Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011311.t1 | XP_013457775.1 | 97.4 | 349 | 9 | 0 | 1 | 349 | 1 | 349 | 9.40E-183 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011311.t1 | A2RVM0 | 43.3 | 326 | 177 | 2 | 21 | 346 | 5 | 322 | 2.0e-64 | 247.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011311.t1 | A0A072UR37 | 97.4 | 349 | 9 | 0 | 1 | 349 | 1 | 349 | 6.8e-183 | 649.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011311 | MS.gene49117 | PPI |
| MS.gene011311 | MS.gene061158 | PPI |
| MS.gene011311 | MS.gene49120 | PPI |
| MS.gene011311 | MS.gene34138 | PPI |
| MS.gene011311 | MS.gene34141 | PPI |
| MS.gene011311 | MS.gene006265 | PPI |
| MS.gene011311 | MS.gene006264 | PPI |
| MS.gene011311 | MS.gene061157 | PPI |
| MS.gene011311 | MS.gene34140 | PPI |
| MS.gene011311 | MS.gene061155 | PPI |
| MS.gene006263 | MS.gene011311 | PPI |
| MS.gene011311 | MS.gene49118 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011311.t1 | MTR_4g105310 | 97.421 | 349 | 9 | 0 | 1 | 349 | 1 | 349 | 0.0 | 696 |
| MS.gene011311.t1 | MTR_3g077410 | 83.841 | 328 | 53 | 0 | 12 | 339 | 1 | 328 | 0.0 | 577 |
| MS.gene011311.t1 | MTR_4g105310 | 97.358 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 0.0 | 529 |
| MS.gene011311.t1 | MTR_8g099995 | 54.114 | 316 | 141 | 2 | 12 | 325 | 1 | 314 | 3.73e-121 | 353 |
| MS.gene011311.t1 | MTR_7g099850 | 48.916 | 323 | 160 | 3 | 12 | 333 | 1 | 319 | 2.81e-102 | 304 |
| MS.gene011311.t1 | MTR_1g068970 | 48.137 | 322 | 163 | 2 | 12 | 333 | 1 | 318 | 8.34e-102 | 303 |
| MS.gene011311.t1 | MTR_8g098415 | 45.130 | 308 | 165 | 2 | 18 | 325 | 2 | 305 | 3.76e-90 | 273 |
| MS.gene011311.t1 | MTR_8g098415 | 44.444 | 315 | 171 | 2 | 18 | 332 | 2 | 312 | 3.84e-90 | 273 |
| MS.gene011311.t1 | MTR_6g053550 | 47.742 | 310 | 157 | 2 | 25 | 332 | 17 | 323 | 5.40e-90 | 273 |
| MS.gene011311.t1 | MTR_1g100395 | 46.795 | 312 | 162 | 2 | 24 | 335 | 8 | 315 | 1.01e-89 | 272 |
| MS.gene011311.t1 | MTR_1g100305 | 43.910 | 312 | 171 | 2 | 24 | 335 | 8 | 315 | 1.20e-84 | 259 |
| MS.gene011311.t1 | MTR_1g100335 | 44.231 | 312 | 170 | 2 | 24 | 335 | 8 | 315 | 2.05e-83 | 256 |
| MS.gene011311.t1 | MTR_1g100315 | 43.269 | 312 | 173 | 2 | 24 | 335 | 8 | 315 | 4.84e-82 | 252 |
| MS.gene011311.t1 | MTR_1g068970 | 44.841 | 252 | 138 | 1 | 82 | 333 | 1 | 251 | 3.36e-72 | 225 |
| MS.gene011311.t1 | MTR_6g053600 | 45.660 | 265 | 139 | 3 | 26 | 288 | 4 | 265 | 4.98e-69 | 218 |
| MS.gene011311.t1 | MTR_8g098415 | 42.972 | 249 | 141 | 1 | 77 | 325 | 1 | 248 | 3.09e-68 | 215 |
| MS.gene011311.t1 | MTR_1g100335 | 46.774 | 248 | 129 | 1 | 24 | 271 | 8 | 252 | 1.29e-65 | 209 |
| MS.gene011311.t1 | MTR_1g100335 | 45.968 | 248 | 130 | 2 | 24 | 271 | 8 | 251 | 2.04e-65 | 208 |
| MS.gene011311.t1 | MTR_8g098415 | 47.489 | 219 | 112 | 1 | 18 | 236 | 2 | 217 | 1.95e-61 | 196 |
| MS.gene011311.t1 | MTR_8g022500 | 51.200 | 125 | 36 | 1 | 39 | 163 | 417 | 516 | 4.96e-29 | 117 |
| MS.gene011311.t1 | MTR_3g009190 | 29.508 | 305 | 192 | 8 | 45 | 332 | 59 | 357 | 6.99e-28 | 112 |
| MS.gene011311.t1 | MTR_3g009190 | 29.508 | 305 | 192 | 8 | 45 | 332 | 77 | 375 | 8.32e-28 | 112 |
| MS.gene011311.t1 | MTR_6g453040 | 29.180 | 305 | 193 | 8 | 45 | 332 | 37 | 335 | 1.48e-27 | 111 |
| MS.gene011311.t1 | MTR_3g091070 | 30.263 | 304 | 171 | 9 | 46 | 332 | 38 | 317 | 2.16e-27 | 110 |
| MS.gene011311.t1 | MTR_6g041980 | 29.730 | 259 | 167 | 6 | 52 | 309 | 70 | 314 | 1.23e-25 | 105 |
| MS.gene011311.t1 | MTR_3g009190 | 29.252 | 294 | 185 | 8 | 56 | 332 | 69 | 356 | 1.35e-24 | 103 |
| MS.gene011311.t1 | MTR_6g081020 | 28.481 | 316 | 186 | 10 | 40 | 328 | 51 | 353 | 2.40e-23 | 100 |
| MS.gene011311.t1 | MTR_2g079710 | 28.076 | 317 | 186 | 12 | 50 | 332 | 88 | 396 | 1.00e-20 | 92.8 |
| MS.gene011311.t1 | MTR_6g041980 | 28.804 | 184 | 124 | 2 | 52 | 235 | 70 | 246 | 1.18e-18 | 85.1 |
| MS.gene011311.t1 | MTR_3g098470 | 28.912 | 294 | 151 | 11 | 51 | 308 | 37 | 308 | 1.28e-16 | 79.7 |
| MS.gene011311.t1 | MTR_6g453040 | 30.693 | 202 | 125 | 4 | 45 | 235 | 59 | 256 | 1.65e-16 | 79.3 |
| MS.gene011311.t1 | MTR_1g051165 | 31.651 | 218 | 113 | 7 | 52 | 256 | 20 | 214 | 7.45e-16 | 77.4 |
| MS.gene011311.t1 | MTR_4g058840 | 30.622 | 209 | 122 | 6 | 52 | 256 | 17 | 206 | 1.70e-15 | 76.3 |
| MS.gene011311.t1 | MTR_4g058820 | 30.622 | 209 | 122 | 6 | 52 | 256 | 17 | 206 | 1.70e-15 | 76.3 |
