AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96701


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96701.t1 MTR_1g106085 95.896 536 13 1 1 536 1 527 0.0 1030
MS.gene96701.t1 MTR_3g078270 60.681 529 205 2 10 535 3 531 0.0 665
MS.gene96701.t1 MTR_8g063220 60.000 530 209 2 9 535 3 532 0.0 661
MS.gene96701.t1 MTR_4g106750 59.546 529 211 2 10 535 3 531 0.0 655
MS.gene96701.t1 MTR_3g103230 58.447 515 208 3 24 535 42 553 0.0 632
MS.gene96701.t1 MTR_5g035180 59.273 523 209 4 17 535 15 537 0.0 627
MS.gene96701.t1 MTR_4g106750 59.751 482 192 1 56 535 1 482 0.0 598
MS.gene96701.t1 MTR_5g022110 55.916 524 223 4 17 535 26 546 0.0 591
MS.gene96701.t1 MTR_8g086520 54.111 523 234 3 17 536 5 524 0.0 585
MS.gene96701.t1 MTR_2g016460 54.739 517 227 4 24 536 11 524 0.0 582
MS.gene96701.t1 MTR_3g080390 55.922 515 221 3 24 534 6 518 0.0 566
MS.gene96701.t1 MTR_1g021120 52.242 513 241 3 25 535 36 546 0.0 522
MS.gene96701.t1 MTR_8g086520 55.034 447 197 2 17 460 5 450 3.11e-176 505
MS.gene96701.t1 MTR_4g106750 61.186 371 142 1 167 535 9 379 9.30e-169 483
MS.gene96701.t1 MTR_8g086520 56.683 404 169 3 134 534 6 406 8.01e-165 474
MS.gene96701.t1 MTR_8g086520 54.156 397 178 2 17 410 5 400 2.40e-151 439
MS.gene96701.t1 MTR_8g068550 32.955 528 302 6 46 533 240 755 1.46e-95 307
MS.gene96701.t1 MTR_5g032020 33.083 532 316 6 32 529 168 693 5.10e-94 301
MS.gene96701.t1 MTR_2g084895 32.836 536 314 9 36 533 151 678 3.35e-88 286
MS.gene96701.t1 MTR_4g055290 33.142 522 300 8 49 533 171 680 9.56e-84 274
MS.gene96701.t1 MTR_2g103510 31.284 553 302 14 18 533 80 591 2.94e-80 263
MS.gene96701.t1 MTR_8g086535 64.583 96 32 1 319 412 23 118 8.61e-33 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96701.t1 AT1G49960 69.349 522 157 2 17 535 4 525 0.0 717
MS.gene96701.t1 AT5G62890 60.302 529 207 3 10 535 3 531 0.0 653
MS.gene96701.t1 AT5G62890 60.302 529 207 3 10 535 3 531 0.0 653
MS.gene96701.t1 AT5G62890 60.302 529 207 3 10 535 3 531 0.0 653
MS.gene96701.t1 AT1G60030 58.621 522 213 3 17 535 16 537 0.0 639
MS.gene96701.t1 AT1G10540 56.952 525 220 3 17 535 14 538 0.0 627
MS.gene96701.t1 AT5G49990 58.915 516 209 2 23 535 12 527 0.0 608
MS.gene96701.t1 AT5G49990 58.915 516 209 2 23 535 12 527 0.0 608
MS.gene96701.t1 AT5G49990 58.915 516 209 2 23 535 12 527 0.0 608
MS.gene96701.t1 AT5G49990 58.915 516 209 2 23 535 12 527 0.0 608
MS.gene96701.t1 AT1G65550 53.119 529 236 4 17 535 14 540 0.0 593
MS.gene96701.t1 AT2G34190 55.706 517 222 4 24 536 11 524 0.0 587
MS.gene96701.t1 AT5G62890 61.404 456 173 3 10 462 3 458 0.0 563
MS.gene96701.t1 AT2G05760 53.204 515 235 3 24 534 6 518 0.0 555
MS.gene96701.t1 AT2G26510 50.973 514 248 3 25 535 36 548 1.26e-177 512
MS.gene96701.t1 AT1G10540 57.867 375 152 3 17 385 14 388 9.80e-152 440
MS.gene96701.t1 AT5G25420 45.676 451 178 4 17 466 26 410 4.30e-134 396
MS.gene96701.t1 AT2G26510 53.022 364 168 2 25 385 36 399 2.88e-125 373
MS.gene96701.t1 AT2G26510 52.422 351 164 2 25 372 36 386 3.50e-118 355
MS.gene96701.t1 AT4G38050 33.210 539 306 7 36 533 179 704 4.33e-87 283
MS.gene96701.t1 AT2G27810 33.516 546 318 8 26 533 163 701 2.95e-86 281
MS.gene96701.t1 AT2G27810 32.632 570 315 10 26 533 163 725 2.72e-81 269
MS.gene96701.t1 AT2G27810 35.349 430 253 6 26 433 163 589 5.39e-71 238
MS.gene96701.t1 AT2G27810 35.770 383 221 6 26 386 163 542 2.25e-61 211

Find 134 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTATTCTTGTTCCTTTGA+TGG 0.198717 1.1:-76350486 MS.gene96701:CDS
GTTTATAAATCAGGTAAATT+TGG 0.217881 1.1:-76347614 MS.gene96701:intron
GGTGGTGGTGGAGGAGGTGG+TGG 0.231755 1.1:-76350761 MS.gene96701:CDS
CAATACACGGCTGCTATTAT+TGG 0.243252 1.1:+76347566 None:intergenic
GGTGGTGGTGGTGGAGGAGG+TGG 0.258082 1.1:-76350764 MS.gene96701:CDS
AATTATAGTTGCTTACTTCT+TGG 0.265429 1.1:-76346986 MS.gene96701:CDS
GCCTTGTTTGGCGCAGCAAC+TGG 0.284735 1.1:-76348145 MS.gene96701:CDS
CTCGAATATCTCACACTATC+TGG 0.311355 1.1:-76347174 MS.gene96701:CDS
TCCTTTGTTCAAGGAATGAT+TGG 0.311355 1.1:-76349995 MS.gene96701:CDS
GGTGAAAGTGGTGGTGGTGG+TGG 0.333045 1.1:-76350776 MS.gene96701:CDS
ACTCTTCTGGATGCCTTGTT+TGG 0.338596 1.1:-76348157 MS.gene96701:CDS
CTTATTGCTTCCTTTGTTCA+AGG 0.341648 1.1:-76350004 MS.gene96701:CDS
ACTAGGCTTCCAGTGGTTAT+AGG 0.341886 1.1:-76350283 MS.gene96701:CDS
TTAGGGTATAGGCACTCTTC+TGG 0.345374 1.1:-76348170 MS.gene96701:intron
GTTCCCCTTGTAACTCTAAC+TGG 0.347094 1.1:-76349790 MS.gene96701:CDS
GACAGACCTGACGAGGATTA+AGG 0.355818 1.1:+76350197 None:intergenic
AATCTCTTGTAACAGTCAAC+TGG 0.358889 1.1:-76348362 MS.gene96701:intron
TACTTAGCCGCGGTGTTGGC+TGG 0.363924 1.1:-76348286 MS.gene96701:CDS
GGACATGGCCCTGCTCATAC+TGG 0.367899 1.1:-76347153 MS.gene96701:CDS
TTCATCGCTGCATCAAGATT+TGG 0.370746 1.1:-76348335 MS.gene96701:CDS
TTACTGTTGATTGCTGTGTT+AGG 0.377345 1.1:-76350697 MS.gene96701:CDS
