Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86930.t1 | XP_013469975.1 | 96.8 | 531 | 13 | 1 | 1 | 531 | 1 | 527 | 1.90E-275 | 958 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86930.t1 | P93039 | 66.1 | 522 | 174 | 2 | 12 | 530 | 4 | 525 | 1.1e-194 | 681.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86930.t1 | A0A072VRF8 | 96.8 | 531 | 13 | 1 | 1 | 531 | 1 | 527 | 1.3e-275 | 958.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050082 | MS.gene86930 | 0.800455 | 1.43E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene86930 | MS.gene59470 | PPI |
| MS.gene56947 | MS.gene86930 | PPI |
| MS.gene86930 | MS.gene27811 | PPI |
| MS.gene86930 | MS.gene68064 | PPI |
| MS.gene86930 | MS.gene012865 | PPI |
| MS.gene86930 | MS.gene044204 | PPI |
| MS.gene70604 | MS.gene86930 | PPI |
| MS.gene022275 | MS.gene86930 | PPI |
| MS.gene86930 | MS.gene32869 | PPI |
| MS.gene074377 | MS.gene86930 | PPI |
| MS.gene010624 | MS.gene86930 | PPI |
| MS.gene86930 | MS.gene015069 | PPI |
| MS.gene25932 | MS.gene86930 | PPI |
| MS.gene86930 | MS.gene27812 | PPI |
| MS.gene86930 | MS.gene25800 | PPI |
| MS.gene86930 | MS.gene058853 | PPI |
| MS.gene86930 | MS.gene64768 | PPI |
| MS.gene86930 | MS.gene60344 | PPI |
| MS.gene033221 | MS.gene86930 | PPI |
| MS.gene86930 | MS.gene70718 | PPI |
| MS.gene37474 | MS.gene86930 | PPI |
| MS.gene86930 | MS.gene53408 | PPI |
| MS.gene86930 | MS.gene023585 | PPI |
| MS.gene86930 | MS.gene43290 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86930.t1 | MTR_1g106085 | 96.987 | 531 | 12 | 1 | 1 | 531 | 1 | 527 | 0.0 | 1032 |
| MS.gene86930.t1 | MTR_3g078270 | 60.413 | 533 | 206 | 3 | 1 | 530 | 1 | 531 | 0.0 | 663 |
| MS.gene86930.t1 | MTR_8g063220 | 60.264 | 531 | 205 | 3 | 6 | 530 | 2 | 532 | 0.0 | 663 |
| MS.gene86930.t1 | MTR_4g106750 | 59.287 | 533 | 212 | 3 | 1 | 530 | 1 | 531 | 0.0 | 651 |
| MS.gene86930.t1 | MTR_3g103230 | 58.641 | 515 | 207 | 3 | 19 | 530 | 42 | 553 | 0.0 | 636 |
| MS.gene86930.t1 | MTR_5g035180 | 59.656 | 523 | 207 | 4 | 12 | 530 | 15 | 537 | 0.0 | 631 |
| MS.gene86930.t1 | MTR_4g106750 | 59.751 | 482 | 192 | 1 | 51 | 530 | 1 | 482 | 0.0 | 598 |
| MS.gene86930.t1 | MTR_5g022110 | 56.107 | 524 | 222 | 4 | 12 | 530 | 26 | 546 | 0.0 | 594 |
| MS.gene86930.t1 | MTR_8g086520 | 54.111 | 523 | 234 | 3 | 12 | 531 | 5 | 524 | 0.0 | 585 |
| MS.gene86930.t1 | MTR_2g016460 | 54.739 | 517 | 227 | 4 | 19 | 531 | 11 | 524 | 0.0 | 581 |
| MS.gene86930.t1 | MTR_3g080390 | 56.117 | 515 | 220 | 3 | 19 | 529 | 6 | 518 | 0.0 | 569 |
| MS.gene86930.t1 | MTR_1g021120 | 52.437 | 513 | 240 | 3 | 20 | 530 | 36 | 546 | 0.0 | 527 |
| MS.gene86930.t1 | MTR_8g086520 | 55.034 | 447 | 197 | 2 | 12 | 455 | 5 | 450 | 1.67e-176 | 506 |
| MS.gene86930.t1 | MTR_4g106750 | 61.247 | 369 | 141 | 1 | 164 | 530 | 11 | 379 | 1.08e-168 | 482 |
| MS.gene86930.t1 | MTR_8g086520 | 56.683 | 404 | 169 | 3 | 129 | 529 | 6 | 406 | 1.02e-164 | 473 |
| MS.gene86930.t1 | MTR_8g086520 | 53.885 | 399 | 180 | 2 | 12 | 407 | 5 | 402 | 8.67e-152 | 440 |
| MS.gene86930.t1 | MTR_8g068550 | 32.955 | 528 | 302 | 6 | 41 | 528 | 240 | 755 | 1.95e-96 | 309 |
| MS.gene86930.t1 | MTR_5g032020 | 33.083 | 532 | 316 | 6 | 27 | 524 | 168 | 693 | 4.54e-95 | 304 |
| MS.gene86930.t1 | MTR_2g084895 | 33.022 | 536 | 313 | 9 | 31 | 528 | 151 | 678 | 1.86e-89 | 289 |
| MS.gene86930.t1 | MTR_4g055290 | 33.525 | 522 | 298 | 8 | 44 | 528 | 171 | 680 | 2.22e-85 | 278 |
| MS.gene86930.t1 | MTR_2g103510 | 31.569 | 548 | 307 | 13 | 13 | 528 | 80 | 591 | 1.96e-81 | 265 |
| MS.gene86930.t1 | MTR_8g086535 | 64.583 | 96 | 32 | 1 | 314 | 407 | 23 | 118 | 6.80e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86930.t1 | AT1G49960 | 69.540 | 522 | 156 | 2 | 12 | 530 | 4 | 525 | 0.0 | 718 |
| MS.gene86930.t1 | AT5G62890 | 60.413 | 533 | 206 | 4 | 1 | 530 | 1 | 531 | 0.0 | 654 |
| MS.gene86930.t1 | AT5G62890 | 60.413 | 533 | 206 | 4 | 1 | 530 | 1 | 531 | 0.0 | 654 |
| MS.gene86930.t1 | AT5G62890 | 60.413 | 533 | 206 | 4 | 1 | 530 | 1 | 531 | 0.0 | 654 |
| MS.gene86930.t1 | AT1G60030 | 58.812 | 522 | 212 | 3 | 12 | 530 | 16 | 537 | 0.0 | 643 |
| MS.gene86930.t1 | AT1G10540 | 56.391 | 532 | 226 | 3 | 5 | 530 | 7 | 538 | 0.0 | 627 |
| MS.gene86930.t1 | AT5G49990 | 58.349 | 533 | 213 | 3 | 1 | 530 | 1 | 527 | 0.0 | 611 |
| MS.gene86930.t1 | AT5G49990 | 58.349 | 533 | 213 | 3 | 1 | 530 | 1 | 527 | 0.0 | 611 |
| MS.gene86930.t1 | AT5G49990 | 58.349 | 533 | 213 | 3 | 1 | 530 | 1 | 527 | 0.0 | 611 |
| MS.gene86930.t1 | AT5G49990 | 58.349 | 533 | 213 | 3 | 1 | 530 | 1 | 527 | 0.0 | 611 |
| MS.gene86930.t1 | AT1G65550 | 53.308 | 529 | 235 | 4 | 12 | 530 | 14 | 540 | 0.0 | 595 |
| MS.gene86930.t1 | AT2G34190 | 55.706 | 517 | 222 | 4 | 19 | 531 | 11 | 524 | 0.0 | 586 |
| MS.gene86930.t1 | AT5G62890 | 61.842 | 456 | 168 | 4 | 8 | 457 | 3 | 458 | 0.0 | 565 |
| MS.gene86930.t1 | AT2G05760 | 53.398 | 515 | 234 | 3 | 19 | 529 | 6 | 518 | 0.0 | 558 |
| MS.gene86930.t1 | AT2G26510 | 50.778 | 514 | 249 | 3 | 20 | 530 | 36 | 548 | 1.48e-178 | 514 |
| MS.gene86930.t1 | AT1G10540 | 57.068 | 382 | 158 | 3 | 5 | 380 | 7 | 388 | 2.07e-152 | 441 |