| MS.gene011311.t1 | MTR_4g087460 | 27.000 | 300 | 171 | 7 | 51 | 316 | 24 | 309 | 3.45e-14 | 72.8 |
| MS.gene011311.t1 | MTR_7g076660 | 27.907 | 301 | 138 | 12 | 51 | 303 | 10 | 279 | 3.72e-14 | 72.4 |
| MS.gene011311.t1 | MTR_7g076660 | 27.907 | 301 | 138 | 12 | 51 | 303 | 9 | 278 | 4.09e-14 | 72.4 |
| MS.gene011311.t1 | MTR_8g031610 | 26.433 | 314 | 154 | 11 | 47 | 308 | 3 | 291 | 4.66e-14 | 72.0 |
| MS.gene011311.t1 | MTR_6g453040 | 30.851 | 188 | 115 | 4 | 45 | 221 | 59 | 242 | 3.29e-13 | 68.9 |
| MS.gene011311.t1 | MTR_5g062280 | 24.920 | 313 | 163 | 11 | 47 | 310 | 5 | 294 | 4.88e-13 | 69.3 |
| MS.gene011311.t1 | MTR_8g031630 | 25.321 | 312 | 153 | 11 | 51 | 308 | 9 | 294 | 3.71e-12 | 66.6 |
| MS.gene011311.t1 | MTR_8g031650 | 25.163 | 306 | 149 | 11 | 52 | 303 | 104 | 383 | 1.63e-11 | 65.5 |
| MS.gene011311.t1 | MTR_8g089575 | 34.965 | 143 | 84 | 3 | 51 | 189 | 50 | 187 | 1.72e-11 | 64.7 |
| MS.gene011311.t1 | MTR_7g076655 | 26.370 | 292 | 154 | 11 | 51 | 303 | 9 | 278 | 1.75e-11 | 64.3 |
| MS.gene011311.t1 | MTR_8g031650 | 25.769 | 260 | 129 | 8 | 51 | 256 | 9 | 258 | 3.06e-11 | 65.1 |
| MS.gene011311.t1 | MTR_8g031650 | 25.163 | 306 | 149 | 11 | 52 | 303 | 270 | 549 | 3.14e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011311.t1 | AT5G50130 | 72.404 | 337 | 91 | 2 | 12 | 347 | 1 | 336 | 3.83e-175 | 490 |
| MS.gene011311.t1 | AT5G50130 | 71.284 | 296 | 85 | 0 | 52 | 347 | 7 | 302 | 7.87e-153 | 432 |
| MS.gene011311.t1 | AT5G50130 | 76.619 | 278 | 63 | 2 | 12 | 288 | 1 | 277 | 1.29e-151 | 430 |
| MS.gene011311.t1 | AT5G50130 | 71.044 | 297 | 85 | 1 | 52 | 347 | 7 | 303 | 2.53e-151 | 428 |
| MS.gene011311.t1 | AT5G50130 | 76.344 | 279 | 63 | 3 | 12 | 288 | 1 | 278 | 3.83e-150 | 426 |
| MS.gene011311.t1 | AT5G50130 | 76.265 | 257 | 60 | 1 | 12 | 268 | 1 | 256 | 1.88e-140 | 399 |
| MS.gene011311.t1 | AT5G50130 | 75.969 | 258 | 60 | 2 | 12 | 268 | 1 | 257 | 5.65e-139 | 395 |
| MS.gene011311.t1 | AT5G50130 | 75.630 | 238 | 57 | 1 | 52 | 288 | 7 | 244 | 5.15e-128 | 369 |
| MS.gene011311.t1 | AT5G50130 | 75.314 | 239 | 57 | 2 | 52 | 288 | 7 | 245 | 1.61e-126 | 365 |
| MS.gene011311.t1 | AT4G24050 | 54.747 | 316 | 138 | 2 | 12 | 325 | 1 | 313 | 1.07e-121 | 354 |
| MS.gene011311.t1 | AT1G64590 | 53.293 | 334 | 141 | 3 | 12 | 333 | 1 | 331 | 4.84e-106 | 314 |
| MS.gene011311.t1 | AT4G24050 | 53.763 | 279 | 122 | 3 | 12 | 288 | 1 | 274 | 2.89e-101 | 300 |
| MS.gene011311.t1 | AT2G37540 | 47.604 | 313 | 160 | 2 | 14 | 326 | 2 | 310 | 3.00e-94 | 284 |
| MS.gene011311.t1 | AT5G02540 | 48.632 | 329 | 165 | 2 | 14 | 342 | 2 | 326 | 3.63e-94 | 284 |
| MS.gene011311.t1 | AT4G23420 | 43.631 | 314 | 174 | 1 | 18 | 331 | 2 | 312 | 2.76e-87 | 266 |
| MS.gene011311.t1 | AT4G23420 | 43.631 | 314 | 174 | 1 | 18 | 331 | 2 | 312 | 2.76e-87 | 266 |
| MS.gene011311.t1 | AT4G23430 | 42.857 | 329 | 180 | 2 | 18 | 346 | 2 | 322 | 1.21e-86 | 265 |
| MS.gene011311.t1 | AT4G23420 | 44.118 | 306 | 168 | 1 | 26 | 331 | 27 | 329 | 5.58e-86 | 263 |
| MS.gene011311.t1 | AT4G11410 | 45.695 | 302 | 160 | 2 | 24 | 325 | 8 | 305 | 9.43e-85 | 259 |
| MS.gene011311.t1 | AT4G23430 | 43.161 | 329 | 177 | 4 | 18 | 346 | 2 | 320 | 1.58e-84 | 259 |
| MS.gene011311.t1 | AT4G23430 | 40.122 | 329 | 179 | 3 | 18 | 346 | 2 | 312 | 5.69e-76 | 237 |
| MS.gene011311.t1 | AT2G37540 | 48.980 | 245 | 122 | 1 | 14 | 258 | 2 | 243 | 1.38e-74 | 231 |
| MS.gene011311.t1 | AT4G23430 | 40.426 | 329 | 176 | 5 | 18 | 346 | 2 | 310 | 9.28e-74 | 231 |
| MS.gene011311.t1 | AT4G11410 | 46.341 | 246 | 129 | 1 | 24 | 269 | 8 | 250 | 3.40e-69 | 218 |
| MS.gene011311.t1 | AT4G23420 | 43.182 | 264 | 147 | 1 | 18 | 281 | 2 | 262 | 6.13e-69 | 217 |
| MS.gene011311.t1 | AT4G23420 | 46.444 | 239 | 125 | 1 | 18 | 256 | 2 | 237 | 1.13e-67 | 214 |
| MS.gene011311.t1 | AT4G09750 | 29.021 | 286 | 183 | 6 | 31 | 309 | 19 | 291 | 2.67e-28 | 112 |
| MS.gene011311.t1 | AT4G27760 | 31.847 | 314 | 180 | 10 | 42 | 332 | 49 | 351 | 7.63e-26 | 107 |
| MS.gene011311.t1 | AT5G53090 | 31.310 | 313 | 181 | 10 | 43 | 332 | 49 | 350 | 1.42e-24 | 103 |
| MS.gene011311.t1 | AT5G15940 | 29.667 | 300 | 186 | 8 | 52 | 333 | 63 | 355 | 4.25e-24 | 102 |
| MS.gene011311.t1 | AT5G15940 | 29.667 | 300 | 186 | 8 | 52 | 333 | 64 | 356 | 4.52e-24 | 102 |
| MS.gene011311.t1 | AT5G15940 | 29.667 | 300 | 186 | 8 | 52 | 333 | 64 | 356 | 4.52e-24 | 102 |