GGCCTAGGACTCTTTGTGAT+AGG 0.379791 1.1:-76349769 MS.gene96701:CDS
AAAATTTAGGACCTTCAATC+AGG 0.384429 1.1:-76346902 MS.gene96701:CDS
TGAGCAGCTTCAGCTGGACT+TGG 0.390320 1.1:-76347288 MS.gene96701:intron
CAACATTACATTGTTATGCT+TGG 0.391706 1.1:-76350527 MS.gene96701:CDS
AGTTGCCGTACTGACCGATC+TGG 0.396352 1.1:-76349062 MS.gene96701:CDS
ACTATTCTTGTTCCTTTGAT+GGG 0.400549 1.1:-76350485 MS.gene96701:CDS
GTGTTAGGAGCTCACCTTCA+TGG 0.405039 1.1:-76350682 MS.gene96701:CDS
GCTGGTGAAAGTGGTGGTGG+TGG 0.405192 1.1:-76350779 MS.gene96701:CDS
AGTTTGATGATTTAGGGTAT+AGG 0.429815 1.1:-76348181 MS.gene96701:intron
GCCTAGGACTCTTTGTGATA+GGG 0.430014 1.1:-76349768 MS.gene96701:CDS
AGTCAAAATGCAGGATTGTT+GGG 0.433330 1.1:-76347961 MS.gene96701:CDS
GAGTTCCGTATCCATTTCAA+TGG 0.438140 1.1:-76348755 MS.gene96701:CDS
ATCAGAAGTGATGAGTTCTA+TGG 0.440514 1.1:-76346877 MS.gene96701:CDS
CTGTGATGAGCAGCTTCAGC+TGG 0.443945 1.1:-76347294 MS.gene96701:intron
ACTTCTGATATCCTGATTGA+AGG 0.449917 1.1:+76346891 None:intergenic
TAGTCAAAATGCAGGATTGT+TGG 0.453962 1.1:-76347962 MS.gene96701:CDS
TGTTGGGTCTAACACGCGTT+GGG 0.454667 1.1:-76347945 MS.gene96701:CDS
TGCAGACATGGCTTGGAACT+AGG 0.457743 1.1:-76350300 MS.gene96701:CDS
TTGGCAGATTGTGTTGAGAT+TGG 0.458776 1.1:-76349618 MS.gene96701:CDS
TCTTCCTGCATTGGTTACTC+TGG 0.465877 1.1:-76349595 MS.gene96701:CDS
CATCAAAGGAACAAGAATAG+TGG 0.469158 1.1:+76350487 None:intergenic
TCTGTACTTAGCCGCGGTGT+TGG 0.469403 1.1:-76348290 MS.gene96701:CDS
TAGCCGCGGTGTTGGCTGGC+TGG 0.472588 1.1:-76348282 MS.gene96701:intron
TGTGTTCTCTTTGCATATGT+CGG 0.473198 1.1:-76347545 MS.gene96701:intron
AGTTCCGTATCCATTTCAAT+GGG 0.475091 1.1:-76348754 MS.gene96701:CDS
ACAGTAAGTTGTTCCTTGAC+AGG 0.477631 1.1:+76350713 None:intergenic
ACTCTGTTGCAGACATGGCT+TGG 0.479227 1.1:-76350307 MS.gene96701:CDS
TGTATTCCTTAATCCTCGTC+AGG 0.479851 1.1:-76350203 MS.gene96701:intron
TGAGATTGGTCTTCCTGCAT+TGG 0.479893 1.1:-76349604 MS.gene96701:CDS
CTAGGCCAGTTAGAGTTACA+AGG 0.480139 1.1:+76349785 None:intergenic
CTTGTTCCTTTGATGGGTGG+TGG 0.483527 1.1:-76350479 MS.gene96701:CDS
TACTCTGGTCATCCTCTCCC+AGG 0.486968 1.1:-76349580 MS.gene96701:intron
AGTTGTTCCTTGACAGGATG+AGG 0.494608 1.1:+76350719 None:intergenic
ATATCACCAACATTGAAAGT+AGG 0.500875 1.1:+76348726 None:intergenic
TGCCCCTTGAATAGCTCTCA+TGG 0.504533 1.1:+76350030 None:intergenic
TTCTCTTGTTGCAATTGTAG+AGG 0.505227 1.1:-76348685 MS.gene96701:intron
GAGAATGCCACAGAAATAGC+TGG 0.506607 1.1:+76350238 None:intergenic
GGTTAATTACTGCCGCTCCA+TGG 0.508265 1.1:-76349040 MS.gene96701:intron
TATCACCAACATTGAAAGTA+GGG 0.515321 1.1:+76348727 None:intergenic
CTTGTAACTCTAACTGGCCT+AGG 0.515850 1.1:-76349784 MS.gene96701:CDS
TCAACACTCTGTTGCAGACA+TGG 0.520169 1.1:-76350312 MS.gene96701:CDS
TCTTTGTGATAGGGTTTCCA+AGG 0.520833 1.1:-76349759 MS.gene96701:CDS
AGAGTCATTCAAATATCAGC+TGG 0.521155 1.1:-76347916 MS.gene96701:CDS
TTTGCAGTCATAGTCACGAT+TGG 0.530572 1.1:-76349158 MS.gene96701:CDS
ATGACCAGAGTAACCAATGC+AGG 0.531144 1.1:+76349591 None:intergenic
TACAGATCAATGTTCATCGT+TGG 0.532814 1.1:-76347237 MS.gene96701:CDS
GAGGTGGATCCAGTATGAGC+AGG 0.532820 1.1:+76347144 None:intergenic
ACCCTATCACAAAGAGTCCT+AGG 0.536299 1.1:+76349767 None:intergenic
TCCAATCATTCCTTGAACAA+AGG 0.540616 1.1:+76349994 None:intergenic
GTCTAACACGCGTTGGGAGT+CGG 0.541524 1.1:-76347939 MS.gene96701:CDS
GTTGCCGTACTGACCGATCT+GGG 0.544476 1.1:-76349061 MS.gene96701:CDS
GGGAGCCCTACTTTCAATGT+TGG 0.546761 1.1:-76348732 MS.gene96701:CDS
CAATCCATGAGAGCTATTCA+AGG 0.546761 1.1:-76350034 MS.gene96701:CDS
TCCAGTTGCTGCGCCAAACA+AGG 0.547910 1.1:+76348144 None:intergenic
AAAGATGCTCCTATAACCAC+TGG 0.549867 1.1:+76350274 None:intergenic
AATGAGTGCATTTAGGCTGA+AGG 0.552105 1.1:+76346826 None:intergenic
TAGTCACGATTGGAATTGCA+TGG 0.554844 1.1:-76349148 MS.gene96701:CDS
TCTTATTCCAGCTATTTCTG+TGG 0.555907 1.1:-76350245 MS.gene96701:CDS
CCCACTGTCACGGTGAGTTG+AGG 0.557039 1.1:+76346939 None:intergenic
ATTCTTGTTCCTTTGATGGG+TGG 0.557666 1.1:-76350482 MS.gene96701:CDS
GCAGCTGGTGAAAGTGGTGG+TGG 0.562807 1.1:-76350782 MS.gene96701:CDS
ATCGCTGCATCAAGATTTGG+CGG 0.564712 1.1:-76348332 MS.gene96701:CDS
TCGTGACTATGACTGCAAAT+CGG 0.567669 1.1:+76349162 None:intergenic
CAGATAGTGTGAGATATTCG+AGG 0.569216 1.1:+76347175 None:intergenic
CCACAAAAGATTAAATCAAG+AGG 0.575339 1.1:-76349191 MS.gene96701:CDS
ACCAGTGTCTCCCACTGTCA+CGG 0.575457 1.1:+76346929 None:intergenic
CGGCAGTAATTAACCCAGAT+CGG 0.576534 1.1:+76349048 None:intergenic
ATGAGTGCATTTAGGCTGAA+GGG 0.578950 1.1:+76346827 None:intergenic
GAAAGAGAAACAATGGCAGC+TGG 0.580304 1.1:-76350797 None:intergenic
AATCCATGAGAGCTATTCAA+GGG 0.583596 1.1:-76350033 MS.gene96701:CDS
AGTCACGATTGGAATTGCAT+GGG 0.588659 1.1:-76349147 MS.gene96701:CDS
ATGGGTTACTTACGCCATGA+AGG 0.588819 1.1:+76350668 None:intergenic
TAAAGTAACATACCTGGGAG+AGG 0.589098 1.1:+76349568 None:intergenic
ACCGTGACAGTGGGAGACAC+TGG 0.589213 1.1:-76346930 MS.gene96701:CDS
