AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006265

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006265.t1 MTR_1g100395 94.551 312 17 0 221 532 4 315 0.0 608
MS.gene006265.t1 MTR_1g100335 89.423 312 33 0 221 532 4 315 0.0 566
MS.gene006265.t1 MTR_1g100315 82.051 312 56 0 221 532 4 315 0.0 527
MS.gene006265.t1 MTR_1g100305 78.205 312 68 0 221 532 4 315 0.0 515
MS.gene006265.t1 MTR_8g098415 70.684 307 89 1 222 528 6 311 1.38e-157 451
MS.gene006265.t1 MTR_8g098415 71.053 304 87 1 222 525 6 308 1.80e-156 449
MS.gene006265.t1 MTR_1g100335 90.535 243 23 0 221 463 4 246 4.94e-154 441
MS.gene006265.t1 MTR_1g100335 90.535 243 23 0 221 463 4 246 9.06e-154 440
MS.gene006265.t1 MTR_6g053550 71.336 307 85 2 227 530 18 324 3.44e-152 438
MS.gene006265.t1 MTR_1g100800 90.870 230 16 2 1 229 1 226 4.31e-138 399
MS.gene006265.t1 MTR_8g098415 70.079 254 76 0 275 528 1 254 3.84e-127 372
MS.gene006265.t1 MTR_1g068970 58.689 305 126 0 225 529 13 317 3.65e-126 372
MS.gene006265.t1 MTR_7g099850 58.824 306 125 1 225 529 13 318 1.32e-124 368
MS.gene006265.t1 MTR_6g053600 69.084 262 78 2 227 485 4 265 1.96e-121 358
MS.gene006265.t1 MTR_8g098415 75.349 215 52 1 222 436 6 219 3.61e-112 332
MS.gene006265.t1 MTR_1g068970 56.000 250 110 0 280 529 1 250 4.47e-97 295
MS.gene006265.t1 MTR_3g077410 46.602 309 161 2 225 529 13 321 2.39e-89 278
MS.gene006265.t1 MTR_4g105310 45.955 309 163 2 225 529 24 332 6.73e-85 267
MS.gene006265.t1 MTR_8g099995 44.695 311 168 3 225 531 13 323 4.37e-83 262
MS.gene006265.t1 MTR_4g105310 48.148 243 122 2 225 463 24 266 6.03e-67 218
MS.gene006265.t1 MTR_8g094540 35.912 181 112 2 53 229 34 214 1.45e-30 120
MS.gene006265.t1 MTR_6g081020 36.328 256 145 7 247 492 62 309 5.58e-30 121
MS.gene006265.t1 MTR_3g096890 35.484 186 110 4 53 229 41 225 6.34e-27 110
MS.gene006265.t1 MTR_3g096890 35.484 186 110 4 53 229 105 289 1.00e-25 108
MS.gene006265.t1 MTR_2g079710 29.260 311 185 9 250 529 90 396 1.67e-25 108
MS.gene006265.t1 MTR_1g100345 64.384 73 26 0 250 322 4 76 2.81e-25 100
MS.gene006265.t1 MTR_6g041980 28.839 267 170 6 246 508 66 316 2.77e-23 101
MS.gene006265.t1 MTR_3g091070 28.904 301 166 12 250 529 44 317 5.95e-19 88.6
MS.gene006265.t1 MTR_6g041980 28.571 189 128 2 242 430 62 243 1.90e-17 82.8
MS.gene006265.t1 MTR_3g009190 27.541 305 183 10 250 529 66 357 2.36e-17 84.3
MS.gene006265.t1 MTR_3g009190 27.541 305 183 10 250 529 84 375 3.31e-17 84.0
MS.gene006265.t1 MTR_6g453040 27.213 305 184 10 250 529 44 335 4.09e-17 83.2
MS.gene006265.t1 MTR_3g009190 27.213 305 184 10 250 529 65 356 3.30e-15 77.8
MS.gene006265.t1 MTR_8g022500 31.915 188 86 6 190 363 359 518 1.26e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006265.t1 AT4G11410 69.231 312 96 0 221 532 4 315 6.46e-157 450
MS.gene006265.t1 AT4G23420 68.051 313 99 1 221 532 4 316 2.95e-155 446
MS.gene006265.t1 AT4G23420 68.051 313 99 1 221 532 4 316 2.95e-155 446
MS.gene006265.t1 AT4G23430 66.773 313 103 1 221 532 4 316 1.51e-154 444
MS.gene006265.t1 AT4G23420 68.404 307 96 1 227 532 27 333 2.40e-153 441
MS.gene006265.t1 AT4G23430 66.454 313 102 2 221 532 4 314 2.56e-151 436
MS.gene006265.t1 AT4G23430 63.898 313 102 2 221 532 4 306 1.79e-144 418
MS.gene006265.t1 AT4G23430 63.578 313 101 3 221 532 4 304 2.09e-141 410
MS.gene006265.t1 AT4G23420 69.112 259 79 1 221 478 4 262 5.03e-127 372
MS.gene006265.t1 AT4G23420 74.359 234 60 0 221 454 4 237 2.01e-125 367
MS.gene006265.t1 AT2G37540 56.026 307 135 0 223 529 10 316 4.09e-122 362
MS.gene006265.t1 AT4G11410 71.488 242 69 0 221 462 4 245 2.32e-120 355
MS.gene006265.t1 AT5G02540 58.306 307 128 0 223 529 10 316 2.71e-120 357
MS.gene006265.t1 AT2G37540 59.072 237 97 0 223 459 10 246 2.08e-97 296
MS.gene006265.t1 AT4G24050 44.839 310 168 2 225 531 13 322 5.21e-85 266
MS.gene006265.t1 AT5G50130 46.945 311 161 3 225 531 13 323 2.02e-83 263
MS.gene006265.t1 AT5G50130 46.809 282 149 1 251 531 8 289 2.44e-77 246
MS.gene006265.t1 AT5G50130 46.996 283 148 2 251 531 8 290 4.99e-77 245
MS.gene006265.t1 AT1G64590 45.085 295 159 2 234 525 22 316 4.78e-74 238
MS.gene006265.t1 AT4G24050 45.076 264 140 3 225 485 13 274 2.70e-69 224
MS.gene006265.t1 AT5G50130 46.415 265 138 3 225 485 13 277 4.78e-69 225
MS.gene006265.t1 AT5G50130 46.617 266 137 4 225 485 13 278 1.67e-68 223
MS.gene006265.t1 AT5G50130 48.571 245 123 2 225 466 13 257 1.18e-67 219
MS.gene006265.t1 AT5G50130 48.780 246 122 3 225 466 13 258 3.93e-67 218
MS.gene006265.t1 AT5G52420 46.957 230 111 3 1 228 1 221 4.81e-67 217
MS.gene006265.t1 AT5G50130 46.414 237 125 2 251 485 8 244 1.58e-62 207
MS.gene006265.t1 AT5G50130 46.639 238 124 3 251 485 8 245 5.25e-62 205
MS.gene006265.t1 AT5G23920 38.547 179 106 3 52 228 31 207 2.97e-35 132
MS.gene006265.t1 AT1G27990 38.506 174 102 3 53 221 47 220 1.19e-29 118
MS.gene006265.t1 AT4G27760 28.909 339 198 9 222 529 25 351 1.62e-29 120
MS.gene006265.t1 AT5G54190 28.296 311 188 9 250 529 96 402 4.29e-28 116
MS.gene006265.t1 AT1G03630 32.372 312 177 11 248 529 89 396 1.25e-27 115
MS.gene006265.t1 AT1G03630 32.372 312 177 11 248 529 91 398 1.41e-27 115
