469975.1 | 96.4 | 532 | 14 | 1 | 1 | 532 | 1 | 527 | 4.60E-274 | 953.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71606.t1 | P93039 | 66.3 | 522 | 173 | 2 | 13 | 531 | 4 | 525 | 1.1e-194 | 681.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71606.t1 | A0A072VRF8 | 96.4 | 532 | 14 | 1 | 1 | 532 | 1 | 527 | 3.3e-274 | 953.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene71606 | 0.846548 | 2.03E-59 | -1.69E-46 |
| MS.gene051138 | MS.gene71606 | 0.807131 | 5.87E-50 | -1.69E-46 |
| MS.gene056856 | MS.gene71606 | 0.828269 | 9.87E-55 | -1.69E-46 |
| MS.gene057717 | MS.gene71606 | 0.805469 | 1.32E-49 | -1.69E-46 |
| MS.gene059069 | MS.gene71606 | 0.807388 | 5.18E-50 | -1.69E-46 |
| MS.gene059070 | MS.gene71606 | 0.818316 | 2.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25932 | MS.gene71606 | PPI |
| MS.gene71606 | MS.gene53408 | PPI |
| MS.gene033221 | MS.gene71606 | PPI |
| MS.gene71606 | MS.gene43290 | PPI |
| MS.gene074377 | MS.gene71606 | PPI |
| MS.gene25800 | MS.gene71606 | PPI |
| MS.gene37474 | MS.gene71606 | PPI |
| MS.gene71606 | MS.gene59470 | PPI |
| MS.gene71606 | MS.gene27811 | PPI |
| MS.gene71606 | MS.gene023585 | PPI |
| MS.gene71606 | MS.gene044204 | PPI |
| MS.gene60344 | MS.gene71606 | PPI |
| MS.gene012865 | MS.gene71606 | PPI |
| MS.gene56947 | MS.gene71606 | PPI |
| MS.gene71606 | MS.gene015069 | PPI |
| MS.gene71606 | MS.gene27812 | PPI |
| MS.gene32869 | MS.gene71606 | PPI |
| MS.gene71606 | MS.gene68064 | PPI |
| MS.gene71606 | MS.gene058853 | PPI |
| MS.gene70604 | MS.gene71606 | PPI |
| MS.gene64768 | MS.gene71606 | PPI |
| MS.gene022275 | MS.gene71606 | PPI |
| MS.gene71606 | MS.gene70718 | PPI |
| MS.gene010624 | MS.gene71606 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71606.t1 | MTR_1g106085 | 96.617 | 532 | 13 | 1 | 1 | 532 | 1 | 527 | 0.0 | 1029 |
| MS.gene71606.t1 | MTR_3g078270 | 60.606 | 528 | 205 | 2 | 7 | 531 | 4 | 531 | 0.0 | 665 |
| MS.gene71606.t1 | MTR_8g063220 | 60.377 | 530 | 204 | 3 | 8 | 531 | 3 | 532 | 0.0 | 663 |
| MS.gene71606.t1 | MTR_4g106750 | 59.470 | 528 | 211 | 2 | 7 | 531 | 4 | 531 | 0.0 | 654 |
| MS.gene71606.t1 | MTR_3g103230 | 58.641 | 515 | 207 | 3 | 20 | 531 | 42 | 553 | 0.0 | 636 |
| MS.gene71606.t1 | MTR_5g035180 | 59.656 | 523 | 207 | 4 | 13 | 531 | 15 | 537 | 0.0 | 632 |
| MS.gene71606.t1 | MTR_4g106750 | 59.751 | 482 | 192 | 1 | 52 | 531 | 1 | 482 | 0.0 | 599 |
| MS.gene71606.t1 | MTR_5g022110 | 56.107 | 524 | 222 | 4 | 13 | 531 | 26 | 546 | 0.0 | 595 |
| MS.gene71606.t1 | MTR_8g086520 | 54.111 | 523 | 234 | 3 | 13 | 532 | 5 | 524 | 0.0 | 586 |
| MS.gene71606.t1 | MTR_2g016460 | 54.739 | 517 | 227 | 4 | 20 | 532 | 11 | 524 | 0.0 | 583 |
| MS.gene71606.t1 | MTR_3g080390 | 55.922 | 515 | 221 | 3 | 20 | 530 | 6 | 518 | 0.0 | 567 |
| MS.gene71606.t1 | MTR_1g021120 | 52.242 | 513 | 241 | 3 | 21 | 531 | 36 | 546 | 0.0 | 524 |
| MS.gene71606.t1 | MTR_8g086520 | 55.034 | 447 | 197 | 2 | 13 | 456 | 5 | 450 | 1.07e-176 | 506 |
| MS.gene71606.t1 | MTR_4g106750 | 61.247 | 369 | 141 | 1 | 165 | 531 | 11 | 379 | 8.53e-169 | 483 |
| MS.gene71606.t1 | MTR_8g086520 | 56.683 | 404 | 169 | 3 | 130 | 530 | 6 | 406 | 5.42e-165 | 474 |
| MS.gene71606.t1 | MTR_8g086520 | 53.885 | 399 | 180 | 2 | 13 | 408 | 5 | 402 | 1.12e-151 | 440 |
| MS.gene71606.t1 | MTR_8g068550 | 32.955 | 528 | 302 | 6 | 42 | 529 | 240 | 755 | 1.39e-96 | 310 |
| MS.gene71606.t1 | MTR_5g032020 | 33.083 | 532 | 316 | 6 | 28 | 525 | 168 | 693 | 3.16e-95 | 305 |
| MS.gene71606.t1 | MTR_2g084895 | 33.022 | 536 | 313 | 9 | 32 | 529 | 151 | 678 | 6.95e-90 | 290 |
| MS.gene71606.t1 | MTR_4g055290 | 33.525 | 522 | 298 | 8 | 45 | 529 | 171 | 680 | 1.31e-85 | 279 |
| MS.gene71606.t1 | MTR_2g103510 | 31.569 | 548 | 307 | 13 | 14 | 529 | 80 | 591 | 1.27e-81 | 266 |
| MS.gene71606.t1 | MTR_8g086535 | 64.583 | 96 | 32 | 1 | 315 | 408 | 23 | 118 | 7.14e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene71606.t1 | AT1G49960 | 69.732 | 522 | 155 | 2 | 13 | 531 | 4 | 525 | 0.0 | 720 |
| MS.gene71606.t1 | AT5G62890 | 60.606 | 528 | 205 | 3 | 7 | 531 | 4 | 531 | 0.0 | 656 |
| MS.gene71606.t1 | AT5G62890 | 60.606 | 528 | 205 | 3 | 7 | 531 | 4 | 531 | 0.0 | 656 |
| MS.gene71606.t1 | AT5G62890 | 60.606 | 528 | 205 | 3 | 7 | 531 | 4 | 531 | 0.0 | 656 |
| MS.gene71606.t1 | AT1G60030 | 58.812 | 522 | 212 | 3 | 13 | 531 | 16 | 537 | 0.0 | 644 |
| MS.gene71606.t1 | AT1G10540 | 56.952 | 525 | 220 | 3 | 13 | 531 | 14 | 538 | 0.0 | 628 |
| MS.gene71606.t1 | AT5G49990 | 58.240 | 534 | 213 | 3 | 1 | 531 | 1 | 527 | 0.0 | 612 |
| MS.gene71606.t1 | AT5G49990 | 58.240 | 534 | 213 | 3 | 1 | 531 | 1 | 527 | 0.0 | 612 |
| MS.gene71606.t1 | AT5G49990 | 58.240 | 534 | 213 | 3 | 1 | 531 | 1 | 527 | 0.0 | 612 |
| MS.gene71606.t1 | AT5G49990 | 58.240 | 534 | 213 | 3 | 1 | 531 | 1 | 527 | 0.0 | 612 |
| MS.gene71606.t1 | AT1G65550 | 53.308 | 529 | 235 | 4 | 13 | 531 | 14 | 540 | 0.0 | 596 |
| MS.gene71606.t1 | AT2G34190 | 55.706 | 517 | 222 | 4 | 20 | 532 | 11 | 524 | 0.0 | 587 |
| MS.gene71606.t1 | AT5G62890 | 61.758 | 455 | 171 | 3 | 7 | 458 | 4 | 458 | 0.0 | 566 |