TTATTGCATTTGCAGCTGAA+GGG 0.589241 1.1:-76350565 MS.gene96701:intron
GCCTCAACTCACCGTGACAG+TGG 0.591700 1.1:-76346940 MS.gene96701:CDS
ACGGCTGCTATTATTGGCAA+TGG 0.594763 1.1:+76347572 None:intergenic
CTTTGTGATAGGGTTTCCAA+GGG 0.595097 1.1:-76349758 MS.gene96701:intron
TTAACCCAGATCGGTCAGTA+CGG 0.603808 1.1:+76349057 None:intergenic
CCTCAACTCACCGTGACAGT+GGG 0.606252 1.1:-76346939 MS.gene96701:CDS
CAAAATGTACACTGATGCGG+TGG 0.607400 1.1:+76348120 None:intergenic
AGGTGGATCCAGTATGAGCA+GGG 0.613316 1.1:+76347145 None:intergenic
TGCTCATACTGGATCCACCT+CGG 0.614287 1.1:-76347142 MS.gene96701:intron
ACAATGGCAGCTGGTGAAAG+TGG 0.615031 1.1:-76350788 MS.gene96701:CDS
TTCCGTATCCATTTCAATGG+GGG 0.618485 1.1:-76348752 MS.gene96701:CDS
ACATTGCCACCACCCATCAA+AGG 0.619800 1.1:+76350473 None:intergenic
ATCTCTTGTAACAGTCAACT+GGG 0.625026 1.1:-76348361 MS.gene96701:intron
AATAGTGGAAACAATGACAA+TGG 0.627526 1.1:+76350502 None:intergenic
TTGTTGGGTCTAACACGCGT+TGG 0.628068 1.1:-76347946 MS.gene96701:CDS
GTCACGATTGGAATTGCATG+GGG 0.628860 1.1:-76349146 MS.gene96701:CDS
CTACACAGACAGACCTGACG+AGG 0.630435 1.1:+76350190 None:intergenic
GTGACAGTGGGAGACACTGG+TGG 0.631148 1.1:-76346927 MS.gene96701:CDS
ACACCGCGGCTAAGTACAGA+AGG 0.633774 1.1:+76348293 None:intergenic
AGATATTCGAGGAAATATTG+TGG 0.636493 1.1:+76347186 None:intergenic
GCTTGGAACTAGGCTTCCAG+TGG 0.642697 1.1:-76350290 MS.gene96701:CDS
CCACCTTCTGTACTTAGCCG+CGG 0.651344 1.1:-76348296 MS.gene96701:CDS
AAGATATATATGTACCGAGG+TGG 0.652379 1.1:+76347128 None:intergenic
CAAGGGGAACAGCACTGAGA+GGG 0.652878 1.1:+76349803 None:intergenic
TGCAAAGAGAACACAATACA+CGG 0.654533 1.1:+76347553 None:intergenic
TATCTCACACTATCTGGACA+TGG 0.661111 1.1:-76347168 MS.gene96701:CDS
TAGGCCAGTTAGAGTTACAA+GGG 0.662208 1.1:+76349786 None:intergenic
GGCGTGTTCACGACTCATAG+TGG 0.664546 1.1:+76346960 None:intergenic
TACCAAGACTGACCATGGAG+CGG 0.672864 1.1:+76349028 None:intergenic
ATCCATGAGAGCTATTCAAG+GGG 0.676734 1.1:-76350032 MS.gene96701:CDS
TGACAGTGGGAGACACTGGT+GGG 0.683936 1.1:-76346926 MS.gene96701:CDS
ACAAGGGGAACAGCACTGAG+AGG 0.687831 1.1:+76349802 None:intergenic
CAACAAAATGTACACTGATG+CGG 0.695683 1.1:+76348117 None:intergenic
CCGCGGCTAAGTACAGAAGG+TGG 0.698072 1.1:+76348296 None:intergenic
ATGGCAGCTGGTGAAAGTGG+TGG 0.716876 1.1:-76350785 MS.gene96701:CDS
AGGCCAGTTAGAGTTACAAG+GGG 0.717548 1.1:+76349787 None:intergenic
GTTCCGTATCCATTTCAATG+GGG 0.719924 1.1:-76348753 MS.gene96701:CDS
CAACTGAATTGAGTACTCAG+TGG 0.730095 1.1:+76349080 None:intergenic
GTACCAGCCAGCCAACACCG+CGG 0.843946 1.1:+76348279 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCATAAAAATATATAAAAAA+AGG + chr1.1:76347905-76347924 None:intergenic 10.0%
!!! CCTTTTTTTATATATTTTTA+TGG - chr1.1:76347902-76347921 MS.gene96701:CDS 10.0%
!! GTTTACAACTAAATATTATT+GGG - chr1.1:76348740-76348759 MS.gene96701:CDS 15.0%
!! TGTTTACAACTAAATATTAT+TGG - chr1.1:76348739-76348758 MS.gene96701:CDS 15.0%
!! TTGTTAAATAAATGATCATT+AGG + chr1.1:76347951-76347970 None:intergenic 15.0%
!!! TTAATTTTGTTATGTTTTGA+GGG - chr1.1:76347231-76347250 MS.gene96701:CDS 15.0%
!!! TTTAATTTTGTTATGTTTTG+AGG - chr1.1:76347230-76347249 MS.gene96701:CDS 15.0%
!!! TTTAATTTTTAGTTTCCATT+TGG - chr1.1:76349204-76349223 MS.gene96701:intron 15.0%
!! AAAACCAAATTACAACAAAA+TGG + chr1.1:76346976-76346995 None:intergenic 20.0%
!! AAACCAAATTACAACAAAAT+GGG + chr1.1:76346975-76346994 None:intergenic 20.0%
!! AATATCAAAGTATAACCAAA+TGG + chr1.1:76349222-76349241 None:intergenic 20.0%
!! ACTTTATGAGAAACAAAAAA+TGG + chr1.1:76347009-76347028 None:intergenic 20.0%
!! AGTAAAAAACAAATTATCCA+AGG + chr1.1:76349600-76349619 None:intergenic 20.0%
!! ATCAAAATAAGAATCAAAGA+TGG + chr1.1:76350552-76350571 None:intergenic 20.0%
!! ATTAAAGTAAGAGATTTGAA+TGG - chr1.1:76348292-76348311 MS.gene96701:CDS 20.0%
!! CTTTATGAGAAACAAAAAAT+GGG + chr1.1:76347008-76347027 None:intergenic 20.0%
!! GTTTATAAATCAGGTAAATT+TGG - chr1.1:76350008-76350027 MS.gene96701:CDS 20.0%
!!! AACTTTTTCTTCATTTTGTT+TGG - chr1.1:76347192-76347211 MS.gene96701:CDS 20.0%
!!! ATTTAACAAACATACTCTTT+TGG - chr1.1:76347962-76347981 MS.gene96701:CDS 20.0%
!!! GAAAGAATTTGACATTTTAA+AGG + chr1.1:76350286-76350305 None:intergenic 20.0%
!!! GAAATCACTTATTTGTTTTT+TGG + chr1.1:76350201-76350220 None:intergenic 20.0%
!!! TAATTTTATCATCCTTATGT+TGG - chr1.1:76350142-76350161 MS.gene96701:intron 20.0%
! AAAAATCTGTTCAGATTCAT+AGG + chr1.1:76350775-76350794 None:intergenic 25.0%
! AATAGCCAGATTACAATATT+CGG + chr1.1:76349165-76349184 None:intergenic 25.0%
! AATTATAGTTGCTTACTTCT+TGG - chr1.1:76350636-76350655 MS.gene96701:intron 25.0%
! ATATCACTGAGTAAATTACA+AGG + chr1.1:76348201-76348220 None:intergenic 25.0%
! ATTTACCTGATTTATAAACC+CGG + chr1.1:76350007-76350026 None:intergenic 25.0%
! CTTTACATAGATTGTTTACT+TGG - chr1.1:76347489-76347508 MS.gene96701:intron 25.0%
