AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006263

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006263.t1 MTR_1g100315 98.730 315 4 0 1 315 1 315 0.0 642
MS.gene006263.t1 MTR_1g100305 82.857 315 54 0 1 315 1 315 0.0 555
MS.gene006263.t1 MTR_1g100395 84.615 312 48 0 1 312 1 312 0.0 546
MS.gene006263.t1 MTR_1g100335 83.492 315 52 0 1 315 1 315 0.0 545
MS.gene006263.t1 MTR_8g098415 68.889 315 98 0 1 315 1 315 3.56e-162 454
MS.gene006263.t1 MTR_8g098415 69.805 308 93 0 1 308 1 308 9.06e-161 451
MS.gene006263.t1 MTR_6g053550 69.055 307 92 1 10 313 18 324 1.78e-154 435
MS.gene006263.t1 MTR_1g100335 83.740 246 40 0 1 246 1 246 9.43e-151 424
MS.gene006263.t1 MTR_1g100335 83.740 246 40 0 1 246 1 246 1.04e-150 423
MS.gene006263.t1 MTR_8g098415 68.992 258 80 0 58 315 1 258 1.04e-131 375
MS.gene006263.t1 MTR_1g068970 58.361 305 127 0 8 312 13 317 2.82e-128 369
MS.gene006263.t1 MTR_7g099850 58.170 306 127 1 8 312 13 318 1.71e-127 367
MS.gene006263.t1 MTR_6g053600 67.176 262 83 1 10 268 4 265 1.27e-123 356
MS.gene006263.t1 MTR_8g098415 74.429 219 56 0 1 219 1 219 9.77e-117 336
MS.gene006263.t1 MTR_1g068970 57.085 247 106 0 66 312 4 250 5.47e-101 297
MS.gene006263.t1 MTR_3g077410 43.910 312 171 2 8 315 13 324 1.16e-85 261
MS.gene006263.t1 MTR_8g099995 45.902 305 161 3 8 308 13 317 6.53e-85 259
MS.gene006263.t1 MTR_4g105310 43.269 312 173 2 8 315 24 335 3.39e-80 247
MS.gene006263.t1 MTR_4g105310 44.856 243 130 2 8 246 24 266 9.91e-62 197
MS.gene006263.t1 MTR_1g100345 63.514 74 27 0 33 106 4 77 1.95e-26 100
MS.gene006263.t1 MTR_6g081020 29.276 304 186 9 30 312 62 357 3.20e-26 107
MS.gene006263.t1 MTR_6g041980 28.195 266 169 5 25 285 62 310 1.75e-25 104
MS.gene006263.t1 MTR_2g079710 29.712 313 185 10 31 312 88 396 1.88e-22 97.1
MS.gene006263.t1 MTR_3g091070 28.477 302 168 11 32 312 43 317 1.81e-20 90.5
MS.gene006263.t1 MTR_6g453040 29.139 302 184 10 32 312 43 335 2.18e-19 87.8
MS.gene006263.t1 MTR_6g041980 28.866 194 131 2 25 218 62 248 9.52e-19 84.7
MS.gene006263.t1 MTR_3g009190 29.139 302 184 10 32 312 65 357 9.73e-19 85.9
MS.gene006263.t1 MTR_3g009190 29.139 302 184 10 32 312 83 375 1.38e-18 85.9
MS.gene006263.t1 MTR_3g009190 28.904 301 184 10 33 312 65 356 1.89e-16 79.3
MS.gene006263.t1 MTR_4g087460 28.512 242 139 6 32 239 24 265 3.80e-13 69.3
MS.gene006263.t1 MTR_6g453040 30.049 203 121 6 32 220 65 260 1.00e-11 65.1
MS.gene006263.t1 MTR_8g022500 35.398 113 48 2 34 146 431 518 2.74e-11 64.7
MS.gene006263.t1 MTR_6g453040 30.108 186 111 5 32 203 65 245 3.51e-11 62.8
MS.gene006263.t1 MTR_7g076660 26.280 293 152 9 32 283 9 278 9.04e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006263.t1 AT4G11410 71.111 315 91 0 1 315 1 315 4.59e-168 469
MS.gene006263.t1 AT4G23420 70.253 316 93 1 1 315 1 316 2.91e-166 465
MS.gene006263.t1 AT4G23420 70.253 316 93 1 1 315 1 316 2.91e-166 465
MS.gene006263.t1 AT4G23430 70.513 312 91 1 1 311 1 312 7.35e-166 464
MS.gene006263.t1 AT4G23420 70.323 310 91 1 3 311 20 329 6.23e-163 457
MS.gene006263.t1 AT4G23430 69.872 312 91 2 1 311 1 310 1.80e-162 455
MS.gene006263.t1 AT4G23430 67.628 312 90 2 1 311 1 302 1.13e-155 438
MS.gene006263.t1 AT4G23430 66.987 312 90 3 1 311 1 300 2.55e-152 429
MS.gene006263.t1 AT4G23420 71.374 262 74 1 1 261 1 262 8.66e-138 391
MS.gene006263.t1 AT4G23420 72.874 247 66 1 1 246 1 247 6.55e-132 376
MS.gene006263.t1 AT4G11410 73.469 245 65 0 1 245 1 245 5.11e-130 371
MS.gene006263.t1 AT2G37540 55.375 307 137 0 6 312 10 316 6.79e-125 360
MS.gene006263.t1 AT5G02540 58.958 307 126 0 6 312 10 316 6.82e-124 358
MS.gene006263.t1 AT2G37540 57.627 236 100 0 6 241 10 245 1.14e-98 291
MS.gene006263.t1 AT4G24050 46.429 308 162 2 8 312 13 320 2.05e-87 265
MS.gene006263.t1 AT5G50130 46.624 311 162 3 8 314 13 323 2.86e-85 260
MS.gene006263.t1 AT5G50130 46.454 282 150 1 34 314 8 289 5.16e-79 243
MS.gene006263.t1 AT5G50130 46.643 283 149 2 34 314 8 290 1.70e-78 241
MS.gene006263.t1 AT1G64590 46.154 299 158 2 17 312 22 320 2.78e-76 237
MS.gene006263.t1 AT4G24050 45.455 264 139 3 8 268 13 274 8.85e-71 221
MS.gene006263.t1 AT5G50130 45.660 265 140 3 8 268 13 277 1.82e-69 219
MS.gene006263.t1 AT5G50130 45.865 266 139 4 8 268 13 278 8.96e-69 217
MS.gene006263.t1 AT5G50130 49.145 234 117 1 8 239 13 246 1.96e-68 214
MS.gene006263.t1 AT5G50130 49.362 235 116 2 8 239 13 247 1.00e-67 213
MS.gene006263.t1 AT5G50130 45.570 237 127 2 34 268 8 244 1.18e-62 201
MS.gene006263.t1 AT5G50130 45.798 238 126 3 34 268 8 245 5.39e-62 199
MS.gene006263.t1 AT4G27760 32.039 309 169 9 30 312 58 351 6.73e-28 111
MS.gene006263.t1 AT5G54190 30.225 311 182 10 33 312 96 402 1.99e-27 110
MS.gene006263.t1 AT4G09750 27.632 304 194 7 4 302 20 302 2.27e-26 106
MS.gene006263.t1 AT1G03630 33.758 314 170 12 31 312 89 396 8.60e-26 106
MS.gene006263.t1 AT1G03630 33.758 314 170 12 31 312 91 398 8.97e-26 106
MS.gene006263.t1 AT5G04070 29.352 293 185 8 32 308 61 347 1.44e-23 99.8
MS.gene006263.t1 AT4G27440 30.868 311 180 10 33 312 92 398 1.63e-23 100
MS.gene006263.t1 AT4G27440 30.868 311 180 10 33 312 92 398 1.63e-23 100
MS.gene006263.t1 AT5G53100 32.026 306 176 11 30 312 45 341 1.06e-22 97.4
MS.gene006263.t1 AT5G53090 29.900 301 186 6 30 312 57 350 2.41e-22 96.3
