Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033221.t1 | RHN63538.1 | 100 | 532 | 0 | 0 | 1 | 532 | 1 | 532 | 1.70E-305 | 1057.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033221.t1 | Q27GI3 | 85.5 | 532 | 77 | 0 | 1 | 532 | 1 | 532 | 1.8e-271 | 936.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033221.t1 | A0A396IFG0 | 100.0 | 532 | 0 | 0 | 1 | 532 | 1 | 532 | 1.2e-305 | 1057.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033221 | MS.gene53408 | PPI |
| MS.gene033221 | MS.gene83067 | PPI |
| MS.gene033221 | MS.gene70718 | PPI |
| MS.gene015655 | MS.gene033221 | PPI |
| MS.gene033221 | MS.gene026529 | PPI |
| MS.gene033221 | MS.gene052675 | PPI |
| MS.gene033221 | MS.gene71606 | PPI |
| MS.gene033221 | MS.gene023585 | PPI |
| MS.gene033221 | MS.gene012865 | PPI |
| MS.gene033221 | MS.gene044204 | PPI |
| MS.gene033221 | MS.gene020517 | PPI |
| MS.gene033221 | MS.gene59470 | PPI |
| MS.gene033221 | MS.gene052677 | PPI |
| MS.gene033221 | MS.gene27811 | PPI |
| MS.gene033221 | MS.gene015069 | PPI |
| MS.gene033221 | MS.gene25185 | PPI |
| MS.gene033221 | MS.gene68064 | PPI |
| MS.gene033221 | MS.gene86930 | PPI |
| MS.gene033221 | MS.gene058853 | PPI |
| MS.gene033221 | MS.gene64768 | PPI |
| MS.gene033221 | MS.gene32869 | PPI |
| MS.gene033221 | MS.gene010624 | PPI |
| MS.gene033221 | MS.gene27812 | PPI |
| MS.gene37474 | MS.gene033221 | PPI |
| MS.gene033221 | MS.gene62686 | PPI |
| MS.gene033221 | MS.gene96701 | PPI |
| MS.gene033221 | MS.gene98973 | PPI |
| MS.gene033221 | MS.gene25800 | PPI |
| MS.gene033221 | MS.gene91317 | PPI |
| MS.gene033221 | MS.gene052674 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033221.t1 | MTR_4g106750 | 99.436 | 532 | 3 | 0 | 1 | 532 | 1 | 532 | 0.0 | 1067 |
| MS.gene033221.t1 | MTR_3g078270 | 90.789 | 532 | 49 | 0 | 1 | 532 | 1 | 532 | 0.0 | 991 |
| MS.gene033221.t1 | MTR_4g106750 | 99.379 | 483 | 3 | 0 | 50 | 532 | 1 | 483 | 0.0 | 962 |
| MS.gene033221.t1 | MTR_8g063220 | 81.614 | 533 | 97 | 1 | 1 | 532 | 1 | 533 | 0.0 | 897 |
| MS.gene033221.t1 | MTR_5g035180 | 77.419 | 527 | 118 | 1 | 7 | 532 | 12 | 538 | 0.0 | 849 |
| MS.gene033221.t1 | MTR_4g106750 | 99.189 | 370 | 3 | 0 | 163 | 532 | 11 | 380 | 0.0 | 740 |
| MS.gene033221.t1 | MTR_3g103230 | 59.238 | 525 | 211 | 1 | 8 | 532 | 33 | 554 | 0.0 | 662 |
| MS.gene033221.t1 | MTR_1g106085 | 59.770 | 522 | 207 | 2 | 10 | 531 | 8 | 526 | 0.0 | 637 |
| MS.gene033221.t1 | MTR_8g086520 | 59.073 | 518 | 210 | 1 | 13 | 530 | 7 | 522 | 0.0 | 627 |
| MS.gene033221.t1 | MTR_5g022110 | 57.692 | 520 | 217 | 1 | 13 | 532 | 31 | 547 | 0.0 | 626 |