| MS.gene86930.t1 | AT5G25420 | 45.898 | 451 | 177 | 4 | 12 | 461 | 26 | 410 | 4.74e-135 | 398 |
| MS.gene86930.t1 | AT2G26510 | 53.022 | 364 | 168 | 2 | 20 | 380 | 36 | 399 | 1.60e-126 | 376 |
| MS.gene86930.t1 | AT2G26510 | 52.422 | 351 | 164 | 2 | 20 | 367 | 36 | 386 | 8.41e-120 | 359 |
| MS.gene86930.t1 | AT4G38050 | 33.210 | 539 | 306 | 7 | 31 | 528 | 179 | 704 | 1.27e-87 | 285 |
| MS.gene86930.t1 | AT2G27810 | 33.516 | 546 | 318 | 8 | 21 | 528 | 163 | 701 | 1.13e-86 | 282 |
| MS.gene86930.t1 | AT2G27810 | 32.632 | 570 | 315 | 10 | 21 | 528 | 163 | 725 | 4.70e-82 | 270 |
| MS.gene86930.t1 | AT2G27810 | 35.349 | 430 | 253 | 6 | 21 | 428 | 163 | 589 | 4.47e-72 | 241 |
| MS.gene86930.t1 | AT2G27810 | 35.770 | 383 | 221 | 6 | 21 | 381 | 163 | 542 | 1.83e-62 | 214 |
Find 129 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACTATTCTTGTTCCTTTGA+TGG | 0.198717 | 1.2:-79093294 | MS.gene86930:CDS |
| TCTTCCTGCATTGGTTATTC+TGG | 0.207207 | 1.2:-79092426 | MS.gene86930:CDS |
| GTTTATAAATCAGGTAAATT+TGG | 0.217881 | 1.2:-79090453 | MS.gene86930:intron |
| CAATACACGGCTGCTATTAT+TGG | 0.243252 | 1.2:+79090405 | None:intergenic |
| AATTATAGTTGCTTACTTCT+TGG | 0.265429 | 1.2:-79089825 | MS.gene86930:CDS |
| GCCTTGTTTGGCGCAGCAAC+TGG | 0.284735 | 1.2:-79090984 | MS.gene86930:CDS |
| CTCGAATATCTCACACTATC+TGG | 0.311355 | 1.2:-79090013 | MS.gene86930:CDS |
| ACTCTTCTGGATGCCTTGTT+TGG | 0.338596 | 1.2:-79090996 | MS.gene86930:CDS |
| ACTATAATTGCAACAGTTGC+TGG | 0.341823 | 1.2:+79089839 | None:intergenic |
| ACTAGGCTTCCAGTGGTTAT+AGG | 0.341886 | 1.2:-79093104 | MS.gene86930:CDS |
| TTAGGGTATAGGCACTCTTC+TGG | 0.345374 | 1.2:-79091009 | MS.gene86930:intron |
| GTTCCCCTTGTAACTCTAAC+TGG | 0.347094 | 1.2:-79092620 | MS.gene86930:CDS |
| GACAGACCTGACGAGGATTA+AGG | 0.355818 | 1.2:+79093018 | None:intergenic |
| AATCTCTTGTAACAGTCAAC+TGG | 0.358889 | 1.2:-79091193 | MS.gene86930:intron |
| TACTTAGCCGCGGTGTTGGC+TGG | 0.363924 | 1.2:-79091117 | MS.gene86930:CDS |
| GGACATGGCCCTGCTCATAC+TGG | 0.367899 | 1.2:-79089992 | MS.gene86930:CDS |
| TTCATCGCTGCATCAAGATT+TGG | 0.370746 | 1.2:-79091166 | MS.gene86930:CDS |
| TTACTGTTGATTGCTGTGTT+AGG | 0.377345 | 1.2:-79093505 | MS.gene86930:CDS |
| GGCCTAGGACTCTTTGTGAT+AGG | 0.379791 | 1.2:-79092599 | MS.gene86930:CDS |
| TGAGCAGCTTCAGCTGGACT+TGG | 0.390320 | 1.2:-79090127 | MS.gene86930:intron |
| CAACATTACATTGTTATGCT+TGG | 0.391706 | 1.2:-79093335 | MS.gene86930:CDS |
| AGTTGCCGTACTGACCGATC+TGG | 0.396352 | 1.2:-79091893 | MS.gene86930:CDS |
| ACTATTCTTGTTCCTTTGAT+GGG | 0.400549 | 1.2:-79093293 | MS.gene86930:CDS |
| GTGTTAGGAGCTCACCTTCA+TGG | 0.405039 | 1.2:-79093490 | MS.gene86930:CDS |
| GCTGGTGAAAGTGGTGGTGG+TGG | 0.405192 | 1.2:-79093572 | MS.gene86930:CDS |
| AGTTTGATGATTTAGGGTAT+AGG | 0.429815 | 1.2:-79091020 | MS.gene86930:intron |
| GCCTAGGACTCTTTGTGATA+GGG | 0.430014 | 1.2:-79092598 | MS.gene86930:CDS |
| GGTGAAAGTGGTGGTGGTGG+TGG | 0.432523 | 1.2:-79093569 | MS.gene86930:CDS |
| AGTCAAAATGCAGGATTGTT+GGG | 0.433330 | 1.2:-79090800 | MS.gene86930:CDS |
| GAGTTCCGTATCCATTTCAA+TGG | 0.438140 | 1.2:-79091586 | MS.gene86930:CDS |
| ATCAGAAGTGATGAGTTCTA+TGG | 0.440514 | 1.2:-79089716 | MS.gene86930:CDS |
| CTGTGATGAGCAGCTTCAGC+TGG | 0.443945 | 1.2:-79090133 | MS.gene86930:intron |
| ACTTCTGATATCCTGATTGA+AGG | 0.449917 | 1.2:+79089730 | None:intergenic |
| AAAATTCAGGACCTTCAATC+AGG | 0.451074 | 1.2:-79089741 | MS.gene86930:CDS |
| TAGTCAAAATGCAGGATTGT+TGG | 0.453962 | 1.2:-79090801 | MS.gene86930:CDS |
| TGTTGGGTCTAACACGCGTT+GGG | 0.454667 | 1.2:-79090784 | MS.gene86930:CDS |
| TGCAGACATGGCTTGGAACT+AGG | 0.457743 | 1.2:-79093121 | MS.gene86930:CDS |
| TTGGCAGATTGTGTTGAGAT+TGG | 0.458776 | 1.2:-79092449 | MS.gene86930:CDS |
| CATCAAAGGAACAAGAATAG+TGG | 0.469158 | 1.2:+79093295 | None:intergenic |
| TCTGTACTTAGCCGCGGTGT+TGG | 0.469403 | 1.2:-79091121 | MS.gene86930:CDS |
| TAGCCGCGGTGTTGGCTGGC+TGG | 0.472588 | 1.2:-79091113 | MS.gene86930:intron |
| TGTGTTCTCTTTGCATATGT+CGG | 0.473198 | 1.2:-79090384 | MS.gene86930:intron |
| AGTTCCGTATCCATTTCAAT+GGG | 0.475091 | 1.2:-79091585 | MS.gene86930:CDS |
| ACAGTAAGTTGTTCCTTGAC+AGG | 0.477631 | 1.2:+79093521 | None:intergenic |
| ACTCTGTTGCAGACATGGCT+TGG | 0.479227 | 1.2:-79093128 | MS.gene86930:CDS |
| TGTATTCCTTAATCCTCGTC+AGG | 0.479851 | 1.2:-79093024 | MS.gene86930:intron |
| TGAGATTGGTCTTCCTGCAT+TGG | 0.479893 | 1.2:-79092435 | MS.gene86930:CDS |
| CTAGGCCAGTTAGAGTTACA+AGG | 0.480139 | 1.2:+79092615 | None:intergenic |
| CTTGTTCCTTTGATGGGTGG+TGG | 0.483527 | 1.2:-79093287 | MS.gene86930:CDS |
| AGTTGTTCCTTGACAGGATG+AGG | 0.494608 | 1.2:+79093527 | None:intergenic |
| ATATCACCAACATTGAAAGT+AGG | 0.500875 | 1.2:+79091557 | None:intergenic |
| TGCCCCTTGAATAGCTCTCA+TGG | 0.504533 | 1.2:+79092856 | None:intergenic |
| TTCTCTTGTTGCAATTGTAG+AGG | 0.505227 | 1.2:-79091516 | MS.gene86930:intron |
| GAGAATGCCACAGAAATAGC+TGG | 0.506607 | 1.2:+79093059 | None:intergenic |
| GGTTAATTACTGCCGCTCCA+TGG | 0.508265 | 1.2:-79091871 | MS.gene86930:intron |