MS.gene006263.t1 AT5G15940 27.907 301 193 10 32 314 63 357 9.66e-21 91.7
MS.gene006263.t1 AT5G15940 27.907 301 193 10 32 314 63 357 9.66e-21 91.7
MS.gene006263.t1 AT5G15940 27.907 301 193 10 32 314 62 356 1.05e-20 91.7
MS.gene006263.t1 AT5G54190 27.719 285 172 9 58 312 1 281 1.27e-19 87.4
MS.gene006263.t1 AT5G15940 27.477 222 144 5 32 240 63 280 2.99e-15 75.5
MS.gene006263.t1 AT5G51030 26.712 292 153 13 32 285 40 308 8.71e-12 65.5
MS.gene006263.t1 AT5G61830 33.333 144 83 5 32 170 39 174 3.54e-11 63.5
MS.gene006263.t1 AT5G61830 33.333 144 83 5 32 170 39 174 3.54e-11 63.5

Find 66 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGCAGGAAAGGGGTATC+TGG 0.244871 1.1:-72085059 MS.gene006263:CDS
TTGGGATTTCAGCATGAATT+TGG 0.287522 1.1:-72079846 MS.gene006263:CDS
CTCTTTAAGTATTGCTTCTC+TGG 0.294320 1.1:+72084546 None:intergenic
ACATGGTGTCCATGTGATTA+TGG 0.307075 1.1:-72084599 MS.gene006263:CDS
GATTATGGCTGTTAGAAATA+AGG 0.314737 1.1:-72084584 MS.gene006263:CDS
CTGATTTGGCTAAGAAACTT+TGG 0.324819 1.1:-72079865 MS.gene006263:CDS
ACATGGGAGGGATGCTGATT+TGG 0.329130 1.1:-72079879 MS.gene006263:CDS
TTGTATACAGTTACAGCAAA+TGG 0.345777 1.1:-72082024 MS.gene006263:intron
CACTAACTCCCTTCACTTGT+GGG 0.347652 1.1:+72079942 None:intergenic
CCTCCCATGTGAACTTGATT+TGG 0.351212 1.1:+72079892 None:intergenic
CCAACTTACAAAACATTTCA+AGG 0.364591 1.1:-72081957 MS.gene006263:intron
CTGTAGTTCGATGTTGTCAT+TGG 0.387818 1.1:+72083739 None:intergenic
ACGCGTGTTCTTGCTTTACA+TGG 0.389431 1.1:-72084616 MS.gene006263:CDS
TGATTTGGCTAAGAAACTTT+GGG 0.394881 1.1:-72079864 MS.gene006263:CDS
GGAGTTAGATCTCAGTTCAT+TGG 0.404587 1.1:-72084497 MS.gene006263:CDS
CCACTAACTCCCTTCACTTG+TGG 0.412556 1.1:+72079941 None:intergenic
TGTATACAGTTACAGCAAAT+GGG 0.425806 1.1:-72082023 MS.gene006263:intron
TACAGCAAATGGGGTGCATA+TGG 0.428773 1.1:-72082013 MS.gene006263:CDS
ACAGGAGCATCCAGTGGTAT+TGG 0.435914 1.1:-72084649 MS.gene006263:intron
GCATCCGAATTTAATTCCTC+TGG 0.439216 1.1:-72084457 MS.gene006263:CDS
CCACAAGTGAAGGGAGTTAG+TGG 0.447541 1.1:-72079941 MS.gene006263:CDS
TTACATCTTGATCAGGATGA+TGG 0.452961 1.1:-72081340 MS.gene006263:intron
TCTTACATCAAGATGTTCAA+TGG 0.471739 1.1:+72084430 None:intergenic
AAGACCAGAGGAATTAAATT+CGG 0.474997 1.1:+72084453 None:intergenic
AGATTGGTGGCAATGCCTCC+TGG 0.478554 1.1:+72081289 None:intergenic
ACAAAATTAATGAACAATCA+AGG 0.483699 1.1:-72083157 MS.gene006263:intron
TGTGGCCATTCAGCAGGAAA+GGG 0.484540 1.1:-72085067 MS.gene006263:CDS
ACTCATGGAATTGATGCAAC+TGG 0.489575 1.1:-72085005 MS.gene006263:CDS
TGCAAATTTGTGAGCTTCTG+AGG 0.489977 1.1:+72083202 None:intergenic
TCAGCAGGAAAGGGGTATCT+GGG 0.495041 1.1:-72085058 MS.gene006263:CDS
CGTTGATTGCGCTGTTATGA+CGG 0.496487 1.1:+72081263 None:intergenic
GCATCATGTGGCCATTCAGC+AGG 0.496748 1.1:-72085073 None:intergenic
CACAAATTTGCATATTCTGA+AGG 0.498869 1.1:-72083191 MS.gene006263:CDS
TTGTCATTGGAAAGCATGAA+AGG 0.519351 1.1:+72083752 None:intergenic
GATACCCCTTTCCTGCTGAA+TGG 0.522828 1.1:+72085062 None:intergenic
ATGTGGCCATTCAGCAGGAA+AGG 0.530864 1.1:-72085068 MS.gene006263:CDS
ATGTTTCACAAATACCTAAG+TGG 0.533317 1.1:+72083705 None:intergenic
ATTGCAAATTCTCTTCATCC+AGG 0.533827 1.1:-72081307 MS.gene006263:CDS
GGCCTCACTGCTATTGTCAC+TGG 0.537638 1.1:-72084984 MS.gene006263:intron
CAGTTTGCGACAAACCACTT+AGG 0.544627 1.1:-72083719 MS.gene006263:intron
AGCATTGCACCCACAAGTGA+AGG 0.549189 1.1:-72079951 MS.gene006263:CDS
GCTGTTATGACGGTAAAGAT+TGG 0.556805 1.1:+72081273 None:intergenic
CAAATCAAGTTCACATGGGA+GGG 0.557158 1.1:-72079891 MS.gene006263:CDS
GTGATTGGAAGAAACAATGC+AGG 0.557679 1.1:-72083788 MS.gene006263:intron
TTTCAGCATGAATTTGGTCA+AGG 0.566003 1.1:-72079840 MS.gene006263:CDS
AAGAAACAATGCAGGAGTCA+TGG 0.567107 1.1:-72083780 MS.gene006263:CDS
AGTCTCAACTCCAATACCAC+TGG 0.568579 1.1:+72084639 None:intergenic
ACAGCTGAAGAAGTTACTCA+TGG 0.574245 1.1:-72085020 MS.gene006263:CDS
TGCAACAGGTATAGTAAATG+TGG 0.575815 1.1:-72080205 MS.gene006263:intron
TGTCATTGGAAAGCATGAAA+GGG 0.579731 1.1:+72083753 None:intergenic
CGTCATAACAGCGCAATCAA+CGG 0.595268 1.1:-72081262 MS.gene006263:intron
GCTAGTGAAAGTAAGACTGA+AGG 0.596766 1.1:-72083242 MS.gene006263:CDS
GTTATGACGGTAAAGATTGG+TGG 0.600769 1.1:+72081276 None:intergenic
GTGGCCAAATCAAGTTCACA+TGG 0.609154 1.1:-72079896 MS.gene006263:CDS
ACAGGTATAGTAAATGTGGT+TGG 0.612281 1.1:-72080201 MS.gene006263:intron
CCAAATCAAGTTCACATGGG+AGG 0.616347 1.1:-72079892 MS.gene006263:CDS
TTCTAACAGCCATAATCACA+TGG 0.621462 1.1:+72084590 None:intergenic
GCATTGCACCCACAAGTGAA+GGG 0.624705 1.1:-72079950 MS.gene006263:CDS
CAATGCTACATAGCATGTTG+TGG 0.627328 1.1:+72079967 None:intergenic
GTATACAGTTACAGCAAATG+GGG 0.639935 1.1:-72082022 MS.gene006263:intron
GTGGCCATTCAGCAGGAAAG+GGG 0.656505 1.1:-72085066 MS.gene006263:CDS
GATGTTCAATGGAAGACCAG+AGG 0.666537 1.1:+72084441 None:intergenic
ATGTTAACAGGAGCATCCAG+TGG 0.683391 1.1:-72084655 MS.gene006263:intron
GCAAATTCTCTTCATCCAGG+AGG 0.683556 1.1:-72081304 MS.gene006263:CDS
TGGCCAAATCAAGTTCACAT+GGG 0.718809 1.1:-72079895 MS.gene006263:CDS
TACCAGTGACAATAGCAGTG+AGG 0.758013 1.1:+72084982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAAAAATAAACAAAA+AGG + chr1.1:72079970-72079989 None:intergenic 10.0%
!! AAATGAAAAATAAACAAAAA+GGG + chr1.1:72079969-72079988 None:intergenic 10.0%