| MS.gene033221.t1 | MTR_2g016460 | 58.126 | 523 | 216 | 2 | 8 | 530 | 3 | 522 | 0.0 | 620 |
| MS.gene033221.t1 | MTR_3g080390 | 58.252 | 515 | 212 | 2 | 17 | 530 | 6 | 518 | 0.0 | 602 |
| MS.gene033221.t1 | MTR_8g086520 | 58.705 | 448 | 185 | 0 | 13 | 460 | 7 | 454 | 0.0 | 537 |
| MS.gene033221.t1 | MTR_1g021120 | 52.816 | 515 | 237 | 3 | 19 | 531 | 36 | 546 | 0.0 | 531 |
| MS.gene033221.t1 | MTR_8g086520 | 59.158 | 404 | 163 | 1 | 127 | 530 | 5 | 406 | 2.17e-173 | 495 |
| MS.gene033221.t1 | MTR_8g086520 | 58.586 | 396 | 164 | 0 | 13 | 408 | 7 | 402 | 1.47e-165 | 475 |
| MS.gene033221.t1 | MTR_8g068550 | 34.955 | 555 | 316 | 7 | 10 | 529 | 211 | 755 | 4.64e-108 | 340 |
| MS.gene033221.t1 | MTR_5g032020 | 36.100 | 518 | 293 | 4 | 40 | 525 | 182 | 693 | 1.47e-103 | 326 |
| MS.gene033221.t1 | MTR_2g084895 | 34.933 | 521 | 299 | 5 | 43 | 529 | 164 | 678 | 1.48e-94 | 302 |
| MS.gene033221.t1 | MTR_4g055290 | 34.549 | 521 | 296 | 8 | 43 | 529 | 171 | 680 | 4.43e-90 | 291 |
| MS.gene033221.t1 | MTR_2g103510 | 32.308 | 520 | 314 | 6 | 26 | 529 | 94 | 591 | 1.15e-89 | 287 |
| MS.gene033221.t1 | MTR_8g086535 | 65.347 | 101 | 35 | 0 | 308 | 408 | 18 | 118 | 5.01e-36 | 130 |
| MS.gene033221.t1 | MTR_1g079900 | 40.323 | 124 | 57 | 4 | 420 | 530 | 59 | 178 | 2.97e-20 | 89.4 |
| MS.gene033221.t1 | MTR_3g087320 | 53.731 | 67 | 17 | 1 | 461 | 527 | 72 | 124 | 6.00e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene033221.t1 | AT5G62890 | 85.526 | 532 | 77 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| MS.gene033221.t1 | AT5G62890 | 85.526 | 532 | 77 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| MS.gene033221.t1 | AT5G62890 | 85.526 | 532 | 77 | 0 | 1 | 532 | 1 | 532 | 0.0 | 951 |
| MS.gene033221.t1 | AT5G49990 | 80.798 | 526 | 100 | 1 | 8 | 532 | 3 | 528 | 0.0 | 874 |
| MS.gene033221.t1 | AT5G49990 | 80.798 | 526 | 100 | 1 | 8 | 532 | 3 | 528 | 0.0 | 874 |
| MS.gene033221.t1 | AT5G49990 | 80.798 | 526 | 100 | 1 | 8 | 532 | 3 | 528 | 0.0 | 874 |
| MS.gene033221.t1 | AT5G49990 | 80.798 | 526 | 100 | 1 | 8 | 532 | 3 | 528 | 0.0 | 874 |
| MS.gene033221.t1 | AT1G60030 | 76.091 | 527 | 126 | 0 | 6 | 532 | 12 | 538 | 0.0 | 847 |
| MS.gene033221.t1 | AT5G62890 | 85.435 | 460 | 67 | 0 | 1 | 460 | 1 | 460 | 0.0 | 814 |
| MS.gene033221.t1 | AT1G10540 | 68.216 | 538 | 164 | 3 | 1 | 531 | 1 | 538 | 0.0 | 777 |
| MS.gene033221.t1 | AT1G49960 | 60.496 | 524 | 207 | 0 | 8 | 531 | 2 | 525 | 0.0 | 645 |
| MS.gene033221.t1 | AT2G34190 | 59.846 | 518 | 206 | 1 | 13 | 530 | 7 | 522 | 0.0 | 630 |