| MS.gene011311.t1 | AT5G04070 | 29.967 | 307 | 183 | 11 | 52 | 338 | 62 | 356 | 9.15e-24 | 100 |
| MS.gene011311.t1 | AT1G03630 | 29.430 | 316 | 182 | 12 | 50 | 332 | 89 | 396 | 3.31e-23 | 99.8 |
| MS.gene011311.t1 | AT1G03630 | 29.430 | 316 | 182 | 12 | 50 | 332 | 91 | 398 | 3.34e-23 | 100 |
| MS.gene011311.t1 | AT5G54190 | 26.433 | 314 | 191 | 12 | 52 | 332 | 96 | 402 | 7.21e-23 | 99.0 |
| MS.gene011311.t1 | AT5G53100 | 29.773 | 309 | 184 | 9 | 47 | 332 | 43 | 341 | 2.09e-22 | 97.1 |
| MS.gene011311.t1 | AT5G15940 | 30.916 | 262 | 156 | 8 | 52 | 295 | 64 | 318 | 3.60e-22 | 95.9 |
| MS.gene011311.t1 | AT4G27440 | 28.662 | 314 | 184 | 12 | 52 | 332 | 92 | 398 | 4.56e-22 | 96.7 |
| MS.gene011311.t1 | AT4G27440 | 28.662 | 314 | 184 | 12 | 52 | 332 | 92 | 398 | 4.56e-22 | 96.7 |
| MS.gene011311.t1 | AT3G46170 | 26.829 | 287 | 173 | 10 | 28 | 303 | 11 | 271 | 5.01e-16 | 77.8 |
| MS.gene011311.t1 | AT1G63380 | 28.571 | 238 | 139 | 8 | 29 | 259 | 8 | 221 | 4.24e-15 | 75.1 |
| MS.gene011311.t1 | AT3G55290 | 32.394 | 213 | 119 | 8 | 52 | 259 | 24 | 216 | 8.01e-15 | 74.3 |
| MS.gene011311.t1 | AT3G55290 | 32.394 | 213 | 119 | 8 | 52 | 259 | 23 | 215 | 8.14e-15 | 74.3 |
| MS.gene011311.t1 | AT5G61830 | 25.256 | 293 | 166 | 8 | 51 | 308 | 39 | 313 | 8.35e-15 | 74.7 |
| MS.gene011311.t1 | AT5G61830 | 25.256 | 293 | 166 | 8 | 51 | 308 | 39 | 313 | 8.35e-15 | 74.7 |
| MS.gene011311.t1 | AT1G63380 | 28.879 | 232 | 134 | 8 | 35 | 259 | 9 | 216 | 1.86e-14 | 73.2 |
| MS.gene011311.t1 | AT1G63380 | 28.879 | 232 | 134 | 8 | 35 | 259 | 7 | 214 | 2.10e-14 | 73.2 |
| MS.gene011311.t1 | AT1G63380 | 28.879 | 232 | 134 | 8 | 35 | 259 | 11 | 218 | 2.16e-14 | 73.2 |
| MS.gene011311.t1 | AT3G55310 | 31.466 | 232 | 127 | 9 | 35 | 259 | 9 | 215 | 2.61e-14 | 72.8 |
| MS.gene011311.t1 | AT1G62610 | 29.310 | 232 | 133 | 9 | 35 | 259 | 11 | 218 | 8.05e-14 | 71.2 |
| MS.gene011311.t1 | AT1G62610 | 29.694 | 229 | 130 | 9 | 35 | 256 | 7 | 211 | 8.55e-14 | 71.2 |
| MS.gene011311.t1 | AT1G62610 | 29.694 | 229 | 130 | 9 | 35 | 256 | 5 | 209 | 8.77e-14 | 71.2 |
| MS.gene011311.t1 | AT1G62610 | 29.694 | 229 | 130 | 9 | 35 | 256 | 6 | 210 | 8.78e-14 | 71.2 |
| MS.gene011311.t1 | AT3G03980 | 29.114 | 237 | 125 | 9 | 37 | 254 | 1 | 213 | 1.29e-12 | 67.8 |
Find 52 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTGCAGGGCCTAGTGGTTT+TGG | 0.230469 | 8.2:-19598381 | MS.gene011311:CDS |
| ACACTTACATGAGAATATTA+AGG | 0.272671 | 8.2:+19597858 | None:intergenic |
| GAAGGGAACAATAAGGTATT+TGG | 0.288975 | 8.2:-19598409 | MS.gene011311:CDS |
| TGGTTGGCAACAAAAGAAAA+AGG | 0.290146 | 8.2:-19598443 | MS.gene011311:CDS |
| TCAATTGAAGGTGCTACTTC+TGG | 0.308401 | 8.2:-19598085 | MS.gene011311:intron |
| AGGTATTTGGCAGGCATTGC+AGG | 0.316972 | 8.2:-19598396 | MS.gene011311:CDS |
| TTATGCTGAGGTTATTCTAT+TGG | 0.355615 | 8.2:-19597948 | MS.gene011311:CDS |
| ATGAGAGCTGTTAGGTTTGA+AGG | 0.360069 | 8.2:+19598309 | None:intergenic |
| GAAGGTGCTACTTCTGGTAT+TGG | 0.364873 | 8.2:-19598079 | MS.gene011311:intron |
| TGGTGCCAGGGACATGAAAA+AGG | 0.383783 | 8.2:-19598008 | MS.gene011311:CDS |
| TTTCTTCAGTAATTCATAGC+TGG | 0.397861 | 8.2:-19595930 | MS.gene011311:CDS |
| CGACTTAGACAAGCAGCAAT+TGG | 0.406522 | 8.2:-19595047 | MS.gene011311:CDS |
| GCAAATAAAACAGGCATTCA+AGG | 0.411603 | 8.2:-19595967 | MS.gene011311:CDS |
| TGAGAGTTGTGGTTGGTGCC+AGG | 0.429651 | 8.2:-19598021 | MS.gene011311:CDS |
| TTCTTCAGTAATTCATAGCT+GGG | 0.432368 | 8.2:-19595929 | MS.gene011311:CDS |
| CAGCATAAGGACTCTCCTCT+TGG | 0.434439 | 8.2:+19597963 | None:intergenic |
| ATTCCTGTCTTCACAATGCC+TGG | 0.434455 | 8.2:+19595507 | None:intergenic |
| CATCGATGAAGGGAACAATA+AGG | 0.437595 | 8.2:-19598416 | MS.gene011311:CDS |
| TTCCTTCACATGCAGAATCA+TGG | 0.450116 | 8.2:+19595714 | None:intergenic |
| ATAGATACTGCAAATAAAAC+AGG | 0.452810 | 8.2:-19595976 | MS.gene011311:CDS |
| ACATTTGCTACAAATTACTT+AGG | 0.455021 | 8.2:-19597477 | MS.gene011311:intron |
| GCACACAAGGGCTTAATAAC+GGG | 0.462839 | 8.2:-19595477 | MS.gene011311:intron |
| CACTTACATGAGAATATTAA+GGG | 0.464360 | 8.2:+19597859 | None:intergenic |
| AATAGAATAACCTCAGCATA+AGG | 0.472498 | 8.2:+19597950 | None:intergenic |
| AGCACACAAGGGCTTAATAA+CGG | 0.480180 | 8.2:-19595478 | MS.gene011311:CDS |
| TACCAGTGATGAGAGCTGTT+AGG | 0.489625 | 8.2:+19598301 | None:intergenic |