MS.gene006265.t1 AT5G53090 31.561 301 181 6 247 529 57 350 2.09e-27 114
MS.gene006265.t1 AT5G53100 30.164 305 183 9 247 529 45 341 2.69e-25 107
MS.gene006265.t1 AT4G09750 29.252 294 186 7 219 508 18 293 3.06e-25 106
MS.gene006265.t1 AT4G27440 28.455 369 218 13 196 529 41 398 9.27e-25 107
MS.gene006265.t1 AT4G27440 28.455 369 218 13 196 529 41 398 9.27e-25 107
MS.gene006265.t1 AT5G54190 25.965 285 177 8 275 529 1 281 3.44e-21 94.4
MS.gene006265.t1 AT5G04070 28.239 301 188 8 250 531 62 353 8.12e-20 91.7
MS.gene006265.t1 AT5G15940 27.961 304 187 11 250 531 63 356 6.22e-19 89.0
MS.gene006265.t1 AT5G15940 27.961 304 187 11 250 531 64 357 6.58e-19 89.0
MS.gene006265.t1 AT5G15940 27.961 304 187 11 250 531 64 357 6.58e-19 89.0
MS.gene006265.t1 AT5G15940 28.761 226 136 7 250 458 64 281 3.08e-14 74.3
MS.gene006265.t1 AT3G59710 29.137 278 152 11 248 491 49 315 3.28e-11 65.1
MS.gene006265.t1 AT3G59710 29.348 276 150 11 248 489 20 284 4.23e-11 64.3
MS.gene006265.t1 AT3G59710 29.137 278 152 11 248 491 30 296 4.42e-11 64.7

Find 99 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGAAAACATAAAGTTTA+AGG 0.192623 1.1:+72106307 None:intergenic
TTCAGGAAGAAAGGGATTTC+TGG 0.209019 1.1:-72105394 MS.gene006265:intron
AGCATAGTGGTTCTTATAAA+AGG 0.221115 1.1:-72106035 MS.gene006265:CDS
CCTTCCCTGTGATTCTCTTT+TGG 0.235273 1.1:+72101677 None:intergenic
TTTCAGCATGAATTTGATTA+AGG 0.259296 1.1:-72101625 MS.gene006265:CDS
TCAATTTCTTGTTCTTCTTT+TGG 0.274467 1.1:+72106591 None:intergenic
GGCTTACACATTTGCATATT+CGG 0.280798 1.1:-72103437 MS.gene006265:CDS
ACAGGAACAAAAGCTCTTAT+TGG 0.282027 1.1:+72106129 None:intergenic
CTGTAGTTCAATGTTGTCTT+TGG 0.287889 1.1:+72104098 None:intergenic
ATTACAAATCCAAAATCTTC+AGG 0.292734 1.1:+72106423 None:intergenic
CACTAATTCCCTTCACTTGT+GGG 0.304068 1.1:+72101727 None:intergenic
GCGTGGTGTCCATGTGATTA+TGG 0.305515 1.1:-72104919 MS.gene006265:CDS
AGCACTTGCTGTGGCTAATA+TGG 0.317291 1.1:-72105998 MS.gene006265:CDS
CTATTGGTTATTACCTTGAT+TGG 0.330943 1.1:+72103386 None:intergenic
CACCAATCTTTCCCGCCATA+TGG 0.337645 1.1:-72102683 MS.gene006265:CDS
CTGATTTGGCTAAGAAACTT+TGG 0.344972 1.1:-72101650 MS.gene006265:CDS
GATTATGGCTGTTAGAAATA+TGG 0.346372 1.1:-72104904 MS.gene006265:CDS
ACAGGGAAGGGACGCTGATT+TGG 0.349751 1.1:-72101664 MS.gene006265:CDS
AAAGGGATTTCTGGATTCTC+AGG 0.351168 1.1:-72105385 MS.gene006265:CDS
TTCCTGTTCTTTATAATTCA+AGG 0.354426 1.1:-72106113 MS.gene006265:CDS
GGAAGAATTGTTAATGTCTC+TGG 0.379542 1.1:-72103463 MS.gene006265:CDS
ATGGTTAGCCCTGAAGATTT+TGG 0.385009 1.1:-72106432 MS.gene006265:CDS
ACCCATATGGCGGGAAAGAT+TGG 0.391956 1.1:+72102681 None:intergenic
TGATTTGGCTAAGAAACTTT+GGG 0.394235 1.1:-72101649 MS.gene006265:CDS
CAGCTAAACAATTGAGTTGT+CGG 0.396906 1.1:+72106481 None:intergenic
CTCCTTGAATTATAAAGAAC+AGG 0.405168 1.1:+72106111 None:intergenic
ACAGGAGCAACCAGTGGTAT+TGG 0.407904 1.1:-72104969 MS.gene006265:intron
CCACTAATTCCCTTCACTTG+TGG 0.410260 1.1:+72101726 None:intergenic
TACAACAAACAGAGTGCATA+TGG 0.418172 1.1:-72102897 MS.gene006265:CDS
TGGAATATTTGAAGGTGATA+AGG 0.427078 1.1:-72106241 MS.gene006265:CDS
ACAGGTATAATACAGGTGAT+TGG 0.428022 1.1:-72101990 MS.gene006265:intron
CAGGTATAATACAGGTGATT+GGG 0.437343 1.1:-72101989 MS.gene006265:CDS
TCTGGTGGAGTTGGACCAAC+TGG 0.442420 1.1:-72106630 MS.gene006265:CDS
ACAAAATTAATGACCAATCA+AGG 0.448930 1.1:-72103399 MS.gene006265:intron
TATCAAAGCAGCAATACTTA+AGG 0.461173 1.1:-72104868 MS.gene006265:CDS
CCACATACCTAAGTGGTTTG+TGG 0.461540 1.1:+72104071 None:intergenic
GAGGCGTCTTGCAAGCTCAT+TGG 0.461840 1.1:+72102845 None:intergenic
AAGACCAGAGGAGTTGAATT+CGG 0.463073 1.1:+72104773 None:intergenic
TTACATCTTGATCAGGCTGA+TGG 0.465863 1.1:-72102748 MS.gene006265:intron
CCATGTAAAATATATGCTAT+AGG 0.465903 1.1:+72106261 None:intergenic
AGATTGGTGAGAATGATTCC+TGG 0.477751 1.1:+72102697 None:intergenic
CCACAAGTGAAGGGAATTAG+TGG 0.477838 1.1:-72101726 MS.gene006265:CDS
ACTCATGGAATTGATGCAAC+TGG 0.480827 1.1:-72105340 MS.gene006265:CDS
GCATCCGAATTCAACTCCTC+TGG 0.483856 1.1:-72104777 MS.gene006265:CDS
GGAGTTAGATCTCAGTTCAA+TGG 0.492329 1.1:-72104817 MS.gene006265:CDS
ATGTGGCCATTCAGGAAGAA+AGG 0.492857 1.1:-72105403 MS.gene006265:intron
TTGTCTTTGGACAGCATGAA+AGG 0.496194 1.1:+72104111 None:intergenic
ACTATGCTCTTCACCAACCT+TGG 0.496587 1.1:+72106050 None:intergenic
TTACAAATCCAAAATCTTCA+GGG 0.499930 1.1:+72106424 None:intergenic
CAGTTTGCCACAAACCACTT+AGG 0.502711 1.1:-72104078 MS.gene006265:intron
TCTTATAAAAGGATTTATGC+TGG 0.505951 1.1:-72106024 MS.gene006265:CDS
ACCAATCTTTCCCGCCATAT+GGG 0.511754 1.1:-72102682 MS.gene006265:CDS
TACATCTTGATCAGGCTGAT+GGG 0.514593 1.1:-72102747 MS.gene006265:intron
CAGCATGAATTTGATTAAGG+AGG 0.517327 1.1:-72101622 MS.gene006265:CDS
TGTGGCCAAAAGAGAATCAC+AGG 0.521249 1.1:-72101682 MS.gene006265:CDS
TACCGTGGATTACACCCATA+TGG 0.529890 1.1:+72102668 None:intergenic
AATTGAGTTGTCGGAATGAG+AGG 0.532641 1.1:+72106490 None:intergenic
TACACATTTGCATATTCGGA+AGG 0.534970 1.1:-72103433 MS.gene006265:CDS
CTCAGCTAAAATTGACGTCA+TGG 0.538413 1.1:-72104838 MS.gene006265:CDS