| MS.gene033221.t1 | AT1G65550 | 54.064 | 529 | 234 | 2 | 10 | 531 | 14 | 540 | 0.0 | 607 |
| MS.gene033221.t1 | AT2G05760 | 55.922 | 515 | 224 | 2 | 17 | 530 | 6 | 518 | 0.0 | 590 |
| MS.gene033221.t1 | AT1G10540 | 67.268 | 388 | 120 | 3 | 1 | 381 | 1 | 388 | 0.0 | 542 |
| MS.gene033221.t1 | AT2G26510 | 49.516 | 517 | 254 | 3 | 18 | 531 | 36 | 548 | 3.94e-174 | 503 |
| MS.gene033221.t1 | AT5G25420 | 48.533 | 443 | 158 | 5 | 10 | 452 | 26 | 398 | 3.96e-141 | 414 |
| MS.gene033221.t1 | AT2G26510 | 50.954 | 367 | 174 | 2 | 18 | 381 | 36 | 399 | 8.00e-122 | 364 |
| MS.gene033221.t1 | AT2G26510 | 50.282 | 354 | 170 | 2 | 18 | 368 | 36 | 386 | 2.40e-115 | 348 |
| MS.gene033221.t1 | AT4G38050 | 35.249 | 522 | 300 | 5 | 40 | 529 | 189 | 704 | 1.85e-94 | 303 |
| MS.gene033221.t1 | AT2G27810 | 35.509 | 521 | 297 | 5 | 43 | 529 | 186 | 701 | 1.83e-93 | 300 |
| MS.gene033221.t1 | AT2G27810 | 34.312 | 545 | 295 | 7 | 43 | 529 | 186 | 725 | 4.03e-89 | 289 |
| MS.gene033221.t1 | AT2G27810 | 39.259 | 405 | 227 | 3 | 43 | 429 | 186 | 589 | 2.92e-79 | 259 |
| MS.gene033221.t1 | AT2G27810 | 39.665 | 358 | 197 | 3 | 43 | 382 | 186 | 542 | 1.59e-69 | 233 |
Find 149 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTCTTGTGTCAGTCTTAA+AGG | 0.116755 | 8.3:+16863607 | None:intergenic |
| TCAACCCTTCAAATAGTATT+AGG | 0.142814 | 8.3:-16867816 | MS.gene033221:CDS |
| CTGTATGAGTTAGGCTTTCC+TGG | 0.181335 | 8.3:-16867444 | MS.gene033221:CDS |
| TTGGTATCTCTTGTTGGTTT+TGG | 0.200317 | 8.3:-16867468 | MS.gene033221:CDS |
| ATTAGGCTTCTCCATCTTCT+TGG | 0.222669 | 8.3:-16864040 | MS.gene033221:CDS |
| CAATCAAAAGCTTTCGTTGC+TGG | 0.262369 | 8.3:-16863722 | MS.gene033221:CDS |
| AACGAGTACACAGCAATAAA+TGG | 0.288001 | 8.3:-16863994 | MS.gene033221:CDS |
| GTACCCCATGTGCTCCATTC+AGG | 0.304871 | 8.3:-16867126 | MS.gene033221:CDS |
| TGTACGTTTAACGTGGTTAT+AGG | 0.312485 | 8.3:+16867020 | None:intergenic |
| GCAGCTGAGGCCATACTTCT+TGG | 0.314540 | 8.3:-16868565 | MS.gene033221:intron |
| CAACCCTTCAAATAGTATTA+GGG | 0.316874 | 8.3:-16867815 | MS.gene033221:CDS |
| TTTAGGACCAAGTTTGTATT+AGG | 0.317423 | 8.3:-16864057 | MS.gene033221:CDS |
| TATTAGGGTTTAGCGGTCTT+TGG | 0.320950 | 8.3:-16867800 | MS.gene033221:CDS |
| TAGTGAAAATGCTGGTCTTT+TGG | 0.321952 | 8.3:-16864777 | MS.gene033221:CDS |
| TTAGGCTTCTCCATCTTCTT+GGG | 0.360098 | 8.3:-16864039 | MS.gene033221:CDS |
| GTTCCTTTGGTATCTCTTGT+TGG | 0.360812 | 8.3:-16867474 | MS.gene033221:CDS |
| TACACAGCAATAAATGGTTT+TGG | 0.364347 | 8.3:-16863988 | MS.gene033221:CDS |
| ACATTAGTGCAAACGTTGTT+TGG | 0.366705 | 8.3:-16868246 | MS.gene033221:CDS |