| TGCTTTAAAGACATGCTCAC+TGG | 0.492898 | 8.2:-19595889 | MS.gene011311:CDS |
| GGAAATGGCTAGACAACTAA+AGG | 0.519535 | 8.2:-19595695 | MS.gene011311:intron |
| TGAGAGCTGTTAGGTTTGAA+GGG | 0.521862 | 8.2:+19598310 | None:intergenic |
| AGATACATGGTCTAGAATAG+AGG | 0.530017 | 8.2:+19595012 | None:intergenic |
| GATTCTGCATGTGAAGGAAA+TGG | 0.534551 | 8.2:-19595710 | MS.gene011311:CDS |
| AACCTAACAGCTCTCATCAC+TGG | 0.543509 | 8.2:-19598303 | MS.gene011311:intron |
| ACTATCAATGCAGTGCATCC+AGG | 0.545366 | 8.2:-19595525 | MS.gene011311:CDS |
| CATCCAGGCATTGTGAAGAC+AGG | 0.549477 | 8.2:-19595510 | MS.gene011311:CDS |
| GAGAGTTGTGGTTGGTGCCA+GGG | 0.563988 | 8.2:-19598020 | MS.gene011311:CDS |
| GAATTTGAGCCAAAACCACT+AGG | 0.566141 | 8.2:+19598372 | None:intergenic |
| GCAGGCATTGCAGGGCCTAG+TGG | 0.577354 | 8.2:-19598387 | MS.gene011311:CDS |
| GATACATGGTCTAGAATAGA+GGG | 0.578220 | 8.2:+19595013 | None:intergenic |
| GGTATTTGGCAGGCATTGCA+GGG | 0.578276 | 8.2:-19598395 | MS.gene011311:CDS |
| GAGCTGTTAGGTTTGAAGGG+AGG | 0.584163 | 8.2:+19598313 | None:intergenic |
| AGCCATGATTCTGCATGTGA+AGG | 0.585391 | 8.2:-19595716 | MS.gene011311:CDS |
| AGGAATTATTAGAGCACACA+AGG | 0.596908 | 8.2:-19595490 | MS.gene011311:CDS |
| GGAACAATAAGGTATTTGGC+AGG | 0.598423 | 8.2:-19598405 | MS.gene011311:CDS |
| AAAAGGGAATCATCGATGAA+GGG | 0.604378 | 8.2:-19598426 | MS.gene011311:CDS |
| AGTTGGAGGACACGAATGGT+TGG | 0.604406 | 8.2:-19598459 | None:intergenic |
| GCTGCTCAAAACGATATCAC+AGG | 0.618153 | 8.2:-19595328 | MS.gene011311:intron |
| AGGAGTGTACTCTCATAACC+TGG | 0.628213 | 8.2:-19597526 | MS.gene011311:CDS |
| ATGCACGGTGTCTAGATACA+TGG | 0.629660 | 8.2:+19594999 | None:intergenic |
| AGAGGAGTGAGAGTTGTGGT+TGG | 0.631623 | 8.2:-19598028 | MS.gene011311:CDS |
| AGAGGAGAGTCCTTATGCTG+AGG | 0.678257 | 8.2:-19597960 | MS.gene011311:CDS |
| ACTTACATGAGAATATTAAG+GGG | 0.701725 | 8.2:+19597860 | None:intergenic |
| GGAATTATTAGAGCACACAA+GGG | 0.746983 | 8.2:-19595489 | MS.gene011311:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAAAAACTAAAGTAA+TGG | - | chr8.2:19596939-19596958 | MS.gene011311:intron | 10.0% |
| !!! | ACTAATATTTTTTTGAATAT+TGG | - | chr8.2:19597875-19597894 | MS.gene011311:CDS | 10.0% |
| !!! | ATGAAATTTTTGAAAATATA+TGG | + | chr8.2:19598077-19598096 | None:intergenic | 10.0% |
| !!! | CTAATATTTTTTTGAATATT+GGG | - | chr8.2:19597876-19597895 | MS.gene011311:CDS | 10.0% |
| !!! | TACATTTTTGAATATTATTT+TGG | + | chr8.2:19596634-19596653 | None:intergenic | 10.0% |
| !!! | TGCATTAATTAATTAAATTT+TGG | - | chr8.2:19597646-19597665 | MS.gene011311:intron | 10.0% |
| !! | TTAATGTATTATTCATACAT+AGG | + | chr8.2:19596861-19596880 | None:intergenic | 15.0% |
| !!! | AATGAATATATGTTTTGTTT+TGG | - | chr8.2:19595341-19595360 | MS.gene011311:CDS | 15.0% |
| !!! | TACAAAGAGAAATATTTTAA+CGG | + | chr8.2:19596419-19596438 | None:intergenic | 15.0% |
| !!! | TTGTTTCAAACAATTTTATA+TGG | - | chr8.2:19598036-19598055 | MS.gene011311:CDS | 15.0% |
| !! | AACAAAAATGTAGTTACAAT+GGG | - | chr8.2:19597689-19597708 | MS.gene011311:intron | 20.0% |
| !! | ATTGTTAATTCATATAGTTG+TGG | + | chr8.2:19597137-19597156 | None:intergenic | 20.0% |
| !! | CATGAAGTATAGTAAAAATT+AGG | - | chr8.2:19596814-19596833 | MS.gene011311:intron | 20.0% |
| !! | GAATATTGGGAAATAATTAT+AGG | - | chr8.2:19597889-19597908 | MS.gene011311:CDS | 20.0% |
| !! | GTCATATCATATATGATTAA+GGG | - | chr8.2:19597830-19597849 | MS.gene011311:intron | 20.0% |
| !! | TAACAAAAATGTAGTTACAA+TGG | - | chr8.2:19597688-19597707 | MS.gene011311:intron | 20.0% |
| !! | TGTCATATCATATATGATTA+AGG | - | chr8.2:19597829-19597848 | MS.gene011311:intron | 20.0% |
| !! | TTGAAAATATATGGCTTAAT+TGG | + | chr8.2:19598068-19598087 | None:intergenic | 20.0% |
| !!! | AACATTTTTGAAAGCTAATT+TGG | - | chr8.2:19597261-19597280 | MS.gene011311:intron | 20.0% |
| !!! | AATTTGTTTGAATTAGAAGA+AGG | - | chr8.2:19597323-19597342 | MS.gene011311:intron | 20.0% |
| !!! | CTAATTTTTACTATACTTCA+TGG | + | chr8.2:19596816-19596835 | None:intergenic | 20.0% |
| ! | AAATATTAAGGCAATTTGAG+AGG | + | chr8.2:19597802-19597821 | None:intergenic | 25.0% |
| ! | AAGCATAAGAAATGACAATA+AGG | + | chr8.2:19595641-19595660 | None:intergenic | 25.0% |
| ! | ACACAATATAATCACAATTG+AGG | + | chr8.2:19595768-19595787 | None:intergenic | 25.0% |
| ! | ACACTTACATGAGAATATTA+AGG | + | chr8.2:19595599-19595618 | None:intergenic | 25.0% |