ATTGTGAATTCTCTTCATCC+AGG 0.539076 1.1:-72102715 MS.gene006265:CDS
TGTGGCCATTCAGGAAGAAA+GGG 0.539455 1.1:-72105402 MS.gene006265:intron
TTCAGGGCTAACCATGCCAC+TGG 0.540431 1.1:+72106440 None:intergenic
GGTCTCACTTCTATTGTCAC+TGG 0.543290 1.1:-72105319 MS.gene006265:intron
TTATGCAACAGGTATAATAC+AGG 0.545042 1.1:-72101997 MS.gene006265:intron
CGCCATATGGGTGTAATCCA+CGG 0.545789 1.1:-72102670 MS.gene006265:intron
AGAGATGAGATTTCCAAGGT+TGG 0.547974 1.1:-72106063 MS.gene006265:CDS
AGCATTGCACCCACAAGTGA+AGG 0.549189 1.1:-72101736 MS.gene006265:CDS
ACTGCTGAACAAGTTACTCA+TGG 0.551436 1.1:-72105355 MS.gene006265:CDS
TGTCTTTGGACAGCATGAAA+GGG 0.554321 1.1:+72104112 None:intergenic
GCACACGAAAGTAAGAAAGA+AGG 0.557161 1.1:-72103484 MS.gene006265:CDS
GTAATTGCAAGAAACAATGC+AGG 0.558972 1.1:-72104147 MS.gene006265:intron
CAATGCTACATAGCAGGTTG+TGG 0.563645 1.1:+72101752 None:intergenic
TGAGCTTGCAAGACGCCTCA+AGG 0.566834 1.1:-72102841 MS.gene006265:intron
TGTCTTATCAGCCAGTGGCA+TGG 0.570622 1.1:-72106451 MS.gene006265:CDS
ATATTGCCCACATACCTAAG+TGG 0.571755 1.1:+72104064 None:intergenic
TCTTGATCAGGCTGATGGGG+TGG 0.576337 1.1:-72102743 MS.gene006265:intron
GTGGATTACACCCATATGGC+GGG 0.577534 1.1:+72102672 None:intergenic
CAAAAGAGAATCACAGGGAA+GGG 0.585563 1.1:-72101676 MS.gene006265:CDS
AAGGGATTTCTGGATTCTCA+GGG 0.585889 1.1:-72105384 MS.gene006265:CDS
GTTTAGAGATGAGATTTCCA+AGG 0.593748 1.1:-72106067 MS.gene006265:CDS
GTTGTTGTCTTATCAGCCAG+TGG 0.595119 1.1:-72106456 MS.gene006265:CDS
TCTTACATCAAGATGTTCAA+CGG 0.596176 1.1:+72104750 None:intergenic
TGGGTGCAATGCTACATAGC+AGG 0.602362 1.1:+72101746 None:intergenic
AGTCTCAACTCCAATACCAC+TGG 0.604354 1.1:+72104959 None:intergenic
AATTGTTAATGTCTCTGGAG+AGG 0.607553 1.1:-72103458 MS.gene006265:CDS
AGGCTAATGTCACAGCCAGT+TGG 0.608232 1.1:+72106615 None:intergenic
ACATCTTGATCAGGCTGATG+GGG 0.610650 1.1:-72102746 MS.gene006265:intron
TGCTGGAAGAGCACTTGCTG+TGG 0.614632 1.1:-72106007 MS.gene006265:CDS
CCAAAAGAGAATCACAGGGA+AGG 0.615970 1.1:-72101677 MS.gene006265:CDS
ATATTTGAAGGTGATAAGGA+AGG 0.616957 1.1:-72106237 MS.gene006265:CDS
ACGCGTGTTCTTGCTTTGCG+TGG 0.623338 1.1:-72104936 MS.gene006265:CDS
GCATTGCACCCACAAGTGAA+GGG 0.624705 1.1:-72101735 MS.gene006265:CDS
CGTGGATTACACCCATATGG+CGG 0.632054 1.1:+72102671 None:intergenic
TTCTAACAGCCATAATCACA+TGG 0.652025 1.1:+72104910 None:intergenic
GATGTTCAACGGAAGACCAG+AGG 0.668187 1.1:+72104761 None:intergenic
AAGGTTGGTGAAGAGCATAG+TGG 0.672560 1.1:-72106048 MS.gene006265:CDS
CTGTTCTTTATAATTCAAGG+AGG 0.674362 1.1:-72106110 MS.gene006265:CDS
ATGGTAACAGGAGCAACCAG+TGG 0.692173 1.1:-72104975 MS.gene006265:intron
GTGGCCAAAAGAGAATCACA+GGG 0.763656 1.1:-72101681 MS.gene006265:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATATTATAACAATTATTA+TGG + chr1.1:72103667-72103686 None:intergenic 10.0%
!! TAAAAATAATTGTAAAATGA+TGG + chr1.1:72104372-72104391 None:intergenic 10.0%
!! TCAAATAAATAGTAAATAAA+AGG + chr1.1:72103951-72103970 None:intergenic 10.0%
!!! ATCAATTTTATATATGATTT+AGG + chr1.1:72102708-72102727 None:intergenic 10.0%
!!! TTTTGTATTTTGTTTTTAAA+TGG - chr1.1:72104924-72104943 MS.gene006265:CDS 10.0%
!! AAAACTTTAAATTAAGTTAG+AGG + chr1.1:72103584-72103603 None:intergenic 15.0%
!! AAATTATTATATGGATATGA+TGG - chr1.1:72103251-72103270 MS.gene006265:intron 15.0%
!! AGTAATTAAATAAATTTGAC+AGG - chr1.1:72102488-72102507 MS.gene006265:intron 15.0%
!! ATAATCTTGAAGTTAAATTA+TGG + chr1.1:72103149-72103168 None:intergenic 15.0%
!! GAAACTTTAAATTAAGTTAA+CGG - chr1.1:72103908-72103927 MS.gene006265:intron 15.0%
!! GTAATTAAATAAATTTGACA+GGG - chr1.1:72102489-72102508 MS.gene006265:intron 15.0%
!! TAATTAAATAAATTTGACAG+GGG - chr1.1:72102490-72102509 MS.gene006265:intron 15.0%
!! TACGAGTAAATAAATAATTA+CGG + chr1.1:72105798-72105817 None:intergenic 15.0%
!! TTGTTATAAACGTTTATTAA+GGG - chr1.1:72106374-72106393 MS.gene006265:CDS 15.0%
!!! AAACTTCAATTTTATTTTCT+TGG - chr1.1:72104995-72105014 MS.gene006265:intron 15.0%
!!! AACTTCAATTTTATTTTCTT+GGG - chr1.1:72104996-72105015 MS.gene006265:intron 15.0%
!!! AATGCAATTTACTTTTTAAA+TGG + chr1.1:72103613-72103632 None:intergenic 15.0%
!!! AATTTTATATATGATTTAGG+TGG + chr1.1:72102705-72102724 None:intergenic 15.0%
!!! ATTTTATATATGATTTAGGT+GGG + chr1.1:72102704-72102723 None:intergenic 15.0%
!!! TTATCTGATTATTTTGAATT+GGG - chr1.1:72106094-72106113 MS.gene006265:CDS 15.0%
!!! TTATTTTGATGATTTGTATA+AGG - chr1.1:72102420-72102439 MS.gene006265:intron 15.0%
!!! TTTATCTGATTATTTTGAAT+TGG - chr1.1:72106093-72106112 MS.gene006265:CDS 15.0%
!!! TTTTAAATTACAGTTACAAA+GGG - chr1.1:72104387-72104406 MS.gene006265:intron 15.0%
!!! TTTTTAAATTACAGTTACAA+AGG - chr1.1:72104386-72104405 MS.gene006265:intron 15.0%
!! AAGTAAATTAAGGAATGATT+AGG - chr1.1:72102356-72102375 MS.gene006265:intron 20.0%
!! ACGAGTAAATAAATAATTAC+GGG + chr1.1:72105797-72105816 None:intergenic 20.0%
!! ATAAAACTACTATTCAACAA+AGG + chr1.1:72103014-72103033 None:intergenic 20.0%
!! ATAGTACTCAATATGTATTT+CGG - chr1.1:72105056-72105075 MS.gene006265:intron 20.0%
!! CAATGAAAACATAAAGTTTA+AGG + chr1.1:72101946-72101965 None:intergenic 20.0%