| TATCACCAACATTGAAAGTA+GGG | 0.515321 | 1.2:+79091558 | None:intergenic |
| CTTGTAACTCTAACTGGCCT+AGG | 0.515850 | 1.2:-79092614 | MS.gene86930:CDS |
| TCAACACTCTGTTGCAGACA+TGG | 0.520169 | 1.2:-79093133 | MS.gene86930:CDS |
| TCTTTGTGATAGGGTTTCCA+AGG | 0.520833 | 1.2:-79092589 | MS.gene86930:CDS |
| AGAGTCATTCAAATATCAGC+TGG | 0.521155 | 1.2:-79090755 | MS.gene86930:CDS |
| ATGACCAGAATAACCAATGC+AGG | 0.528438 | 1.2:+79092422 | None:intergenic |
| TTTGCAGTCATAGTCACGAT+TGG | 0.530572 | 1.2:-79091989 | MS.gene86930:CDS |
| TACAGATCAATGTTCATCGT+TGG | 0.532814 | 1.2:-79090076 | MS.gene86930:CDS |
| GAGGTGGATCCAGTATGAGC+AGG | 0.532820 | 1.2:+79089983 | None:intergenic |
| TATTCTGGTCATCCTCTCCC+AGG | 0.534906 | 1.2:-79092411 | MS.gene86930:intron |
| ACCCTATCACAAAGAGTCCT+AGG | 0.536299 | 1.2:+79092597 | None:intergenic |
| GTTGCCGTACTGACCGATCT+GGG | 0.544476 | 1.2:-79091892 | MS.gene86930:CDS |
| GGGAGCCCTACTTTCAATGT+TGG | 0.546761 | 1.2:-79091563 | MS.gene86930:CDS |
| CAATCCATGAGAGCTATTCA+AGG | 0.546761 | 1.2:-79092860 | MS.gene86930:CDS |
| TCCAGTTGCTGCGCCAAACA+AGG | 0.547910 | 1.2:+79090983 | None:intergenic |
| AAAGATGCTCCTATAACCAC+TGG | 0.549867 | 1.2:+79093095 | None:intergenic |
| AATGAGTGCATTTAGGCTGA+AGG | 0.552105 | 1.2:+79089665 | None:intergenic |
| TAGTCACGATTGGAATTGCA+TGG | 0.554844 | 1.2:-79091979 | MS.gene86930:CDS |
| TCTTATTCCAGCTATTTCTG+TGG | 0.555907 | 1.2:-79093066 | MS.gene86930:CDS |
| CCCACTGTCACGGTGAGTTG+AGG | 0.557039 | 1.2:+79089778 | None:intergenic |
| ATTCTTGTTCCTTTGATGGG+TGG | 0.557666 | 1.2:-79093290 | MS.gene86930:CDS |
| GCAGCTGGTGAAAGTGGTGG+TGG | 0.562807 | 1.2:-79093575 | MS.gene86930:CDS |
| ATCGCTGCATCAAGATTTGG+CGG | 0.564712 | 1.2:-79091163 | MS.gene86930:CDS |
| TCGTGACTATGACTGCAAAT+CGG | 0.567669 | 1.2:+79091993 | None:intergenic |
| CAGATAGTGTGAGATATTCG+AGG | 0.569216 | 1.2:+79090014 | None:intergenic |
| GAAAGAGAAACAATGGCAGC+TGG | 0.572288 | 1.2:-79093590 | None:intergenic |
| CCACAAAAGATTAAATCAAG+AGG | 0.575339 | 1.2:-79092022 | MS.gene86930:CDS |
| ACCAGTGTCTCCCACTGTCA+CGG | 0.575457 | 1.2:+79089768 | None:intergenic |
| CGGCAGTAATTAACCCAGAT+CGG | 0.576534 | 1.2:+79091879 | None:intergenic |
| ATGAGTGCATTTAGGCTGAA+GGG | 0.578950 | 1.2:+79089666 | None:intergenic |
| AATCCATGAGAGCTATTCAA+GGG | 0.583596 | 1.2:-79092859 | MS.gene86930:CDS |
| AGTCACGATTGGAATTGCAT+GGG | 0.588659 | 1.2:-79091978 | MS.gene86930:CDS |
| ATGGGTTACTTACGCCATGA+AGG | 0.588819 | 1.2:+79093476 | None:intergenic |
| TAAAGTAACATACCTGGGAG+AGG | 0.589098 | 1.2:+79092399 | None:intergenic |
| ACCGTGACAGTGGGAGACAC+TGG | 0.589213 | 1.2:-79089769 | MS.gene86930:CDS |
| TTATTGCATTTGCAGCTGAA+GGG | 0.589241 | 1.2:-79093373 | MS.gene86930:intron |
| GCCTCAACTCACCGTGACAG+TGG | 0.591700 | 1.2:-79089779 | MS.gene86930:CDS |
| ACGGCTGCTATTATTGGCAA+TGG | 0.594763 | 1.2:+79090411 | None:intergenic |
| CTTTGTGATAGGGTTTCCAA+GGG | 0.595097 | 1.2:-79092588 | MS.gene86930:intron |
| TTAACCCAGATCGGTCAGTA+CGG | 0.603808 | 1.2:+79091888 | None:intergenic |
| CCTCAACTCACCGTGACAGT+GGG | 0.606252 | 1.2:-79089778 | MS.gene86930:CDS |
| CAAAATGTACACTGATGCGG+TGG | 0.607400 | 1.2:+79090959 | None:intergenic |
| AGGTGGATCCAGTATGAGCA+GGG | 0.613316 | 1.2:+79089984 | None:intergenic |
| TGCTCATACTGGATCCACCT+CGG | 0.614287 | 1.2:-79089981 | MS.gene86930:intron |
| ACAATGGCAGCTGGTGAAAG+TGG | 0.615031 | 1.2:-79093581 | MS.gene86930:CDS |
| TTCCGTATCCATTTCAATGG+GGG | 0.618485 | 1.2:-79091583 | MS.gene86930:CDS |
| ACATTGCCACCACCCATCAA+AGG | 0.619800 | 1.2:+79093281 | None:intergenic |
| ATCTCTTGTAACAGTCAACT+GGG | 0.625026 | 1.2:-79091192 | MS.gene86930:intron |
| AATAGTGGAAACAATGACAA+TGG | 0.627526 | 1.2:+79093310 | None:intergenic |
| TTGTTGGGTCTAACACGCGT+TGG | 0.628068 | 1.2:-79090785 | MS.gene86930:CDS |
| GTCACGATTGGAATTGCATG+GGG | 0.628860 | 1.2:-79091977 | MS.gene86930:CDS |
| GTGACAGTGGGAGACACTGG+TGG | 0.631148 | 1.2:-79089766 | MS.gene86930:CDS |
| ACACCGCGGCTAAGTACAGA+AGG | 0.633774 | 1.2:+79091124 | None:intergenic |
| AGATATTCGAGGAAATATTG+TGG | 0.636493 | 1.2:+79090025 | None:intergenic |
| GCTTGGAACTAGGCTTCCAG+TGG | 0.642697 | 1.2:-79093111 | MS.gene86930:CDS |
| CCACCTTCTGTACTTAGCCG+CGG | 0.651344 | 1.2:-79091127 | MS.gene86930:CDS |
| AAGATATATATGTACCGAGG+TGG | 0.652379 | 1.2:+79089967 | None:intergenic |
| CAAGGGGAACAGCACTGAGA+GGG | 0.652878 | 1.2:+79092633 | None:intergenic |
| TGCAAAGAGAACACAATACA+CGG | 0.654533 | 1.2:+79090392 | None:intergenic |
| TATCTCACACTATCTGGACA+TGG | 0.661111 | 1.2:-79090007 | MS.gene86930:CDS |
| TAGGCCAGTTAGAGTTACAA+GGG | 0.662208 | 1.2:+79092616 | None:intergenic |
| GGCGTGTTCACGACTCATAG+TGG | 0.664546 | 1.2:+79089799 | None:intergenic |
| TTACACAGACAGACCTGACG+AGG | 0.671529 | 1.2:+79093011 | None:intergenic |
| TACCAAGACTGACCATGGAG+CGG | 0.672864 | 1.2:+79091859 | None:intergenic |
| ATCCATGAGAGCTATTCAAG+GGG | 0.676734 | 1.2:-79092858 | MS.gene86930:CDS |
| TGACAGTGGGAGACACTGGT+GGG | 0.683936 | 1.2:-79089765 | MS.gene86930:CDS |
| ACAAGGGGAACAGCACTGAG+AGG | 0.687831 | 1.2:+79092632 | None:intergenic |
| CAACAAAATGTACACTGATG+CGG | 0.695683 | 1.2:+79090956 | None:intergenic |