| MS.gene71606.t1 | AT2G05760 | 53.204 | 515 | 235 | 3 | 20 | 530 | 6 | 518 | 0.0 | 555 |
| MS.gene71606.t1 | AT2G26510 | 50.973 | 514 | 248 | 3 | 21 | 531 | 36 | 548 | 2.72e-179 | 516 |
| MS.gene71606.t1 | AT1G10540 | 57.867 | 375 | 152 | 3 | 13 | 381 | 14 | 388 | 1.13e-152 | 442 |
| MS.gene71606.t1 | AT5G25420 | 45.898 | 451 | 177 | 4 | 13 | 462 | 26 | 410 | 3.69e-135 | 399 |
| MS.gene71606.t1 | AT2G26510 | 53.022 | 364 | 168 | 2 | 21 | 381 | 36 | 399 | 1.03e-126 | 377 |
| MS.gene71606.t1 | AT2G26510 | 52.422 | 351 | 164 | 2 | 21 | 368 | 36 | 386 | 1.37e-119 | 359 |
| MS.gene71606.t1 | AT4G38050 | 33.210 | 539 | 306 | 7 | 32 | 529 | 179 | 704 | 1.56e-87 | 285 |
| MS.gene71606.t1 | AT2G27810 | 33.516 | 546 | 318 | 8 | 22 | 529 | 163 | 701 | 5.07e-87 | 283 |
| MS.gene71606.t1 | AT2G27810 | 32.632 | 570 | 315 | 10 | 22 | 529 | 163 | 725 | 1.60e-82 | 272 |
| MS.gene71606.t1 | AT2G27810 | 35.349 | 430 | 253 | 6 | 22 | 429 | 163 | 589 | 4.01e-72 | 241 |
| MS.gene71606.t1 | AT2G27810 | 35.770 | 383 | 221 | 6 | 22 | 382 | 163 | 542 | 2.86e-62 | 213 |
Find 128 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTATTCTTGTTCCTTTGA+TGG | 0.198717 | 1.4:-82096963 | MS.gene71606:CDS |
| TCTTCCTGCATTGGTTATTC+TGG | 0.207207 | 1.4:-82096083 | MS.gene71606:CDS |
| GTTTATAAATCAGGTAAATT+TGG | 0.217881 | 1.4:-82094110 | MS.gene71606:intron |
| CAATACACGGCTGCTATTAT+TGG | 0.243252 | 1.4:+82094062 | None:intergenic |
| AATTATAGTTGCTTACTTCT+TGG | 0.265429 | 1.4:-82093482 | MS.gene71606:CDS |
| GCCTTGTTTGGCGCAGCAAC+TGG | 0.284735 | 1.4:-82094641 | MS.gene71606:CDS |
| CTCGAATATCTCACACTATC+TGG | 0.311355 | 1.4:-82093670 | MS.gene71606:CDS |
| GGTGAAAGTGGTGGTGGTGG+TGG | 0.333045 | 1.4:-82097241 | MS.gene71606:CDS |
| ACTCTTCTGGATGCCTTGTT+TGG | 0.338596 | 1.4:-82094653 | MS.gene71606:CDS |
| ACTAGGCTTCCAGTGGTTAT+AGG | 0.341886 | 1.4:-82096761 | MS.gene71606:CDS |
| TTAGGGTATAGGCACTCTTC+TGG | 0.345374 | 1.4:-82094666 | MS.gene71606:intron |
| GTTCCCCTTGTAACTCTAAC+TGG | 0.347094 | 1.4:-82096277 | MS.gene71606:CDS |
| GACAGACCTGACGAGGATTA+AGG | 0.355818 | 1.4:+82096675 | None:intergenic |
| AATCTCTTGTAACAGTCAAC+TGG | 0.358889 | 1.4:-82094850 | MS.gene71606:intron |
| TACTTAGCCGCGGTGTTGGC+TGG | 0.363924 | 1.4:-82094774 | MS.gene71606:CDS |
| GGACATGGCCCTGCTCATAC+TGG | 0.367899 | 1.4:-82093649 | MS.gene71606:CDS |
| TTCATCGCTGCATCAAGATT+TGG | 0.370746 | 1.4:-82094823 | MS.gene71606:CDS |
| TTACTGTTGATTGCTGTGTT+AGG | 0.377345 | 1.4:-82097174 | MS.gene71606:CDS |
| GGCCTAGGACTCTTTGTGAT+AGG | 0.379791 | 1.4:-82096256 | MS.gene71606:CDS |
| TGAGCAGCTTCAGCTGGACT+TGG | 0.390320 | 1.4:-82093784 | MS.gene71606:intron |
| CAACATTACATTGTTATGCT+TGG | 0.391706 | 1.4:-82097004 | MS.gene71606:CDS |
| AGTTGCCGTACTGACCGATC+TGG | 0.396352 | 1.4:-82095550 | MS.gene71606:CDS |
| ACTATTCTTGTTCCTTTGAT+GGG | 0.400549 | 1.4:-82096962 | MS.gene71606:CDS |
| GTGTTAGGAGCTCACCTTCA+TGG | 0.405039 | 1.4:-82097159 | MS.gene71606:CDS |
| GCTGGTGAAAGTGGTGGTGG+TGG | 0.405192 | 1.4:-82097244 | MS.gene71606:CDS |
| AGTTTGATGATTTAGGGTAT+AGG | 0.429815 | 1.4:-82094677 | MS.gene71606:intron |
| GCCTAGGACTCTTTGTGATA+GGG | 0.430014 | 1.4:-82096255 | MS.gene71606:CDS |
| AGTCAAAATGCAGGATTGTT+GGG | 0.433330 | 1.4:-82094457 | MS.gene71606:CDS |
| GAGTTCCGTATCCATTTCAA+TGG | 0.438140 | 1.4:-82095243 | MS.gene71606:CDS |
| ATCAGAAGTGATGAGTTCTA+TGG | 0.440514 | 1.4:-82093373 | MS.gene71606:CDS |
| CTGTGATGAGCAGCTTCAGC+TGG | 0.443945 | 1.4:-82093790 | MS.gene71606:intron |
| ACTTCTGATATCCTGATTGA+AGG | 0.449917 | 1.4:+82093387 | None:intergenic |
| AAAATTCAGGACCTTCAATC+AGG | 0.451074 | 1.4:-82093398 | MS.gene71606:CDS |
| TAGTCAAAATGCAGGATTGT+TGG | 0.453962 | 1.4:-82094458 | MS.gene71606:CDS |
| TGTTGGGTCTAACACGCGTT+GGG | 0.454667 | 1.4:-82094441 | MS.gene71606:CDS |
| TGCAGACATGGCTTGGAACT+AGG | 0.457743 | 1.4:-82096778 | MS.gene71606:CDS |
| TTGGCAGATTGTGTTGAGAT+TGG | 0.458776 | 1.4:-82096106 | MS.gene71606:CDS |
| CATCAAAGGAACAAGAATAG+TGG | 0.469158 | 1.4:+82096964 | None:intergenic |
| TCTGTACTTAGCCGCGGTGT+TGG | 0.469403 | 1.4:-82094778 | MS.gene71606:CDS |
| TAGCCGCGGTGTTGGCTGGC+TGG | 0.472588 | 1.4:-82094770 | MS.gene71606:intron |
| TGTGTTCTCTTTGCATATGT+CGG | 0.473198 | 1.4:-82094041 | MS.gene71606:intron |
| AGTTCCGTATCCATTTCAAT+GGG | 0.475091 | 1.4:-82095242 | MS.gene71606:CDS |
| ACAGTAAGTTGTTCCTTGAC+AGG | 0.477631 | 1.4:+82097190 | None:intergenic |
| ACTCTGTTGCAGACATGGCT+TGG | 0.479227 | 1.4:-82096785 | MS.gene71606:CDS |
| TGTATTCCTTAATCCTCGTC+AGG | 0.479851 | 1.4:-82096681 | MS.gene71606:intron |
| TGAGATTGGTCTTCCTGCAT+TGG | 0.479893 | 1.4:-82096092 | MS.gene71606:CDS |
| CTAGGCCAGTTAGAGTTACA+AGG | 0.480139 | 1.4:+82096272 | None:intergenic |
| CTTGTTCCTTTGATGGGTGG+TGG | 0.483527 | 1.4:-82096956 | MS.gene71606:CDS |
| AGTTGTTCCTTGACAGGATG+AGG | 0.494608 | 1.4:+82097196 | None:intergenic |
| ATATCACCAACATTGAAAGT+AGG | 0.500875 | 1.4:+82095214 | None:intergenic |
| TGCCCCTTGAATAGCTCTCA+TGG | 0.504533 | 1.4:+82096513 | None:intergenic |
| TTCTCTTGTTGCAATTGTAG+AGG | 0.505227 | 1.4:-82095173 | MS.gene71606:intron |