!! ATCTAATAATATTATGATTA+AGG - chr1.1:72083939-72083958 MS.gene006263:intron 10.0%
!! CAAAATAAATAGTAAATAAA+AGG + chr1.1:72080967-72080986 None:intergenic 10.0%
!! TTAATCATAATATTATTAGA+TGG + chr1.1:72083940-72083959 None:intergenic 10.0%
!!! TCTTATTATCAATTTTATTT+AGG - chr1.1:72080510-72080529 MS.gene006263:intron 10.0%
!! AATAATAAATATCATGTAAG+TGG + chr1.1:72082630-72082649 None:intergenic 15.0%
!! AATAATATTATGATTAAGGT+TGG - chr1.1:72083943-72083962 MS.gene006263:intron 15.0%
!! ACATGATATTTATTATTGTT+TGG - chr1.1:72082633-72082652 MS.gene006263:intron 15.0%
!! ATAAAGTAATAATGTATGAA+TGG + chr1.1:72084495-72084514 None:intergenic 15.0%
!! TAAATCAAAGATAATTAATG+TGG + chr1.1:72083528-72083547 None:intergenic 15.0%
!! TAATTATTATATGGATATGA+TGG - chr1.1:72080221-72080240 MS.gene006263:intron 15.0%
!! TATAGATTAAAAACGAAATT+TGG + chr1.1:72080651-72080670 None:intergenic 15.0%
!! TGTCAAAAAAATAAAATGTA+TGG + chr1.1:72084269-72084288 None:intergenic 15.0%
!!! AAAGATCATTTTAAATTTGA+TGG + chr1.1:72080728-72080747 None:intergenic 15.0%
!!! AAATACATTGATTTTGAATT+GGG - chr1.1:72084556-72084575 MS.gene006263:CDS 15.0%
!!! AACTTCAATTTTATTTTCTT+GGG - chr1.1:72081863-72081882 MS.gene006263:intron 15.0%
!!! AAGATCATTTTAAATTTGAT+GGG + chr1.1:72080727-72080746 None:intergenic 15.0%
!!! GTAAACATTTTTAAAGATAA+TGG - chr1.1:72080898-72080917 MS.gene006263:intron 15.0%
!!! TAAATACATTGATTTTGAAT+TGG - chr1.1:72084555-72084574 MS.gene006263:CDS 15.0%
!!! TTTAATTTTAAGTTTCAAAC+AGG - chr1.1:72080559-72080578 MS.gene006263:intron 15.0%
!!! TTTATTGTTGTTATACATTA+TGG + chr1.1:72084421-72084440 None:intergenic 15.0%
!! AAAAACTACTATTGAACAAA+AGG + chr1.1:72080003-72080022 None:intergenic 20.0%
!! AAAACTACTATTGAACAAAA+GGG + chr1.1:72080002-72080021 None:intergenic 20.0%
!! ACAAAATTAATGAACAATCA+AGG - chr1.1:72081743-72081762 MS.gene006263:intron 20.0%
!! ATATAGTTCAATATGAAGTT+TGG - chr1.1:72081921-72081940 MS.gene006263:intron 20.0%
!! ATCATAATATTATTAGATGG+TGG + chr1.1:72083937-72083956 None:intergenic 20.0%
!! ATCATAGTATTATACTATTC+AGG - chr1.1:72083666-72083685 MS.gene006263:intron 20.0%
!! CAAATAAAATAGTTAGACTT+AGG + chr1.1:72084170-72084189 None:intergenic 20.0%
!! GGCTATGATTAATTATTATA+TGG - chr1.1:72080212-72080231 MS.gene006263:intron 20.0%
!! TATAGTTCAATATGAAGTTT+GGG - chr1.1:72081922-72081941 MS.gene006263:intron 20.0%
!! TCAGACATAAATAAATCTAA+TGG + chr1.1:72081400-72081419 None:intergenic 20.0%
!! TCATAATATTATTAGATGGT+GGG + chr1.1:72083936-72083955 None:intergenic 20.0%
!! TTTATGTAATATAATTCCAC+AGG - chr1.1:72081589-72081608 MS.gene006263:intron 20.0%
!! TTTCTTATACTATTAGTGAA+GGG - chr1.1:72084226-72084245 MS.gene006263:intron 20.0%
!!! AAAGTTTTTAAAAATGGAAG+AGG - chr1.1:72081803-72081822 MS.gene006263:intron 20.0%
!!! ACTTGTCGTAAAATTTTTTT+TGG - chr1.1:72083817-72083836 MS.gene006263:intron 20.0%
!!! ATATTTTTCAGACAATAATG+TGG - chr1.1:72084985-72085004 MS.gene006263:CDS 20.0%
!!! GAAAAAGCAAACAAATTTTA+TGG + chr1.1:72084618-72084637 None:intergenic 20.0%
!!! GAACTTCAATTTTATTTTCT+TGG - chr1.1:72081862-72081881 MS.gene006263:intron 20.0%
!!! GATGAAGAATATATTTGTTA+AGG + chr1.1:72082247-72082266 None:intergenic 20.0%
!!! GTTCATTAATTTTGTCAAAA+CGG + chr1.1:72081738-72081757 None:intergenic 20.0%
!!! TGAATTTTTCAATATTCAGA+GGG + chr1.1:72083977-72083996 None:intergenic 20.0%
!!! TGTAGATTTTATAAAACGTA+CGG + chr1.1:72084297-72084316 None:intergenic 20.0%
! AAACACAGATTTATGTGAAT+TGG - chr1.1:72082194-72082213 MS.gene006263:intron 25.0%
! AACTGTTTCAATTGTAAACA+AGG + chr1.1:72082756-72082775 None:intergenic 25.0%
! AATAAATATCATGTAAGTGG+TGG + chr1.1:72082627-72082646 None:intergenic 25.0%
! ACCTACTATTTATAAATGTG+AGG - chr1.1:72084769-72084788 MS.gene006263:intron 25.0%
! AGCTAAGAAAAGTGAAATAT+CGG + chr1.1:72084863-72084882 None:intergenic 25.0%
! AGCTGATGTTTAACAATATT+TGG + chr1.1:72083327-72083346 None:intergenic 25.0%
! AGTAATAATGTATGAATGGT+TGG + chr1.1:72084491-72084510 None:intergenic 25.0%
! AGTAATTTATAGCACTTGAT+TGG - chr1.1:72084382-72084401 MS.gene006263:intron 25.0%
! CAATATCATGTACCAAATAT+AGG + chr1.1:72083906-72083925 None:intergenic 25.0%
! CATTCATGAATATAACATAG+TGG - chr1.1:72082512-72082531 MS.gene006263:intron 25.0%
! CCTACTATTTATAAATGTGA+GGG - chr1.1:72084770-72084789 MS.gene006263:intron 25.0%
! CTACTATTTATAAATGTGAG+GGG - chr1.1:72084771-72084790 MS.gene006263:intron 25.0%
! CTTTCTTATACTATTAGTGA+AGG - chr1.1:72084225-72084244 MS.gene006263:intron 25.0%
! GGAAGCAAACATAATTAAAT+TGG + chr1.1:72082855-72082874 None:intergenic 25.0%
! GTAATAATGTATGAATGGTT+GGG + chr1.1:72084490-72084509 None:intergenic 25.0%
! GTGTGAAAGAGTAATTATAA+CGG - chr1.1:72081840-72081859 MS.gene006263:intron 25.0%
! TAACAACTTTAATAGAAACC+AGG + chr1.1:72080993-72081012 None:intergenic 25.0%
! TAATAATGTATGAATGGTTG+GGG + chr1.1:72084489-72084508 None:intergenic 25.0%
! TAATGAACAATCAAGGTAAT+AGG - chr1.1:72081750-72081769 MS.gene006263:intron 25.0%
! TATCTTAATCTCCTATCAAT+TGG - chr1.1:72083269-72083288 MS.gene006263:CDS 25.0%
! TTAAAAACGTCAACAATGTT+TGG - chr1.1:72080625-72080644 MS.gene006263:intron 25.0%
! TTCTATGTTGCTAAGTTATT+TGG - chr1.1:72080028-72080047 MS.gene006263:intron 25.0%
! TTGTTTACAATTGAAACAGT+TGG - chr1.1:72082755-72082774 MS.gene006263:intron 25.0%