| CCGCGGCTAAGTACAGAAGG+TGG | 0.698072 | 1.2:+79091127 | None:intergenic |
| ATGGCAGCTGGTGAAAGTGG+TGG | 0.716876 | 1.2:-79093578 | MS.gene86930:CDS |
| AGGCCAGTTAGAGTTACAAG+GGG | 0.717548 | 1.2:+79092617 | None:intergenic |
| GTTCCGTATCCATTTCAATG+GGG | 0.719924 | 1.2:-79091584 | MS.gene86930:CDS |
| CAACTGAATTGAGTACTCAG+TGG | 0.730095 | 1.2:+79091911 | None:intergenic |
| GTACCAGCCAGCCAACACCG+CGG | 0.843946 | 1.2:+79091110 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTTAAATAAATGATCATT+AGG | + | chr1.2:79090752-79090771 | None:intergenic | 15.0% |
| !!! | TTAATTTTGTTATGTTTTGA+GGG | - | chr1.2:79090042-79090061 | MS.gene86930:CDS | 15.0% |
| !!! | TTTAATTTTGTTATGTTTTG+AGG | - | chr1.2:79090041-79090060 | MS.gene86930:CDS | 15.0% |
| !!! | TTTAATTTTTAGTTTCCATT+TGG | - | chr1.2:79092005-79092024 | MS.gene86930:CDS | 15.0% |
| !! | AAAACCAAATTACAACAAAA+TGG | + | chr1.2:79089800-79089819 | None:intergenic | 20.0% |
| !! | AAACCAAATTACAACAAAAT+GGG | + | chr1.2:79089799-79089818 | None:intergenic | 20.0% |
| !! | AATATCAAAGTATAACCAAA+TGG | + | chr1.2:79092023-79092042 | None:intergenic | 20.0% |
| !! | ACTTTATGAGAAACAAAAAA+TGG | + | chr1.2:79089833-79089852 | None:intergenic | 20.0% |
| !! | AGTAAAAAACAAATTATCCA+AGG | + | chr1.2:79092393-79092412 | None:intergenic | 20.0% |
| !! | ATCAAAATAAGAATCAAAGA+TGG | + | chr1.2:79093345-79093364 | None:intergenic | 20.0% |
| !! | ATTAAAGTAAGAGATTTGAA+TGG | - | chr1.2:79091093-79091112 | MS.gene86930:intron | 20.0% |
| !! | ATTGTATTTATTCATATTGC+AGG | - | chr1.2:79090590-79090609 | MS.gene86930:intron | 20.0% |
| !! | CTTTATGAGAAACAAAAAAT+GGG | + | chr1.2:79089832-79089851 | None:intergenic | 20.0% |
| !! | GTTTACAACTAAATGTTATT+GGG | - | chr1.2:79091541-79091560 | MS.gene86930:CDS | 20.0% |
| !! | GTTTATAAATCAGGTAAATT+TGG | - | chr1.2:79092801-79092820 | MS.gene86930:CDS | 20.0% |
| !! | TGTTTACAACTAAATGTTAT+TGG | - | chr1.2:79091540-79091559 | MS.gene86930:CDS | 20.0% |
| !!! | AACTTTTTCTTCATTTTGTT+TGG | - | chr1.2:79090003-79090022 | MS.gene86930:CDS | 20.0% |
| !!! | ATTTAACAAACATACTCTTT+TGG | - | chr1.2:79090763-79090782 | MS.gene86930:CDS | 20.0% |
| !!! | GAAAGAATTTGACATTTTAA+AGG | + | chr1.2:79093079-79093098 | None:intergenic | 20.0% |
| !!! | GAAATCACTTATTTGTTTTT+TGG | + | chr1.2:79092994-79093013 | None:intergenic | 20.0% |
| !!! | TAATTTTATCATCCTTATGT+TGG | - | chr1.2:79092935-79092954 | MS.gene86930:intron | 20.0% |
| ! | AAAAATCTGTTCAGATTCAT+AGG | + | chr1.2:79093568-79093587 | None:intergenic | 25.0% |
| ! | AATAGCCAGATTACAATATT+CGG | + | chr1.2:79091966-79091985 | None:intergenic | 25.0% |
| ! | AATTATAGTTGCTTACTTCT+TGG | - | chr1.2:79093429-79093448 | MS.gene86930:intron | 25.0% |
| ! | ATATCACTGAGTAAATTACA+AGG | + | chr1.2:79091002-79091021 | None:intergenic | 25.0% |
| ! | ATTTACCTGATTTATAAACC+CGG | + | chr1.2:79092800-79092819 | None:intergenic | 25.0% |
| ! | CTTTACATAGATTGTTTACT+TGG | - | chr1.2:79090295-79090314 | MS.gene86930:intron | 25.0% |
| ! | GTAAATAAAGTAACATACCT+GGG | + | chr1.2:79090863-79090882 | None:intergenic | 25.0% |
| ! | TATATCCGAATATTGTAATC+TGG | - | chr1.2:79091958-79091977 | MS.gene86930:CDS | 25.0% |
| ! | TGCTACACAAATATTTCAAA+AGG | + | chr1.2:79090918-79090937 | None:intergenic | 25.0% |
| !! | AAACAATTTGTTCATTCCTA+TGG | - | chr1.2:79092637-79092656 | MS.gene86930:CDS | 25.0% |
| !! | AAATATAGACTAACTTGTGT+GGG | - | chr1.2:79091788-79091807 | MS.gene86930:intron | 25.0% |
| !! | ATAGTGTCTTTTAATGCATT+TGG | - | chr1.2:79090509-79090528 | MS.gene86930:intron | 25.0% |
| !! | ATGAATAGTTTTCATTAGCT+TGG | - | chr1.2:79090320-79090339 | MS.gene86930:intron | 25.0% |
| !! | ATGCTTTTCTTCTCTATATT+TGG | - | chr1.2:79092526-79092545 | MS.gene86930:intron | 25.0% |
| !! | TAAATATAGACTAACTTGTG+TGG | - | chr1.2:79091787-79091806 | MS.gene86930:intron | 25.0% |
| !! | TGTTGAAGTTTGATGATTTA+GGG | - | chr1.2:79092228-79092247 | MS.gene86930:intron | 25.0% |
| !!! | TAACCCATTTTGTTGTAATT+TGG | - | chr1.2:79089793-79089812 | MS.gene86930:CDS | 25.0% |
| !!! | TCTCATAAAGTTTTAAGCTT+TGG | - | chr1.2:79089842-79089861 | MS.gene86930:CDS | 25.0% |
| AAAGATGTTGAATGAGATAG+AGG | + | chr1.2:79090887-79090906 | None:intergenic | 30.0% | |
| AAAGTAAGAGATTTGAATGG+TGG | - | chr1.2:79091096-79091115 | MS.gene86930:intron | 30.0% | |
| AAGATGTTGAATGAGATAGA+GGG | + | chr1.2:79090886-79090905 | None:intergenic | 30.0% | |
| AATACTCAGAAATTCACAGA+AGG | + | chr1.2:79092567-79092586 | None:intergenic | 30.0% | |
| ACTATTCTTGTTCCTTTGAT+GGG | - | chr1.2:79089961-79089980 | MS.gene86930:intron | 30.0% | |
| ACTGTTACAAGAGATTGAAA+AGG | + | chr1.2:79092057-79092076 | None:intergenic | 30.0% | |
| AGATATTCGAGGAAATATTG+TGG | + | chr1.2:79093232-79093251 | None:intergenic | 30.0% | |
| ATACTCAGAAATTCACAGAA+GGG | + | chr1.2:79092566-79092585 | None:intergenic | 30.0% | |
| ATATCACCAACATTGAAAGT+AGG | + | chr1.2:79091700-79091719 | None:intergenic | 30.0% | |
| ATGGTTATACTTATAGCAAG+AGG | + | chr1.2:79093326-79093345 | None:intergenic | 30.0% | |
| CAACATTACATTGTTATGCT+TGG | - | chr1.2:79089919-79089938 | MS.gene86930:intron | 30.0% | |