!! CTACATATATTCATACATAA+AGG + chr1.1:72103063-72103082 None:intergenic 20.0%
!! GAAATACACAAATTTGTATA+TGG - chr1.1:72102512-72102531 MS.gene006265:intron 20.0%
!! GAATCAAATGAATAAAAACT+CGG + chr1.1:72104235-72104254 None:intergenic 20.0%
!! GGCTATGAAAAATTATTATA+TGG - chr1.1:72103242-72103261 MS.gene006265:intron 20.0%
!! GTTGTTATAAACGTTTATTA+AGG - chr1.1:72106373-72106392 MS.gene006265:CDS 20.0%
!! TAAAACTACTATTCAACAAA+GGG + chr1.1:72103013-72103032 None:intergenic 20.0%
!! TAAATAATTACGGGTATAAT+AGG + chr1.1:72105788-72105807 None:intergenic 20.0%
!! TCTAATAAAATGAAGAGAAA+AGG - chr1.1:72104295-72104314 MS.gene006265:intron 20.0%
!! TTGAACATTGTAAAGATAAA+GGG - chr1.1:72103848-72103867 MS.gene006265:intron 20.0%
!!! ATTTTACATGGAATATTTGA+AGG - chr1.1:72102001-72102020 MS.gene006265:intron 20.0%
!!! ATTTTATTTTCTTGGGAAAT+CGG - chr1.1:72105003-72105022 MS.gene006265:intron 20.0%
!!! ATTTTGTTTTTAAATGGAAG+AGG - chr1.1:72104930-72104949 MS.gene006265:CDS 20.0%
!!! CTTAAACTTTATGTTTTCAT+TGG - chr1.1:72101944-72101963 MS.gene006265:intron 20.0%
!!! TAGAAAACAAACACATTTTA+TGG + chr1.1:72106178-72106197 None:intergenic 20.0%
! AACATAGTGACATAATAACA+TGG - chr1.1:72102608-72102627 MS.gene006265:intron 25.0%
! ACAAAATTAATGACCAATCA+AGG - chr1.1:72104851-72104870 MS.gene006265:CDS 25.0%
! ACCTATGATTTATAAATGTG+AGG - chr1.1:72106330-72106349 MS.gene006265:CDS 25.0%
! ACTACAGCATAAAAAAACAT+AGG + chr1.1:72105927-72105946 None:intergenic 25.0%
! AGTAATAATGTATGAATGAG+TGG + chr1.1:72106064-72106083 None:intergenic 25.0%
! ATTACAAATCCAAAATCTTC+AGG + chr1.1:72101830-72101849 None:intergenic 25.0%
! CCATGTAAAATATATGCTAT+AGG + chr1.1:72101992-72102011 None:intergenic 25.0%
! CCTATGATTTATAAATGTGA+GGG - chr1.1:72106331-72106350 MS.gene006265:CDS 25.0%
! GAATTCATCTTAGAGTTTAA+TGG + chr1.1:72104491-72104510 None:intergenic 25.0%
! GTAAAATGATGGTATTTCAT+TGG + chr1.1:72104361-72104380 None:intergenic 25.0%
! GTTGAACATTGTAAAGATAA+AGG - chr1.1:72103847-72103866 MS.gene006265:intron 25.0%
! TATTTGAATGATGACATCAT+TGG - chr1.1:72102641-72102660 MS.gene006265:intron 25.0%
! TCATTCATCTACATTACTAT+AGG - chr1.1:72105750-72105769 MS.gene006265:intron 25.0%
! TCATTCCTTAATTTACTTTC+TGG + chr1.1:72102354-72102373 None:intergenic 25.0%
! TCTAATCTGTGTTTCTTTAT+TGG + chr1.1:72106401-72106420 None:intergenic 25.0%
! TCTTATAAAAGGATTTATGC+TGG - chr1.1:72102226-72102245 MS.gene006265:intron 25.0%
! TTACAAATCCAAAATCTTCA+GGG + chr1.1:72101829-72101848 None:intergenic 25.0%
! TTCCTGTTCTTTATAATTCA+AGG - chr1.1:72102137-72102156 MS.gene006265:intron 25.0%
! TTTCAGCATGAATTTGATTA+AGG - chr1.1:72106625-72106644 MS.gene006265:CDS 25.0%
!! AAAATAGGTTGTTCTTTTGA+AGG + chr1.1:72101905-72101924 None:intergenic 25.0%
!! AAATAGGTTGTTCTTTTGAA+GGG + chr1.1:72101904-72101923 None:intergenic 25.0%
!! AATATGCATACGTTTTACAT+TGG - chr1.1:72102542-72102561 MS.gene006265:intron 25.0%
!! ATATCATATTAGCAGGTTTT+TGG + chr1.1:72105126-72105145 None:intergenic 25.0%
!! CCTATAGCATATATTTTACA+TGG - chr1.1:72101989-72102008 MS.gene006265:CDS 25.0%
!! GGTCATTAATTTTGTCAAAA+CGG + chr1.1:72104846-72104865 None:intergenic 25.0%
!! TCAATTTCTTGTTCTTCTTT+TGG + chr1.1:72101662-72101681 None:intergenic 25.0%
!! TTATGTTTGATTTATGCAAC+AGG - chr1.1:72106242-72106261 MS.gene006265:CDS 25.0%
!! TTGGTATCAAAACTTTTATC+TGG + chr1.1:72105107-72105126 None:intergenic 25.0%
!! TTTGTTGTAACTGTATTACA+AGG + chr1.1:72105342-72105361 None:intergenic 25.0%
!! TTTTTAACGATCTTTGTAGT+TGG - chr1.1:72103121-72103140 MS.gene006265:intron 25.0%
!!! AATCGTTTTAACTGTAAACA+TGG + chr1.1:72105262-72105281 None:intergenic 25.0%
!!! GAAACATTACGAGTTTTAAT+TGG - chr1.1:72104420-72104439 MS.gene006265:intron 25.0%
!!! GTATTTTTCAGACAATAATG+TGG - chr1.1:72106550-72106569 MS.gene006265:CDS 25.0%
!!! TAATACGCTTTAAAAACTCT+AGG + chr1.1:72102325-72102344 None:intergenic 25.0%
!!! TACGAGTTTTAATTGGAATT+TGG - chr1.1:72104427-72104446 MS.gene006265:intron 25.0%
!!! TTGTTTTGTTGAGTGAAAAT+AGG + chr1.1:72101920-72101939 None:intergenic 25.0%
!!! TTTGTTTTTGTGTGTAAAAC+TGG - chr1.1:72105446-72105465 MS.gene006265:intron 25.0%
!!! TTTTGGTGCTTTAATTTGTT+TGG - chr1.1:72102277-72102296 MS.gene006265:intron 25.0%
AAAAATTAAGAGCGGACATA+TGG - chr1.1:72105301-72105320 MS.gene006265:intron 30.0%
AAACCAATATGTAATTGTGC+AGG - chr1.1:72104697-72104716 MS.gene006265:intron 30.0%
ACTTTCTCCTATCTAAATGT+AGG - chr1.1:72106469-72106488 MS.gene006265:CDS 30.0%
AGCATAGTGGTTCTTATAAA+AGG - chr1.1:72102215-72102234 MS.gene006265:intron 30.0%
ATACAAAATAACAGCACATC+TGG + chr1.1:72104912-72104931 None:intergenic 30.0%
ATATTTGAAGGTGATAAGGA+AGG - chr1.1:72102013-72102032 MS.gene006265:intron 30.0%
ATTATATGGATATGATGGCA+TGG - chr1.1:72103256-72103275 MS.gene006265:intron 30.0%
CAATCAAGGTAATAACCAAT+AGG - chr1.1:72104865-72104884 MS.gene006265:CDS 30.0%
CATGATCAAGAAAGATAAAC+TGG + chr1.1:72104034-72104053 None:intergenic 30.0%
CCCTCACATTTATAAATCAT+AGG + chr1.1:72106334-72106353 None:intergenic 30.0%
CTAATATGATATCGATCACA+TGG - chr1.1:72105134-72105153 MS.gene006265:intron 30.0%
CTCCTTGAATTATAAAGAAC+AGG + chr1.1:72102142-72102161 None:intergenic 30.0%