! GATGTATTTATTCATATTGC+AGG - chr1.1:76347788-76347807 MS.gene96701:intron 25.0%
! GTAAATAAAGTAACATACCT+GGG + chr1.1:76348062-76348081 None:intergenic 25.0%
! TATATCCGAATATTGTAATC+TGG - chr1.1:76349157-76349176 MS.gene96701:CDS 25.0%
! TGCTACACAAATATTTCAAA+AGG + chr1.1:76348117-76348136 None:intergenic 25.0%
!! AAACAATTTGTTCATTCCTA+TGG - chr1.1:76349844-76349863 MS.gene96701:intron 25.0%
!! AAATATAGACTAACTTGTGT+GGG - chr1.1:76348987-76349006 MS.gene96701:intron 25.0%
!! ATAGTGTCTTTTAATGCATT+TGG - chr1.1:76347703-76347722 MS.gene96701:intron 25.0%
!! ATGAATAGTTTTCATTAGCT+TGG - chr1.1:76347514-76347533 MS.gene96701:intron 25.0%
!! ATGCTTTTCTTCTCTATATT+TGG - chr1.1:76349733-76349752 MS.gene96701:intron 25.0%
!! TAAATATAGACTAACTTGTG+TGG - chr1.1:76348986-76349005 MS.gene96701:intron 25.0%
!! TGTTGAAGTTTGATGATTTA+GGG - chr1.1:76349435-76349454 MS.gene96701:intron 25.0%
!!! TAACCCATTTTGTTGTAATT+TGG - chr1.1:76346969-76346988 MS.gene96701:CDS 25.0%
!!! TCTCATAAAGTTTTAAGCTT+TGG - chr1.1:76347018-76347037 MS.gene96701:CDS 25.0%
AAAGATGTTGAATGAGATAG+AGG + chr1.1:76348086-76348105 None:intergenic 30.0%
AAAGTAAGAGATTTGAATGG+TGG - chr1.1:76348295-76348314 MS.gene96701:CDS 30.0%
AAGATGTTGAATGAGATAGA+GGG + chr1.1:76348085-76348104 None:intergenic 30.0%
AATACTCAGAAATTCACAGA+AGG + chr1.1:76349774-76349793 None:intergenic 30.0%
ACTATTCTTGTTCCTTTGAT+GGG - chr1.1:76347137-76347156 MS.gene96701:intron 30.0%
ACTGTTACAAGAGATTGAAA+AGG + chr1.1:76349256-76349275 None:intergenic 30.0%
AGATATTCGAGGAAATATTG+TGG + chr1.1:76350439-76350458 None:intergenic 30.0%
ATACTCAGAAATTCACAGAA+GGG + chr1.1:76349773-76349792 None:intergenic 30.0%
ATATCACCAACATTGAAAGT+AGG + chr1.1:76348899-76348918 None:intergenic 30.0%
ATGGTTATACTTATAGCAAG+AGG + chr1.1:76350533-76350552 None:intergenic 30.0%
CAACATTACATTGTTATGCT+TGG - chr1.1:76347095-76347114 MS.gene96701:intron 30.0%
CCACAAAAGATTAAATCAAG+AGG - chr1.1:76348431-76348450 MS.gene96701:intron 30.0%
CCTAAGAACTATTTGACAAT+AGG + chr1.1:76349545-76349564 None:intergenic 30.0%
CCTATTGTCAAATAGTTCTT+AGG - chr1.1:76349542-76349561 MS.gene96701:intron 30.0%
CTGTTACAAGAGATTGAAAA+GGG + chr1.1:76349255-76349274 None:intergenic 30.0%
GACGTAATAGATGATATCTT+AGG - chr1.1:76348683-76348702 MS.gene96701:intron 30.0%
GGTAAATAAAGTAACATACC+TGG + chr1.1:76348063-76348082 None:intergenic 30.0%
GTAAATTACAAGGTAAGAGT+TGG + chr1.1:76348191-76348210 None:intergenic 30.0%
GTAGAGAAAGCTAATTCAAA+TGG + chr1.1:76348811-76348830 None:intergenic 30.0%
TAAATGTGAGAACAATGTTG+TGG + chr1.1:76349921-76349940 None:intergenic 30.0%
TATCACCAACATTGAAAGTA+GGG + chr1.1:76348898-76348917 None:intergenic 30.0%
TTATTAAGTGTCTTTGACCT+TGG - chr1.1:76349580-76349599 MS.gene96701:intron 30.0%
! AAAATTTAGGACCTTCAATC+AGG - chr1.1:76350720-76350739 MS.gene96701:CDS 30.0%
! AATAGTGGAAACAATGACAA+TGG + chr1.1:76347123-76347142 None:intergenic 30.0%
! AATATAGACTAACTTGTGTG+GGG - chr1.1:76348988-76349007 MS.gene96701:intron 30.0%
! AGTTTGATGATTTAGGGTAT+AGG - chr1.1:76349441-76349460 MS.gene96701:intron 30.0%
! CCTCTTGATTTAATCTTTTG+TGG + chr1.1:76348434-76348453 None:intergenic 30.0%
! GTGTTGAAGTTTGATGATTT+AGG - chr1.1:76349434-76349453 MS.gene96701:intron 30.0%
! TCTAAGATATATATGTACCG+AGG + chr1.1:76350500-76350519 None:intergenic 30.0%
! TTTCCTTTTAGTCAAAATGC+AGG - chr1.1:76349652-76349671 MS.gene96701:intron 30.0%
!! ACATTGGTTTAACCAAAAAG+TGG + chr1.1:76348397-76348416 None:intergenic 30.0%
!! CTGTTAATTTGTTGTGTTCT+TGG - chr1.1:76347543-76347562 MS.gene96701:intron 30.0%
!! TTCTTGGTTTCATTTTTCAG+AGG - chr1.1:76347559-76347578 MS.gene96701:CDS 30.0%
!! TTGATGTTCTTTCCACTTTT+TGG - chr1.1:76348382-76348401 MS.gene96701:intron 30.0%
!!! AATCCTGCATTTTGACTAAA+AGG + chr1.1:76349658-76349677 None:intergenic 30.0%
!!! ATTGGATTTTTTGGATTCTG+GGG - chr1.1:76347645-76347664 MS.gene96701:intron 30.0%
!!! ATTTGCTGAAATTTTGACTG+CGG - chr1.1:76348499-76348518 MS.gene96701:intron 30.0%
!!! CAAGGAATGATTGGATTTTT+TGG - chr1.1:76347636-76347655 MS.gene96701:intron 30.0%
!!! GATGAAATCAGTTCTAGTTT+TGG - chr1.1:76347733-76347752 MS.gene96701:intron 30.0%
!!! GATTGGATTTTTTGGATTCT+GGG - chr1.1:76347644-76347663 MS.gene96701:intron 30.0%
!!! TGATTGGATTTTTTGGATTC+TGG - chr1.1:76347643-76347662 MS.gene96701:intron 30.0%
AAGATATATATGTACCGAGG+TGG + chr1.1:76350497-76350516 None:intergenic 35.0%
AATCCATGAGAGCTATTCAA+GGG - chr1.1:76347589-76347608 MS.gene96701:CDS 35.0%
AATCTCTTGTAACAGTCAAC+TGG - chr1.1:76349260-76349279 MS.gene96701:intron 35.0%
AATGTACAACTACAACAGCA+TGG + chr1.1:76347463-76347482 None:intergenic 35.0%
ACTTCTGATATCCTGATTGA+AGG + chr1.1:76350734-76350753 None:intergenic 35.0%
AGAGTCATTCAAATATCAGC+TGG - chr1.1:76349706-76349725 MS.gene96701:intron 35.0%
AGATGTTGAATGAGATAGAG+GGG + chr1.1:76348084-76348103 None:intergenic 35.0%
AGTCAAAATGCAGGATTGTT+GGG - chr1.1:76349661-76349680 MS.gene96701:intron 35.0%