| GAGAATGCCACAGAAATAGC+TGG | 0.506607 | 1.4:+82096716 | None:intergenic |
| GGTTAATTACTGCCGCTCCA+TGG | 0.508265 | 1.4:-82095528 | MS.gene71606:intron |
| TATCACCAACATTGAAAGTA+GGG | 0.515321 | 1.4:+82095215 | None:intergenic |
| CTTGTAACTCTAACTGGCCT+AGG | 0.515850 | 1.4:-82096271 | MS.gene71606:CDS |
| TCAACACTCTGTTGCAGACA+TGG | 0.520169 | 1.4:-82096790 | MS.gene71606:CDS |
| TCTTTGTGATAGGGTTTCCA+AGG | 0.520833 | 1.4:-82096246 | MS.gene71606:CDS |
| AGAGTCATTCAAATATCAGC+TGG | 0.521155 | 1.4:-82094412 | MS.gene71606:CDS |
| ATGACCAGAATAACCAATGC+AGG | 0.528438 | 1.4:+82096079 | None:intergenic |
| TTTGCAGTCATAGTCACGAT+TGG | 0.530572 | 1.4:-82095646 | MS.gene71606:CDS |
| TACAGATCAATGTTCATCGT+TGG | 0.532814 | 1.4:-82093733 | MS.gene71606:CDS |
| GAGGTGGATCCAGTATGAGC+AGG | 0.532820 | 1.4:+82093640 | None:intergenic |
| TATTCTGGTCATCCTCTCCC+AGG | 0.534906 | 1.4:-82096068 | MS.gene71606:intron |
| ACCCTATCACAAAGAGTCCT+AGG | 0.536299 | 1.4:+82096254 | None:intergenic |
| GTTGCCGTACTGACCGATCT+GGG | 0.544476 | 1.4:-82095549 | MS.gene71606:CDS |
| GGGAGCCCTACTTTCAATGT+TGG | 0.546761 | 1.4:-82095220 | MS.gene71606:CDS |
| CAATCCATGAGAGCTATTCA+AGG | 0.546761 | 1.4:-82096517 | MS.gene71606:CDS |
| TCCAGTTGCTGCGCCAAACA+AGG | 0.547910 | 1.4:+82094640 | None:intergenic |
| AAAGATGCTCCTATAACCAC+TGG | 0.549867 | 1.4:+82096752 | None:intergenic |
| AATGAGTGCATTTAGGCTGA+AGG | 0.552105 | 1.4:+82093322 | None:intergenic |
| TAGTCACGATTGGAATTGCA+TGG | 0.554844 | 1.4:-82095636 | MS.gene71606:CDS |
| TCTTATTCCAGCTATTTCTG+TGG | 0.555907 | 1.4:-82096723 | MS.gene71606:CDS |
| CCCACTGTCACGGTGAGTTG+AGG | 0.557039 | 1.4:+82093435 | None:intergenic |
| ATTCTTGTTCCTTTGATGGG+TGG | 0.557666 | 1.4:-82096959 | MS.gene71606:CDS |
| GCAGCTGGTGAAAGTGGTGG+TGG | 0.562807 | 1.4:-82097247 | MS.gene71606:CDS |
| ATCGCTGCATCAAGATTTGG+CGG | 0.564712 | 1.4:-82094820 | MS.gene71606:CDS |
| TCGTGACTATGACTGCAAAT+CGG | 0.567669 | 1.4:+82095650 | None:intergenic |
| CAGATAGTGTGAGATATTCG+AGG | 0.569216 | 1.4:+82093671 | None:intergenic |
| GAAAGAGAAACAATGGCAGC+TGG | 0.572288 | 1.4:-82097262 | None:intergenic |
| CCACAAAAGATTAAATCAAG+AGG | 0.575339 | 1.4:-82095679 | MS.gene71606:CDS |
| ACCAGTGTCTCCCACTGTCA+CGG | 0.575457 | 1.4:+82093425 | None:intergenic |
| CGGCAGTAATTAACCCAGAT+CGG | 0.576534 | 1.4:+82095536 | None:intergenic |
| ATGAGTGCATTTAGGCTGAA+GGG | 0.578950 | 1.4:+82093323 | None:intergenic |
| AATCCATGAGAGCTATTCAA+GGG | 0.583596 | 1.4:-82096516 | MS.gene71606:CDS |
| AGTCACGATTGGAATTGCAT+GGG | 0.588659 | 1.4:-82095635 | MS.gene71606:CDS |
| ATGGGTTACTTACGCCATGA+AGG | 0.588819 | 1.4:+82097145 | None:intergenic |
| TAAAGTAACATACCTGGGAG+AGG | 0.589098 | 1.4:+82096056 | None:intergenic |
| ACCGTGACAGTGGGAGACAC+TGG | 0.589213 | 1.4:-82093426 | MS.gene71606:CDS |
| TTATTGCATTTGCAGCTGAA+GGG | 0.589241 | 1.4:-82097042 | MS.gene71606:intron |
| GCCTCAACTCACCGTGACAG+TGG | 0.591700 | 1.4:-82093436 | MS.gene71606:CDS |
| ACGGCTGCTATTATTGGCAA+TGG | 0.594763 | 1.4:+82094068 | None:intergenic |
| CTTTGTGATAGGGTTTCCAA+GGG | 0.595097 | 1.4:-82096245 | MS.gene71606:intron |
| TTAACCCAGATCGGTCAGTA+CGG | 0.603808 | 1.4:+82095545 | None:intergenic |
| CCTCAACTCACCGTGACAGT+GGG | 0.606252 | 1.4:-82093435 | MS.gene71606:CDS |
| CAAAATGTACACTGATGCGG+TGG | 0.607400 | 1.4:+82094616 | None:intergenic |
| AGGTGGATCCAGTATGAGCA+GGG | 0.613316 | 1.4:+82093641 | None:intergenic |
| TGCTCATACTGGATCCACCT+CGG | 0.614287 | 1.4:-82093638 | MS.gene71606:intron |
| ACAATGGCAGCTGGTGAAAG+TGG | 0.615031 | 1.4:-82097253 | MS.gene71606:CDS |
| TTCCGTATCCATTTCAATGG+GGG | 0.618485 | 1.4:-82095240 | MS.gene71606:CDS |
| ACATTGCCACCACCCATCAA+AGG | 0.619800 | 1.4:+82096950 | None:intergenic |
| ATCTCTTGTAACAGTCAACT+GGG | 0.625026 | 1.4:-82094849 | MS.gene71606:intron |
| AATAGTGGAAACAATGACAA+TGG | 0.627526 | 1.4:+82096979 | None:intergenic |
| TTGTTGGGTCTAACACGCGT+TGG | 0.628068 | 1.4:-82094442 | MS.gene71606:CDS |
| GTCACGATTGGAATTGCATG+GGG | 0.628860 | 1.4:-82095634 | MS.gene71606:CDS |
| GTGACAGTGGGAGACACTGG+TGG | 0.631148 | 1.4:-82093423 | MS.gene71606:CDS |
| ACACCGCGGCTAAGTACAGA+AGG | 0.633774 | 1.4:+82094781 | None:intergenic |
| AGATATTCGAGGAAATATTG+TGG | 0.636493 | 1.4:+82093682 | None:intergenic |
| GCTTGGAACTAGGCTTCCAG+TGG | 0.642697 | 1.4:-82096768 | MS.gene71606:CDS |
| CCACCTTCTGTACTTAGCCG+CGG | 0.651344 | 1.4:-82094784 | MS.gene71606:CDS |
| AAGATATATATGTACCGAGG+TGG | 0.652379 | 1.4:+82093624 | None:intergenic |
| CAAGGGGAACAGCACTGAGA+GGG | 0.652878 | 1.4:+82096290 | None:intergenic |
| TGCAAAGAGAACACAATACA+CGG | 0.654533 | 1.4:+82094049 | None:intergenic |
| TATCTCACACTATCTGGACA+TGG | 0.661111 | 1.4:-82093664 | MS.gene71606:CDS |
| TAGGCCAGTTAGAGTTACAA+GGG | 0.662208 | 1.4:+82096273 | None:intergenic |
| GGCGTGTTCACGACTCATAG+TGG | 0.664546 | 1.4:+82093456 | None:intergenic |
| TTACACAGACAGACCTGACG+AGG | 0.671529 | 1.4:+82096668 | None:intergenic |
| TACCAAGACTGACCATGGAG+CGG | 0.672864 | 1.4:+82095516 | None:intergenic |
| ATCCATGAGAGCTATTCAAG+GGG | 0.676734 | 1.4:-82096515 | MS.gene71606:CDS |
| TGACAGTGGGAGACACTGGT+GGG | 0.683936 | 1.4:-82093422 | MS.gene71606:CDS |