CTGTTCTTTATAATTCAAGG+AGG - chr1.1:72102140-72102159 MS.gene006265:intron 30.0%
CTTGATCATTTAGATCAGAA+AGG + chr1.1:72104545-72104564 None:intergenic 30.0%
CTTTCTCCTATCTAAATGTA+GGG - chr1.1:72106470-72106489 MS.gene006265:CDS 30.0%
GAACATCTTGATGTAAGAAA+AGG - chr1.1:72103505-72103524 MS.gene006265:CDS 30.0%
GATCTAAATGATCAAGAACT+CGG - chr1.1:72104549-72104568 MS.gene006265:intron 30.0%
GATTATGGCTGTTAGAAATA+TGG - chr1.1:72103346-72103365 MS.gene006265:intron 30.0%
GTACAACAAGAAAATCATTC+AGG - chr1.1:72106002-72106021 MS.gene006265:CDS 30.0%
GTTGTACATTATAGATGAGT+TGG + chr1.1:72105989-72106008 None:intergenic 30.0%
TAAAACTCGTAATGTTTCCA+TGG + chr1.1:72104418-72104437 None:intergenic 30.0%
TAGTAAATTACCTTCATCCA+TGG + chr1.1:72105838-72105857 None:intergenic 30.0%
TATCAAAGCAGCAATACTTA+AGG - chr1.1:72103382-72103401 MS.gene006265:intron 30.0%
TCAAGCCAGAAAGTAAATTA+AGG - chr1.1:72102346-72102365 MS.gene006265:intron 30.0%
TCTTACATCAAGATGTTCAA+CGG + chr1.1:72103503-72103522 None:intergenic 30.0%
TGGAATATTTGAAGGTGATA+AGG - chr1.1:72102009-72102028 MS.gene006265:intron 30.0%
TTACATCAAATTCTTGCAAC+TGG - chr1.1:72103221-72103240 MS.gene006265:intron 30.0%
TTATGCAACAGGTATAATAC+AGG - chr1.1:72106253-72106272 MS.gene006265:CDS 30.0%
TTCTTGATCATGTTCATTCA+AGG - chr1.1:72104042-72104061 MS.gene006265:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG - chr1.1:72106471-72106490 MS.gene006265:CDS 30.0%
TTTGAACATAGGTTACCTAT+TGG + chr1.1:72104883-72104902 None:intergenic 30.0%
! AAAACTCTAGGAAGATAAAC+AGG + chr1.1:72102313-72102332 None:intergenic 30.0%
! ATTGACTTTGTGAATTGTGA+CGG - chr1.1:72102798-72102817 MS.gene006265:intron 30.0%
! ATTTAGAATGCCATGTCATA+GGG + chr1.1:72105663-72105682 None:intergenic 30.0%
! CAGTTTTGCCTAAATAAAGA+TGG + chr1.1:72103551-72103570 None:intergenic 30.0%
! CTATTGGTTATTACCTTGAT+TGG + chr1.1:72104867-72104886 None:intergenic 30.0%
! CTTTTCATCATTTAGACTTG+AGG - chr1.1:72103083-72103102 MS.gene006265:intron 30.0%
! GATTTTTCATTACCATCATG+TGG - chr1.1:72102830-72102849 MS.gene006265:intron 30.0%
! GTTTTATGTTGCAGAGTTAT+GGG - chr1.1:72103027-72103046 MS.gene006265:intron 30.0%
! TACACCACATGTTTTTCTTT+TGG - chr1.1:72102048-72102067 MS.gene006265:intron 30.0%
! TATTTAGAATGCCATGTCAT+AGG + chr1.1:72105664-72105683 None:intergenic 30.0%
! TCTAAGATGAATTCCTATGT+GGG - chr1.1:72104497-72104516 MS.gene006265:intron 30.0%
! TCTCTTGACAAATCTTTTGT+TGG - chr1.1:72104726-72104745 MS.gene006265:intron 30.0%
! TGAATAAAAACTCGGTTTGT+TGG + chr1.1:72104227-72104246 None:intergenic 30.0%
! TGATTTGGCTAAGAAACTTT+GGG - chr1.1:72106601-72106620 MS.gene006265:CDS 30.0%
! TTTCTTGTTCTTCTTTTGGT+AGG + chr1.1:72101658-72101677 None:intergenic 30.0%
! TTTTATGTTGCAGAGTTATG+GGG - chr1.1:72103028-72103047 MS.gene006265:intron 30.0%
!! AGTTTTATGTTGCAGAGTTA+TGG - chr1.1:72103026-72103045 MS.gene006265:intron 30.0%
!! GGGCAATATGTTTGATTTTA+CGG - chr1.1:72104200-72104219 MS.gene006265:intron 30.0%
!! TTTGGCTAGTCAAGTTTTTA+TGG - chr1.1:72102066-72102085 MS.gene006265:intron 30.0%
!!! AGGAAACTAGTTTTTCTTTG+TGG + chr1.1:72101743-72101762 None:intergenic 30.0%
!!! TCTGATTATTTTGAATTGGG+TGG - chr1.1:72106097-72106116 MS.gene006265:CDS 30.0%
!!! TGTTTTTTTATGCTGTAGTG+TGG - chr1.1:72105928-72105947 MS.gene006265:intron 30.0%
AAAGTCAATAGTGCAGATCA+TGG + chr1.1:72102787-72102806 None:intergenic 35.0%
ACACATATCAGGGAAAGAAA+TGG - chr1.1:72104654-72104673 MS.gene006265:intron 35.0%
ACAGGAACAAAAGCTCTTAT+TGG + chr1.1:72102124-72102143 None:intergenic 35.0%
ACAGGTATAATACAGGTGAT+TGG - chr1.1:72106260-72106279 MS.gene006265:CDS 35.0%
AGGAATGATTAGGTAGCTAT+AGG - chr1.1:72102366-72102385 MS.gene006265:intron 35.0%
ATCATTAAAGCCCTATGACA+TGG - chr1.1:72105650-72105669 MS.gene006265:intron 35.0%
ATTGTGAATTCTCTTCATCC+AGG - chr1.1:72105535-72105554 MS.gene006265:intron 35.0%
CAGCATGAATTTGATTAAGG+AGG - chr1.1:72106628-72106647 MS.gene006265:CDS 35.0%
CAGGTATAATACAGGTGATT+GGG - chr1.1:72106261-72106280 MS.gene006265:CDS 35.0%
CATTGTAAAATCCACGATAG+TGG + chr1.1:72105720-72105739 None:intergenic 35.0%
CCAGAAAACATTACTACTAC+TGG + chr1.1:72104072-72104091 None:intergenic 35.0%
CGTGAATTAAGAAACGTAGT+TGG + chr1.1:72105894-72105913 None:intergenic 35.0%
CTAGCCAAAAGAAAAACATG+TGG + chr1.1:72102055-72102074 None:intergenic 35.0%
CTGTAGTTCAATGTTGTCTT+TGG + chr1.1:72104155-72104174 None:intergenic 35.0%
GCTGCATGAAAAATTAAGAG+CGG - chr1.1:72105293-72105312 MS.gene006265:intron 35.0%
GGAAGAATTGTTAATGTCTC+TGG - chr1.1:72104787-72104806 MS.gene006265:CDS 35.0%
GGCTTACACATTTGCATATT+CGG - chr1.1:72104813-72104832 MS.gene006265:CDS 35.0%
GGGTCGTGTCAAATAAATAT+TGG - chr1.1:72106351-72106370 MS.gene006265:CDS 35.0%
GTAATTGCAAGAAACAATGC+AGG - chr1.1:72104103-72104122 MS.gene006265:CDS 35.0%
GTGATCGATATCATATTAGC+AGG + chr1.1:72105133-72105152 None:intergenic 35.0%
GTTTAGAGATGAGATTTCCA+AGG - chr1.1:72102183-72102202 MS.gene006265:intron 35.0%
TAATTCTCTTTCTCAGACCA+TGG - chr1.1:72105818-72105837 MS.gene006265:intron 35.0%
TACAACAAACAGAGTGCATA+TGG - chr1.1:72105353-72105372 MS.gene006265:CDS 35.0%