AGTTCCGTATCCATTTCAAT+GGG - chr1.1:76348868-76348887 MS.gene96701:intron 35.0%
ATCAGAAGTGATGAGTTCTA+TGG - chr1.1:76350745-76350764 MS.gene96701:CDS 35.0%
ATCTCTTGTAACAGTCAACT+GGG - chr1.1:76349261-76349280 MS.gene96701:intron 35.0%
CAACAAAATGTACACTGATG+CGG + chr1.1:76349508-76349527 None:intergenic 35.0%
CACTATTCTTGTTCCTTTGA+TGG - chr1.1:76347136-76347155 MS.gene96701:intron 35.0%
CATCAAAGGAACAAGAATAG+TGG + chr1.1:76347138-76347157 None:intergenic 35.0%
CCACAATGTCATATTGATCA+TGG + chr1.1:76349079-76349098 None:intergenic 35.0%
CCATGATCAATATGACATTG+TGG - chr1.1:76349076-76349095 MS.gene96701:CDS 35.0%
CCTAATTACTTACTGTATCC+GGG - chr1.1:76349986-76350005 MS.gene96701:CDS 35.0%
CTTATTGCTTCCTTTGTTCA+AGG - chr1.1:76347618-76347637 MS.gene96701:intron 35.0%
GCCTAATTACTTACTGTATC+CGG - chr1.1:76349985-76350004 MS.gene96701:CDS 35.0%
TACAGATCAATGTTCATCGT+TGG - chr1.1:76350385-76350404 MS.gene96701:intron 35.0%
TAGTCAAAATGCAGGATTGT+TGG - chr1.1:76349660-76349679 MS.gene96701:intron 35.0%
TCCAATCATTCCTTGAACAA+AGG + chr1.1:76347631-76347650 None:intergenic 35.0%
TCCTTTGTTCAAGGAATGAT+TGG - chr1.1:76347627-76347646 MS.gene96701:intron 35.0%
TGCAAAGAGAACACAATACA+CGG + chr1.1:76350072-76350091 None:intergenic 35.0%
TGTATCCGGGTTTATAAATC+AGG - chr1.1:76349999-76350018 MS.gene96701:CDS 35.0%
TGTGTTCTCTTTGCATATGT+CGG - chr1.1:76350077-76350096 MS.gene96701:intron 35.0%
TTATTGCATTTGCAGCTGAA+GGG - chr1.1:76347057-76347076 MS.gene96701:intron 35.0%
TTCTCTTGTTGCAATTGTAG+AGG - chr1.1:76348937-76348956 MS.gene96701:intron 35.0%
TTTACTGTGATTCCTGTAGT+TGG - chr1.1:76347985-76348004 MS.gene96701:intron 35.0%
TTTATTGCATTTGCAGCTGA+AGG - chr1.1:76347056-76347075 MS.gene96701:intron 35.0%
! TTACTGTTGATTGCTGTGTT+AGG - chr1.1:76346925-76346944 MS.gene96701:CDS 35.0%
!! TCTGGCTATTTCTAAGTAGA+AGG - chr1.1:76349175-76349194 MS.gene96701:CDS 35.0%
!! TCTTATTCCAGCTATTTCTG+TGG - chr1.1:76347377-76347396 MS.gene96701:intron 35.0%
!! TTTGGATTCTGGGGAATTTT+TGG - chr1.1:76347654-76347673 MS.gene96701:intron 35.0%
!!! ATGTTTTGAGGGAAAACTGT+AGG - chr1.1:76347242-76347261 MS.gene96701:CDS 35.0%
!!! GGATCGGTGTTATACATTTT+CGG - chr1.1:76349009-76349028 MS.gene96701:intron 35.0%
AAAGATGCTCCTATAACCAC+TGG + chr1.1:76347351-76347370 None:intergenic 40.0%
ACAGTAAGTTGTTCCTTGAC+AGG + chr1.1:76346912-76346931 None:intergenic 40.0%
AGATATTCCAACGAAGCCAT+AGG + chr1.1:76349863-76349882 None:intergenic 40.0%
AGCTTTCTGTACATCTATGC+AGG - chr1.1:76348840-76348859 MS.gene96701:intron 40.0%
AGTCACGATTGGAATTGCAT+GGG - chr1.1:76348475-76348494 MS.gene96701:intron 40.0%
ATCCATGAGAGCTATTCAAG+GGG - chr1.1:76347590-76347609 MS.gene96701:CDS 40.0%
ATTCTTGTTCCTTTGATGGG+TGG - chr1.1:76347140-76347159 MS.gene96701:intron 40.0%
CAACTGAATTGAGTACTCAG+TGG + chr1.1:76348545-76348564 None:intergenic 40.0%
CAATACACGGCTGCTATTAT+TGG + chr1.1:76350059-76350078 None:intergenic 40.0%
CAATCCATGAGAGCTATTCA+AGG - chr1.1:76347588-76347607 MS.gene96701:CDS 40.0%
CAGATAGTGTGAGATATTCG+AGG + chr1.1:76350450-76350469 None:intergenic 40.0%
CCCGGATACAGTAAGTAATT+AGG + chr1.1:76349989-76350008 None:intergenic 40.0%
CTCGAATATCTCACACTATC+TGG - chr1.1:76350448-76350467 MS.gene96701:intron 40.0%
CTTTGTGATAGGGTTTCCAA+GGG - chr1.1:76347864-76347883 MS.gene96701:intron 40.0%
GACAATAGGTAGTGAGAAGA+GGG + chr1.1:76349531-76349550 None:intergenic 40.0%
GACACTGGTGGGAAAAATTT+AGG - chr1.1:76350707-76350726 MS.gene96701:CDS 40.0%
GAGAGAAATGTGTTTACCCT+TGG + chr1.1:76347883-76347902 None:intergenic 40.0%
GAGTTCCGTATCCATTTCAA+TGG - chr1.1:76348867-76348886 MS.gene96701:intron 40.0%
GTTCCGTATCCATTTCAATG+GGG - chr1.1:76348869-76348888 MS.gene96701:intron 40.0%
TAAAGTAACATACCTGGGAG+AGG + chr1.1:76348057-76348076 None:intergenic 40.0%
TAGGCCAGTTAGAGTTACAA+GGG + chr1.1:76347839-76347858 None:intergenic 40.0%
TAGTCACGATTGGAATTGCA+TGG - chr1.1:76348474-76348493 MS.gene96701:intron 40.0%
TATCTCACACTATCTGGACA+TGG - chr1.1:76350454-76350473 MS.gene96701:intron 40.0%
TCGTGACTATGACTGCAAAT+CGG + chr1.1:76348463-76348482 None:intergenic 40.0%
TCTTTGTGATAGGGTTTCCA+AGG - chr1.1:76347863-76347882 MS.gene96701:intron 40.0%
TGACAATAGGTAGTGAGAAG+AGG + chr1.1:76349532-76349551 None:intergenic 40.0%
TGTATTCCTTAATCCTCGTC+AGG - chr1.1:76347419-76347438 MS.gene96701:intron 40.0%
TTCATCGCTGCATCAAGATT+TGG - chr1.1:76349287-76349306 MS.gene96701:intron 40.0%
TTCCGTATCCATTTCAATGG+GGG - chr1.1:76348870-76348889 MS.gene96701:intron 40.0%
TTGGCAGATTGTGTTGAGAT+TGG - chr1.1:76348004-76348023 MS.gene96701:intron 40.0%
TTTGCAGTCATAGTCACGAT+TGG - chr1.1:76348464-76348483 MS.gene96701:intron 40.0%
! CAGCTGAAGGGATTTTTCTT+GGG - chr1.1:76347069-76347088 MS.gene96701:intron 40.0%
! TTTTCAACCTCATCCTGTCA+AGG - chr1.1:76346896-76346915 MS.gene96701:CDS 40.0%
!! GATTCTGGGGAATTTTTGGA+AGG - chr1.1:76347658-76347677 MS.gene96701:intron 40.0%