| ACAAGGGGAACAGCACTGAG+AGG | 0.687831 | 1.4:+82096289 | None:intergenic |
| CAACAAAATGTACACTGATG+CGG | 0.695683 | 1.4:+82094613 | None:intergenic |
| CCGCGGCTAAGTACAGAAGG+TGG | 0.698072 | 1.4:+82094784 | None:intergenic |
| ATGGCAGCTGGTGAAAGTGG+TGG | 0.716876 | 1.4:-82097250 | MS.gene71606:CDS |
| AGGCCAGTTAGAGTTACAAG+GGG | 0.717548 | 1.4:+82096274 | None:intergenic |
| GTTCCGTATCCATTTCAATG+GGG | 0.719924 | 1.4:-82095241 | MS.gene71606:CDS |
| CAACTGAATTGAGTACTCAG+TGG | 0.730095 | 1.4:+82095568 | None:intergenic |
| GTACCAGCCAGCCAACACCG+CGG | 0.843946 | 1.4:+82094767 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTAAATAAATGATCATT+AGG | + | chr1.4:82094424-82094443 | None:intergenic | 15.0% |
| !!! | TTAATTTTGTTATGTTTTGA+GGG | - | chr1.4:82093714-82093733 | MS.gene71606:CDS | 15.0% |
| !!! | TTTAATTTTGTTATGTTTTG+AGG | - | chr1.4:82093713-82093732 | MS.gene71606:CDS | 15.0% |
| !!! | TTTAATTTTTAGTTTCCATT+TGG | - | chr1.4:82095677-82095696 | MS.gene71606:CDS | 15.0% |
| !! | AAAACCAAATTACAACAAAA+TGG | + | chr1.4:82093460-82093479 | None:intergenic | 20.0% |
| !! | AAACCAAATTACAACAAAAT+GGG | + | chr1.4:82093459-82093478 | None:intergenic | 20.0% |
| !! | AATATCAAAGTATAACCAAA+TGG | + | chr1.4:82095695-82095714 | None:intergenic | 20.0% |
| !! | ACTTTATGAGAAACAAAAAA+TGG | + | chr1.4:82093493-82093512 | None:intergenic | 20.0% |
| !! | AGTAAAAAACAAATTATCCA+AGG | + | chr1.4:82096065-82096084 | None:intergenic | 20.0% |
| !! | ATCAAAATAAGAATCAAAGA+TGG | + | chr1.4:82097017-82097036 | None:intergenic | 20.0% |
| !! | ATTAAAGTAAGAGATTTGAA+TGG | - | chr1.4:82094765-82094784 | MS.gene71606:intron | 20.0% |
| !! | ATTGTATTTATTCATATTGC+AGG | - | chr1.4:82094262-82094281 | MS.gene71606:intron | 20.0% |
| !! | CTTTATGAGAAACAAAAAAT+GGG | + | chr1.4:82093492-82093511 | None:intergenic | 20.0% |
| !! | GTTTACAACTAAATGTTATT+GGG | - | chr1.4:82095213-82095232 | MS.gene71606:CDS | 20.0% |
| !! | GTTTATAAATCAGGTAAATT+TGG | - | chr1.4:82096473-82096492 | MS.gene71606:CDS | 20.0% |
| !! | TGTTTACAACTAAATGTTAT+TGG | - | chr1.4:82095212-82095231 | MS.gene71606:CDS | 20.0% |
| !!! | AACTTTTTCTTCATTTTGTT+TGG | - | chr1.4:82093675-82093694 | MS.gene71606:CDS | 20.0% |
| !!! | ATTTAACAAACATACTCTTT+TGG | - | chr1.4:82094435-82094454 | MS.gene71606:CDS | 20.0% |
| !!! | GAAAGAATTTGACATTTTAA+AGG | + | chr1.4:82096751-82096770 | None:intergenic | 20.0% |
| !!! | GAAATCACTTATTTGTTTTT+TGG | + | chr1.4:82096666-82096685 | None:intergenic | 20.0% |
| !!! | TAATTTTATCATCCTTATGT+TGG | - | chr1.4:82096607-82096626 | MS.gene71606:intron | 20.0% |
| ! | AAAAATCTGTTCAGATTCAT+AGG | + | chr1.4:82097240-82097259 | None:intergenic | 25.0% |
| ! | AATAGCCAGATTACAATATT+CGG | + | chr1.4:82095638-82095657 | None:intergenic | 25.0% |
| ! | AATTATAGTTGCTTACTTCT+TGG | - | chr1.4:82097101-82097120 | MS.gene71606:intron | 25.0% |
| ! | ATATCACTGAGTAAATTACA+AGG | + | chr1.4:82094674-82094693 | None:intergenic | 25.0% |
| ! | ATTTACCTGATTTATAAACC+CGG | + | chr1.4:82096472-82096491 | None:intergenic | 25.0% |
| ! | CTTTACATAGATTGTTTACT+TGG | - | chr1.4:82093967-82093986 | MS.gene71606:intron | 25.0% |
| ! | GTAAATAAAGTAACATACCT+GGG | + | chr1.4:82094535-82094554 | None:intergenic | 25.0% |
| ! | TATATCCGAATATTGTAATC+TGG | - | chr1.4:82095630-82095649 | MS.gene71606:CDS | 25.0% |
| ! | TGCTACACAAATATTTCAAA+AGG | + | chr1.4:82094590-82094609 | None:intergenic | 25.0% |
| !! | AAACAATTTGTTCATTCCTA+TGG | - | chr1.4:82096309-82096328 | MS.gene71606:intron | 25.0% |
| !! | AAATATAGACTAACTTGTGT+GGG | - | chr1.4:82095460-82095479 | MS.gene71606:intron | 25.0% |
| !! | ATAGTGTCTTTTAATGCATT+TGG | - | chr1.4:82094181-82094200 | MS.gene71606:intron | 25.0% |
| !! | ATGAATAGTTTTCATTAGCT+TGG | - | chr1.4:82093992-82094011 | MS.gene71606:intron | 25.0% |
| !! | ATGCTTTTCTTCTCTATATT+TGG | - | chr1.4:82096198-82096217 | MS.gene71606:intron | 25.0% |
| !! | TAAATATAGACTAACTTGTG+TGG | - | chr1.4:82095459-82095478 | MS.gene71606:intron | 25.0% |
| !! | TGTTGAAGTTTGATGATTTA+GGG | - | chr1.4:82095900-82095919 | MS.gene71606:intron | 25.0% |
| !!! | TAACCCATTTTGTTGTAATT+TGG | - | chr1.4:82093453-82093472 | MS.gene71606:CDS | 25.0% |
| !!! | TCTCATAAAGTTTTAAGCTT+TGG | - | chr1.4:82093502-82093521 | MS.gene71606:CDS | 25.0% |
| AAAGATGTTGAATGAGATAG+AGG | + | chr1.4:82094559-82094578 | None:intergenic | 30.0% | |
| AAAGTAAGAGATTTGAATGG+TGG | - | chr1.4:82094768-82094787 | MS.gene71606:intron | 30.0% | |
| AAGATGTTGAATGAGATAGA+GGG | + | chr1.4:82094558-82094577 | None:intergenic | 30.0% | |
| AATACTCAGAAATTCACAGA+AGG | + | chr1.4:82096239-82096258 | None:intergenic | 30.0% | |
| ACTATTCTTGTTCCTTTGAT+GGG | - | chr1.4:82093621-82093640 | MS.gene71606:intron | 30.0% | |
| ACTGTTACAAGAGATTGAAA+AGG | + | chr1.4:82095729-82095748 | None:intergenic | 30.0% | |
| AGATATTCGAGGAAATATTG+TGG | + | chr1.4:82096904-82096923 | None:intergenic | 30.0% | |
| ATACTCAGAAATTCACAGAA+GGG | + | chr1.4:82096238-82096257 | None:intergenic | 30.0% | |
| ATATCACCAACATTGAAAGT+AGG | + | chr1.4:82095372-82095391 | None:intergenic | 30.0% | |
| ATGGTTATACTTATAGCAAG+AGG | + | chr1.4:82096998-82097017 | None:intergenic | 30.0% | |