TACACATTTGCATATTCGGA+AGG - chr1.1:72104817-72104836 MS.gene006265:CDS 35.0%
TATGTTGAAGATGAGATGTG+TGG + chr1.1:72102594-72102613 None:intergenic 35.0%
TGACCTGCACAATTACATAT+TGG + chr1.1:72104703-72104722 None:intergenic 35.0%
TGTGATGAAAAATGTTCAGC+AGG - chr1.1:72106289-72106308 MS.gene006265:CDS 35.0%
TTAAAACGATTGTCTCACCA+TGG - chr1.1:72105271-72105290 MS.gene006265:intron 35.0%
TTCTAACAGCCATAATCACA+TGG + chr1.1:72103343-72103362 None:intergenic 35.0%
TTCTCCTATCTAAATGTAGG+GGG - chr1.1:72106472-72106491 MS.gene006265:CDS 35.0%
! AAGGAGGATTTTCACTATTG+TGG - chr1.1:72102156-72102175 MS.gene006265:intron 35.0%
! AATTGTTAATGTCTCTGGAG+AGG - chr1.1:72104792-72104811 MS.gene006265:CDS 35.0%
! CAGCTAAACAATTGAGTTGT+CGG + chr1.1:72101772-72101791 None:intergenic 35.0%
! CCAGTAGTAGTAATGTTTTC+TGG - chr1.1:72104069-72104088 MS.gene006265:intron 35.0%
! CTTAATTTTTCATGCAGCCA+TGG + chr1.1:72105291-72105310 None:intergenic 35.0%
! GCTAGTCAAGTTTTTATGGA+AGG - chr1.1:72102070-72102089 MS.gene006265:intron 35.0%
! GGATTTTCACTATTGTGGAT+TGG - chr1.1:72102161-72102180 MS.gene006265:intron 35.0%
! GTTTTCATTGGAGCAATCAT+TGG - chr1.1:72101956-72101975 MS.gene006265:intron 35.0%
! TAAATTAAGTTAACGGACCC+AGG - chr1.1:72103915-72103934 MS.gene006265:intron 35.0%
! TCACTTGTTACATCTTGATC+AGG - chr1.1:72105495-72105514 MS.gene006265:intron 35.0%
! TCGCAGTACCATCTTTATTT+AGG - chr1.1:72103540-72103559 MS.gene006265:intron 35.0%
! TCTGGTGATGATTTGAACAT+AGG + chr1.1:72104894-72104913 None:intergenic 35.0%
! TTTGAATTGGGTGGTTTTTC+TGG - chr1.1:72106106-72106125 MS.gene006265:CDS 35.0%
!! CTCTAAGATGAATTCCTATG+TGG - chr1.1:72104496-72104515 MS.gene006265:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG - chr1.1:72106600-72106619 MS.gene006265:CDS 35.0%
!! TGGTTTGTTTGTTTGCACAT+TGG - chr1.1:72106126-72106145 MS.gene006265:CDS 35.0%
!!! ACTAGTTTTTCTTTGTGGTG+TGG + chr1.1:72101738-72101757 None:intergenic 35.0%
!!! ATGACGTCAATTTTAGCTGA+GGG + chr1.1:72103413-72103432 None:intergenic 35.0%
!!! GAAGGTGTTGCATTTTCAAA+TGG - chr1.1:72102088-72102107 MS.gene006265:intron 35.0%
AACTGGAACACAGATACTCA+TGG + chr1.1:72104017-72104036 None:intergenic 40.0%
AAGACCAGAGGAGTTGAATT+CGG + chr1.1:72103480-72103499 None:intergenic 40.0%
AATAACCAGCAGAGAAGTCA+TGG + chr1.1:72102453-72102472 None:intergenic 40.0%
ACACACACACACACATATCA+GGG - chr1.1:72104644-72104663 MS.gene006265:intron 40.0%
ACTCATGGAATTGATGCAAC+TGG - chr1.1:72102910-72102929 MS.gene006265:intron 40.0%
ACTGCTGAACAAGTTACTCA+TGG - chr1.1:72102895-72102914 MS.gene006265:CDS 40.0%
AGAGAAACTAGCATACCTTG+AGG + chr1.1:72105427-72105446 None:intergenic 40.0%
AGAGATGAGATTTCCAAGGT+TGG - chr1.1:72102187-72102206 MS.gene006265:intron 40.0%
AGATTGGTGAGAATGATTCC+TGG + chr1.1:72105556-72105575 None:intergenic 40.0%
ATAACAACGGTAGGTAATGC+AGG + chr1.1:72105694-72105713 None:intergenic 40.0%
ATATTGCCCACATACCTAAG+TGG + chr1.1:72104189-72104208 None:intergenic 40.0%
CAAAAGAGAATCACAGGGAA+GGG - chr1.1:72106574-72106593 MS.gene006265:CDS 40.0%
CACAAACCACTTAGGTATGT+GGG - chr1.1:72104180-72104199 MS.gene006265:intron 40.0%
CACTAATTCCCTTCACTTGT+GGG + chr1.1:72106526-72106545 None:intergenic 40.0%
CATTGGAATGCGTTCTTATC+AGG - chr1.1:72102559-72102578 MS.gene006265:intron 40.0%
CTACTATTCAACAAAGGGCA+TGG + chr1.1:72103008-72103027 None:intergenic 40.0%
CTCAGCTAAAATTGACGTCA+TGG - chr1.1:72103412-72103431 MS.gene006265:CDS 40.0%
CTCATTTCAACGAGTACTAC+AGG + chr1.1:72105220-72105239 None:intergenic 40.0%
CTGCTGAAATTTGCATAGTC+AGG - chr1.1:72103171-72103190 MS.gene006265:intron 40.0%
CTGTAGTACTCGTTGAAATG+AGG - chr1.1:72105218-72105237 MS.gene006265:intron 40.0%
GAAATCCCTTTCTTCCTGAA+TGG + chr1.1:72102856-72102875 None:intergenic 40.0%
GAATGAGTGGTGAAAGTTAG+TGG + chr1.1:72106051-72106070 None:intergenic 40.0%
GATAAAGGGCTAACTTGACA+CGG - chr1.1:72103862-72103881 MS.gene006265:intron 40.0%
GCACACGAAAGTAAGAAAGA+AGG - chr1.1:72104766-72104785 MS.gene006265:CDS 40.0%
GGAGTTAGATCTCAGTTCAA+TGG - chr1.1:72103433-72103452 MS.gene006265:CDS 40.0%
TACATCTTGATCAGGCTGAT+GGG - chr1.1:72105503-72105522 MS.gene006265:intron 40.0%
TGTAAGAAAAGGAACCGACA+TGG - chr1.1:72103516-72103535 MS.gene006265:CDS 40.0%
TGTCTTTGGACAGCATGAAA+GGG + chr1.1:72104141-72104160 None:intergenic 40.0%
TTACATCTTGATCAGGCTGA+TGG - chr1.1:72105502-72105521 MS.gene006265:intron 40.0%
TTCAGGAAGAAAGGGATTTC+TGG - chr1.1:72102856-72102875 MS.gene006265:CDS 40.0%
TTGTCTTTGGACAGCATGAA+AGG + chr1.1:72104142-72104161 None:intergenic 40.0%
! AAAGGGATTTCTGGATTCTC+AGG - chr1.1:72102865-72102884 MS.gene006265:CDS 40.0%
! AAGGGATTTCTGGATTCTCA+GGG - chr1.1:72102866-72102885 MS.gene006265:CDS 40.0%
! AATTGAGTTGTCGGAATGAG+AGG + chr1.1:72101763-72101782 None:intergenic 40.0%
! ACGATAGTGGCACATAACAA+CGG + chr1.1:72105707-72105726 None:intergenic 40.0%
! CAAAAACCTGCTGATAACGA+TGG - chr1.1:72105184-72105203 MS.gene006265:intron 40.0%
! CATCGTTATCAGCAGGTTTT+TGG + chr1.1:72105186-72105205 None:intergenic 40.0%
! CTGTGGCTAATATGGCTTTT+TGG - chr1.1:72102260-72102279 MS.gene006265:intron 40.0%
! TGGGAAATCGGCTTTACTAT+TGG - chr1.1:72105015-72105034 MS.gene006265:intron 40.0%