| ! | ACTTACATGAGAATATTAAG+GGG | + | chr8.2:19595597-19595616 | None:intergenic | 25.0% |
| ! | ATAGATACTGCAAATAAAAC+AGG | - | chr8.2:19597478-19597497 | MS.gene011311:CDS | 25.0% |
| ! | ATTCGTAAAATATAACGAGT+TGG | - | chr8.2:19597062-19597081 | MS.gene011311:intron | 25.0% |
| ! | ATTGTGATTATATTGTGTTG+TGG | - | chr8.2:19595770-19595789 | MS.gene011311:intron | 25.0% |
| ! | CACTTACATGAGAATATTAA+GGG | + | chr8.2:19595598-19595617 | None:intergenic | 25.0% |
| ! | GAAGATAAGTTCAATATGTT+AGG | + | chr8.2:19596323-19596342 | None:intergenic | 25.0% |
| ! | GTCTTTAACACATTGTTTAA+GGG | + | chr8.2:19596597-19596616 | None:intergenic | 25.0% |
| ! | TAGCTTTCAAAAATGTTTCA+TGG | + | chr8.2:19597258-19597277 | None:intergenic | 25.0% |
| ! | TCATGAAAAATTGAGAATGT+TGG | - | chr8.2:19596747-19596766 | MS.gene011311:intron | 25.0% |
| ! | TGACAAGAGCAAAAATATTA+AGG | + | chr8.2:19597814-19597833 | None:intergenic | 25.0% |
| ! | TGCAAGTATATACATAATAC+TGG | + | chr8.2:19595289-19595308 | None:intergenic | 25.0% |
| ! | TGTCTTTAACACATTGTTTA+AGG | + | chr8.2:19596598-19596617 | None:intergenic | 25.0% |
| ! | TTAATAAAAGTAAAGACACG+CGG | + | chr8.2:19596369-19596388 | None:intergenic | 25.0% |
| ! | TTCGTAAAATATAACGAGTT+GGG | - | chr8.2:19597063-19597082 | MS.gene011311:intron | 25.0% |
| ! | TTTATGTATATCGGACTAAA+CGG | + | chr8.2:19597013-19597032 | None:intergenic | 25.0% |
| ! | TTTGTTAACAAAAATGCTAC+TGG | - | chr8.2:19597447-19597466 | MS.gene011311:intron | 25.0% |
| !! | AACTCGTTATATTTTACGAA+TGG | + | chr8.2:19597063-19597082 | None:intergenic | 25.0% |
| !! | ACATTTGCTACAAATTACTT+AGG | - | chr8.2:19595977-19595996 | MS.gene011311:CDS | 25.0% |
| !! | ATTCAGGATTTTCAGTTAAT+GGG | - | chr8.2:19596177-19596196 | MS.gene011311:intron | 25.0% |
| !! | CAAATCTAAAGCTAAAAACT+CGG | + | chr8.2:19595574-19595593 | None:intergenic | 25.0% |
| !! | GCATTTTTGTCTTTTGTTAA+GGG | + | chr8.2:19596099-19596118 | None:intergenic | 25.0% |
| !! | TGCATTTTTGTCTTTTGTTA+AGG | + | chr8.2:19596100-19596119 | None:intergenic | 25.0% |
| !! | TGTCAATTCAATTTTCTCTT+CGG | + | chr8.2:19595960-19595979 | None:intergenic | 25.0% |
| !! | TTCTTAATTTTGCAGAGAAA+AGG | + | chr8.2:19597616-19597635 | None:intergenic | 25.0% |
| !! | TTTTCATTCTTACATATGAG+AGG | - | chr8.2:19596006-19596025 | MS.gene011311:CDS | 25.0% |
| !!! | GTTTTGGAATTTTCAATTGA+AGG | - | chr8.2:19595357-19595376 | MS.gene011311:intron | 25.0% |
| AAAACTAAAGTAATGGTGCA+TGG | - | chr8.2:19596946-19596965 | MS.gene011311:intron | 30.0% | |
| AATAGAATAACCTCAGCATA+AGG | + | chr8.2:19595507-19595526 | None:intergenic | 30.0% | |
| AATGTACCTACCTAATTAGA+AGG | + | chr8.2:19596912-19596931 | None:intergenic | 30.0% | |
| ACGTACGAGTTTATGTATAT+CGG | + | chr8.2:19597022-19597041 | None:intergenic | 30.0% | |
| AGTGAAAGAAAAAATCCAAG+AGG | - | chr8.2:19595476-19595495 | MS.gene011311:intron | 30.0% | |
| ATATATGTTTGCACTTTGCA+GGG | - | chr8.2:19598227-19598246 | MS.gene011311:intron | 30.0% | |
| CTTCGATGCAATAAAAAACA+AGG | + | chr8.2:19598107-19598126 | None:intergenic | 30.0% | |
| GAAAAATTGAGAATGTTGGT+GGG | - | chr8.2:19596751-19596770 | MS.gene011311:intron | 30.0% | |
| TATATATGTTTGCACTTTGC+AGG | - | chr8.2:19598226-19598245 | MS.gene011311:intron | 30.0% | |
| TCGTAAAATATAACGAGTTG+GGG | - | chr8.2:19597064-19597083 | MS.gene011311:intron | 30.0% | |
| TGAAAAATTGAGAATGTTGG+TGG | - | chr8.2:19596750-19596769 | MS.gene011311:intron | 30.0% | |
| TTAGCACAACATGAATTAAC+AGG | + | chr8.2:19595866-19595885 | None:intergenic | 30.0% | |
| TTATGCTGAGGTTATTCTAT+TGG | - | chr8.2:19595506-19595525 | MS.gene011311:CDS | 30.0% | |
| TTATGTATATCGGACTAAAC+GGG | + | chr8.2:19597012-19597031 | None:intergenic | 30.0% | |
| TTCTGCACAACTTACATTAT+TGG | - | chr8.2:19596678-19596697 | MS.gene011311:intron | 30.0% | |
| TTCTTCAGTAATTCATAGCT+GGG | - | chr8.2:19597525-19597544 | MS.gene011311:CDS | 30.0% | |
| TTCTTGTGTTCTTAAATTGC+AGG | - | chr8.2:19597418-19597437 | MS.gene011311:intron | 30.0% | |
| TTGGGAAATAATTATAGGCA+AGG | - | chr8.2:19597894-19597913 | MS.gene011311:CDS | 30.0% | |
| TTTCTTCAGTAATTCATAGC+TGG | - | chr8.2:19597524-19597543 | MS.gene011311:CDS | 30.0% | |
| ! | GATTCAGGATTTTCAGTTAA+TGG | - | chr8.2:19596176-19596195 | MS.gene011311:intron | 30.0% |
| ! | TCTGACTACAATTTAAAACC+CGG | + | chr8.2:19595696-19595715 | None:intergenic | 30.0% |