! TTTAAAAGAGACATTTCAAG+AGG + chr1.1:72082601-72082620 None:intergenic 25.0%
!! AATTGATTTCCTGTTGAAAT+TGG - chr1.1:72080124-72080143 MS.gene006263:intron 25.0%
!! ACAGAATGTTTCTATGATTA+TGG + chr1.1:72083469-72083488 None:intergenic 25.0%
!! GTTTTACATCAAAGATTCAT+GGG + chr1.1:72082144-72082163 None:intergenic 25.0%
!! TAGGTGTTTTATCCTATATT+TGG - chr1.1:72083891-72083910 MS.gene006263:intron 25.0%
!! TGTTTTACATCAAAGATTCA+TGG + chr1.1:72082145-72082164 None:intergenic 25.0%
!! TTATTTGTTACATCTTGATC+AGG - chr1.1:72083553-72083572 MS.gene006263:intron 25.0%
!!! AATTTTTCAATATTCAGAGG+GGG + chr1.1:72083975-72083994 None:intergenic 25.0%
!!! CAGGAAATCAATTTTAGTTT+TGG + chr1.1:72080117-72080136 None:intergenic 25.0%
!!! CTGAATTTTTCAATATTCAG+AGG + chr1.1:72083978-72083997 None:intergenic 25.0%
!!! CTTTTAAGCTTTAACATCAT+CGG - chr1.1:72084052-72084071 MS.gene006263:intron 25.0%
!!! GAATTTTTCAATATTCAGAG+GGG + chr1.1:72083976-72083995 None:intergenic 25.0%
!!! GTGCTGAAAGTTTTTAAAAA+TGG - chr1.1:72081797-72081816 MS.gene006263:intron 25.0%
!!! TGTCGTAAAATTTTTTTTGG+TGG - chr1.1:72083820-72083839 MS.gene006263:intron 25.0%
!!! TTACTATTTATTTTGACTCC+TGG - chr1.1:72080972-72080991 MS.gene006263:intron 25.0%
AAAACTAGTCACCAATTGAT+AGG + chr1.1:72083283-72083302 None:intergenic 30.0%
AAGACCAGAGGAATTAAATT+CGG + chr1.1:72080450-72080469 None:intergenic 30.0%
ACAAGTCACAATAGTTTCAA+GGG - chr1.1:72081366-72081385 MS.gene006263:intron 30.0%
ACTTTCTCCTATCTAAATGT+AGG - chr1.1:72084904-72084923 MS.gene006263:intron 30.0%
AGAAAGATAGTGTCACATAA+CGG + chr1.1:72083755-72083774 None:intergenic 30.0%
AGGGTAAGAAAGAGTAATAA+AGG + chr1.1:72079950-72079969 None:intergenic 30.0%
AGTGATATACATATTGAGCT+CGG + chr1.1:72082296-72082315 None:intergenic 30.0%
ATCAGCAAAAATAGATGTGA+TGG - chr1.1:72080382-72080401 MS.gene006263:intron 30.0%
ATGTTTCACAAATACCTAAG+TGG + chr1.1:72081198-72081217 None:intergenic 30.0%
ATTATACAAGTCCTTTGATG+TGG - chr1.1:72083699-72083718 MS.gene006263:intron 30.0%
CACAAATTTGCATATTCTGA+AGG - chr1.1:72081709-72081728 MS.gene006263:intron 30.0%
CATAAAAGACTAACTTTCAG+TGG + chr1.1:72080604-72080623 None:intergenic 30.0%
CCAACTTACAAAACATTTCA+AGG - chr1.1:72082943-72082962 MS.gene006263:intron 30.0%
CCCTCACATTTATAAATAGT+AGG + chr1.1:72084773-72084792 None:intergenic 30.0%
CGATGATGTTAAAGCTTAAA+AGG + chr1.1:72084054-72084073 None:intergenic 30.0%
CTGATCTGTTTATTTGTGAT+TGG - chr1.1:72081097-72081116 MS.gene006263:intron 30.0%
CTTTCTCCTATCTAAATGTA+GGG - chr1.1:72084905-72084924 MS.gene006263:intron 30.0%
GAACATCTTGATGTAAGAAA+AGG - chr1.1:72080475-72080494 MS.gene006263:intron 30.0%
GATTATGGCTGTTAGAAATA+AGG - chr1.1:72080316-72080335 MS.gene006263:intron 30.0%
GGGTCATGTCAAATAAATAT+CGG - chr1.1:72084791-72084810 MS.gene006263:intron 30.0%
GTTATACATTATGGATGAGT+TGG + chr1.1:72084412-72084431 None:intergenic 30.0%
TAATACCTTGTAGTAGCTTT+AGG - chr1.1:72080054-72080073 MS.gene006263:intron 30.0%
TATTTAGGCAAAACTGCATT+GGG - chr1.1:72080525-72080544 MS.gene006263:intron 30.0%
TCTCTCATTATTTCAACTTC+TGG - chr1.1:72083048-72083067 MS.gene006263:intron 30.0%
TCTTACATCAAGATGTTCAA+TGG + chr1.1:72080473-72080492 None:intergenic 30.0%
TGTATACAGTTACAGCAAAT+GGG - chr1.1:72082877-72082896 MS.gene006263:intron 30.0%
TGTTTACTTCTACTATGTAG+TGG - chr1.1:72082973-72082992 MS.gene006263:intron 30.0%
TTAAAGATCATGATCAGTAC+TGG + chr1.1:72081051-72081070 None:intergenic 30.0%
TTATGTGACACTATCTTTCT+TGG - chr1.1:72083755-72083774 MS.gene006263:CDS 30.0%
TTATTTAGGCAAAACTGCAT+TGG - chr1.1:72080524-72080543 MS.gene006263:intron 30.0%
TTGTATACAGTTACAGCAAA+TGG - chr1.1:72082876-72082895 MS.gene006263:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG - chr1.1:72084906-72084925 MS.gene006263:intron 30.0%
TTTCTGTAGTATTTGTCAAC+TGG - chr1.1:72082817-72082836 MS.gene006263:intron 30.0%
! AAATCTGCATATTTCTACTG+TGG - chr1.1:72083121-72083140 MS.gene006263:intron 30.0%
! CCTTGAAATGTTTTGTAAGT+TGG + chr1.1:72082946-72082965 None:intergenic 30.0%
! GTACTGATCATGATCTTTAA+TGG - chr1.1:72081051-72081070 MS.gene006263:intron 30.0%
! GTTAGACTTAGGAGTATAAT+AGG + chr1.1:72084159-72084178 None:intergenic 30.0%
! TCTCTTGACAAATCTTTTGT+TGG - chr1.1:72081618-72081637 MS.gene006263:intron 30.0%
! TGACAAAGTATCTAACTTCT+GGG + chr1.1:72084449-72084468 None:intergenic 30.0%
! TGATGTTTGATTTATGCAAC+AGG - chr1.1:72084681-72084700 MS.gene006263:intron 30.0%
! TGATTTGGCTAAGAAACTTT+GGG - chr1.1:72085036-72085055 MS.gene006263:CDS 30.0%
! TTGACAAAGTATCTAACTTC+TGG + chr1.1:72084450-72084469 None:intergenic 30.0%
! TTTGCTGTAACTGTATACAA+AGG + chr1.1:72082876-72082895 None:intergenic 30.0%
!! ATTTTTCAATATTCAGAGGG+GGG + chr1.1:72083974-72083993 None:intergenic 30.0%
!! CTATTGGTTTGATTCTGAAA+AGG - chr1.1:72081898-72081917 MS.gene006263:intron 30.0%
!!! ATCACATCTATTTTTGCTGA+TGG + chr1.1:72080383-72080402 None:intergenic 30.0%
!!! TACATTGATTTTGAATTGGG+TGG - chr1.1:72084559-72084578 MS.gene006263:CDS 30.0%
!!! TCTTGGTTGCTTCATTTTTT+TGG - chr1.1:72083772-72083791 MS.gene006263:CDS 30.0%
AAAAGCAAAATCGTATCAGC+AGG + chr1.1:72082014-72082033 None:intergenic 35.0%
AATGTGGCAAAACCATCAAA+AGG + chr1.1:72083512-72083531 None:intergenic 35.0%
ACAGGTATAGTAAATGTGGT+TGG - chr1.1:72084699-72084718 MS.gene006263:intron 35.0%