| CATGATCAATATGACATTGT+GGG | - | chr1.2:79091878-79091897 | MS.gene86930:CDS | 30.0% | |
| CCACAAAAGATTAAATCAAG+AGG | - | chr1.2:79091232-79091251 | MS.gene86930:intron | 30.0% | |
| CCTAAGAACTATTTGACAAT+AGG | + | chr1.2:79092338-79092357 | None:intergenic | 30.0% | |
| CCTATTGTCAAATAGTTCTT+AGG | - | chr1.2:79092335-79092354 | MS.gene86930:intron | 30.0% | |
| CTGTTACAAGAGATTGAAAA+GGG | + | chr1.2:79092056-79092075 | None:intergenic | 30.0% | |
| GACGTAATAGATGATATCTT+AGG | - | chr1.2:79091484-79091503 | MS.gene86930:intron | 30.0% | |
| GGTAAATAAAGTAACATACC+TGG | + | chr1.2:79090864-79090883 | None:intergenic | 30.0% | |
| GTAAATTACAAGGTAAGAGT+TGG | + | chr1.2:79090992-79091011 | None:intergenic | 30.0% | |
| GTAGAGAAAGCTAATTCAAA+TGG | + | chr1.2:79091612-79091631 | None:intergenic | 30.0% | |
| TAAATGTGAGAACAATGTTG+TGG | + | chr1.2:79092714-79092733 | None:intergenic | 30.0% | |
| TAGTTCTTAGGCTATATTCT+TGG | - | chr1.2:79092347-79092366 | MS.gene86930:intron | 30.0% | |
| TATCACCAACATTGAAAGTA+GGG | + | chr1.2:79091699-79091718 | None:intergenic | 30.0% | |
| TTATTAAGTGTCTTTGACCT+TGG | - | chr1.2:79092373-79092392 | MS.gene86930:intron | 30.0% | |
| ! | AATAGTGGAAACAATGACAA+TGG | + | chr1.2:79089947-79089966 | None:intergenic | 30.0% |
| ! | AATATAGACTAACTTGTGTG+GGG | - | chr1.2:79091789-79091808 | MS.gene86930:intron | 30.0% |
| ! | AGTTTGATGATTTAGGGTAT+AGG | - | chr1.2:79092234-79092253 | MS.gene86930:intron | 30.0% |
| ! | CCTCTTGATTTAATCTTTTG+TGG | + | chr1.2:79091235-79091254 | None:intergenic | 30.0% |
| ! | CTTATTGCTTCTTTTGTTCA+AGG | - | chr1.2:79090424-79090443 | MS.gene86930:CDS | 30.0% |
| ! | GTGTTGAAGTTTGATGATTT+AGG | - | chr1.2:79092227-79092246 | MS.gene86930:intron | 30.0% |
| ! | TCTAAGATATATATGTACCG+AGG | + | chr1.2:79093293-79093312 | None:intergenic | 30.0% |
| ! | TCTTTTGTTCAAGGAATGAT+TGG | - | chr1.2:79090433-79090452 | MS.gene86930:CDS | 30.0% |
| ! | TTTCCTTTTAGTCAAAATGC+AGG | - | chr1.2:79092445-79092464 | MS.gene86930:CDS | 30.0% |
| !! | ACATTGGTTTAACCAAAAAG+TGG | + | chr1.2:79091198-79091217 | None:intergenic | 30.0% |
| !! | GTGTTAATTTGTTGTGTTCT+TGG | - | chr1.2:79090349-79090368 | MS.gene86930:intron | 30.0% |
| !! | TTCTTGGTTTCATTTTTCAG+AGG | - | chr1.2:79090365-79090384 | MS.gene86930:intron | 30.0% |
| !! | TTGATGTTCTTTCCACTTTT+TGG | - | chr1.2:79091183-79091202 | MS.gene86930:intron | 30.0% |
| !!! | AATCCTGCATTTTGACTAAA+AGG | + | chr1.2:79092451-79092470 | None:intergenic | 30.0% |
| !!! | ATTGGATTTTTTGGATTCTG+GGG | - | chr1.2:79090451-79090470 | MS.gene86930:intron | 30.0% |
| !!! | ATTTGCTGAAATTTTGACTG+CGG | - | chr1.2:79091300-79091319 | MS.gene86930:intron | 30.0% |
| !!! | CAAGGAATGATTGGATTTTT+TGG | - | chr1.2:79090442-79090461 | MS.gene86930:CDS | 30.0% |
| !!! | GATGAAATCAGTTCTAGTTT+TGG | - | chr1.2:79090539-79090558 | MS.gene86930:intron | 30.0% |
| !!! | GATTGGATTTTTTGGATTCT+GGG | - | chr1.2:79090450-79090469 | MS.gene86930:intron | 30.0% |
| !!! | TGATTGGATTTTTTGGATTC+TGG | - | chr1.2:79090449-79090468 | MS.gene86930:intron | 30.0% |
| AAAATTCAGGACCTTCAATC+AGG | - | chr1.2:79093513-79093532 | MS.gene86930:CDS | 35.0% | |
| AAGATATATATGTACCGAGG+TGG | + | chr1.2:79093290-79093309 | None:intergenic | 35.0% | |
| AATCCATGAGAGCTATTCAA+GGG | - | chr1.2:79090395-79090414 | MS.gene86930:CDS | 35.0% | |
| AATCTCTTGTAACAGTCAAC+TGG | - | chr1.2:79092061-79092080 | MS.gene86930:intron | 35.0% | |
| AATGTACAACTAGAACAGCA+TGG | + | chr1.2:79090269-79090288 | None:intergenic | 35.0% | |
| ACTATAATTGCAACAGTTGC+TGG | + | chr1.2:79093418-79093437 | None:intergenic | 35.0% | |
| ACTTCTGATATCCTGATTGA+AGG | + | chr1.2:79093527-79093546 | None:intergenic | 35.0% | |
| AGAGTCATTCAAATATCAGC+TGG | - | chr1.2:79092499-79092518 | MS.gene86930:intron | 35.0% | |
| AGATGTTGAATGAGATAGAG+GGG | + | chr1.2:79090885-79090904 | None:intergenic | 35.0% | |
| AGTCAAAATGCAGGATTGTT+GGG | - | chr1.2:79092454-79092473 | MS.gene86930:intron | 35.0% | |
| AGTTCCGTATCCATTTCAAT+GGG | - | chr1.2:79091669-79091688 | MS.gene86930:intron | 35.0% | |
| ATCAGAAGTGATGAGTTCTA+TGG | - | chr1.2:79093538-79093557 | MS.gene86930:CDS | 35.0% | |
| ATCTCTTGTAACAGTCAACT+GGG | - | chr1.2:79092062-79092081 | MS.gene86930:intron | 35.0% | |
| CAACAAAATGTACACTGATG+CGG | + | chr1.2:79092301-79092320 | None:intergenic | 35.0% | |
| CACTATTCTTGTTCCTTTGA+TGG | - | chr1.2:79089960-79089979 | MS.gene86930:intron | 35.0% | |
| CATCAAAGGAACAAGAATAG+TGG | + | chr1.2:79089962-79089981 | None:intergenic | 35.0% | |
| CCACAATGTCATATTGATCA+TGG | + | chr1.2:79091880-79091899 | None:intergenic | 35.0% | |
| CCATGATCAATATGACATTG+TGG | - | chr1.2:79091877-79091896 | MS.gene86930:CDS | 35.0% | |
| CCTAATTACTTACTGTATCC+GGG | - | chr1.2:79092779-79092798 | MS.gene86930:intron | 35.0% | |
| GCCTAATTACTTACTGTATC+CGG | - | chr1.2:79092778-79092797 | MS.gene86930:intron | 35.0% | |
| TACAGATCAATGTTCATCGT+TGG | - | chr1.2:79093178-79093197 | MS.gene86930:CDS | 35.0% | |
| TAGTCAAAATGCAGGATTGT+TGG | - | chr1.2:79092453-79092472 | MS.gene86930:intron | 35.0% | |
| TGCAAAGAGAACACAATACA+CGG | + | chr1.2:79092865-79092884 | None:intergenic | 35.0% | |