| CAACATTACATTGTTATGCT+TGG | - | chr1.4:82093579-82093598 | MS.gene71606:intron | 30.0% | |
| CATGATCAATATGACATTGT+GGG | - | chr1.4:82095550-82095569 | MS.gene71606:CDS | 30.0% | |
| CCACAAAAGATTAAATCAAG+AGG | - | chr1.4:82094904-82094923 | MS.gene71606:intron | 30.0% | |
| CCTAAGAACTATTTGACAAT+AGG | + | chr1.4:82096010-82096029 | None:intergenic | 30.0% | |
| CCTATTGTCAAATAGTTCTT+AGG | - | chr1.4:82096007-82096026 | MS.gene71606:intron | 30.0% | |
| CTGTTACAAGAGATTGAAAA+GGG | + | chr1.4:82095728-82095747 | None:intergenic | 30.0% | |
| GACGTAATAGATGATATCTT+AGG | - | chr1.4:82095156-82095175 | MS.gene71606:intron | 30.0% | |
| GGTAAATAAAGTAACATACC+TGG | + | chr1.4:82094536-82094555 | None:intergenic | 30.0% | |
| GTAAATTACAAGGTAAGAGT+TGG | + | chr1.4:82094664-82094683 | None:intergenic | 30.0% | |
| GTAGAGAAAGCTAATTCAAA+TGG | + | chr1.4:82095284-82095303 | None:intergenic | 30.0% | |
| TAAATGTGAGAACAATGTTG+TGG | + | chr1.4:82096386-82096405 | None:intergenic | 30.0% | |
| TAGTTCTTAGGCTATATTCT+TGG | - | chr1.4:82096019-82096038 | MS.gene71606:intron | 30.0% | |
| TATCACCAACATTGAAAGTA+GGG | + | chr1.4:82095371-82095390 | None:intergenic | 30.0% | |
| TTATTAAGTGTCTTTGACCT+TGG | - | chr1.4:82096045-82096064 | MS.gene71606:intron | 30.0% | |
| ! | AATAGTGGAAACAATGACAA+TGG | + | chr1.4:82093607-82093626 | None:intergenic | 30.0% |
| ! | AATATAGACTAACTTGTGTG+GGG | - | chr1.4:82095461-82095480 | MS.gene71606:intron | 30.0% |
| ! | AGTTTGATGATTTAGGGTAT+AGG | - | chr1.4:82095906-82095925 | MS.gene71606:intron | 30.0% |
| ! | CCTCTTGATTTAATCTTTTG+TGG | + | chr1.4:82094907-82094926 | None:intergenic | 30.0% |
| ! | CTTATTGCTTCTTTTGTTCA+AGG | - | chr1.4:82094096-82094115 | MS.gene71606:CDS | 30.0% |
| ! | GTGTTGAAGTTTGATGATTT+AGG | - | chr1.4:82095899-82095918 | MS.gene71606:intron | 30.0% |
| ! | TCTAAGATATATATGTACCG+AGG | + | chr1.4:82096965-82096984 | None:intergenic | 30.0% |
| ! | TCTTTTGTTCAAGGAATGAT+TGG | - | chr1.4:82094105-82094124 | MS.gene71606:intron | 30.0% |
| ! | TTTCCTTTTAGTCAAAATGC+AGG | - | chr1.4:82096117-82096136 | MS.gene71606:intron | 30.0% |
| !! | ACATTGGTTTAACCAAAAAG+TGG | + | chr1.4:82094870-82094889 | None:intergenic | 30.0% |
| !! | GTGTTAATTTGTTGTGTTCT+TGG | - | chr1.4:82094021-82094040 | MS.gene71606:intron | 30.0% |
| !! | TTCTTGGTTTCATTTTTCAG+AGG | - | chr1.4:82094037-82094056 | MS.gene71606:intron | 30.0% |
| !! | TTGATGTTCTTTCCACTTTT+TGG | - | chr1.4:82094855-82094874 | MS.gene71606:intron | 30.0% |
| !!! | AATCCTGCATTTTGACTAAA+AGG | + | chr1.4:82096123-82096142 | None:intergenic | 30.0% |
| !!! | ATTGGATTTTTTGGATTCTG+GGG | - | chr1.4:82094123-82094142 | MS.gene71606:intron | 30.0% |
| !!! | ATTTGCTGAAATTTTGACTG+CGG | - | chr1.4:82094972-82094991 | MS.gene71606:intron | 30.0% |
| !!! | CAAGGAATGATTGGATTTTT+TGG | - | chr1.4:82094114-82094133 | MS.gene71606:intron | 30.0% |
| !!! | GATGAAATCAGTTCTAGTTT+TGG | - | chr1.4:82094211-82094230 | MS.gene71606:intron | 30.0% |
| !!! | GATTGGATTTTTTGGATTCT+GGG | - | chr1.4:82094122-82094141 | MS.gene71606:intron | 30.0% |
| !!! | TGATTGGATTTTTTGGATTC+TGG | - | chr1.4:82094121-82094140 | MS.gene71606:intron | 30.0% |
| AAAATTCAGGACCTTCAATC+AGG | - | chr1.4:82097185-82097204 | MS.gene71606:CDS | 35.0% | |
| AAGATATATATGTACCGAGG+TGG | + | chr1.4:82096962-82096981 | None:intergenic | 35.0% | |
| AATCCATGAGAGCTATTCAA+GGG | - | chr1.4:82094067-82094086 | MS.gene71606:CDS | 35.0% | |
| AATCTCTTGTAACAGTCAAC+TGG | - | chr1.4:82095733-82095752 | MS.gene71606:intron | 35.0% | |
| AATGTACAACTACAACAGCA+TGG | + | chr1.4:82093941-82093960 | None:intergenic | 35.0% | |
| ACTTCTGATATCCTGATTGA+AGG | + | chr1.4:82097199-82097218 | None:intergenic | 35.0% | |
| AGAGTCATTCAAATATCAGC+TGG | - | chr1.4:82096171-82096190 | MS.gene71606:intron | 35.0% | |
| AGATGTTGAATGAGATAGAG+GGG | + | chr1.4:82094557-82094576 | None:intergenic | 35.0% | |
| AGTCAAAATGCAGGATTGTT+GGG | - | chr1.4:82096126-82096145 | MS.gene71606:intron | 35.0% | |
| AGTTCCGTATCCATTTCAAT+GGG | - | chr1.4:82095341-82095360 | MS.gene71606:intron | 35.0% | |
| ATCAGAAGTGATGAGTTCTA+TGG | - | chr1.4:82097210-82097229 | MS.gene71606:CDS | 35.0% | |
| ATCTCTTGTAACAGTCAACT+GGG | - | chr1.4:82095734-82095753 | MS.gene71606:intron | 35.0% | |
| CAACAAAATGTACACTGATG+CGG | + | chr1.4:82095973-82095992 | None:intergenic | 35.0% | |
| CACTATTCTTGTTCCTTTGA+TGG | - | chr1.4:82093620-82093639 | MS.gene71606:intron | 35.0% | |
| CATCAAAGGAACAAGAATAG+TGG | + | chr1.4:82093622-82093641 | None:intergenic | 35.0% | |
| CCACAATGTCATATTGATCA+TGG | + | chr1.4:82095552-82095571 | None:intergenic | 35.0% | |
| CCATGATCAATATGACATTG+TGG | - | chr1.4:82095549-82095568 | MS.gene71606:CDS | 35.0% | |
| CCTAATTACTTACTGTATCC+GGG | - | chr1.4:82096451-82096470 | MS.gene71606:CDS | 35.0% | |
| GCCTAATTACTTACTGTATC+CGG | - | chr1.4:82096450-82096469 | MS.gene71606:CDS | 35.0% | |
| TACAGATCAATGTTCATCGT+TGG | - | chr1.4:82096850-82096869 | MS.gene71606:intron | 35.0% | |
| TAGTCAAAATGCAGGATTGT+TGG | - | chr1.4:82096125-82096144 | MS.gene71606:intron | 35.0% | |