!! TTTTGAGGGAAAACTGTAGG+TGG - chr1.1:76347245-76347264 MS.gene96701:CDS 40.0%
!!! GTTGGCTTTTCTCTCTTCAT+AGG - chr1.1:76350403-76350422 MS.gene96701:intron 40.0%
ACATGCCACAAAGAAGTCAG+AGG + chr1.1:76348786-76348805 None:intergenic 45.0%
ACCCTATCACAAAGAGTCCT+AGG + chr1.1:76347858-76347877 None:intergenic 45.0%
ACGGCTGCTATTATTGGCAA+TGG + chr1.1:76350053-76350072 None:intergenic 45.0%
ACTAGGCTTCCAGTGGTTAT+AGG - chr1.1:76347339-76347358 MS.gene96701:intron 45.0%
AGGCCAGTTAGAGTTACAAG+GGG + chr1.1:76347838-76347857 None:intergenic 45.0%
AGTTCTCGCAGACCAACATA+AGG + chr1.1:76350157-76350176 None:intergenic 45.0%
AGTTGTTCCTTGACAGGATG+AGG + chr1.1:76346906-76346925 None:intergenic 45.0%
ATCGCTGCATCAAGATTTGG+CGG - chr1.1:76349290-76349309 MS.gene96701:intron 45.0%
ATGACCAGAGTAACCAATGC+AGG + chr1.1:76348034-76348053 None:intergenic 45.0%
CAAAATGTACACTGATGCGG+TGG + chr1.1:76349505-76349524 None:intergenic 45.0%
CAACACAATCTGCCAACTAC+AGG + chr1.1:76348000-76348019 None:intergenic 45.0%
CGGCAGTAATTAACCCAGAT+CGG + chr1.1:76348577-76348596 None:intergenic 45.0%
CTAGGCCAGTTAGAGTTACA+AGG + chr1.1:76347840-76347859 None:intergenic 45.0%
CTCCCCCATTGAAATGGATA+CGG + chr1.1:76348875-76348894 None:intergenic 45.0%
CTCTGCCTAGTTTGATGCTT+TGG + chr1.1:76348711-76348730 None:intergenic 45.0%
GAGAATGCCACAGAAATAGC+TGG + chr1.1:76347387-76347406 None:intergenic 45.0%
GCCTAGGACTCTTTGTGATA+GGG - chr1.1:76347854-76347873 MS.gene96701:intron 45.0%
GGAATGTACTGCAACGACAT+TGG + chr1.1:76348413-76348432 None:intergenic 45.0%
GTCACGATTGGAATTGCATG+GGG - chr1.1:76348476-76348495 MS.gene96701:intron 45.0%
GTTCATTCCTATGGCTTCGT+TGG - chr1.1:76349853-76349872 MS.gene96701:intron 45.0%
GTTCCCCTTGTAACTCTAAC+TGG - chr1.1:76347832-76347851 MS.gene96701:intron 45.0%
TCAACACTCTGTTGCAGACA+TGG - chr1.1:76347310-76347329 MS.gene96701:intron 45.0%
TTAACCCAGATCGGTCAGTA+CGG + chr1.1:76348568-76348587 None:intergenic 45.0%
TTAGGGTATAGGCACTCTTC+TGG - chr1.1:76349452-76349471 MS.gene96701:intron 45.0%
TTGCACCTCTGACTTCTTTG+TGG - chr1.1:76348778-76348797 MS.gene96701:intron 45.0%
! ACTCTTCTGGATGCCTTGTT+TGG - chr1.1:76349465-76349484 MS.gene96701:intron 45.0%
! AGACTAACTTGTGTGGGGAT+CGG - chr1.1:76348993-76349012 MS.gene96701:intron 45.0%
! AGGCTCCAAAGCATCAAACT+AGG - chr1.1:76348703-76348722 MS.gene96701:CDS 45.0%
! ATGGGTTACTTACGCCATGA+AGG + chr1.1:76346957-76346976 None:intergenic 45.0%
! CTTGTAACTCTAACTGGCCT+AGG - chr1.1:76347838-76347857 MS.gene96701:intron 45.0%
! GCAGCTGAAGGGATTTTTCT+TGG - chr1.1:76347068-76347087 MS.gene96701:intron 45.0%
!! TCTTCCTGCATTGGTTACTC+TGG - chr1.1:76348027-76348046 MS.gene96701:intron 45.0%
!! TGAGATTGGTCTTCCTGCAT+TGG - chr1.1:76348018-76348037 MS.gene96701:intron 45.0%
!!! CAGACACTGCTTTTTGTTGC+TGG - chr1.1:76347285-76347304 MS.gene96701:intron 45.0%
ACATTGCCACCACCCATCAA+AGG + chr1.1:76347152-76347171 None:intergenic 50.0%
ACTCTGTTGCAGACATGGCT+TGG - chr1.1:76347315-76347334 MS.gene96701:intron 50.0%
AGGTGGATCCAGTATGAGCA+GGG + chr1.1:76350480-76350499 None:intergenic 50.0%
CAAGCTACCAAGACTGACCA+TGG + chr1.1:76348602-76348621 None:intergenic 50.0%
GACAGACCTGACGAGGATTA+AGG + chr1.1:76347428-76347447 None:intergenic 50.0%
GGCCTAGGACTCTTTGTGAT+AGG - chr1.1:76347853-76347872 MS.gene96701:intron 50.0%
GGGAGCCCTACTTTCAATGT+TGG - chr1.1:76348890-76348909 MS.gene96701:intron 50.0%
GGTTAATTACTGCCGCTCCA+TGG - chr1.1:76348582-76348601 MS.gene96701:intron 50.0%
GTGTTAGGAGCTCACCTTCA+TGG - chr1.1:76346940-76346959 MS.gene96701:CDS 50.0%
TACCAAGACTGACCATGGAG+CGG + chr1.1:76348597-76348616 None:intergenic 50.0%
TGCCCCTTGAATAGCTCTCA+TGG + chr1.1:76347595-76347614 None:intergenic 50.0%
TGCTCATACTGGATCCACCT+CGG - chr1.1:76350480-76350499 MS.gene96701:CDS 50.0%
TGTTGGGTCTAACACGCGTT+GGG - chr1.1:76349677-76349696 MS.gene96701:intron 50.0%
TTGTTGGGTCTAACACGCGT+TGG - chr1.1:76349676-76349695 MS.gene96701:intron 50.0%
! CATGGTCAGTCTTGGTAGCT+TGG - chr1.1:76348600-76348619 MS.gene96701:intron 50.0%
! CTTGTTCCTTTGATGGGTGG+TGG - chr1.1:76347143-76347162 MS.gene96701:CDS 50.0%
! TGCAGACATGGCTTGGAACT+AGG - chr1.1:76347322-76347341 MS.gene96701:intron 50.0%
!!! GCTGAAATTTTGACTGCGGC+TGG - chr1.1:76348503-76348522 MS.gene96701:intron 50.0%
ACACCGCGGCTAAGTACAGA+AGG + chr1.1:76349332-76349351 None:intergenic 55.0%
ACCAGTGTCTCCCACTGTCA+CGG + chr1.1:76350696-76350715 None:intergenic 55.0%
ATGGCAGCTGGTGAAAGTGG+TGG - chr1.1:76346837-76346856 MS.gene96701:CDS 55.0%
CCACCTTCTGTACTTAGCCG+CGG - chr1.1:76349326-76349345 MS.gene96701:intron 55.0%
CCTCAACTCACCGTGACAGT+GGG - chr1.1:76350683-76350702 MS.gene96701:CDS 55.0%
CTACACAGACAGACCTGACG+AGG + chr1.1:76347435-76347454 None:intergenic 55.0%
CTGTGATGAGCAGCTTCAGC+TGG - chr1.1:76350328-76350347 MS.gene96701:CDS 55.0%
GAGGTGGATCCAGTATGAGC+AGG + chr1.1:76350481-76350500 None:intergenic 55.0%