| ! | TGATGACATCATTTTCACTA+TGG | - | chr8.2:19596261-19596280 | MS.gene011311:intron | 30.0% |
| ! | TGTATTGTTCCATAGCTTTT+TGG | + | chr8.2:19598369-19598388 | None:intergenic | 30.0% |
| ! | TTCAGGATTTTCAGTTAATG+GGG | - | chr8.2:19596178-19596197 | MS.gene011311:intron | 30.0% |
| ! | TTTTTACTATACTTCATGGC+AGG | + | chr8.2:19596812-19596831 | None:intergenic | 30.0% |
| !! | TATTGTTGATTCAAGTTGAG+TGG | + | chr8.2:19597185-19597204 | None:intergenic | 30.0% |
| AAAAAGGGAATCATCGATGA+AGG | - | chr8.2:19595027-19595046 | MS.gene011311:CDS | 35.0% | |
| AAAAGGGAATCATCGATGAA+GGG | - | chr8.2:19595028-19595047 | MS.gene011311:CDS | 35.0% | |
| AATCAGAAGCCAAAAAGCTA+TGG | - | chr8.2:19598357-19598376 | MS.gene011311:CDS | 35.0% | |
| AGAAAAGAATACCCACAGAT+AGG | - | chr8.2:19597349-19597368 | MS.gene011311:intron | 35.0% | |
| AGGAATTATTAGAGCACACA+AGG | - | chr8.2:19597964-19597983 | MS.gene011311:CDS | 35.0% | |
| ATTAAGATCCCTATTCACCA+TGG | + | chr8.2:19598207-19598226 | None:intergenic | 35.0% | |
| CTCTAAGCCAAAAAATCGAA+GGG | - | chr8.2:19598273-19598292 | MS.gene011311:intron | 35.0% | |
| GAGACAGACAAAATCATTCA+AGG | + | chr8.2:19596890-19596909 | None:intergenic | 35.0% | |
| GCAAATAAAACAGGCATTCA+AGG | - | chr8.2:19597487-19597506 | MS.gene011311:CDS | 35.0% | |
| GGAATTATTAGAGCACACAA+GGG | - | chr8.2:19597965-19597984 | MS.gene011311:CDS | 35.0% | |
| GGTTGGCAACAAAAGAAAAA+GGG | - | chr8.2:19595012-19595031 | MS.gene011311:CDS | 35.0% | |
| GTGATTAATCAAGTATCCCA+GGG | - | chr8.2:19597214-19597233 | MS.gene011311:intron | 35.0% | |
| GTTAAGGGCTACAAACTAAA+GGG | + | chr8.2:19596084-19596103 | None:intergenic | 35.0% | |
| TATGTATATCGGACTAAACG+GGG | + | chr8.2:19597011-19597030 | None:intergenic | 35.0% | |
| TATTCATACATAGGTCACCT+AGG | + | chr8.2:19596852-19596871 | None:intergenic | 35.0% | |
| TCATCCATCAGTTGAGAAAA+GGG | - | chr8.2:19595666-19595685 | MS.gene011311:intron | 35.0% | |
| TCTAAGCCAAAAAATCGAAG+GGG | - | chr8.2:19598274-19598293 | MS.gene011311:intron | 35.0% | |
| TGATTAATCAAGTATCCCAG+GGG | - | chr8.2:19597215-19597234 | MS.gene011311:intron | 35.0% | |
| TGCAGAGAAAAGGAAACAAA+TGG | + | chr8.2:19597606-19597625 | None:intergenic | 35.0% | |
| TGGTTGGCAACAAAAGAAAA+AGG | - | chr8.2:19595011-19595030 | MS.gene011311:CDS | 35.0% | |
| TGTTAAGGGCTACAAACTAA+AGG | + | chr8.2:19596085-19596104 | None:intergenic | 35.0% | |
| TTCATCCATCAGTTGAGAAA+AGG | - | chr8.2:19595665-19595684 | MS.gene011311:intron | 35.0% | |
| TTGTCTGTCTCCTTCTAATT+AGG | - | chr8.2:19596899-19596918 | MS.gene011311:intron | 35.0% | |
| TTTCCAAACCATGGTGAATA+GGG | - | chr8.2:19598196-19598215 | MS.gene011311:intron | 35.0% | |
| ! | AGATACATGGTCTAGAATAG+AGG | + | chr8.2:19598445-19598464 | None:intergenic | 35.0% |
| ! | GAAGGGAACAATAAGGTATT+TGG | - | chr8.2:19595045-19595064 | MS.gene011311:CDS | 35.0% |
| ! | GATACATGGTCTAGAATAGA+GGG | + | chr8.2:19598444-19598463 | None:intergenic | 35.0% |
| ! | TCAGGATTTTCAGTTAATGG+GGG | - | chr8.2:19596179-19596198 | MS.gene011311:intron | 35.0% |
| ! | TTTTCCAAACCATGGTGAAT+AGG | - | chr8.2:19598195-19598214 | MS.gene011311:intron | 35.0% |
| !! | TTGTTTTGCAGAAACAATGC+AGG | - | chr8.2:19595908-19595927 | MS.gene011311:CDS | 35.0% |
| !!! | TACCTTTGTTTTCCAAACCA+TGG | - | chr8.2:19598187-19598206 | MS.gene011311:intron | 35.0% |
| AAAAAATCGAAGGGGTGAGT+GGG | - | chr8.2:19598282-19598301 | MS.gene011311:intron | 40.0% | |
| AAAAAGAGGAGTGAGAGTTG+TGG | - | chr8.2:19595422-19595441 | MS.gene011311:intron | 40.0% | |
| ACAAAACCATGAAGCAGTGA+CGG | - | chr8.2:19596154-19596173 | MS.gene011311:intron | 40.0% | |
| ACTATACTTCATGGCAGGAA+CGG | + | chr8.2:19596807-19596826 | None:intergenic | 40.0% | |
| AGATTTGCGACTGCAATCTA+GGG | + | chr8.2:19595826-19595845 | None:intergenic | 40.0% | |
| AGCACACAAGGGCTTAATAA+CGG | - | chr8.2:19597976-19597995 | MS.gene011311:CDS | 40.0% | |
| ATGAGAGCTGTTAGGTTTGA+AGG | + | chr8.2:19595148-19595167 | None:intergenic | 40.0% | |
| CATCGATGAAGGGAACAATA+AGG | - | chr8.2:19595038-19595057 | MS.gene011311:CDS | 40.0% | |
| CGTGATTAATCAAGTATCCC+AGG | - | chr8.2:19597213-19597232 | MS.gene011311:intron | 40.0% | |
| CTGTCTCCTTCTAATTAGGT+AGG | - | chr8.2:19596903-19596922 | MS.gene011311:intron | 40.0% | |
| GAATTTGAGCCAAAACCACT+AGG | + | chr8.2:19595085-19595104 | None:intergenic | 40.0% | |