| CCAACATTATCTTGTGATGC+TGG | 0.375334 | 8.3:-16868539 | MS.gene033221:CDS |
| ATTTATTTAGATTGAAAGGC+AGG | 0.381735 | 8.3:+16863570 | None:intergenic |
| CATCTTGCTCCGGTGTGAAC+TGG | 0.385883 | 8.3:+16863964 | None:intergenic |
| TTACATTGCCACCTCCCATC+TGG | 0.391083 | 8.3:+16868482 | None:intergenic |
| ATAAGAAAGAATCTGCTATT+CGG | 0.396790 | 8.3:-16863667 | MS.gene033221:CDS |
| TCCACTCTCAGCAGTTCCTT+TGG | 0.398718 | 8.3:-16867487 | MS.gene033221:CDS |
| TGGAGTTGTTGCATATTTCT+TGG | 0.399662 | 8.3:-16863702 | MS.gene033221:CDS |
| GGTTGTGGTTCATCTGCTTT+CGG | 0.406675 | 8.3:+16873476 | None:intergenic |
| TTCTCATACAATACCTCTAT+AGG | 0.410181 | 8.3:+16868129 | None:intergenic |
| TCCATTCTTAGTCGGGGTAT+TGG | 0.410958 | 8.3:-16865080 | MS.gene033221:CDS |
| AGCCGATTGCCCGCAGTAAT+CGG | 0.411159 | 8.3:-16868222 | MS.gene033221:CDS |
| GTTGCTAAGTGTGTAGAGAT+TGG | 0.411415 | 8.3:-16867329 | MS.gene033221:CDS |
| TTATCAGGATTGTTTGGAAC+CGG | 0.413477 | 8.3:-16864917 | MS.gene033221:CDS |
| ACCATGGAGCAGCATCTATT+AGG | 0.414783 | 8.3:+16866965 | None:intergenic |
| GGTGTCGGCATTCTGTTATC+AGG | 0.417532 | 8.3:-16864932 | MS.gene033221:CDS |
| ACCACCATCCATTCTTAGTC+GGG | 0.419736 | 8.3:-16865087 | MS.gene033221:CDS |
| ATGTTGGAAACCAAGAAGTA+TGG | 0.422658 | 8.3:+16868555 | None:intergenic |
| ATTCTGTTATCAGGATTGTT+TGG | 0.423854 | 8.3:-16864923 | MS.gene033221:CDS |
| GGTTCATCTGCTTTCGGCGC+CGG | 0.425593 | 8.3:+16873482 | None:intergenic |
| AGCGACAATTAGAGCGCCTT+GGG | 0.426723 | 8.3:+16867839 | None:intergenic |
| TACTTCTCTTGTTCCCCAGA+TGG | 0.427384 | 8.3:-16868497 | MS.gene033221:CDS |
| CAGCCACAAAGAGTAGTGTT+TGG | 0.429045 | 8.3:+16868277 | None:intergenic |
| TATCCAAACACTACTCTTTG+TGG | 0.431001 | 8.3:-16868280 | MS.gene033221:CDS |
| TAAACCCTAATACTATTTGA+AGG | 0.432274 | 8.3:+16867811 | None:intergenic |
| GAAGGGGCACCCCATTGAAA+TGG | 0.438034 | 8.3:+16866128 | None:intergenic |
| GAGTTCCGTATCCATTTCAA+TGG | 0.438469 | 8.3:-16866139 | MS.gene033221:CDS |
| GGATTGTTTGGAACCGGCAT+TGG | 0.444794 | 8.3:-16864911 | MS.gene033221:CDS |
| ACCAATACCCCGACTAAGAA+TGG | 0.448207 | 8.3:+16865079 | None:intergenic |
| TGTATGAGTTAGGCTTTCCT+GGG | 0.448491 | 8.3:-16867443 | MS.gene033221:CDS |
| TGCTTGTTCTTTGCTTATGT+CGG | 0.453106 | 8.3:-16864232 | MS.gene033221:intron |
| TAGTCGGGGTATTGGTTGGC+AGG | 0.453343 | 8.3:-16865072 | MS.gene033221:intron |
| TCCTTCGGTGGATGCGGTTG+TGG | 0.455133 | 8.3:+16873461 | None:intergenic |
| ACCTGCCGCACTGATAGTTC+AGG | 0.456574 | 8.3:-16866988 | MS.gene033221:CDS |
| CTTGTTCCCCAGATGGGAGG+TGG | 0.462178 | 8.3:-16868490 | MS.gene033221:CDS |