AGATAGCAGATGCTGTAAAA+AGG + chr1.1:72083254-72083273 None:intergenic 35.0%
ATAAAAGGCAAAACTGCATC+AGG + chr1.1:72080952-72080971 None:intergenic 35.0%
ATCTTTCCGTGAAAATTGTG+AGG - chr1.1:72081324-72081343 MS.gene006263:CDS 35.0%
ATGTGGCAAAACCATCAAAA+GGG + chr1.1:72083511-72083530 None:intergenic 35.0%
ATTGCAAATTCTCTTCATCC+AGG - chr1.1:72083593-72083612 MS.gene006263:intron 35.0%
ATTTCTTGCAACTCTTGAGT+GGG + chr1.1:72082329-72082348 None:intergenic 35.0%
CACAAGTCACAATAGTTTCA+AGG - chr1.1:72081365-72081384 MS.gene006263:intron 35.0%
CTACATCAAATTCATGCAAC+TGG - chr1.1:72080191-72080210 MS.gene006263:CDS 35.0%
CTGTCTCAACTTATATAGCT+GGG - chr1.1:72081550-72081569 MS.gene006263:intron 35.0%
CTTGATGTAAGAAAAGGAAC+TGG - chr1.1:72080481-72080500 MS.gene006263:intron 35.0%
GCTAAAGTGACTAATACTGA+AGG - chr1.1:72084351-72084370 MS.gene006263:intron 35.0%
GGATATGATGGTATGTTAAC+AGG - chr1.1:72080233-72080252 MS.gene006263:intron 35.0%
GTATACAGTTACAGCAAATG+GGG - chr1.1:72082878-72082897 MS.gene006263:intron 35.0%
GTTGCATGAAGAATTAAGAG+TGG - chr1.1:72082787-72082806 MS.gene006263:intron 35.0%
TAAAAGGCAAAACTGCATCA+GGG + chr1.1:72080951-72080970 None:intergenic 35.0%
TACTGGAACATAGACATTCA+TGG + chr1.1:72081034-72081053 None:intergenic 35.0%
TATGATTATGGTTGCCCAAA+GGG + chr1.1:72083457-72083476 None:intergenic 35.0%
TCAGAAAACAACACTACTAC+TGG + chr1.1:72081081-72081100 None:intergenic 35.0%
TCTGTCTCAACTTATATAGC+TGG - chr1.1:72081549-72081568 MS.gene006263:intron 35.0%
TCTTTCCGTGAAAATTGTGA+GGG - chr1.1:72081325-72081344 MS.gene006263:CDS 35.0%
TGCAACAGGTATAGTAAATG+TGG - chr1.1:72084695-72084714 MS.gene006263:intron 35.0%
TGGACATTATTATCCCACAT+TGG - chr1.1:72082532-72082551 MS.gene006263:intron 35.0%
TGGGCAATCAATGTTACTAT+TGG - chr1.1:72081882-72081901 MS.gene006263:intron 35.0%
TTACATCTTGATCAGGATGA+TGG - chr1.1:72083560-72083579 MS.gene006263:intron 35.0%
TTCTAACAGCCATAATCACA+TGG + chr1.1:72080313-72080332 None:intergenic 35.0%
TTCTCCTATCTAAATGTAGG+GGG - chr1.1:72084907-72084926 MS.gene006263:intron 35.0%
TTGCATGAATTTGATGTAGC+AGG + chr1.1:72080190-72080209 None:intergenic 35.0%
TTGGGATTTCAGCATGAATT+TGG - chr1.1:72085054-72085073 MS.gene006263:CDS 35.0%
TTGTTAAACATCAGCTTGAG+TGG - chr1.1:72083331-72083350 MS.gene006263:intron 35.0%
TTTCAGCATGAATTTGGTCA+AGG - chr1.1:72085060-72085079 MS.gene006263:CDS 35.0%
! AAAGCTTAAAAGGTTGATCG+CGG + chr1.1:72084044-72084063 None:intergenic 35.0%
! CATTTAGAATGCCACATCAA+AGG + chr1.1:72083713-72083732 None:intergenic 35.0%
! CTCTTTAAGTATTGCTTCTC+TGG + chr1.1:72080357-72080376 None:intergenic 35.0%
! GTAGTACTTGTTGAAAGAAG+AGG - chr1.1:72082702-72082721 MS.gene006263:intron 35.0%
! GTGTGATCATTTTATGTGTG+AGG + chr1.1:72082377-72082396 None:intergenic 35.0%
! TATTTGTTAAGGTGCTTCCA+TGG + chr1.1:72082236-72082255 None:intergenic 35.0%
! TGTCATTGGAAAGCATGAAA+GGG + chr1.1:72081150-72081169 None:intergenic 35.0%
! TTGTCATTGGAAAGCATGAA+AGG + chr1.1:72081151-72081170 None:intergenic 35.0%
! TTTACAGTGTTGAACCAACT+TGG + chr1.1:72080883-72080902 None:intergenic 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG - chr1.1:72085035-72085054 MS.gene006263:CDS 35.0%
!! TAACGATTTTGACATACCTG+TGG + chr1.1:72084747-72084766 None:intergenic 35.0%
!! TTTTTCAGAGACCTGAATGA+AGG + chr1.1:72083418-72083437 None:intergenic 35.0%
!!! TTTTAGTTTGCTGTGAGTCT+AGG - chr1.1:72081954-72081973 MS.gene006263:intron 35.0%
AAAAGGCAAAACTGCATCAG+GGG + chr1.1:72080950-72080969 None:intergenic 40.0%
AACACCTAGAGCAATGTAGA+TGG + chr1.1:72083879-72083898 None:intergenic 40.0%
AACCTTGATCATGTGAAGAG+TGG + chr1.1:72082437-72082456 None:intergenic 40.0%
AACTAAAGCCTGTTCCAACT+AGG + chr1.1:72083386-72083405 None:intergenic 40.0%
AAGAAACAATGCAGGAGTCA+TGG - chr1.1:72081120-72081139 MS.gene006263:intron 40.0%
AAGCTTGTAAATCACTCCTC+AGG + chr1.1:72080080-72080099 None:intergenic 40.0%
ACAGCTGAAGAAGTTACTCA+TGG - chr1.1:72079880-72079899 MS.gene006263:CDS 40.0%
ACATGGTGTCCATGTGATTA+TGG - chr1.1:72080301-72080320 MS.gene006263:intron 40.0%
ACTCATGGAATTGATGCAAC+TGG - chr1.1:72079895-72079914 MS.gene006263:CDS 40.0%
ACTCTTCACATGATCAAGGT+TGG - chr1.1:72082436-72082455 MS.gene006263:intron 40.0%
AGTGAACTAAGACTCCAAGT+TGG - chr1.1:72080866-72080885 MS.gene006263:intron 40.0%
ATCAAAGATTCATGGGTGTG+TGG + chr1.1:72082137-72082156 None:intergenic 40.0%
ATCCACTCTTCACATGATCA+AGG - chr1.1:72082432-72082451 MS.gene006263:intron 40.0%
ATGAAGTCAAGCTACCAATG+TGG + chr1.1:72082549-72082568 None:intergenic 40.0%
CAAATCAAGTTCACATGGGA+GGG - chr1.1:72085009-72085028 MS.gene006263:CDS 40.0%
CAATAGTTTCAAGGGAGTGA+AGG - chr1.1:72081374-72081393 MS.gene006263:intron 40.0%
CAATGCTACATAGCATGTTG+TGG + chr1.1:72084936-72084955 None:intergenic 40.0%
CATGTGAAGAGTGGATGTAT+TGG + chr1.1:72082428-72082447 None:intergenic 40.0%
CATTTCTTGCAACTCTTGAG+TGG + chr1.1:72082330-72082349 None:intergenic 40.0%
CTATGATTATGGTTGCCCAA+AGG + chr1.1:72083458-72083477 None:intergenic 40.0%
CTCTTCACATGATCAAGGTT+GGG - chr1.1:72082437-72082456 MS.gene006263:intron 40.0%
CTGACTATGCCAATTTCAAC+AGG + chr1.1:72080136-72080155 None:intergenic 40.0%
CTGTAGTTCGATGTTGTCAT+TGG + chr1.1:72081164-72081183 None:intergenic 40.0%
CTGTTGAAATTGGCATAGTC+AGG - chr1.1:72080134-72080153 MS.gene006263:intron 40.0%