| GATTCTGCATGTGAAGGAAA+TGG | - | chr8.2:19597744-19597763 | MS.gene011311:intron | 40.0% | |
| GGAAATGGCTAGACAACTAA+AGG | - | chr8.2:19597759-19597778 | MS.gene011311:intron | 40.0% | |
| GTGTGGAATTCATATTCTGC+TGG | + | chr8.2:19596062-19596081 | None:intergenic | 40.0% | |
| TGAGAGCTGTTAGGTTTGAA+GGG | + | chr8.2:19595147-19595166 | None:intergenic | 40.0% | |
| TTCCTTCACATGCAGAATCA+TGG | + | chr8.2:19597743-19597762 | None:intergenic | 40.0% | |
| ! | ATCCCAGGGGTACAAAAAAA+TGG | - | chr8.2:19597228-19597247 | MS.gene011311:intron | 40.0% |
| ! | ATCTCCCTTTTCTCAACTGA+TGG | + | chr8.2:19595673-19595692 | None:intergenic | 40.0% |
| ! | CACCATGGTTTGGAAAACAA+AGG | + | chr8.2:19598192-19598211 | None:intergenic | 40.0% |
| ! | GCTAGAGTGTTAGCAAAAAG+AGG | - | chr8.2:19595408-19595427 | MS.gene011311:intron | 40.0% |
| ! | GCTCTAAGCCAAAAAATCGA+AGG | - | chr8.2:19598272-19598291 | MS.gene011311:intron | 40.0% |
| ! | GGAACAATAAGGTATTTGGC+AGG | - | chr8.2:19595049-19595068 | MS.gene011311:CDS | 40.0% |
| ! | TTTGTACTGTGTTGATCCGT+GGG | - | chr8.2:19597090-19597109 | MS.gene011311:intron | 40.0% |
| ! | TTTTCTCTTCGGAGAATTCC+AGG | + | chr8.2:19595949-19595968 | None:intergenic | 40.0% |
| !! | GTTGATTCAAGTTGAGTGGA+TGG | + | chr8.2:19597181-19597200 | None:intergenic | 40.0% |
| !! | TCAATTGAAGGTGCTACTTC+TGG | - | chr8.2:19595369-19595388 | MS.gene011311:intron | 40.0% |
| !! | TGCTTTAAAGACATGCTCAC+TGG | - | chr8.2:19597565-19597584 | MS.gene011311:intron | 40.0% |
| !!! | AGCCATTTTTTTGTACCCCT+GGG | + | chr8.2:19597233-19597252 | None:intergenic | 40.0% |
| !!! | ATACTAGCTTGTTTTGCCCA+CGG | + | chr8.2:19597109-19597128 | None:intergenic | 40.0% |
| AACCTAACAGCTCTCATCAC+TGG | - | chr8.2:19595151-19595170 | MS.gene011311:CDS | 45.0% | |
| ACTATCAATGCAGTGCATCC+AGG | - | chr8.2:19597929-19597948 | MS.gene011311:CDS | 45.0% | |
| AGCCATGATTCTGCATGTGA+AGG | - | chr8.2:19597738-19597757 | MS.gene011311:intron | 45.0% | |
| AGTTGAGAAAAGGGAGATCC+GGG | - | chr8.2:19595675-19595694 | MS.gene011311:intron | 45.0% | |
| ATAGGCAACAGAGAGGGATT+TGG | - | chr8.2:19597367-19597386 | MS.gene011311:intron | 45.0% | |
| ATCCACGTTGAGGTAATTGG+GGG | + | chr8.2:19596784-19596803 | None:intergenic | 45.0% | |
| ATTCCTGTCTTCACAATGCC+TGG | + | chr8.2:19597950-19597969 | None:intergenic | 45.0% | |
| CAAAAAATCGAAGGGGTGAG+TGG | - | chr8.2:19598281-19598300 | MS.gene011311:intron | 45.0% | |
| CAGTTGAGAAAAGGGAGATC+CGG | - | chr8.2:19595674-19595693 | MS.gene011311:intron | 45.0% | |
| CGACTTAGACAAGCAGCAAT+TGG | - | chr8.2:19598407-19598426 | MS.gene011311:CDS | 45.0% | |
| GAGATTTGCGACTGCAATCT+AGG | + | chr8.2:19595827-19595846 | None:intergenic | 45.0% | |
| GATCCACGTTGAGGTAATTG+GGG | + | chr8.2:19596785-19596804 | None:intergenic | 45.0% | |
| GATCCCTATTCACCATGGTT+TGG | + | chr8.2:19598202-19598221 | None:intergenic | 45.0% | |
| GCACACAAGGGCTTAATAAC+GGG | - | chr8.2:19597977-19597996 | MS.gene011311:CDS | 45.0% | |
| GCTGCTCAAAACGATATCAC+AGG | - | chr8.2:19598126-19598145 | MS.gene011311:intron | 45.0% | |
| GGATCCACGTTGAGGTAATT+GGG | + | chr8.2:19596786-19596805 | None:intergenic | 45.0% | |
| GGGCAAAACAAGCTAGTATG+AGG | - | chr8.2:19597110-19597129 | MS.gene011311:intron | 45.0% | |
| TACCAGTGATGAGAGCTGTT+AGG | + | chr8.2:19595156-19595175 | None:intergenic | 45.0% | |
| TTAGGCTCAAACAGAGTCCT+AGG | - | chr8.2:19596832-19596851 | MS.gene011311:intron | 45.0% | |
| ! | AGGAGTGTACTCTCATAACC+TGG | - | chr8.2:19595928-19595947 | MS.gene011311:CDS | 45.0% |
| ! | ATGGACAGCCACTCTTTTAG+CGG | - | chr8.2:19596965-19596984 | MS.gene011311:intron | 45.0% |
| ! | GTTTGTACTGTGTTGATCCG+TGG | - | chr8.2:19597089-19597108 | MS.gene011311:intron | 45.0% |
| !! | CATAGCCTTTTTCATGTCCC+TGG | + | chr8.2:19595454-19595473 | None:intergenic | 45.0% |
| !! | GAAGGTGCTACTTCTGGTAT+TGG | - | chr8.2:19595375-19595394 | MS.gene011311:intron | 45.0% |
| !!! | CACTCACCCCTTCGATTTTT+TGG | + | chr8.2:19598283-19598302 | None:intergenic | 45.0% |
| !!! | CAGCCATTTTTTTGTACCCC+TGG | + | chr8.2:19597234-19597253 | None:intergenic | 45.0% |
| !!! | AAATTTTACAAAAATATTTA+TGG | + | chr8.2:19596217-19596236 | None:intergenic | 5.0% |
| !!! | ATAAATTTAATTTTTTTCTT+AGG | + | chr8.2:19596719-19596738 | None:intergenic | 5.0% |
| AGAGGAGAGTCCTTATGCTG+AGG | - | chr8.2:19595494-19595513 | MS.gene011311:CDS | 50.0% | |
| AGAGGAGTGAGAGTTGTGGT+TGG | - | chr8.2:19595426-19595445 | MS.gene011311:intron | 50.0% | |