| TACATTGCCACCTCCCATCT+GGG | 0.463374 | 8.3:+16868483 | None:intergenic |
| ACTTCTCTTGTTCCCCAGAT+GGG | 0.464390 | 8.3:-16868496 | MS.gene033221:CDS |
| AGTTCCGTATCCATTTCAAT+GGG | 0.464869 | 8.3:-16866138 | MS.gene033221:CDS |
| AGAATGATCGATATTGTTGC+TGG | 0.465220 | 8.3:+16868180 | None:intergenic |
| ACAATATCGATCATTCTTGC+TGG | 0.468221 | 8.3:-16868174 | MS.gene033221:CDS |
| CTCCGATTACTGCGGGCAAT+CGG | 0.469149 | 8.3:+16868220 | None:intergenic |
| TACAATACCTCTATAGGATC+CGG | 0.469817 | 8.3:+16868135 | None:intergenic |
| CAGTATAGTGCAGCGACAAT+GGG | 0.472587 | 8.3:+16864253 | None:intergenic |
| GTTATGCAGTAAGAAACATT+TGG | 0.472916 | 8.3:+16873431 | None:intergenic |
| ATTGCTAGTATTTGTTTCAC+AGG | 0.475975 | 8.3:-16867291 | MS.gene033221:intron |
| CAACATTATCTTGTGATGCT+GGG | 0.482071 | 8.3:-16868538 | MS.gene033221:CDS |
| ACATTTGGAAGCTGATCCTT+CGG | 0.486409 | 8.3:+16873446 | None:intergenic |
| GCCTGAACTATCAGTGCGGC+AGG | 0.490715 | 8.3:+16866987 | None:intergenic |
| GATAGATAAACCCAAGAAGA+TGG | 0.491688 | 8.3:+16864029 | None:intergenic |
| ACTTGGTCCTAAAACTATTG+AGG | 0.494306 | 8.3:+16864067 | None:intergenic |
| TTCTTAGTCGGGGTATTGGT+TGG | 0.497089 | 8.3:-16865076 | MS.gene033221:CDS |
| AATACTAGCAATACAAGCTC+TGG | 0.497265 | 8.3:+16867302 | None:intergenic |
| GCTTCGCCTGCATCAAATGA+AGG | 0.499113 | 8.3:+16866110 | None:intergenic |
| GCAGTATAGTGCAGCGACAA+TGG | 0.501040 | 8.3:+16864252 | None:intergenic |
| AAGCGACAATTAGAGCGCCT+TGG | 0.503518 | 8.3:+16867838 | None:intergenic |
| AATGGCAGGAGGTGGAGCTC+CGG | 0.503871 | 8.3:-16873501 | MS.gene033221:CDS |
| CAAATAGTATTAGGGTTTAG+CGG | 0.510367 | 8.3:-16867807 | MS.gene033221:CDS |
| TAGGAAGAAATGGCAGGAGG+TGG | 0.511282 | 8.3:-16873509 | None:intergenic |
| GGTGCCCCTTCATTTGATGC+AGG | 0.512396 | 8.3:-16866116 | MS.gene033221:CDS |
| TTTCCTTATAGTGAAAATGC+TGG | 0.520510 | 8.3:-16864785 | MS.gene033221:intron |
| TACCACCATCCATTCTTAGT+CGG | 0.522635 | 8.3:-16865088 | MS.gene033221:CDS |
| AGTTCACACCGGAGCAAGAT+GGG | 0.524476 | 8.3:-16863962 | MS.gene033221:intron |
| AGCTGATCCTTCGGTGGATG+CGG | 0.527005 | 8.3:+16873455 | None:intergenic |
| AAGTATTTATTTAGATTGAA+AGG | 0.529186 | 8.3:+16863566 | None:intergenic |
| ATTTGTTACATGCAGTCTAG+TGG | 0.536187 | 8.3:-16865152 | MS.gene033221:intron |
| CAAACACTACTCTTTGTGGC+TGG | 0.539278 | 8.3:-16868276 | MS.gene033221:CDS |
| CTAAGAATGGATGGTGGTAA+TGG | 0.540732 | 8.3:+16865092 | None:intergenic |
| GTCTTTGGCGAAATGTTGCA+AGG | 0.546467 | 8.3:-16867785 | MS.gene033221:intron |
| TGACGAGCCGGATCCTATAG+AGG | 0.546780 | 8.3:-16868142 | MS.gene033221:intron |