GCTTGGAACTAGGCTTCCAG+TGG - chr1.1:76347332-76347351 MS.gene96701:intron 55.0%
GGCGTGTTCACGACTCATAG+TGG + chr1.1:76350665-76350684 None:intergenic 55.0%
GTAGGGCTCCCCCATTGAAA+TGG + chr1.1:76348881-76348900 None:intergenic 55.0%
GTCTAACACGCGTTGGGAGT+CGG - chr1.1:76349683-76349702 MS.gene96701:intron 55.0%
TACTCTGGTCATCCTCTCCC+AGG - chr1.1:76348042-76348061 MS.gene96701:intron 55.0%
TCCAGTTGCTGCGCCAAACA+AGG + chr1.1:76349481-76349500 None:intergenic 55.0%
TCTGTACTTAGCCGCGGTGT+TGG - chr1.1:76349332-76349351 MS.gene96701:intron 55.0%
TGACAGTGGGAGACACTGGT+GGG - chr1.1:76350696-76350715 MS.gene96701:CDS 55.0%
TGAGCAGCTTCAGCTGGACT+TGG - chr1.1:76350334-76350353 MS.gene96701:CDS 55.0%
! ACAAGGGGAACAGCACTGAG+AGG + chr1.1:76347823-76347842 None:intergenic 55.0%
! AGTTGCCGTACTGACCGATC+TGG - chr1.1:76348560-76348579 MS.gene96701:intron 55.0%
! CAAGGGGAACAGCACTGAGA+GGG + chr1.1:76347822-76347841 None:intergenic 55.0%
! GTTGCCGTACTGACCGATCT+GGG - chr1.1:76348561-76348580 MS.gene96701:intron 55.0%
ACCGTGACAGTGGGAGACAC+TGG - chr1.1:76350692-76350711 MS.gene96701:CDS 60.0%
CCCACTGTCACGGTGAGTTG+AGG + chr1.1:76350686-76350705 None:intergenic 60.0%
CCGCGGCTAAGTACAGAAGG+TGG + chr1.1:76349329-76349348 None:intergenic 60.0%
GCAGCTGGTGAAAGTGGTGG+TGG - chr1.1:76346840-76346859 MS.gene96701:CDS 60.0%
GCCTCAACTCACCGTGACAG+TGG - chr1.1:76350682-76350701 MS.gene96701:CDS 60.0%
GGACATGGCCCTGCTCATAC+TGG - chr1.1:76350469-76350488 MS.gene96701:intron 60.0%
GTGACAGTGGGAGACACTGG+TGG - chr1.1:76350695-76350714 MS.gene96701:CDS 60.0%
TGCCGCTCCATGGTCAGTCT+TGG - chr1.1:76348592-76348611 MS.gene96701:intron 60.0%
!! GAAAGTGGTGGTGGTGGTGG+TGG - chr1.1:76346849-76346868 MS.gene96701:CDS 60.0%
!! GCCTTGTTTGGCGCAGCAAC+TGG - chr1.1:76349477-76349496 MS.gene96701:intron 60.0%
!! GCTGGTGAAAGTGGTGGTGG+TGG - chr1.1:76346843-76346862 MS.gene96701:CDS 60.0%
!! GGTGAAAGTGGTGGTGGTGG+TGG - chr1.1:76346846-76346865 MS.gene96701:CDS 60.0%
!! TACTTAGCCGCGGTGTTGGC+TGG - chr1.1:76349336-76349355 MS.gene96701:intron 60.0%
GTACCAGCCAGCCAACACCG+CGG + chr1.1:76349346-76349365 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGTGG+AGG - chr1.1:76346852-76346871 MS.gene96701:CDS 65.0%
!! GGTGGTGGTGGAGGAGGTGG+TGG - chr1.1:76346861-76346880 MS.gene96701:CDS 70.0%
!! GGTGGTGGTGGTGGAGGAGG+TGG - chr1.1:76346858-76346877 MS.gene96701:CDS 70.0%
!! GGTGGTGGTGGTGGTGGAGG+AGG - chr1.1:76346855-76346874 MS.gene96701:CDS 70.0%
!! TAGCCGCGGTGTTGGCTGGC+TGG - chr1.1:76349340-76349359 MS.gene96701:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76346837 76350807 76346837 ID=MS.gene96701
chr1.1 mRNA 76346837 76350807 76346837 ID=MS.gene96701.t1;Parent=MS.gene96701
chr1.1 exon 76350681 76350807 76350681 ID=MS.gene96701.t1.exon1;Parent=MS.gene96701.t1
chr1.1 CDS 76350681 76350807 76350681 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76350475 76350572 76350475 ID=MS.gene96701.t1.exon2;Parent=MS.gene96701.t1
chr1.1 CDS 76350475 76350572 76350475 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76350204 76350380 76350204 ID=MS.gene96701.t1.exon3;Parent=MS.gene96701.t1
chr1.1 CDS 76350204 76350380 76350204 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76349965 76350065 76349965 ID=MS.gene96701.t1.exon4;Parent=MS.gene96701.t1
chr1.1 CDS 76349965 76350065 76349965 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76349759 76349834 76349759 ID=MS.gene96701.t1.exon5;Parent=MS.gene96701.t1
chr1.1 CDS 76349759 76349834 76349759 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76349581 76349640 76349581 ID=MS.gene96701.t1.exon6;Parent=MS.gene96701.t1
chr1.1 CDS 76349581 76349640 76349581 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76349041 76349219 76349041 ID=MS.gene96701.t1.exon7;Parent=MS.gene96701.t1
chr1.1 CDS 76349041 76349219 76349041 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76348686 76348782 76348686 ID=MS.gene96701.t1.exon8;Parent=MS.gene96701.t1
chr1.1 CDS 76348686 76348782 76348686 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76348283 76348369 76348283 ID=MS.gene96701.t1.exon9;Parent=MS.gene96701.t1
chr1.1 CDS 76348283 76348369 76348283 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76348130 76348188 76348130 ID=MS.gene96701.t1.exon10;Parent=MS.gene96701.t1
chr1.1 CDS 76348130 76348188 76348130 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76347890 76347981 76347890 ID=MS.gene96701.t1.exon11;Parent=MS.gene96701.t1
chr1.1 CDS 76347890 76347981 76347890 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76347546 76347623 76347546 ID=MS.gene96701.t1.exon12;Parent=MS.gene96701.t1
chr1.1 CDS 76347546 76347623 76347546 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76347143 76347303 76347143 ID=MS.gene96701.t1.exon13;Parent=MS.gene96701.t1
chr1.1 CDS 76347143 76347303 76347143 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