| AGTACCCACCGCTAAAAGAG+TGG | + | chr8.2:19596976-19596995 | None:intergenic | 50.0% | |
| CAGCATAAGGACTCTCCTCT+TGG | + | chr8.2:19595494-19595513 | None:intergenic | 50.0% | |
| CCACAGATAGGCAACAGAGA+GGG | - | chr8.2:19597361-19597380 | MS.gene011311:intron | 50.0% | |
| CCTCTCTGTTGCCTATCTGT+GGG | + | chr8.2:19597363-19597382 | None:intergenic | 50.0% | |
| CGGATCCACGTTGAGGTAAT+TGG | + | chr8.2:19596787-19596806 | None:intergenic | 50.0% | |
| CTGAATCCGTCACTGCTTCA+TGG | + | chr8.2:19596163-19596182 | None:intergenic | 50.0% | |
| GAGCTGTTAGGTTTGAAGGG+AGG | + | chr8.2:19595144-19595163 | None:intergenic | 50.0% | |
| GGGCTACAAACTAAAGGGTG+TGG | + | chr8.2:19596079-19596098 | None:intergenic | 50.0% | |
| GTATATCGGACTAAACGGGG+CGG | + | chr8.2:19597008-19597027 | None:intergenic | 50.0% | |
| TATATCGGACTAAACGGGGC+GGG | + | chr8.2:19597007-19597026 | None:intergenic | 50.0% | |
| ! | ACAGCCACTCTTTTAGCGGT+GGG | - | chr8.2:19596969-19596988 | MS.gene011311:intron | 50.0% |
| ! | AGGTATTTGGCAGGCATTGC+AGG | - | chr8.2:19595058-19595077 | MS.gene011311:CDS | 50.0% |
| ! | ATTGCAGGGCCTAGTGGTTT+TGG | - | chr8.2:19595073-19595092 | MS.gene011311:CDS | 50.0% |
| ! | CATCCAGGCATTGTGAAGAC+AGG | - | chr8.2:19597944-19597963 | MS.gene011311:CDS | 50.0% |
| ! | GGTATTTGGCAGGCATTGCA+GGG | - | chr8.2:19595059-19595078 | MS.gene011311:CDS | 50.0% |
| ! | TCTTTTAGCGGTGGGTACTC+TGG | - | chr8.2:19596977-19596996 | MS.gene011311:intron | 50.0% |
| ! | TGGTGCCAGGGACATGAAAA+AGG | - | chr8.2:19595446-19595465 | MS.gene011311:intron | 50.0% |
| !! | CATGAAGCAGTGACGGATTC+AGG | - | chr8.2:19596161-19596180 | MS.gene011311:intron | 50.0% |
| CCCACAGATAGGCAACAGAG+AGG | - | chr8.2:19597360-19597379 | MS.gene011311:intron | 55.0% | |
| CCCTCTCTGTTGCCTATCTG+TGG | + | chr8.2:19597364-19597383 | None:intergenic | 55.0% | |
| TGCCCCCAATTACCTCAACG+TGG | - | chr8.2:19596779-19596798 | MS.gene011311:intron | 55.0% | |
| TTAGCGGTGGGTACTCTGGT+TGG | - | chr8.2:19596981-19597000 | MS.gene011311:intron | 55.0% | |
| ! | GACAGCCACTCTTTTAGCGG+TGG | - | chr8.2:19596968-19596987 | MS.gene011311:intron | 55.0% |
| ! | TGAGAGTTGTGGTTGGTGCC+AGG | - | chr8.2:19595433-19595452 | MS.gene011311:intron | 55.0% |
| !! | GAGAGTTGTGGTTGGTGCCA+GGG | - | chr8.2:19595434-19595453 | MS.gene011311:intron | 55.0% |
| GCAGGAACGGATCCACGTTG+AGG | + | chr8.2:19596794-19596813 | None:intergenic | 60.0% | |
| ! | GCAGGCATTGCAGGGCCTAG+TGG | - | chr8.2:19595067-19595086 | MS.gene011311:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 19595010 | 19598466 | 19595010 | ID=MS.gene011311 |
| chr8.2 | mRNA | 19595010 | 19598466 | 19595010 | ID=MS.gene011311.t1;Parent=MS.gene011311 |
| chr8.2 | exon | 19598304 | 19598466 | 19598304 | ID=MS.gene011311.t1.exon1;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19598304 | 19598466 | 19598304 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19597866 | 19598097 | 19597866 | ID=MS.gene011311.t1.exon2;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19597866 | 19598097 | 19597866 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19597478 | 19597557 | 19597478 | ID=MS.gene011311.t1.exon3;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19597478 | 19597557 | 19597478 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19595883 | 19596036 | 19595883 | ID=MS.gene011311.t1.exon4;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19595883 | 19596036 | 19595883 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19595696 | 19595774 | 19595696 | ID=MS.gene011311.t1.exon5;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19595696 | 19595774 | 19595696 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19595478 | 19595565 | 19595478 | ID=MS.gene011311.t1.exon6;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19595478 | 19595565 | 19595478 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19595329 | 19595375 | 19595329 | ID=MS.gene011311.t1.exon7;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19595329 | 19595375 | 19595329 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| chr8.2 | exon | 19595010 | 19595228 | 19595010 | ID=MS.gene011311.t1.exon8;Parent=MS.gene011311.t1 |
| chr8.2 | CDS | 19595010 | 19595228 | 19595010 | ID=cds.MS.gene011311.t1;Parent=MS.gene011311.t1 |
| Gene Sequence |
| Protein sequence |