GCATCCGAATTTAATTCCTC+TGG - chr1.1:72080443-72080462 MS.gene006263:intron 40.0%
GCTAGTGAAAGTAAGACTGA+AGG - chr1.1:72081658-72081677 MS.gene006263:intron 40.0%
GCTGTTATGACGGTAAAGAT+TGG + chr1.1:72083630-72083649 None:intergenic 40.0%
GGAGTTAGATCTCAGTTCAT+TGG - chr1.1:72080403-72080422 MS.gene006263:intron 40.0%
GTGATTGGAAGAAACAATGC+AGG - chr1.1:72081112-72081131 MS.gene006263:intron 40.0%
GTTATGACGGTAAAGATTGG+TGG + chr1.1:72083627-72083646 None:intergenic 40.0%
TCAGACGCAGTTAGAATTGT+TGG - chr1.1:72082083-72082102 MS.gene006263:intron 40.0%
TCATCCATCTACATTGCTCT+AGG - chr1.1:72083872-72083891 MS.gene006263:intron 40.0%
TCATCCCGTCCTGTAAATAA+GGG + chr1.1:72082486-72082505 None:intergenic 40.0%
TCTGCAATGTGAAGTGTGAA+TGG - chr1.1:72083157-72083176 MS.gene006263:intron 40.0%
TCTTCACATGATCAAGGTTG+GGG - chr1.1:72082438-72082457 MS.gene006263:intron 40.0%
TGAAGTCAAGCTACCAATGT+GGG + chr1.1:72082548-72082567 None:intergenic 40.0%
TGCAAATTTGTGAGCTTCTG+AGG + chr1.1:72081701-72081720 None:intergenic 40.0%
TGGCCAAATCAAGTTCACAT+GGG - chr1.1:72085005-72085024 MS.gene006263:CDS 40.0%
TGTAAGAAAAGGAACTGGCT+TGG - chr1.1:72080486-72080505 MS.gene006263:intron 40.0%
TGTCAAGAGAAAATGACCTG+TGG + chr1.1:72081608-72081627 None:intergenic 40.0%
TGTGATGAAAAACGTTCCAC+AGG - chr1.1:72084728-72084747 MS.gene006263:intron 40.0%
TGTTGTCAATGAGGGTCTAA+TGG - chr1.1:72080775-72080794 MS.gene006263:intron 40.0%
TTAGACCCTCATTGACAACA+AGG + chr1.1:72080775-72080794 None:intergenic 40.0%
! ACGCAAATTTTGCATCCCTT+TGG - chr1.1:72083439-72083458 MS.gene006263:intron 40.0%
! CGCAAATTTTGCATCCCTTT+GGG - chr1.1:72083440-72083459 MS.gene006263:intron 40.0%
! TTGGAACAGGCTTTAGTTGT+TGG - chr1.1:72083388-72083407 MS.gene006263:intron 40.0%
! TTGTTGGTGTTCCTTCATTC+AGG - chr1.1:72083404-72083423 MS.gene006263:intron 40.0%
!! ACATTCCTCTCTCTAAGACA+TGG - chr1.1:72082399-72082418 MS.gene006263:intron 40.0%
!! TGGTTTGTTTGTTTGCACAC+TGG - chr1.1:72084579-72084598 MS.gene006263:CDS 40.0%
!! TGTAGCCTTGTTGTCAATGA+GGG - chr1.1:72080767-72080786 MS.gene006263:intron 40.0%
!! TTGTAGCCTTGTTGTCAATG+AGG - chr1.1:72080766-72080785 MS.gene006263:intron 40.0%
ACGCGTGTTCTTGCTTTACA+TGG - chr1.1:72080284-72080303 MS.gene006263:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG + chr1.1:72080264-72080283 None:intergenic 45.0%
CAATTCTAACTGCGTCTGAG+TGG + chr1.1:72082082-72082101 None:intergenic 45.0%
CACTAACTCCCTTCACTTGT+GGG + chr1.1:72084961-72084980 None:intergenic 45.0%
CAGTTTGCGACAAACCACTT+AGG - chr1.1:72081181-72081200 MS.gene006263:intron 45.0%
CATCCCGTCCTGTAAATAAG+GGG + chr1.1:72082485-72082504 None:intergenic 45.0%
CCAAATCAAGTTCACATGGG+AGG - chr1.1:72085008-72085027 MS.gene006263:CDS 45.0%
CCTCCCATGTGAACTTGATT+TGG + chr1.1:72085011-72085030 None:intergenic 45.0%
CGTCATAACAGCGCAATCAA+CGG - chr1.1:72083638-72083657 MS.gene006263:intron 45.0%
CTCATCCCGTCCTGTAAATA+AGG + chr1.1:72082487-72082506 None:intergenic 45.0%
GAATGGTTGGGGAAGAATAG+TGG + chr1.1:72084478-72084497 None:intergenic 45.0%
GATGTTCAATGGAAGACCAG+AGG + chr1.1:72080462-72080481 None:intergenic 45.0%
GCAAATTCTCTTCATCCAGG+AGG - chr1.1:72083596-72083615 MS.gene006263:intron 45.0%
GGCAAAACCATCAAAAGGGA+GGG + chr1.1:72083507-72083526 None:intergenic 45.0%
GTGGCCAAATCAAGTTCACA+TGG - chr1.1:72085004-72085023 MS.gene006263:CDS 45.0%
TAAAGCCTGTTCCAACTAGG+TGG + chr1.1:72083383-72083402 None:intergenic 45.0%
TACAAGAGCAACTCCAGTGT+TGG + chr1.1:72082685-72082704 None:intergenic 45.0%
TACAGCAAATGGGGTGCATA+TGG - chr1.1:72082887-72082906 MS.gene006263:intron 45.0%
TACCAGTGACAATAGCAGTG+AGG + chr1.1:72079921-72079940 None:intergenic 45.0%
TCAGGCCTAAAGCTACTACA+AGG + chr1.1:72080062-72080081 None:intergenic 45.0%
TCCGTGAAAATTGTGAGGGT+GGG - chr1.1:72081329-72081348 MS.gene006263:intron 45.0%
TCTCAGACTCTCAGTGATCA+CGG + chr1.1:72084089-72084108 None:intergenic 45.0%
TGGCAAAACCATCAAAAGGG+AGG + chr1.1:72083508-72083527 None:intergenic 45.0%
TTCCGTGAAAATTGTGAGGG+TGG - chr1.1:72081328-72081347 MS.gene006263:CDS 45.0%
TTCGCAACTAGAACCAACAC+TGG - chr1.1:72082669-72082688 MS.gene006263:intron 45.0%
! AGGTCCCCTTATTTACAGGA+CGG - chr1.1:72082478-72082497 MS.gene006263:intron 45.0%
! CGTTGATTGCGCTGTTATGA+CGG + chr1.1:72083640-72083659 None:intergenic 45.0%
! GGGATGCTTCAACTTTTCAC+AGG - chr1.1:72082458-72082477 MS.gene006263:intron 45.0%
! TAAGGTGCTTCCATGGATGT+AGG + chr1.1:72082229-72082248 None:intergenic 45.0%
! TCACAGGTCCCCTTATTTAC+AGG - chr1.1:72082474-72082493 MS.gene006263:intron 45.0%
!! ATGTTAACAGGAGCATCCAG+TGG - chr1.1:72080245-72080264 MS.gene006263:intron 45.0%
!! TTGTAGTAGCTTTAGGCCTG+AGG - chr1.1:72080061-72080080 MS.gene006263:intron 45.0%
!!! AAGGGGTATCTGGGTTTTCA+TGG - chr1.1:72079851-72079870 MS.gene006263:CDS 45.0%
ACTAGGTGGAGTTGGAATGG+AGG + chr1.1:72083369-72083388 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG - chr1.1:72084949-72084968 MS.gene006263:intron 50.0%
AGCCGTATGACGTGTGTGTT+TGG + chr1.1:72081477-72081496 None:intergenic 50.0%
ATGTGGCCATTCAGCAGGAA+AGG - chr1.1:72079832-72079851 MS.gene006263:CDS 50.0%
ATTGTGAGGGTGGGGAACTT+TGG - chr1.1:72081338-72081357 MS.gene006263:intron 50.0%
CAACTCCACCTAGTTGGAAC+AGG - chr1.1:72083375-72083394 MS.gene006263:intron 50.0%