| TGTATCCGGGTTTATAAATC+AGG | - | chr1.2:79092792-79092811 | MS.gene86930:CDS | 35.0% | |
| TGTGTTCTCTTTGCATATGT+CGG | - | chr1.2:79092870-79092889 | MS.gene86930:CDS | 35.0% | |
| TTATTGCATTTGCAGCTGAA+GGG | - | chr1.2:79089881-79089900 | MS.gene86930:intron | 35.0% | |
| TTCTCTTGTTGCAATTGTAG+AGG | - | chr1.2:79091738-79091757 | MS.gene86930:intron | 35.0% | |
| TTTACTGTGATTCCTGTAGT+TGG | - | chr1.2:79090786-79090805 | MS.gene86930:CDS | 35.0% | |
| TTTATTGCATTTGCAGCTGA+AGG | - | chr1.2:79089880-79089899 | MS.gene86930:intron | 35.0% | |
| ! | TTACTGTTGATTGCTGTGTT+AGG | - | chr1.2:79089749-79089768 | MS.gene86930:CDS | 35.0% |
| !! | GATTCTGGGGAATTTTTGTA+AGG | - | chr1.2:79090464-79090483 | MS.gene86930:intron | 35.0% |
| !! | TCTGGCTATTTCTAAGTAGA+AGG | - | chr1.2:79091976-79091995 | MS.gene86930:CDS | 35.0% |
| !! | TCTTATTCCAGCTATTTCTG+TGG | - | chr1.2:79090188-79090207 | MS.gene86930:intron | 35.0% |
| !!! | ATGTTTTGAGGGAAAACTGT+AGG | - | chr1.2:79090053-79090072 | MS.gene86930:CDS | 35.0% |
| !!! | GGATCGGTGTTATACATTTT+CGG | - | chr1.2:79091810-79091829 | MS.gene86930:intron | 35.0% |
| AAAGATGCTCCTATAACCAC+TGG | + | chr1.2:79090162-79090181 | None:intergenic | 40.0% | |
| ACAGTAAGTTGTTCCTTGAC+AGG | + | chr1.2:79089736-79089755 | None:intergenic | 40.0% | |
| AGATATTCCAACGAAGCCAT+AGG | + | chr1.2:79092656-79092675 | None:intergenic | 40.0% | |
| AGCTTTCTGTACATCTATGC+AGG | - | chr1.2:79091641-79091660 | MS.gene86930:intron | 40.0% | |
| AGTCACGATTGGAATTGCAT+GGG | - | chr1.2:79091276-79091295 | MS.gene86930:intron | 40.0% | |
| ATCCATGAGAGCTATTCAAG+GGG | - | chr1.2:79090396-79090415 | MS.gene86930:CDS | 40.0% | |
| ATGACCAGAATAACCAATGC+AGG | + | chr1.2:79090835-79090854 | None:intergenic | 40.0% | |
| ATTCTTGTTCCTTTGATGGG+TGG | - | chr1.2:79089964-79089983 | MS.gene86930:intron | 40.0% | |
| CAACTGAATTGAGTACTCAG+TGG | + | chr1.2:79091346-79091365 | None:intergenic | 40.0% | |
| CAATACACGGCTGCTATTAT+TGG | + | chr1.2:79092852-79092871 | None:intergenic | 40.0% | |
| CAATCCATGAGAGCTATTCA+AGG | - | chr1.2:79090394-79090413 | MS.gene86930:CDS | 40.0% | |
| CAGATAGTGTGAGATATTCG+AGG | + | chr1.2:79093243-79093262 | None:intergenic | 40.0% | |
| CCCGGATACAGTAAGTAATT+AGG | + | chr1.2:79092782-79092801 | None:intergenic | 40.0% | |
| CTCGAATATCTCACACTATC+TGG | - | chr1.2:79093241-79093260 | MS.gene86930:intron | 40.0% | |
| CTTTGTGATAGGGTTTCCAA+GGG | - | chr1.2:79090666-79090685 | MS.gene86930:intron | 40.0% | |
| GACAATAGGTAGTGAGAAGA+GGG | + | chr1.2:79092324-79092343 | None:intergenic | 40.0% | |
| GAGAGAAATGTGTTTACCCT+TGG | + | chr1.2:79090685-79090704 | None:intergenic | 40.0% | |
| GAGTTCCGTATCCATTTCAA+TGG | - | chr1.2:79091668-79091687 | MS.gene86930:intron | 40.0% | |
| GTTCCGTATCCATTTCAATG+GGG | - | chr1.2:79091670-79091689 | MS.gene86930:intron | 40.0% | |
| TAAAGTAACATACCTGGGAG+AGG | + | chr1.2:79090858-79090877 | None:intergenic | 40.0% | |
| TAGGCCAGTTAGAGTTACAA+GGG | + | chr1.2:79090641-79090660 | None:intergenic | 40.0% | |
| TAGTCACGATTGGAATTGCA+TGG | - | chr1.2:79091275-79091294 | MS.gene86930:intron | 40.0% | |
| TATCTCACACTATCTGGACA+TGG | - | chr1.2:79093247-79093266 | MS.gene86930:intron | 40.0% | |
| TCGTGACTATGACTGCAAAT+CGG | + | chr1.2:79091264-79091283 | None:intergenic | 40.0% | |
| TCTTTGTGATAGGGTTTCCA+AGG | - | chr1.2:79090665-79090684 | MS.gene86930:intron | 40.0% | |
| TGACAATAGGTAGTGAGAAG+AGG | + | chr1.2:79092325-79092344 | None:intergenic | 40.0% | |
| TGTATTCCTTAATCCTCGTC+AGG | - | chr1.2:79090230-79090249 | MS.gene86930:intron | 40.0% | |
| TTCATCGCTGCATCAAGATT+TGG | - | chr1.2:79092088-79092107 | MS.gene86930:intron | 40.0% | |
| TTCCGTATCCATTTCAATGG+GGG | - | chr1.2:79091671-79091690 | MS.gene86930:intron | 40.0% | |
| TTGGCAGATTGTGTTGAGAT+TGG | - | chr1.2:79090805-79090824 | MS.gene86930:intron | 40.0% | |
| TTTGCAGTCATAGTCACGAT+TGG | - | chr1.2:79091265-79091284 | MS.gene86930:intron | 40.0% | |
| ! | CAGCTGAAGGGATTTTTCTT+GGG | - | chr1.2:79089893-79089912 | MS.gene86930:intron | 40.0% |
| ! | TTTTCAACCTCATCCTGTCA+AGG | - | chr1.2:79089720-79089739 | MS.gene86930:CDS | 40.0% |
| !! | TCTTCCTGCATTGGTTATTC+TGG | - | chr1.2:79090828-79090847 | MS.gene86930:intron | 40.0% |
| !! | TTTTGAGGGAAAACTGTAGG+TGG | - | chr1.2:79090056-79090075 | MS.gene86930:CDS | 40.0% |
| !!! | GTTGGCTTTTCTCTCTTCAT+AGG | - | chr1.2:79093196-79093215 | MS.gene86930:intron | 40.0% |
| ACATGCCACAAAGAAGTCAG+AGG | + | chr1.2:79091587-79091606 | None:intergenic | 45.0% | |
| ACCCTATCACAAAGAGTCCT+AGG | + | chr1.2:79090660-79090679 | None:intergenic | 45.0% | |
| ACGGCTGCTATTATTGGCAA+TGG | + | chr1.2:79092846-79092865 | None:intergenic | 45.0% | |
| ACTAGGCTTCCAGTGGTTAT+AGG | - | chr1.2:79090150-79090169 | MS.gene86930:intron | 45.0% | |
| AGGCCAGTTAGAGTTACAAG+GGG | + | chr1.2:79090640-79090659 | None:intergenic | 45.0% | |
| AGTTCTCGCAGACCAACATA+AGG | + | chr1.2:79092950-79092969 | None:intergenic | 45.0% | |
| AGTTGTTCCTTGACAGGATG+AGG | + | chr1.2:79089730-79089749 | None:intergenic | 45.0% | |