| AGCATTGGTGGGATAAGTAC+AGG | 0.547825 | 8.3:-16863631 | MS.gene033221:CDS |
| CAGTTCACACCGGAGCAAGA+TGG | 0.550387 | 8.3:-16863963 | MS.gene033221:CDS |
| AAACCCTAATACTATTTGAA+GGG | 0.555146 | 8.3:+16867812 | None:intergenic |
| GGAGAAGCCTAATACAAACT+TGG | 0.557179 | 8.3:+16864050 | None:intergenic |
| AACAAAGGATGTCATCATCA+TGG | 0.564105 | 8.3:+16866082 | None:intergenic |
| GCCTAATAGATGCTGCTCCA+TGG | 0.564558 | 8.3:-16866966 | MS.gene033221:intron |
| GAAATTCAAGAAGATAATGC+GGG | 0.565136 | 8.3:-16867865 | MS.gene033221:CDS |
| CGATATTGTTGCTGGAACGA+AGG | 0.565616 | 8.3:+16868188 | None:intergenic |
| CCAGCATCACAAGATAATGT+TGG | 0.565678 | 8.3:+16868539 | None:intergenic |
| AAGACAGAGGAAAGCATTGG+TGG | 0.566646 | 8.3:-16863643 | MS.gene033221:CDS |
| AAGATAATGCGGGCAACCCA+AGG | 0.567568 | 8.3:-16867855 | MS.gene033221:CDS |
| ATCCTTTGTTGCTCTAGTAG+AGG | 0.572855 | 8.3:-16866069 | MS.gene033221:intron |
| TAGTGCAGCGACAATGGGAG+GGG | 0.574206 | 8.3:+16864258 | None:intergenic |
| ACCACCTAAGTTACACAGAT+GGG | 0.574576 | 8.3:+16863543 | None:intergenic |
| AGTAACTCACGCCAAGGTGG+AGG | 0.574584 | 8.3:+16873404 | None:intergenic |
| TACAGTTAGGAAGAAATGGC+AGG | 0.575001 | 8.3:-16873515 | None:intergenic |
| AGAGTGGTTCAAATATCCGC+AGG | 0.575012 | 8.3:-16864731 | MS.gene033221:CDS |
| CTTCGCCTGCATCAAATGAA+GGG | 0.577275 | 8.3:+16866111 | None:intergenic |
| TCTCTTGTTCCCCAGATGGG+AGG | 0.578580 | 8.3:-16868493 | MS.gene033221:CDS |
| GAGGCATACCCATCTTGCTC+CGG | 0.578751 | 8.3:+16863954 | None:intergenic |
| AACCACCTAAGTTACACAGA+TGG | 0.579661 | 8.3:+16863542 | None:intergenic |
| ATATCATTTGTAGGCTCGGG+AGG | 0.585910 | 8.3:-16864114 | MS.gene033221:intron |
| ACGCGTCGGCAGTCGAAGAG+TGG | 0.586302 | 8.3:-16864747 | MS.gene033221:CDS |
| ATCTGGGGAACAAGAGAAGT+AGG | 0.586891 | 8.3:+16868499 | None:intergenic |
| GCACCCCATTGAAATGGATA+CGG | 0.591804 | 8.3:+16866134 | None:intergenic |
| TACCTCTACTAGAGCAACAA+AGG | 0.594784 | 8.3:+16866067 | None:intergenic |
| TGGTCGATTCAATGACGAGC+CGG | 0.595657 | 8.3:-16868154 | MS.gene033221:CDS |
| TTTATTTAGATTGAAAGGCA+GGG | 0.596834 | 8.3:+16863571 | None:intergenic |
| GTGTACTCGTTGAAGTACTG+TGG | 0.597313 | 8.3:+16864006 | None:intergenic |
| ACCAAAGGAACTGCTGAGAG+TGG | 0.597590 | 8.3:+16867486 | None:intergenic |
| TAAGAGCCTCCGATTACTGC+GGG | 0.598802 | 8.3:+16868213 | None:intergenic |
| TATAGTGCAGCGACAATGGG+AGG | 0.601160 | 8.3:+16864256 | None:intergenic |
| AGAAATTCAAGAAGATAATG+CGG | 0.603700 | 8.3:-16867866 | MS.gene033221:CDS |
| ATAGTGCAGCGACAATGGGA+GGG | 0.605016 | 8.3:+16864257 | None:intergenic |