CCAACTAGGTGGAGTTGGAA+TGG + chr1.1:72083372-72083391 None:intergenic 50.0%
CCACAAGTGAAGGGAGTTAG+TGG - chr1.1:72084959-72084978 MS.gene006263:intron 50.0%
CCACTAACTCCCTTCACTTG+TGG + chr1.1:72084962-72084981 None:intergenic 50.0%
CCATTCCAACTCCACCTAGT+TGG - chr1.1:72083369-72083388 MS.gene006263:intron 50.0%
CCGTGAAAATTGTGAGGGTG+GGG - chr1.1:72081330-72081349 MS.gene006263:intron 50.0%
CGCCAAACACACACGTCATA+CGG - chr1.1:72081472-72081491 MS.gene006263:intron 50.0%
CGTATGACGTGTGTGTTTGG+CGG + chr1.1:72081474-72081493 None:intergenic 50.0%
CTAGGTGGAGTTGGAATGGA+GGG + chr1.1:72083368-72083387 None:intergenic 50.0%
CTGTTCCAACTAGGTGGAGT+TGG + chr1.1:72083377-72083396 None:intergenic 50.0%
CTTCCATGGATGTAGGCAAG+AGG + chr1.1:72082222-72082241 None:intergenic 50.0%
GATACCCCTTTCCTGCTGAA+TGG + chr1.1:72079841-72079860 None:intergenic 50.0%
GCATTGCACCCACAAGTGAA+GGG - chr1.1:72084950-72084969 MS.gene006263:intron 50.0%
GCTGCCCCCTACATTTAGAT+AGG + chr1.1:72084914-72084933 None:intergenic 50.0%
GGCAACCATGTCTTAGAGAG+AGG + chr1.1:72082407-72082426 None:intergenic 50.0%
GGGTGTGTGGCTAACTTTGA+TGG + chr1.1:72082124-72082143 None:intergenic 50.0%
GTATGACGTGTGTGTTTGGC+GGG + chr1.1:72081473-72081492 None:intergenic 50.0%
TAGGTGGAGTTGGAATGGAG+GGG + chr1.1:72083367-72083386 None:intergenic 50.0%
TATGACGTGTGTGTTTGGCG+GGG + chr1.1:72081472-72081491 None:intergenic 50.0%
TGTGGCCATTCAGCAGGAAA+GGG - chr1.1:72079833-72079852 MS.gene006263:CDS 50.0%
! ACATGGGAGGGATGCTGATT+TGG - chr1.1:72085021-72085040 MS.gene006263:CDS 50.0%
! CCCCACCCTCACAATTTTCA+CGG + chr1.1:72081333-72081352 None:intergenic 50.0%
! GGTCCCCTTATTTACAGGAC+GGG - chr1.1:72082479-72082498 MS.gene006263:intron 50.0%
!! ACAGGAGCATCCAGTGGTAT+TGG - chr1.1:72080251-72080270 MS.gene006263:intron 50.0%
!! GGTCTAATGGTGTTGCTGAG+TGG - chr1.1:72080788-72080807 MS.gene006263:intron 50.0%
!! TCAGCAGGAAAGGGGTATCT+GGG - chr1.1:72079842-72079861 MS.gene006263:CDS 50.0%
!! TTCAGCAGGAAAGGGGTATC+TGG - chr1.1:72079841-72079860 MS.gene006263:CDS 50.0%
ACTGCGTCTGAGTGGTGCAT+AGG + chr1.1:72082074-72082093 None:intergenic 55.0%
AGGTGGAGTTGGAATGGAGG+GGG + chr1.1:72083366-72083385 None:intergenic 55.0%
ATGACGTGTGTGTTTGGCGG+GGG + chr1.1:72081471-72081490 None:intergenic 55.0%
GCACCTCTTGCCTACATCCA+TGG - chr1.1:72082216-72082235 MS.gene006263:intron 55.0%
GGCCTCACTGCTATTGTCAC+TGG - chr1.1:72079916-72079935 MS.gene006263:CDS 55.0%
GTGGCCATTCAGCAGGAAAG+GGG - chr1.1:72079834-72079853 MS.gene006263:CDS 55.0%
! AGATTGGTGGCAATGCCTCC+TGG + chr1.1:72083614-72083633 None:intergenic 55.0%
! GCAGTCTCCCTCCCTTTTGA+TGG - chr1.1:72083497-72083516 MS.gene006263:intron 55.0%
TGACGTGTGTGTTTGGCGGG+GGG + chr1.1:72081470-72081489 None:intergenic 60.0%
GTGTGTGTTTGGCGGGGGGA+GGG + chr1.1:72081466-72081485 None:intergenic 65.0%
TGTGTGTTTGGCGGGGGGAG+GGG + chr1.1:72081465-72081484 None:intergenic 65.0%
CGTGTGTGTTTGGCGGGGGG+AGG + chr1.1:72081467-72081486 None:intergenic 70.0%
GTGTGTTTGGCGGGGGGAGG+GGG + chr1.1:72081464-72081483 None:intergenic 70.0%
TGTGTTTGGCGGGGGGAGGG+GGG + chr1.1:72081463-72081482 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72079832 72085090 72079832 ID=MS.gene006263
chr1.1 mRNA 72079832 72085090 72079832 ID=MS.gene006263.t1;Parent=MS.gene006263
chr1.1 exon 72084985 72085090 72084985 ID=MS.gene006263.t1.exon1;Parent=MS.gene006263.t1
chr1.1 CDS 72084985 72085090 72084985 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72084436 72084667 72084436 ID=MS.gene006263.t1.exon2;Parent=MS.gene006263.t1
chr1.1 CDS 72084436 72084667 72084436 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72083720 72083799 72083720 ID=MS.gene006263.t1.exon3;Parent=MS.gene006263.t1
chr1.1 CDS 72083720 72083799 72083720 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72083158 72083311 72083158 ID=MS.gene006263.t1.exon4;Parent=MS.gene006263.t1
chr1.1 CDS 72083158 72083311 72083158 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72081958 72082036 72081958 ID=MS.gene006263.t1.exon5;Parent=MS.gene006263.t1
chr1.1 CDS 72081958 72082036 72081958 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72081263 72081347 72081263 ID=MS.gene006263.t1.exon6;Parent=MS.gene006263.t1
chr1.1 CDS 72081263 72081347 72081263 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72080173 72080219 72080173 ID=MS.gene006263.t1.exon7;Parent=MS.gene006263.t1
chr1.1 CDS 72080173 72080219 72080173 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
chr1.1 exon 72079832 72079996 72079832 ID=MS.gene006263.t1.exon8;Parent=MS.gene006263.t1
chr1.1 CDS 72079832 72079996 72079832 ID=cds.MS.gene006263.t1;Parent=MS.gene006263.t1
Gene Sequence

>MS.gene006263