| ATCGCTGCATCAAGATTTGG+CGG | - | chr1.2:79092091-79092110 | MS.gene86930:intron | 45.0% | |
| CAAAATGTACACTGATGCGG+TGG | + | chr1.2:79092298-79092317 | None:intergenic | 45.0% | |
| CAACACAATCTGCCAACTAC+AGG | + | chr1.2:79090801-79090820 | None:intergenic | 45.0% | |
| CGGCAGTAATTAACCCAGAT+CGG | + | chr1.2:79091378-79091397 | None:intergenic | 45.0% | |
| CTAGGCCAGTTAGAGTTACA+AGG | + | chr1.2:79090642-79090661 | None:intergenic | 45.0% | |
| CTCCCCCATTGAAATGGATA+CGG | + | chr1.2:79091676-79091695 | None:intergenic | 45.0% | |
| CTCTGCCTAGTTTGATGCTT+TGG | + | chr1.2:79091512-79091531 | None:intergenic | 45.0% | |
| GACACTGGTGGGAAAAATTC+AGG | - | chr1.2:79093500-79093519 | MS.gene86930:CDS | 45.0% | |
| GAGAATGCCACAGAAATAGC+TGG | + | chr1.2:79090198-79090217 | None:intergenic | 45.0% | |
| GCCTAGGACTCTTTGTGATA+GGG | - | chr1.2:79090656-79090675 | MS.gene86930:intron | 45.0% | |
| GGAATGTACTGCAACGACAT+TGG | + | chr1.2:79091214-79091233 | None:intergenic | 45.0% | |
| GTCACGATTGGAATTGCATG+GGG | - | chr1.2:79091277-79091296 | MS.gene86930:intron | 45.0% | |
| GTTCATTCCTATGGCTTCGT+TGG | - | chr1.2:79092646-79092665 | MS.gene86930:intron | 45.0% | |
| GTTCCCCTTGTAACTCTAAC+TGG | - | chr1.2:79090634-79090653 | MS.gene86930:intron | 45.0% | |
| TCAACACTCTGTTGCAGACA+TGG | - | chr1.2:79090121-79090140 | MS.gene86930:CDS | 45.0% | |
| TTAACCCAGATCGGTCAGTA+CGG | + | chr1.2:79091369-79091388 | None:intergenic | 45.0% | |
| TTAGGGTATAGGCACTCTTC+TGG | - | chr1.2:79092245-79092264 | MS.gene86930:intron | 45.0% | |
| TTGCACCTCTGACTTCTTTG+TGG | - | chr1.2:79091579-79091598 | MS.gene86930:CDS | 45.0% | |
| ! | ACTCTTCTGGATGCCTTGTT+TGG | - | chr1.2:79092258-79092277 | MS.gene86930:intron | 45.0% |
| ! | AGACTAACTTGTGTGGGGAT+CGG | - | chr1.2:79091794-79091813 | MS.gene86930:intron | 45.0% |
| ! | AGGCTCCAAAGCATCAAACT+AGG | - | chr1.2:79091504-79091523 | MS.gene86930:intron | 45.0% |
| ! | ATGGGTTACTTACGCCATGA+AGG | + | chr1.2:79089781-79089800 | None:intergenic | 45.0% |
| ! | CTTGTAACTCTAACTGGCCT+AGG | - | chr1.2:79090640-79090659 | MS.gene86930:intron | 45.0% |
| ! | GCAGCTGAAGGGATTTTTCT+TGG | - | chr1.2:79089892-79089911 | MS.gene86930:intron | 45.0% |
| !! | TGAGATTGGTCTTCCTGCAT+TGG | - | chr1.2:79090819-79090838 | MS.gene86930:intron | 45.0% |
| !!! | CAGACACTGCTTTTTGTTGC+TGG | - | chr1.2:79090096-79090115 | MS.gene86930:CDS | 45.0% |
| !!! | TCATTTTTTATATATTTTTA+TGG | - | chr1.2:79090703-79090722 | MS.gene86930:intron | 5.0% |
| ACATTGCCACCACCCATCAA+AGG | + | chr1.2:79089976-79089995 | None:intergenic | 50.0% | |
| ACTCTGTTGCAGACATGGCT+TGG | - | chr1.2:79090126-79090145 | MS.gene86930:intron | 50.0% | |
| AGGTGGATCCAGTATGAGCA+GGG | + | chr1.2:79093273-79093292 | None:intergenic | 50.0% | |
| CAAGCTACCAAGACTGACCA+TGG | + | chr1.2:79091403-79091422 | None:intergenic | 50.0% | |
| GACAGACCTGACGAGGATTA+AGG | + | chr1.2:79090239-79090258 | None:intergenic | 50.0% | |
| GGCCTAGGACTCTTTGTGAT+AGG | - | chr1.2:79090655-79090674 | MS.gene86930:intron | 50.0% | |
| GGGAGCCCTACTTTCAATGT+TGG | - | chr1.2:79091691-79091710 | MS.gene86930:intron | 50.0% | |
| GGTTAATTACTGCCGCTCCA+TGG | - | chr1.2:79091383-79091402 | MS.gene86930:intron | 50.0% | |
| GTGTTAGGAGCTCACCTTCA+TGG | - | chr1.2:79089764-79089783 | MS.gene86930:CDS | 50.0% | |
| TACCAAGACTGACCATGGAG+CGG | + | chr1.2:79091398-79091417 | None:intergenic | 50.0% | |
| TATTCTGGTCATCCTCTCCC+AGG | - | chr1.2:79090843-79090862 | MS.gene86930:intron | 50.0% | |
| TGCCCCTTGAATAGCTCTCA+TGG | + | chr1.2:79090401-79090420 | None:intergenic | 50.0% | |
| TGCTCATACTGGATCCACCT+CGG | - | chr1.2:79093273-79093292 | MS.gene86930:intron | 50.0% | |
| TGTTGGGTCTAACACGCGTT+GGG | - | chr1.2:79092470-79092489 | MS.gene86930:intron | 50.0% | |
| TTACACAGACAGACCTGACG+AGG | + | chr1.2:79090246-79090265 | None:intergenic | 50.0% | |
| TTGTTGGGTCTAACACGCGT+TGG | - | chr1.2:79092469-79092488 | MS.gene86930:intron | 50.0% | |
| ! | CATGGTCAGTCTTGGTAGCT+TGG | - | chr1.2:79091401-79091420 | MS.gene86930:intron | 50.0% |
| ! | CTTGTTCCTTTGATGGGTGG+TGG | - | chr1.2:79089967-79089986 | MS.gene86930:intron | 50.0% |
| ! | TGCAGACATGGCTTGGAACT+AGG | - | chr1.2:79090133-79090152 | MS.gene86930:intron | 50.0% |
| !!! | GCTGAAATTTTGACTGCGGC+TGG | - | chr1.2:79091304-79091323 | MS.gene86930:intron | 50.0% |
| ACACCGCGGCTAAGTACAGA+AGG | + | chr1.2:79092133-79092152 | None:intergenic | 55.0% | |
| ACCAGTGTCTCCCACTGTCA+CGG | + | chr1.2:79093489-79093508 | None:intergenic | 55.0% | |
| ATGGCAGCTGGTGAAAGTGG+TGG | - | chr1.2:79089676-79089695 | MS.gene86930:CDS | 55.0% | |
| CCACCTTCTGTACTTAGCCG+CGG | - | chr1.2:79092127-79092146 | MS.gene86930:intron | 55.0% | |
| CCTCAACTCACCGTGACAGT+GGG | - | chr1.2:79093476-79093495 | MS.gene86930:intron | 55.0% | |
| CTGTGATGAGCAGCTTCAGC+TGG | - | chr1.2:79093121-79093140 | MS.gene86930:CDS | 55.0% | |
| GAGGTGGATCCAGTATGAGC+AGG | + | chr1.2:79093274-79093293 | None:intergenic | 55.0% | |
| GCTTGGAACTAGGCTTCCAG+TGG | - | chr1.2:79090143-79090162 | MS.gene86930:intron | 55.0% | |
| GGCGTGTTCACGACTCATAG+TGG | + | chr1.2:79093458-79093477 | None:intergenic | 55.0% | |