!! ATGGTTAGCCCTGAAGATTT+TGG - chr1.1:72101818-72101837 MS.gene006265:intron 40.0%
!! TGTTCTTTTGAAGGGTGAGA+TGG + chr1.1:72101896-72101915 None:intergenic 40.0%
!!! CATGACGTCAATTTTAGCTG+AGG + chr1.1:72103414-72103433 None:intergenic 40.0%
ACATCTTGATCAGGCTGATG+GGG - chr1.1:72105504-72105523 MS.gene006265:intron 45.0%
ACCAATCTTTCCCGCCATAT+GGG - chr1.1:72105568-72105587 MS.gene006265:intron 45.0%
ACTATGCTCTTCACCAACCT+TGG + chr1.1:72102203-72102222 None:intergenic 45.0%
AGAGAAAAGGAGACATGCAC+TGG - chr1.1:72104308-72104327 MS.gene006265:intron 45.0%
AGTCTCAACTCCAATACCAC+TGG + chr1.1:72103294-72103313 None:intergenic 45.0%
ATGTGGCCATTCAGGAAGAA+AGG - chr1.1:72102847-72102866 MS.gene006265:CDS 45.0%
CAATGCTACATAGCAGGTTG+TGG + chr1.1:72106501-72106520 None:intergenic 45.0%
CACACACACACACACATATC+AGG - chr1.1:72104643-72104662 MS.gene006265:intron 45.0%
CAGTTTGCCACAAACCACTT+AGG - chr1.1:72104172-72104191 MS.gene006265:intron 45.0%
CCAAAAGAGAATCACAGGGA+AGG - chr1.1:72106573-72106592 MS.gene006265:CDS 45.0%
CCACAAACCACTTAGGTATG+TGG - chr1.1:72104179-72104198 MS.gene006265:intron 45.0%
CCACAAGTGAAGGGAATTAG+TGG - chr1.1:72106524-72106543 MS.gene006265:CDS 45.0%
CCACATACCTAAGTGGTTTG+TGG + chr1.1:72104182-72104201 None:intergenic 45.0%
CCACTAATTCCCTTCACTTG+TGG + chr1.1:72106527-72106546 None:intergenic 45.0%
CTTTCTCAGACCATGGATGA+AGG - chr1.1:72105825-72105844 MS.gene006265:intron 45.0%
GGATATGATGGCATGGTAAC+AGG - chr1.1:72103263-72103282 MS.gene006265:intron 45.0%
GGTCTCACTTCTATTGTCAC+TGG - chr1.1:72102931-72102950 MS.gene006265:intron 45.0%
GTGGCCAAAAGAGAATCACA+GGG - chr1.1:72106569-72106588 MS.gene006265:CDS 45.0%
GTGTGTGTGTGTAGTGAAGT+AGG + chr1.1:72104618-72104637 None:intergenic 45.0%
GTTGTTGTCTTATCAGCCAG+TGG - chr1.1:72101794-72101813 MS.gene006265:intron 45.0%
TAGACCCTCGAACAACAATG+AGG + chr1.1:72103739-72103758 None:intergenic 45.0%
TAGTGGCACATAACAACGGT+AGG + chr1.1:72105703-72105722 None:intergenic 45.0%
TGTGGCCAAAAGAGAATCAC+AGG - chr1.1:72106568-72106587 MS.gene006265:CDS 45.0%
TGTGGCCATTCAGGAAGAAA+GGG - chr1.1:72102848-72102867 MS.gene006265:CDS 45.0%
TTACCATCATGTGGCCATTC+AGG - chr1.1:72102839-72102858 MS.gene006265:intron 45.0%
TTGAACCATGACTTCTCTGC+TGG - chr1.1:72102445-72102464 MS.gene006265:intron 45.0%
! CCTTCCCTGTGATTCTCTTT+TGG + chr1.1:72106576-72106595 None:intergenic 45.0%
! GTGAAAGTTAGTGGACAGAC+TGG + chr1.1:72106042-72106061 None:intergenic 45.0%
! GTGACCTCATTGTTGTTCGA+GGG - chr1.1:72103732-72103751 MS.gene006265:intron 45.0%
! GTTGTTATGTGCCACTATCG+TGG - chr1.1:72105706-72105725 MS.gene006265:intron 45.0%
! TACCGTGGATTACACCCATA+TGG + chr1.1:72105585-72105604 None:intergenic 45.0%
! TGTGACCTCATTGTTGTTCG+AGG - chr1.1:72103731-72103750 MS.gene006265:intron 45.0%
! TTTCGGTTTTCTGCGAGTCT+TGG - chr1.1:72105073-72105092 MS.gene006265:intron 45.0%
!! AAGGTTGGTGAAGAGCATAG+TGG - chr1.1:72102202-72102221 MS.gene006265:intron 45.0%
!! AGCACTTGCTGTGGCTAATA+TGG - chr1.1:72102252-72102271 MS.gene006265:intron 45.0%
!! AGTTACAAAGGGTGCTTCCA+TGG - chr1.1:72104398-72104417 MS.gene006265:intron 45.0%
!! AAATGAAAAAAATAAAAAAA+TGG + chr1.1:72102980-72102999 None:intergenic 5.0%
ACAGGAGCAACCAGTGGTAT+TGG - chr1.1:72103281-72103300 MS.gene006265:intron 50.0%
ACGACTCCATCGTTATCAGC+AGG + chr1.1:72105193-72105212 None:intergenic 50.0%
AGCATTGCACCCACAAGTGA+AGG - chr1.1:72106514-72106533 MS.gene006265:CDS 50.0%
AGGCTAATGTCACAGCCAGT+TGG + chr1.1:72101638-72101657 None:intergenic 50.0%
ATAAAAGGCGAATCCGCACC+TGG + chr1.1:72103936-72103955 None:intergenic 50.0%
ATGGTAACAGGAGCAACCAG+TGG - chr1.1:72103275-72103294 MS.gene006265:intron 50.0%
CACCAATCTTTCCCGCCATA+TGG - chr1.1:72105567-72105586 MS.gene006265:intron 50.0%
CATCACAGTTGCTCCCACAT+AGG + chr1.1:72104513-72104532 None:intergenic 50.0%
CGCCATATGGGTGTAATCCA+CGG - chr1.1:72105580-72105599 MS.gene006265:intron 50.0%
CTTCCTGAATGGCCACATGA+TGG + chr1.1:72102845-72102864 None:intergenic 50.0%
GATGGTACTGCGATCCATGT+CGG + chr1.1:72103533-72103552 None:intergenic 50.0%
GATGTTCAACGGAAGACCAG+AGG + chr1.1:72103492-72103511 None:intergenic 50.0%
GCATCCGAATTCAACTCCTC+TGG - chr1.1:72103473-72103492 MS.gene006265:CDS 50.0%
GCATTGCACCCACAAGTGAA+GGG - chr1.1:72106515-72106534 MS.gene006265:CDS 50.0%
GCGTGGTGTCCATGTGATTA+TGG - chr1.1:72103331-72103350 MS.gene006265:intron 50.0%
GCTGCCCCCTACATTTAGAT+AGG + chr1.1:72106479-72106498 None:intergenic 50.0%
TAAAAGGCGAATCCGCACCT+GGG + chr1.1:72103935-72103954 None:intergenic 50.0%
TGGGTGCAATGCTACATAGC+AGG + chr1.1:72106507-72106526 None:intergenic 50.0%
TGTCTTATCAGCCAGTGGCA+TGG - chr1.1:72101799-72101818 MS.gene006265:intron 50.0%
! ACCCATATGGCGGGAAAGAT+TGG + chr1.1:72105572-72105591 None:intergenic 50.0%
! CGTGGATTACACCCATATGG+CGG + chr1.1:72105582-72105601 None:intergenic 50.0%
! GTGGATTACACCCATATGGC+GGG + chr1.1:72105581-72105600 None:intergenic 50.0%
! TAAGTTAACGGACCCAGGTG+CGG - chr1.1:72103920-72103939 MS.gene006265:intron 50.0%
ACGCGTGTTCTTGCTTTGCG+TGG - chr1.1:72103314-72103333 MS.gene006265:intron 55.0%
TCTGGTGGAGTTGGACCAAC+TGG - chr1.1:72101620-72101639 MS.gene006265:CDS 55.0%