ATGTGGCCATTCAGCAGGAAAGGGGTATCTGGGTTTTCATGGAAGTCAACAGCTGAAGAAGTTACTCATGGAATTGATGCAACTGGCCTCACTGCTATTGTCACTGGTATATCATCCTTTATTACTCTTTCTTACCCTTTTTGTTTATTTTTCATTTTTCAAGCATGCCCTTTTGTTCAATAGTAGTTTTTATTGCTTCTATGTTGCTAAGTTATTTGGAATTAATACCTTGTAGTAGCTTTAGGCCTGAGGAGTGATTTACAAGCTTTTTTTTATGAAGATCCAAAACTAAAATTGATTTCCTGTTGAAATTGGCATAGTCAGGACTTATTTGTTTATATTGTATGTGATTATGCCTGCTACATCAAATTCATGCAACTGGCTATGATTAATTATTATATGGATATGATGGTATGTTAACAGGAGCATCCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTACATGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTAATGCTAATAATACCAGAGAAGCAATACTTAAAGAGATTCCATCAGCAAAAATAGATGTGATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTTGCATCCGAATTTAATTCCTCTGGTCTTCCATTGAACATCTTGATGTAAGAAAAGGAACTGGCTTGGATCTTATTATCAATTTTATTTAGGCAAAACTGCATTGGGAATCTTTTTAATTTAATTTTAAGTTTCAAACAGGTCAAATTAGTTAATTTTTTCCACTGAAAGTTAGTCTTTTATGTTTAAAAACGTCAACAATGTTTGGCCAAATTTCGTTTTTAATCTATATATGTTATCAGAAGTCTTACTTGTGCATTTTAAAAAGTAAATTACATTTTTAACCCATCAAATTTAAAATGATCTTTTTTAGTTTTTATCTAAGATTGTAGCCTTGTTGTCAATGAGGGTCTAATGGTGTTGCTGAGTGGTGAAAAATTATTCATCGTATATCGTTCAGTGATCATGTAAACAAATTTGTACATAAGTGAACTAAGACTCCAAGTTGGTTCAACACTGTAAACATTTTTAAAGATAATGGAGAAATTTGACAGTAAAGAGAAATGACCCCTGATGCAGTTTTGCCTTTTATTTACTATTTATTTTGACTCCTGGTTTCTATTAAAGTTGTTAATTACTTGTTCTGTCTCGCCATGAATGTCTATGTTCCAGTACTGATCATGATCTTTAATGGAAAACCAGTAGTAGTGTTGTTTTCTGATCTGTTTATTTGTGATTGGAAGAAACAATGCAGGAGTCATGGCATGCCCTTTCATGCTTTCCAATGACAACATCGAACTACAGTTTGCGACAAACCACTTAGGTATTTGTGAAACATGTTAAATTCTTTATTCATTTGAAATTTCATTTCATGACTGATAGTGATATTACTTCAAATTTACTAATTTTGTGCTTTTTATAACATGAATTACTTGTCAATTGCGATCTTTCCGTGAAAATTGTGAGGGTGGGGAACTTTGGCACTCACAAGTCACAATAGTTTCAAGGGAGTGAAGGCCATTAGATTTATTTATGTCTGATTCAGATAATCAAGAATTAATAGATGAAAAGTGAGAGCTTCCCCCCTCCCCCCGCCAAACACACACGTCATACGGCTATAAATTATCGAGAGTTTGAGACATGAAATCTATGTGTAACTACACTTATTATCTGTCTCAACTTATATAGCTGGGTTATGAACATTCTGTTTTTATGTAATATAATTCCACAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGAAGAAAACAGCTAGTGAAAGTAAGACTGAAGGAAGAATTGTTAATGTCTCCTCAGAAGCTCACAAATTTGCATATTCTGAAGGAATCCGTTTTGACAAAATTAATGAACAATCAAGGTAATAGGTAGCTTCATTTCAAATCATGATATGTGCTGAAAGTTTTTAAAAATGGAAGAGGAATTTATTGTGTATGTGTGAAAGAGTAATTATAACGGAACTTCAATTTTATTTTCTTGGGCAATCAATGTTACTATTGGTTTGATTCTGAAAAGGATATAGTTCAATATGAAGTTTGGGATATGTACTTTTTAGTTTGCTGTGAGTCTAGGAGAAGATGCTAGCTTAAACTTTCGACACAAATAACCTGCTGATACGATTTTGCTTTTAGATCAGACAGCTATTGTCTTAGTCTTGTAAACTGTACCTATGCACCACTCAGACGCAGTTAGAATTGTTGGCGAAAGCAGCACACACCATCAAAGTTAGCCACACACCCATGAATCTTTGATGTAAAACACGTAAGCACACTGCAAAGAAAGCAATAGAAAACACAGATTTATGTGAATTGGCACCTCTTGCCTACATCCATGGAAGCACCTTAACAAATATATTCTTCATCTCAAATAAAATTAAAAGAATCTATAGCCGAGCTCAATATGTATATCACTCTACAATACTCCCACTCAAGAGTTGCAAGAAATGATAATACGCACATCTCAGTGATCTCCTCACACATAAAATGATCACACACACATTCCTCTCTCTAAGACATGGTTGCCAATACATCCACTCTTCACATGATCAAGGTTGGGGATGCTTCAACTTTTCACAGGTCCCCTTATTTACAGGACGGGATGAGACTCTCATTCATGAATATAACATAGTGGACATTATTATCCCACATTGGTAGCTTGACTTCATTTCTCTAAGAATCTCGTTACATCTTTTCACCTCTTGAAATGTCTCTTTTAAATTTCCACCACTTACATGATATTTATTATTGTTTGGAAATTATAACTGATTCGCAACTAGAACCAACACTGGAGTTGCTCTTGTAGTACTTGTTGAAAGAAGAGGTGTTATGTGTATATAGTTATGTTTAATTCCTTGTTTACAATTGAAACAGTTGGCTCATATTAGTTGCATGAAGAATTAAGAGTGGAAATATATTTCTGTAGTATTTGTCAACTGGAGTAATGTTATTCCAATTTAATTATGTTTGCTTCCTTTGTATACAGTTACAGCAAATGGGGTGCATATGGACAGTCAAAGCTTGCTAATATTTTACATGCAAACCAACTTACAAAACATTTCAAGGTATGCTATGTTTACTTCTACTATGTAGTGGTGTTACTTATTTACGTGTTATCTAGTGAAGTAGTTTATTGATACTGTTATTATCTCTCATTATTTCAACTTCTGGATGATTAATAAGAAGCAGATGCTCAGAAAAAGAAATAGATGTGTAGCATTAAATCTGCATATTTCTACTGTGGAAAATTACTTTCTTCTGCAATGTGAAGTGTGAATGGCAAAATTTTGATTTAGAGTTACTTGTTTTTTTTTGCAGCATTTGTGTTCAAACTACACTTAAAATCATAATCCTTTTTACAGCATCTGCTATCTTAATCTCCTATCAATTGGTGACTAGTTTTTTTATTATAAAATATCAATGACCAAATATTGTTAAACATCAGCTTGAGTGGAAGTTTTATCCCCCTCCATTCCAACTCCACCTAGTTGGAACAGGCTTTAGTTGTTGGTGTTCCTTCATTCAGGTCTCTGAAAAAGACGCAAATTTTGCATCCCTTTGGGCAACCATAATCATAGAAACATTCTGTTTTCTTTCGCAGTCTCCCTCCCTTTTGATGGTTTTGCCACATTAATTATCTTTGATTTATAACATTATTTGTTACATCTTGATCAGGATGATGGTATGAATATCATTGCAAATTCTCTTCATCCAGGAGGCATTGCCACCAATCTTTACCGTCATAACAGCGCAATCAACGGTAACTATCATAGTATTATACTATTCAGGTTGTCTGTGAATTATACAAGTCCTTTGATGTGGCATTCTAAATGATTTGTTCTGTATCATCTACCGTTATGTGACACTATCTTTCTTGGTTGCTTCATTTTTTTGGTATTTCATGTTAATTTCTTGTTACTTGTCGTAAAATTTTTTTTGGTGGATTTTACAAAATTACAATGATACAAGCTCTCATCCATCTACATTGCTCTAGGTGTTTTATCCTATATTTGGTACATGATATTGTTCAGAACCCACCATCTAATAATATTATGATTAAGGTTGGTCGTGCCCCCCTCTGAATATTGAAAAATTCAGACTTTTTTTTTTTTATCAAGTATGAATATAGACATGTTAAAGACCGCGATCAACCTTTTAAGCTTTAACATCATCGGAAACATGATTACCGTGATCACTGAGAGTCTGAGACAAAAAGACATTGTACTCCCTCCATACTACAATATTAGTTTTATATTCCTATTATACTCCTAAGTCTAACTATTTTATTTGTTTGTACTCTTTTTATTTCAATTCTTGTAATTAATCTTTCTTATACTATTAGTGAAGGGTAATTTTGTAAAGTAAGCCATACATTTTATTTTTTTGACAAGAAGCCGTACGTTTTATAAAATCTACAAAATTAATTACATTTCTTAATTCGTGCATTATTTGCTAAAGTGACTAATACTGAAGGACAAAGTGAGTAATTTATAGCACTTGATTGGTACACCAACTCATCCATAATGTATAACAACAATAAAATCATCCCAGAAGTTAGATACTTTGTCAATCTCTCCACTATTCTTCCCCAACCATTCATACATTATTACTTTATTGTCATTAAGCACTTTATTGTGTTTATCTGACTACTACTATAAATACATTGATTTTGAATTGGGTGGTTTGTTTGTTTGCACACTGGCATTCTGCAGTGTCCATAAAATTTGTTTGCTTTTTCATGTGTAGATATTGACAGTAGCTGAGTTTTATAGATATACTATTGATGTTTGATTTATGCAACAGGTATAGTAAATGTGGTTGGCAAACTTGTGATGAAAAACGTTCCACAGGTATGTCAAAATCGTTATGACCTACTATTTATAAATGTGAGGGGTCATGTCAAATAAATATCGGTTGTTATAAACATTTATTAATTAACTAAACATAGATTAGAAGCTTTCCGATATTTCACTTTTCTTAGCTTAGTAATTTAGTTGAATGTTAACTTTCTCCTATCTAAATGTAGGGGGCAGCCACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAATATTTTTCAGACAATAATGTGGCCAAATCAAGTTCACATGGGAGGGATGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGGTCAAGGACAAATAG
Protein sequence

>MS.gene006263.t1

MWPFSRKGVSGFSWKSTAEEVTHGIDATGLTAIVTGASSGIGVETTRVLALHGVHVIMAVRNKVNANNTREAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGLPLNILINNAGVMACPFMLSNDNIELQFATNHLGHFLLTNLLLDTMKKTASESKTEGRIVNVSSEAHKFAYSEGIRFDKINEQSSYSKWGAYGQSKLANILHANQLTKHFKDDGMNIIANSLHPGGIATNLYRHNSAINGIVNVVGKLVMKNVPQGAATTCYVALHPQVKGVSGEYFSDNNVAKSSSHGRDADLAKKLWDFSMNLVKDK