| GTAGGGCTCCCCCATTGAAA+TGG | + | chr1.2:79091682-79091701 | None:intergenic | 55.0% | |
| TCCAGTTGCTGCGCCAAACA+AGG | + | chr1.2:79092274-79092293 | None:intergenic | 55.0% | |
| TCTGTACTTAGCCGCGGTGT+TGG | - | chr1.2:79092133-79092152 | MS.gene86930:intron | 55.0% | |
| TGACAGTGGGAGACACTGGT+GGG | - | chr1.2:79093489-79093508 | MS.gene86930:CDS | 55.0% | |
| TGAGCAGCTTCAGCTGGACT+TGG | - | chr1.2:79093127-79093146 | MS.gene86930:CDS | 55.0% | |
| ! | ACAAGGGGAACAGCACTGAG+AGG | + | chr1.2:79090625-79090644 | None:intergenic | 55.0% |
| ! | AGTTGCCGTACTGACCGATC+TGG | - | chr1.2:79091361-79091380 | MS.gene86930:intron | 55.0% |
| ! | CAAGGGGAACAGCACTGAGA+GGG | + | chr1.2:79090624-79090643 | None:intergenic | 55.0% |
| ! | GTTGCCGTACTGACCGATCT+GGG | - | chr1.2:79091362-79091381 | MS.gene86930:intron | 55.0% |
| ACCGTGACAGTGGGAGACAC+TGG | - | chr1.2:79093485-79093504 | MS.gene86930:intron | 60.0% | |
| CCCACTGTCACGGTGAGTTG+AGG | + | chr1.2:79093479-79093498 | None:intergenic | 60.0% | |
| CCGCGGCTAAGTACAGAAGG+TGG | + | chr1.2:79092130-79092149 | None:intergenic | 60.0% | |
| GCAGCTGGTGAAAGTGGTGG+TGG | - | chr1.2:79089679-79089698 | MS.gene86930:CDS | 60.0% | |
| GCCTCAACTCACCGTGACAG+TGG | - | chr1.2:79093475-79093494 | MS.gene86930:intron | 60.0% | |
| GGACATGGCCCTGCTCATAC+TGG | - | chr1.2:79093262-79093281 | MS.gene86930:intron | 60.0% | |
| GTGACAGTGGGAGACACTGG+TGG | - | chr1.2:79093488-79093507 | MS.gene86930:intron | 60.0% | |
| TGCCGCTCCATGGTCAGTCT+TGG | - | chr1.2:79091393-79091412 | MS.gene86930:intron | 60.0% | |
| !! | GCCTTGTTTGGCGCAGCAAC+TGG | - | chr1.2:79092270-79092289 | MS.gene86930:intron | 60.0% |
| !! | GCTGGTGAAAGTGGTGGTGG+TGG | - | chr1.2:79089682-79089701 | MS.gene86930:CDS | 60.0% |
| !! | GGTGAAAGTGGTGGTGGTGG+TGG | - | chr1.2:79089685-79089704 | MS.gene86930:CDS | 60.0% |
| !! | TACTTAGCCGCGGTGTTGGC+TGG | - | chr1.2:79092137-79092156 | MS.gene86930:intron | 60.0% |
| GTACCAGCCAGCCAACACCG+CGG | + | chr1.2:79092147-79092166 | None:intergenic | 65.0% | |
| !! | TAGCCGCGGTGTTGGCTGGC+TGG | - | chr1.2:79092141-79092160 | MS.gene86930:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 79089676 | 79093600 | 79089676 | ID=MS.gene86930 |
| chr1.2 | mRNA | 79089676 | 79093600 | 79089676 | ID=MS.gene86930.t1;Parent=MS.gene86930 |
| chr1.2 | exon | 79093489 | 79093600 | 79093489 | ID=MS.gene86930.t1.exon1;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79093489 | 79093600 | 79093489 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79093283 | 79093380 | 79093283 | ID=MS.gene86930.t1.exon2;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79093283 | 79093380 | 79093283 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79093025 | 79093201 | 79093025 | ID=MS.gene86930.t1.exon3;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79093025 | 79093201 | 79093025 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79092791 | 79092891 | 79092791 | ID=MS.gene86930.t1.exon4;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79092791 | 79092891 | 79092791 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79092589 | 79092664 | 79092589 | ID=MS.gene86930.t1.exon5;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79092589 | 79092664 | 79092589 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79092412 | 79092471 | 79092412 | ID=MS.gene86930.t1.exon6;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79092412 | 79092471 | 79092412 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79091872 | 79092050 | 79091872 | ID=MS.gene86930.t1.exon7;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79091872 | 79092050 | 79091872 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79091517 | 79091613 | 79091517 | ID=MS.gene86930.t1.exon8;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79091517 | 79091613 | 79091517 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79091114 | 79091200 | 79091114 | ID=MS.gene86930.t1.exon9;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79091114 | 79091200 | 79091114 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79090969 | 79091027 | 79090969 | ID=MS.gene86930.t1.exon10;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79090969 | 79091027 | 79090969 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79090729 | 79090820 | 79090729 | ID=MS.gene86930.t1.exon11;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79090729 | 79090820 | 79090729 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79090385 | 79090462 | 79090385 | ID=MS.gene86930.t1.exon12;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79090385 | 79090462 | 79090385 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79089982 | 79090142 | 79089982 | ID=MS.gene86930.t1.exon13;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79089982 | 79090142 | 79089982 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| chr1.2 | exon | 79089676 | 79089894 | 79089676 | ID=MS.gene86930.t1.exon14;Parent=MS.gene86930.t1 |
| chr1.2 | CDS | 79089676 | 79089894 | 79089676 | ID=cds.MS.gene86930.t1;Parent=MS.gene86930.t1 |
| Gene Sequence |
| Protein sequence |