| GGAAAGACAGAGGAAAGCAT+TGG | 0.608090 | 8.3:-16863646 | MS.gene033221:CDS |
| GGATGTCATCATCATGGCAA+AGG | 0.608481 | 8.3:+16866088 | None:intergenic |
| TGTACTCGTTGAAGTACTGT+GGG | 0.612732 | 8.3:+16864007 | None:intergenic |
| TGTTCACGGTTGCAATTGTG+TGG | 0.617824 | 8.3:-16867074 | MS.gene033221:CDS |
| ACCACAACCGCATCCACCGA+AGG | 0.623080 | 8.3:-16873462 | MS.gene033221:CDS |
| TTTCCTGAATGGAGCACATG+GGG | 0.627157 | 8.3:+16867123 | None:intergenic |
| GCATAACAAGTCCTCCACCT+TGG | 0.628357 | 8.3:-16873415 | MS.gene033221:CDS |
| TTCGCCTGCATCAAATGAAG+GGG | 0.629691 | 8.3:+16866112 | None:intergenic |
| TTTGGAAGCTGATCCTTCGG+TGG | 0.629961 | 8.3:+16873449 | None:intergenic |
| AGTGCAGCGACAATGGGAGG+GGG | 0.632519 | 8.3:+16864259 | None:intergenic |
| ATACCCCGACTAAGAATGGA+TGG | 0.633541 | 8.3:+16865083 | None:intergenic |
| AAACCAACAAGAGATACCAA+AGG | 0.636815 | 8.3:+16867471 | None:intergenic |
| CCACCATCCATTCTTAGTCG+GGG | 0.641952 | 8.3:-16865086 | MS.gene033221:CDS |
| AGACAGAGGAAAGCATTGGT+GGG | 0.646989 | 8.3:-16863642 | MS.gene033221:CDS |
| GAGTGGTTCAAATATCCGCA+GGG | 0.654618 | 8.3:-16864730 | MS.gene033221:CDS |
| CGATTGCCCGCAGTAATCGG+AGG | 0.657165 | 8.3:-16868219 | MS.gene033221:CDS |
| TCTGCTATTCGGAAAGACAG+AGG | 0.662986 | 8.3:-16863656 | MS.gene033221:CDS |
| AGATACAGAAGATCCAATGC+CGG | 0.666151 | 8.3:+16864898 | None:intergenic |
| GTATGAGTTAGGCTTTCCTG+GGG | 0.670750 | 8.3:-16867442 | MS.gene033221:intron |
| ACATTGCCACCTCCCATCTG+GGG | 0.672994 | 8.3:+16868484 | None:intergenic |
| TCTGCGTTGTACGTTTAACG+TGG | 0.676085 | 8.3:+16867013 | None:intergenic |
| ATAAGAGCCTCCGATTACTG+CGG | 0.677413 | 8.3:+16868212 | None:intergenic |
| TAAAGTAACTCACGCCAAGG+TGG | 0.696583 | 8.3:+16873401 | None:intergenic |
| AGTTAGGAAGAAATGGCAGG+AGG | 0.712374 | 8.3:-16873512 | None:intergenic |
| AAAGAAAATCATAAACCCTG+CGG | 0.713858 | 8.3:+16864715 | None:intergenic |
| AAGAGAAGTAGGAATTAACA+CGG | 0.724184 | 8.3:+16868510 | None:intergenic |
| CCCCGACTAAGAATGGATGG+TGG | 0.740032 | 8.3:+16865086 | None:intergenic |
| GTTCCGTATCCATTTCAATG+GGG | 0.744828 | 8.3:-16866137 | MS.gene033221:CDS |
| TTAGGCCTGAACTATCAGTG+CGG | 0.794578 | 8.3:+16866983 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 16863553 | 16873522 | 16863553 | ID=MS.gene033221 |
| chr8.3 | mRNA | 16863553 | 16873522 | 16863553 | ID=MS.gene033221.t1;Parent=MS.gene033221 |