| TGCAAAGAGAACACAATACA+CGG | + | chr1.4:82096537-82096556 | None:intergenic | 35.0% | |
| TGTATCCGGGTTTATAAATC+AGG | - | chr1.4:82096464-82096483 | MS.gene71606:CDS | 35.0% | |
| TGTGTTCTCTTTGCATATGT+CGG | - | chr1.4:82096542-82096561 | MS.gene71606:intron | 35.0% | |
| TTATTGCATTTGCAGCTGAA+GGG | - | chr1.4:82093541-82093560 | MS.gene71606:intron | 35.0% | |
| TTCTCTTGTTGCAATTGTAG+AGG | - | chr1.4:82095410-82095429 | MS.gene71606:intron | 35.0% | |
| TTTACTGTGATTCCTGTAGT+TGG | - | chr1.4:82094458-82094477 | MS.gene71606:CDS | 35.0% | |
| TTTATTGCATTTGCAGCTGA+AGG | - | chr1.4:82093540-82093559 | MS.gene71606:intron | 35.0% | |
| ! | TTACTGTTGATTGCTGTGTT+AGG | - | chr1.4:82093409-82093428 | MS.gene71606:CDS | 35.0% |
| !! | GATTCTGGGGAATTTTTGTA+AGG | - | chr1.4:82094136-82094155 | MS.gene71606:intron | 35.0% |
| !! | TCTGGCTATTTCTAAGTAGA+AGG | - | chr1.4:82095648-82095667 | MS.gene71606:CDS | 35.0% |
| !! | TCTTATTCCAGCTATTTCTG+TGG | - | chr1.4:82093860-82093879 | MS.gene71606:intron | 35.0% |
| !!! | ATGTTTTGAGGGAAAACTGT+AGG | - | chr1.4:82093725-82093744 | MS.gene71606:CDS | 35.0% |
| AAAGATGCTCCTATAACCAC+TGG | + | chr1.4:82093834-82093853 | None:intergenic | 40.0% | |
| ACAGTAAGTTGTTCCTTGAC+AGG | + | chr1.4:82093396-82093415 | None:intergenic | 40.0% | |
| AGATATTCCAACGAAGCCAT+AGG | + | chr1.4:82096328-82096347 | None:intergenic | 40.0% | |
| AGCTTTCTGTACATCTATGC+AGG | - | chr1.4:82095313-82095332 | MS.gene71606:intron | 40.0% | |
| AGTCACGATTGGAATTGCAT+GGG | - | chr1.4:82094948-82094967 | MS.gene71606:intron | 40.0% | |
| ATCCATGAGAGCTATTCAAG+GGG | - | chr1.4:82094068-82094087 | MS.gene71606:CDS | 40.0% | |
| ATGACCAGAATAACCAATGC+AGG | + | chr1.4:82094507-82094526 | None:intergenic | 40.0% | |
| ATTCTTGTTCCTTTGATGGG+TGG | - | chr1.4:82093624-82093643 | MS.gene71606:intron | 40.0% | |
| CAACTGAATTGAGTACTCAG+TGG | + | chr1.4:82095018-82095037 | None:intergenic | 40.0% | |
| CAATACACGGCTGCTATTAT+TGG | + | chr1.4:82096524-82096543 | None:intergenic | 40.0% | |
| CAATCCATGAGAGCTATTCA+AGG | - | chr1.4:82094066-82094085 | MS.gene71606:CDS | 40.0% | |
| CAGATAGTGTGAGATATTCG+AGG | + | chr1.4:82096915-82096934 | None:intergenic | 40.0% | |
| CCCGGATACAGTAAGTAATT+AGG | + | chr1.4:82096454-82096473 | None:intergenic | 40.0% | |
| CTCGAATATCTCACACTATC+TGG | - | chr1.4:82096913-82096932 | MS.gene71606:intron | 40.0% | |
| CTTTGTGATAGGGTTTCCAA+GGG | - | chr1.4:82094338-82094357 | MS.gene71606:intron | 40.0% | |
| GACAATAGGTAGTGAGAAGA+GGG | + | chr1.4:82095996-82096015 | None:intergenic | 40.0% | |
| GAGAGAAATGTGTTTACCCT+TGG | + | chr1.4:82094357-82094376 | None:intergenic | 40.0% | |
| GAGTTCCGTATCCATTTCAA+TGG | - | chr1.4:82095340-82095359 | MS.gene71606:intron | 40.0% | |
| GTTCCGTATCCATTTCAATG+GGG | - | chr1.4:82095342-82095361 | MS.gene71606:intron | 40.0% | |
| TAAAGTAACATACCTGGGAG+AGG | + | chr1.4:82094530-82094549 | None:intergenic | 40.0% | |
| TAGGCCAGTTAGAGTTACAA+GGG | + | chr1.4:82094313-82094332 | None:intergenic | 40.0% | |
| TAGTCACGATTGGAATTGCA+TGG | - | chr1.4:82094947-82094966 | MS.gene71606:intron | 40.0% | |
| TATCTCACACTATCTGGACA+TGG | - | chr1.4:82096919-82096938 | MS.gene71606:intron | 40.0% | |
| TCGTGACTATGACTGCAAAT+CGG | + | chr1.4:82094936-82094955 | None:intergenic | 40.0% | |
| TCTTTGTGATAGGGTTTCCA+AGG | - | chr1.4:82094337-82094356 | MS.gene71606:intron | 40.0% | |
| TGACAATAGGTAGTGAGAAG+AGG | + | chr1.4:82095997-82096016 | None:intergenic | 40.0% | |
| TGTATTCCTTAATCCTCGTC+AGG | - | chr1.4:82093902-82093921 | MS.gene71606:intron | 40.0% | |
| TTCATCGCTGCATCAAGATT+TGG | - | chr1.4:82095760-82095779 | MS.gene71606:intron | 40.0% | |
| TTCCGTATCCATTTCAATGG+GGG | - | chr1.4:82095343-82095362 | MS.gene71606:intron | 40.0% | |
| TTGGCAGATTGTGTTGAGAT+TGG | - | chr1.4:82094477-82094496 | MS.gene71606:intron | 40.0% | |
| TTTGCAGTCATAGTCACGAT+TGG | - | chr1.4:82094937-82094956 | MS.gene71606:intron | 40.0% | |
| ! | CAGCTGAAGGGATTTTTCTT+GGG | - | chr1.4:82093553-82093572 | MS.gene71606:intron | 40.0% |
| ! | TTTTCAACCTCATCCTGTCA+AGG | - | chr1.4:82093380-82093399 | MS.gene71606:CDS | 40.0% |
| !! | TCTTCCTGCATTGGTTATTC+TGG | - | chr1.4:82094500-82094519 | MS.gene71606:intron | 40.0% |
| !! | TTTTGAGGGAAAACTGTAGG+TGG | - | chr1.4:82093728-82093747 | MS.gene71606:CDS | 40.0% |
| !!! | GTTGGCTTTTCTCTCTTCAT+AGG | - | chr1.4:82096868-82096887 | MS.gene71606:intron | 40.0% |
| ACATGCCACAAAGAAGTCAG+AGG | + | chr1.4:82095259-82095278 | None:intergenic | 45.0% | |
| ACCCTATCACAAAGAGTCCT+AGG | + | chr1.4:82094332-82094351 | None:intergenic | 45.0% | |
| ACGGCTGCTATTATTGGCAA+TGG | + | chr1.4:82096518-82096537 | None:intergenic | 45.0% | |
| ACTAGGCTTCCAGTGGTTAT+AGG | - | chr1.4:82093822-82093841 | MS.gene71606:intron | 45.0% | |
| AGGCCAGTTAGAGTTACAAG+GGG | + | chr1.4:82094312-82094331 | None:intergenic | 45.0% | |
| AGTTCTCGCAGACCAACATA+AGG | + | chr1.4:82096622-82096641 | None:intergenic | 45.0% | |
| AGTTGTTCCTTGACAGGATG+AGG | + | chr1.4:82093390-82093409 | None:intergenic | 45.0% | |
| ATCGCTGCATCAAGATTTGG+CGG | - | chr1.4:82095763-82095782 | MS.gene71606:intron | 45.0% | |