chr1.1 exon 76346837 76347055 76346837 ID=MS.gene96701.t1.exon14;Parent=MS.gene96701.t1
chr1.1 CDS 76346837 76347055 76346837 ID=cds.MS.gene96701.t1;Parent=MS.gene96701.t1
Gene Sequence

>MS.gene96701

ATGGCAGCTGGTGAAAGTGGTGGTGGTGGTGGTGGAGGAGGTGGTGGAAAAGTTGATCATTTTCAACCTCATCCTGTCAAGGAACAACTTACTGTTGATTGCTGTGTTAGGAGCTCACCTTCATGGCGTAAGTAACCCATTTTGTTGTAATTTGGTTTTCATGTAATACCCATTTTTTGTTTCTCATAAAGTTTTAAGCTTTGGTTTGTTTTTCATGTTTTTATTGCATTTGCAGCTGAAGGGATTTTTCTTGGGTTTCAACATTACATTGTTATGCTTGGAACCATTGTCATTGTTTCCACTATTCTTGTTCCTTTGATGGGTGGTGGCAATGTAATAATCAACTTTTTTTTTTAACTTTTTCTTCATTTTGTTTGGATTTGAAACTCAGTTTTTAATTTTGTTATGTTTTGAGGGAAAACTGTAGGTGGAAAAAGCTGAAATGATTCAGACACTGCTTTTTGTTGCTGGAATCAACACTCTGTTGCAGACATGGCTTGGAACTAGGCTTCCAGTGGTTATAGGAGCATCTTTTGCTTTTCTTATTCCAGCTATTTCTGTGGCATTCTCTTCTAGAATGAGTGTATTCCTTAATCCTCGTCAGGTCTGTCTGTGTAGTGTAACCATGCTGTTGTAGTTGTACATTAGCTTTCTTTACATAGATTGTTTACTTGGAAATGAATAGTTTTCATTAGCTTGGAGAATACTGTTAATTTGTTGTGTTCTTGGTTTCATTTTTCAGAGGTTTAAGCAATCCATGAGAGCTATTCAAGGGGCATTGCTTATTGCTTCCTTTGTTCAAGGAATGATTGGATTTTTTGGATTCTGGGGAATTTTTGGAAGGTAGAATATGCATATGAAATTTGATAGTGTCTTTTAATGCATTTGGCTTCTTTGATGAAATCAGTTCTAGTTTTGGTAGTAGAATAACTCAAGTACTCAATTATATTTGATGTATTTATTCATATTGCAGGTTTTTAAGCCCTCTCAGTGCTGTTCCCCTTGTAACTCTAACTGGCCTAGGACTCTTTGTGATAGGGTTTCCAAGGGTAAACACATTTCTCTCCTTTTTTTATATATTTTTATGGCTATTCGTGCTAAATATCTTTCACCTAATGATCATTTATTTAACAAACATACTCTTTTGGTTTACTGTGATTCCTGTAGTTGGCAGATTGTGTTGAGATTGGTCTTCCTGCATTGGTTACTCTGGTCATCCTCTCCCAGGTATGTTACTTTATTTACCCCTCTATCTCATTCAACATCTTTAATTAAGTCCTTTTGAAATATTTGTGTAGCAACAATTTAACAAAACAGAAAATACAAGCTCTCATTTTTTTAGCATATTATACCAACTCTTACCTTGTAATTTACTCAGTGATATGTTAGACATGCTTCTATGTGACATTTATATCTGTGTAATTTCACTTGACTTAGCGTCTCTTGAATAAAAAAATTAAAGTAAGAGATTTGAATGGTGGTTATGCAAGAAAATTTAAATCTTATTTGTGCATGTAATATATGAAAACAGCTCAACTTTTGAAATTGATGTTCTTTCCACTTTTTGGTTAAACCAATGTCGTTGCAGTACATTCCACAAAAGATTAAATCAAGAGGAGTCGACCGATTTGCAGTCATAGTCACGATTGGAATTGCATGGGGATTTGCTGAAATTTTGACTGCGGCTGGTGCATACAACAAAAGACCACTGAGTACTCAATTCAGTTGCCGTACTGACCGATCTGGGTTAATTACTGCCGCTCCATGGTCAGTCTTGGTAGCTTGGCTTTGTTTTCTATAGTCATTCAGTGCTCACAAACAATTTCAATGTGTAAAATTTTTTTGTGACGTAATAGATGATATCTTAGGCTCCAAAGCATCAAACTAGGCAGAGAGATATTATGTTTACAACTAAATATTATTGGGAGCTGAATATGTTCATTGCACCTCTGACTTCTTTGTGGCATGTATCCATTTGAATTAGCTTTCTCTACATTTGAATTAGCTTTCTGTACATCTATGCAGGATAAGAGTTCCGTATCCATTTCAATGGGGGAGCCCTACTTTCAATGTTGGTGATATTTTTGCAATGATTGCTGCTTCTCTTGTTGCAATTGTAGAGGTTTGTTTTAATATTTCATTTTCTTTATAAATATAGACTAACTTGTGTGGGGATCGGTGTTATACATTTTCGGCTATAACGATCATAGTAACAATATTTTGTATATGACAAAGTGTGCCATGATCAATATGACATTGTGGACTAGACATTTTGAGTTGCAAAAGTTCTGTGTGAATTGTGAACAATCATGTTCTTTTTTATATCCGAATATTGTAATCTGGCTATTTCTAAGTAGAAGGTATATGTTTAATTTTTAGTTTCCATTTGGTTATACTTTGATATTATTAATTTTACCCTTTTCAATCTCTTGTAACAGTCAACTGGGACATTCATCGCTGCATCAAGATTTGGCGGTGCAACACATATGCCACCTTCTGTACTTAGCCGCGGTGTTGGCTGGCTGGTACTATATATTTTTTTTTTTTTTTTTTATACATTTACAATTTATTTATCACTTCTTGAGAATTAGACTCATGTGTTGAAGTTTGATGATTTAGGGTATAGGCACTCTTCTGGATGCCTTGTTTGGCGCAGCAACTGGATCCACCGCATCAGTGTACATTTTGTTGCCCTCTTCTCACTACCTATTGTCAAATAGTTCTTAGGCTATATTCTTGATTGTTATTAAGTGTCTTTGACCTTGGATAATTTGTTTTTTACTATTGCTTGTTGAGTATATTAATGACATTTGTCTTTCCTTTTAGTCAAAATGCAGGATTGTTGGGTCTAACACGCGTTGGGAGTCGGAGAGTCATTCAAATATCAGCTGGATTCATGCTTTTCTTCTCTATATTTGGTAGTACATTTCATTCCCTTCTGTGAATTTCTGAGTATTCTGATGTATTATTATTGATAAAAGTGAAACACTTTTCATGTGTTTGTATGAAACAATTTGTTCATTCCTATGGCTTCGTTGGAATATCTGAATAAGTGAAACAGAATGAAACAAAATAAAATGACCACAACATTGTTCTCACATTTATGAATAAGTGATTAAAACTTAAACTAACTTGTCTTTACATGTGTGCCTAATTACTTACTGTATCCGGGTTTATAAATCAGGTAAATTTGGAGCAGTGATTGCTGCAATACCATTGCCAATAATAGCAGCCGTGTATTGTGTTCTCTTTGCATATGTCGGTATGTATTTACAAAAAACAGATAATTTCATATCACTTAGAGATAATTTTATCATCCTTATGTTGGTCTGCGAGAACTGAGAATTTGATGAACTAGAAACCAAAAAACAAATAAGTGATTTCGATGAAACTTGACATGTAAAATGTATTTACAATACTATTTTCATGCAATACATTGTTTTGTTCCTTTAAAATGTCAAATTCTTTCTGATTTGAATGTCATGTTTCTTCTGTGATGAGCAGCTTCAGCTGGACTTGGTTTTCTTCAGTTCTGCAATCTAAACAGCTACAGATCAATGTTCATCGTTGGCTTTTCTCTCTTCATAGGTCTATCTGTTCCACAATATTTCCTCGAATATCTCACACTATCTGGACATGGCCCTGCTCATACTGGATCCACCTCGGTACATATATATCTTAGACAACAAGTTTCCTCTTGCTATAAGTATAACCATCTTTGATTCTTATTTTGATTTTCTCACAATATGCAGTTCAACAATATAGTGCAAGTGATTTTCTCATCTGCAGCAACTGTTGCAATTATAGTTGCTTACTTCTTGGATGCCACTATGAGTCGTGAACACGCCTCAACTCACCGTGACAGTGGGAGACACTGGTGGGAAAAATTTAGGACCTTCAATCAGGATATCAGAAGTGATGAGTTCTATGGATTGCCTATGAATCTGAACAGATTTTTCCCTTCAGCCTAA

Protein sequence

>MS.gene96701.t1

MAAGESGGGGGGGGGGKVDHFQPHPVKEQLTVDCCVRSSPSWPEGIFLGFQHYIVMLGTIVIVSTILVPLMGGGNVEKAEMIQTLLFVAGINTLLQTWLGTRLPVVIGASFAFLIPAISVAFSSRMSVFLNPRQRFKQSMRAIQGALLIASFVQGMIGFFGFWGIFGRFLSPLSAVPLVTLTGLGLFVIGFPRLADCVEIGLPALVTLVILSQYIPQKIKSRGVDRFAVIVTIGIAWGFAEILTAAGAYNKRPLSTQFSCRTDRSGLITAAPWIRVPYPFQWGSPTFNVGDIFAMIAASLVAIVESTGTFIAASRFGGATHMPPSVLSRGVGWLGIGTLLDALFGAATGSTASVQNAGLLGLTRVGSRRVIQISAGFMLFFSIFGKFGAVIAAIPLPIIAAVYCVLFAYVASAGLGFLQFCNLNSYRSMFIVGFSLFIGLSVPQYFLEYLTLSGHGPAHTGSTSFNNIVQVIFSSAATVAIIVAYFLDATMSREHASTHRDSGRHWWEKFRTFNQDIRSDEFYGLPMNLNRFFPSA