| chr8.3 | exon | 16873414 | 16873522 | 16873414 | ID=MS.gene033221.t1.exon1;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16873414 | 16873522 | 16873414 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16868486 | 16868583 | 16868486 | ID=MS.gene033221.t1.exon2;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16868486 | 16868583 | 16868486 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16868143 | 16868319 | 16868143 | ID=MS.gene033221.t1.exon3;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16868143 | 16868319 | 16868143 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16867786 | 16867886 | 16867786 | ID=MS.gene033221.t1.exon4;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16867786 | 16867886 | 16867786 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16867443 | 16867518 | 16867443 | ID=MS.gene033221.t1.exon5;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16867443 | 16867518 | 16867443 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16867292 | 16867351 | 16867292 | ID=MS.gene033221.t1.exon6;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16867292 | 16867351 | 16867292 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16866967 | 16867151 | 16866967 | ID=MS.gene033221.t1.exon7;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16866967 | 16867151 | 16866967 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16866070 | 16866166 | 16866070 | ID=MS.gene033221.t1.exon8;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16866070 | 16866166 | 16866070 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16865073 | 16865159 | 16865073 | ID=MS.gene033221.t1.exon9;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16865073 | 16865159 | 16865073 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16864896 | 16864954 | 16864896 | ID=MS.gene033221.t1.exon10;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16864896 | 16864954 | 16864896 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16864705 | 16864796 | 16864705 | ID=MS.gene033221.t1.exon11;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16864705 | 16864796 | 16864705 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16864233 | 16864310 | 16864233 | ID=MS.gene033221.t1.exon12;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16864233 | 16864310 | 16864233 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16863963 | 16864123 | 16863963 | ID=MS.gene033221.t1.exon13;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16863963 | 16864123 | 16863963 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| chr8.3 | exon | 16863553 | 16863771 | 16863553 | ID=MS.gene033221.t1.exon14;Parent=MS.gene033221.t1 |
| chr8.3 | CDS | 16863553 | 16863771 | 16863553 | ID=cds.MS.gene033221.t1;Parent=MS.gene033221.t1 |
| Gene Sequence |
| Protein sequence |