| CAAAATGTACACTGATGCGG+TGG | + | chr1.4:82095970-82095989 | None:intergenic | 45.0% | |
| CAACACAATCTGCCAACTAC+AGG | + | chr1.4:82094473-82094492 | None:intergenic | 45.0% | |
| CGGCAGTAATTAACCCAGAT+CGG | + | chr1.4:82095050-82095069 | None:intergenic | 45.0% | |
| CTAGGCCAGTTAGAGTTACA+AGG | + | chr1.4:82094314-82094333 | None:intergenic | 45.0% | |
| CTCCCCCATTGAAATGGATA+CGG | + | chr1.4:82095348-82095367 | None:intergenic | 45.0% | |
| CTCTGCCTAGTTTGATGCTT+TGG | + | chr1.4:82095184-82095203 | None:intergenic | 45.0% | |
| GACACTGGTGGGAAAAATTC+AGG | - | chr1.4:82097172-82097191 | MS.gene71606:CDS | 45.0% | |
| GAGAATGCCACAGAAATAGC+TGG | + | chr1.4:82093870-82093889 | None:intergenic | 45.0% | |
| GCCTAGGACTCTTTGTGATA+GGG | - | chr1.4:82094328-82094347 | MS.gene71606:intron | 45.0% | |
| GGAATGTACTGCAACGACAT+TGG | + | chr1.4:82094886-82094905 | None:intergenic | 45.0% | |
| GTCACGATTGGAATTGCATG+GGG | - | chr1.4:82094949-82094968 | MS.gene71606:intron | 45.0% | |
| GTTCATTCCTATGGCTTCGT+TGG | - | chr1.4:82096318-82096337 | MS.gene71606:intron | 45.0% | |
| GTTCCCCTTGTAACTCTAAC+TGG | - | chr1.4:82094306-82094325 | MS.gene71606:intron | 45.0% | |
| TCAACACTCTGTTGCAGACA+TGG | - | chr1.4:82093793-82093812 | MS.gene71606:intron | 45.0% | |
| TTAACCCAGATCGGTCAGTA+CGG | + | chr1.4:82095041-82095060 | None:intergenic | 45.0% | |
| TTAGGGTATAGGCACTCTTC+TGG | - | chr1.4:82095917-82095936 | MS.gene71606:intron | 45.0% | |
| TTGCACCTCTGACTTCTTTG+TGG | - | chr1.4:82095251-82095270 | MS.gene71606:CDS | 45.0% | |
| ! | ACTCTTCTGGATGCCTTGTT+TGG | - | chr1.4:82095930-82095949 | MS.gene71606:intron | 45.0% |
| ! | AGACTAACTTGTGTGGGGAT+CGG | - | chr1.4:82095466-82095485 | MS.gene71606:intron | 45.0% |
| ! | AGGCTCCAAAGCATCAAACT+AGG | - | chr1.4:82095176-82095195 | MS.gene71606:CDS | 45.0% |
| ! | ATGGGTTACTTACGCCATGA+AGG | + | chr1.4:82093441-82093460 | None:intergenic | 45.0% |
| ! | CTTGTAACTCTAACTGGCCT+AGG | - | chr1.4:82094312-82094331 | MS.gene71606:intron | 45.0% |
| ! | GCAGCTGAAGGGATTTTTCT+TGG | - | chr1.4:82093552-82093571 | MS.gene71606:intron | 45.0% |
| !! | TGAGATTGGTCTTCCTGCAT+TGG | - | chr1.4:82094491-82094510 | MS.gene71606:intron | 45.0% |
| !!! | CAGACACTGCTTTTTGTTGC+TGG | - | chr1.4:82093768-82093787 | MS.gene71606:CDS | 45.0% |
| !!! | TCATTTTTTATATATTTTTA+TGG | - | chr1.4:82094375-82094394 | MS.gene71606:intron | 5.0% |
| ACATTGCCACCACCCATCAA+AGG | + | chr1.4:82093636-82093655 | None:intergenic | 50.0% | |
| ACTCTGTTGCAGACATGGCT+TGG | - | chr1.4:82093798-82093817 | MS.gene71606:intron | 50.0% | |
| AGGTGGATCCAGTATGAGCA+GGG | + | chr1.4:82096945-82096964 | None:intergenic | 50.0% | |
| CAAGCTACCAAGACTGACCA+TGG | + | chr1.4:82095075-82095094 | None:intergenic | 50.0% | |
| GACAGACCTGACGAGGATTA+AGG | + | chr1.4:82093911-82093930 | None:intergenic | 50.0% | |
| GGCCTAGGACTCTTTGTGAT+AGG | - | chr1.4:82094327-82094346 | MS.gene71606:intron | 50.0% | |
| GGGAGCCCTACTTTCAATGT+TGG | - | chr1.4:82095363-82095382 | MS.gene71606:intron | 50.0% | |
| GGTTAATTACTGCCGCTCCA+TGG | - | chr1.4:82095055-82095074 | MS.gene71606:intron | 50.0% | |
| GTGTTAGGAGCTCACCTTCA+TGG | - | chr1.4:82093424-82093443 | MS.gene71606:CDS | 50.0% | |
| TACCAAGACTGACCATGGAG+CGG | + | chr1.4:82095070-82095089 | None:intergenic | 50.0% | |
| TATTCTGGTCATCCTCTCCC+AGG | - | chr1.4:82094515-82094534 | MS.gene71606:intron | 50.0% | |
| TGCCCCTTGAATAGCTCTCA+TGG | + | chr1.4:82094073-82094092 | None:intergenic | 50.0% | |
| TGCTCATACTGGATCCACCT+CGG | - | chr1.4:82096945-82096964 | MS.gene71606:intron | 50.0% | |
| TGTTGGGTCTAACACGCGTT+GGG | - | chr1.4:82096142-82096161 | MS.gene71606:intron | 50.0% | |
| TTACACAGACAGACCTGACG+AGG | + | chr1.4:82093918-82093937 | None:intergenic | 50.0% | |
| TTGTTGGGTCTAACACGCGT+TGG | - | chr1.4:82096141-82096160 | MS.gene71606:intron | 50.0% | |
| ! | CATGGTCAGTCTTGGTAGCT+TGG | - | chr1.4:82095073-82095092 | MS.gene71606:intron | 50.0% |
| ! | CTTGTTCCTTTGATGGGTGG+TGG | - | chr1.4:82093627-82093646 | MS.gene71606:intron | 50.0% |
| ! | TGCAGACATGGCTTGGAACT+AGG | - | chr1.4:82093805-82093824 | MS.gene71606:intron | 50.0% |
| !!! | GCTGAAATTTTGACTGCGGC+TGG | - | chr1.4:82094976-82094995 | MS.gene71606:intron | 50.0% |
| ACACCGCGGCTAAGTACAGA+AGG | + | chr1.4:82095805-82095824 | None:intergenic | 55.0% | |
| ACCAGTGTCTCCCACTGTCA+CGG | + | chr1.4:82097161-82097180 | None:intergenic | 55.0% | |
| ATGGCAGCTGGTGAAAGTGG+TGG | - | chr1.4:82093333-82093352 | MS.gene71606:CDS | 55.0% | |
| CCACCTTCTGTACTTAGCCG+CGG | - | chr1.4:82095799-82095818 | MS.gene71606:intron | 55.0% | |
| CCTCAACTCACCGTGACAGT+GGG | - | chr1.4:82097148-82097167 | MS.gene71606:intron | 55.0% | |
| CTGTGATGAGCAGCTTCAGC+TGG | - | chr1.4:82096793-82096812 | MS.gene71606:CDS | 55.0% | |
| GAGGTGGATCCAGTATGAGC+AGG | + | chr1.4:82096946-82096965 | None:intergenic | 55.0% | |
| GCTTGGAACTAGGCTTCCAG+TGG | - | chr1.4:82093815-82093834 | MS.gene71606:intron | 55.0% | |
| GGCGTGTTCACGACTCATAG+TGG | + | chr1.4:82097130-82097149 | None:intergenic | 55.0% | |
| GTAGGGCTCCCCCATTGAAA+TGG | + | chr1.4:82095354-82095373 | None:intergenic | 55.0% | |
| TCCAGTTGCTGCGCCAAACA+AGG | + | chr1.4:82095946-82095965 | None:intergenic | 55.0% | |
| TCTGTACTTAGCCGCGGTGT+TGG | - | chr1.4:82095805-82095824 | MS.gene71606:intron | 55.0% | |
| TGACAGTGGGAGACACTGGT+GGG | - | chr1.4:82097161-82097180 | MS.gene71606:CDS | 55.0% | |
| TGAGCAGCTTCAGCTGGACT+TGG | - | chr1.4:82096799-82096818 | MS.gene71606:CDS | 55.0% | |
| ! | ACAAGGGGAACAGCACTGAG+AGG | + | chr1.4:82094297-82094316 | None:intergenic | 55.0% |
| ! | AGTTGCCGTACTGACCGATC+TGG | - | chr1.4:82095033-82095052 | MS.gene71606:intron | 55.0% |
| ! | CAAGGGGAACAGCACTGAGA+GGG | + | chr1.4:82094296-82094315 | None:intergenic | 55.0% |
| ! | GTTGCCGTACTGACCGATCT+GGG | - | chr1.4:82095034-82095053 | MS.gene71606:intron | 55.0% |
| ACCGTGACAGTGGGAGACAC+TGG | - | chr1.4:82097157-82097176 | MS.gene71606:intron | 60.0% | |
| CCCACTGTCACGGTGAGTTG+AGG | + | chr1.4:82097151-82097170 | None:intergenic | 60.0% | |
| CCGCGGCTAAGTACAGAAGG+TGG | + | chr1.4:82095802-82095821 | None:intergenic | 60.0% | |
| GCAGCTGGTGAAAGTGGTGG+TGG | - | chr1.4:82093336-82093355 | MS.gene71606:CDS | 60.0% | |
| GCCTCAACTCACCGTGACAG+TGG | - | chr1.4:82097147-82097166 | MS.gene71606:intron | 60.0% | |
| GGACATGGCCCTGCTCATAC+TGG | - | chr1.4:82096934-82096953 | MS.gene71606:intron | 60.0% | |
| GTGACAGTGGGAGACACTGG+TGG | - | chr1.4:82097160-82097179 | MS.gene71606:CDS | 60.0% | |
| TGCCGCTCCATGGTCAGTCT+TGG | - | chr1.4:82095065-82095084 | MS.gene71606:intron | 60.0% | |
| !! | GAAAGTGGTGGTGGTGGTGG+TGG | - | chr1.4:82093345-82093364 | MS.gene71606:CDS | 60.0% |
| !! | GCCTTGTTTGGCGCAGCAAC+TGG | - | chr1.4:82095942-82095961 | MS.gene71606:intron | 60.0% |
| !! | GCTGGTGAAAGTGGTGGTGG+TGG | - | chr1.4:82093339-82093358 | MS.gene71606:CDS | 60.0% |
| !! | GGTGAAAGTGGTGGTGGTGG+TGG | - | chr1.4:82093342-82093361 | MS.gene71606:CDS | 60.0% |
| !! | TACTTAGCCGCGGTGTTGGC+TGG | - | chr1.4:82095809-82095828 | MS.gene71606:intron | 60.0% |
| GTACCAGCCAGCCAACACCG+CGG | + | chr1.4:82095819-82095838 | None:intergenic | 65.0% | |
| !! | TAGCCGCGGTGTTGGCTGGC+TGG | - | chr1.4:82095813-82095832 | MS.gene71606:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82093333 | 82097272 | 82093333 | ID=MS.gene71606 |
| chr1.4 | mRNA | 82093333 | 82097272 | 82093333 | ID=MS.gene71606.t1;Parent=MS.gene71606 |
| chr1.4 | exon | 82097158 | 82097272 | 82097158 | ID=MS.gene71606.t1.exon1;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82097158 | 82097272 | 82097158 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82096952 | 82097049 | 82096952 | ID=MS.gene71606.t1.exon2;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82096952 | 82097049 | 82096952 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82096682 | 82096858 | 82096682 | ID=MS.gene71606.t1.exon3;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82096682 | 82096858 | 82096682 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82096448 | 82096548 | 82096448 | ID=MS.gene71606.t1.exon4;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82096448 | 82096548 | 82096448 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82096246 | 82096321 | 82096246 | ID=MS.gene71606.t1.exon5;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82096246 | 82096321 | 82096246 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82096069 | 82096128 | 82096069 | ID=MS.gene71606.t1.exon6;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82096069 | 82096128 | 82096069 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82095529 | 82095707 | 82095529 | ID=MS.gene71606.t1.exon7;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82095529 | 82095707 | 82095529 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82095174 | 82095270 | 82095174 | ID=MS.gene71606.t1.exon8;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82095174 | 82095270 | 82095174 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82094771 | 82094857 | 82094771 | ID=MS.gene71606.t1.exon9;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82094771 | 82094857 | 82094771 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82094626 | 82094684 | 82094626 | ID=MS.gene71606.t1.exon10;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82094626 | 82094684 | 82094626 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82094386 | 82094477 | 82094386 | ID=MS.gene71606.t1.exon11;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82094386 | 82094477 | 82094386 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82094042 | 82094119 | 82094042 | ID=MS.gene71606.t1.exon12;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82094042 | 82094119 | 82094042 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82093639 | 82093799 | 82093639 | ID=MS.gene71606.t1.exon13;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82093639 | 82093799 | 82093639 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| chr1.4 | exon | 82093333 | 82093551 | 82093333 | ID=MS.gene71606.t1.exon14;Parent=MS.gene71606.t1 |
| chr1.4 | CDS | 82093333 | 82093551 | 82093333 | ID=cds.MS.gene71606.t1;Parent=MS.gene71606.t1 |
| Gene Sequence |
| Protein sequence |