TCTTGATCAGGCTGATGGGG+TGG - chr1.1:72105507-72105526 MS.gene006265:intron 55.0%
TGAGCTTGCAAGACGCCTCA+AGG - chr1.1:72105409-72105428 MS.gene006265:intron 55.0%
TTCAGGGCTAACCATGCCAC+TGG + chr1.1:72101813-72101832 None:intergenic 55.0%
! ACAGGGAAGGGACGCTGATT+TGG - chr1.1:72106586-72106605 MS.gene006265:CDS 55.0%
! GAGGCGTCTTGCAAGCTCAT+TGG + chr1.1:72105408-72105427 None:intergenic 55.0%
!! TGCTGGAAGAGCACTTGCTG+TGG - chr1.1:72102243-72102262 MS.gene006265:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72101617 72106655 72101617 ID=MS.gene006265
chr1.1 mRNA 72101617 72106655 72101617 ID=MS.gene006265.t1;Parent=MS.gene006265
chr1.1 exon 72105991 72106655 72105991 ID=MS.gene006265.t1.exon1;Parent=MS.gene006265.t1
chr1.1 CDS 72105991 72106655 72105991 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72105320 72105411 72105320 ID=MS.gene006265.t1.exon2;Parent=MS.gene006265.t1
chr1.1 CDS 72105320 72105411 72105320 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72104756 72104987 72104756 ID=MS.gene006265.t1.exon3;Parent=MS.gene006265.t1
chr1.1 CDS 72104756 72104987 72104756 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72104079 72104158 72104079 ID=MS.gene006265.t1.exon4;Parent=MS.gene006265.t1
chr1.1 CDS 72104079 72104158 72104079 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72103400 72103553 72103400 ID=MS.gene006265.t1.exon5;Parent=MS.gene006265.t1
chr1.1 CDS 72103400 72103553 72103400 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72102842 72102920 72102842 ID=MS.gene006265.t1.exon6;Parent=MS.gene006265.t1
chr1.1 CDS 72102842 72102920 72102842 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72102671 72102755 72102671 ID=MS.gene006265.t1.exon7;Parent=MS.gene006265.t1
chr1.1 CDS 72102671 72102755 72102671 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72101962 72102008 72101962 ID=MS.gene006265.t1.exon8;Parent=MS.gene006265.t1
chr1.1 CDS 72101962 72102008 72101962 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
chr1.1 exon 72101617 72101781 72101617 ID=MS.gene006265.t1.exon9;Parent=MS.gene006265.t1
chr1.1 CDS 72101617 72101781 72101617 ID=cds.MS.gene006265.t1;Parent=MS.gene006265.t1
Gene Sequence

>MS.gene006265

ATGTCTGGTGGAGTTGGACCAACTGGCTGTGACATTAGCCTACCAAAAGAAGAACAAGAAATTGAACACAAAGAACAACAAGACAAATCACTCAAGAATAATCTCAACGAATCAACAACCACACCACAAAGAAAAACTAGTTTCCTCTCATTCCGACAACTCAATTGTTTAGCTGTTGTTGTTGTCTTATCAGCCAGTGGCATGGTTAGCCCTGAAGATTTTGGATTTGTAATCTTCTCAGTATTCTACATGTACTTCATATCAAAAGTTGCTTTTCCATCTCACCCTTCAAAAGAACAACCTATTTTCACTCAACAAAACAAGATCCTTAAACTTTATGTTTTCATTGGAGCAATCATTGGATTATATGCTCCTATAGCATATATTTTACATGGAATATTTGAAGGTGATAAGGAAGGTATTAAAACAGCTACACCACATGTTTTTCTTTTGGCTAGTCAAGTTTTTATGGAAGGTGTTGCATTTTCAAATGGATTTTCTTCTCCAATAAGAGCTTTTGTTCCTGTTCTTTATAATTCAAGGAGGATTTTCACTATTGTGGATTGGTTTAGAGATGAGATTTCCAAGGTTGGTGAAGAGCATAGTGGTTCTTATAAAAGGATTTATGCTGGAAGAGCACTTGCTGTGGCTAATATGGCTTTTTGGTGCTTTAATTTGTTTGGATTTTTAATACCTGTTTATCTTCCTAGAGTTTTTAAAGCGTATTATTCAAGCCAGAAAGTAAATTAAGGAATGATTAGGTAGCTATAGGATGTTGTTTATGTATGATTTGATAGAGTATTTTATTTTGATGATTTGTATAAGGTCTTGAACCATGACTTCTCTGCTGGTTATTTTATGATATTTGCATAGTAATTAAATAAATTTGACAGGGGAAATACACAAATTTGTATATGGTATATGTAATATGCATACGTTTTACATTGGAATGCGTTCTTATCAGGACTTTAACTCCACACATCTCATCTTCAACATAGTGACATAATAACATGGACTGCGTTTTTATTTGAATGATGACATCATTGGCACTAAATAATATTAAAAAGAACTATTCAAAATCAAACCCACCTAAATCATATATAAAATTGATTCTATAAATAATATTCAAGTCTATAAGAATAGTATAAAGTATTGTGTTGAATTTAACCATGATCTGCACTATTGACTTTGTGAATTGTGACGGAGAAAGAGAGATTTTTCATTACCATCATGTGGCCATTCAGGAAGAAAGGGATTTCTGGATTCTCAGGGAGTTCAACTGCTGAACAAGTTACTCATGGAATTGATGCAACTGGTCTCACTTCTATTGTCACTGGTCTATCTCTATTACTCTTTCTTACCATTTTTTTATTTTTTTCATTTTTCAACCATGCCCTTTGTTGAATAGTAGTTTTATGTTGCAGAGTTATGGGGAATTATTAACCTTTATGTATGAATATATGTAGCTTTTCATCATTTAGACTTGAGGAGTGATTAACAAACTTTTTTAACGATCTTTGTAGTTGGCTCCATAATTTAACTTCAAGATTATTGCTGCTGAAATTTGCATAGTCAGGATTTATTTGTTTATATTCTGTGTAATTTTACATCAAATTCTTGCAACTGGCTATGAAAAATTATTATATGGATATGATGGCATGGTAACAGGAGCAACCAGTGGTATTGGAGTTGAGACTACGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATATGGTTGCTGCTAATGATATCAAAGCAGCAATACTTAAGGAGATTCCCTCAGCTAAAATTGACGTCATGGAGTTAGATCTCAGTTCAATGGAATCTGTCAAGAAATTTGCATCCGAATTCAACTCCTCTGGTCTTCCGTTGAACATCTTGATGTAAGAAAAGGAACCGACATGGATCGCAGTACCATCTTTATTTAGGCAAAACTGCACTAAGATTCCTCTAACTTAATTTAAAGTTTTACATGTCCATTTAAAAAGTAAATTGCATTTTCAATTCATCAAGATAACATCTAAATTACACCATAATAATTGTTATAATATCTAATTATCAAAATTAACATGATCATTTTTAGTTTTAGTCTAAGATTGTGACCTCATTGTTGTTCGAGGGTCTAATTTTGTTGTTGAGTAGTGAAAAATTCTTTATCATATATTTTTCAATGAGACAAATTTGTAACAGAAGTAAACTAAGAATGAAAGTTAGTTGAACATTGTAAAGATAAAGGGCTAACTTGACACGGAAAAAAAGATAAAAGACGTGTTTGAAACTTTAAATTAAGTTAACGGACCCAGGTGCGGATTCGCCTTTTATTTACTATTTATTTGACTCTTGATTTTTATTGAAGTTGTTAATTACTTGTTCTCTCTTACCATGAGTATCTGTGTTCCAGTTTATCTTTCTTGATCATGTTCATTCAAGGAAAACCAGTAGTAGTAATGTTTTCTGGTTTGTTTATTTGTAATTGCAAGAAACAATGCAGGAATCATGTCATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTACAGTTTGCCACAAACCACTTAGGTATGTGGGCAATATGTTTGATTTTACGGTCCAACAAACCGAGTTTTTATTCATTTGATTCTCATATTGACATCACTTAAAATTTACTGATATTTTATTTTTCTAATAAAATGAAGAGAAAAGGAGACATGCACTGGAAGTGTAAATTAGTTTTACACTGACGTCCAATGAAATACCATCATTTTACAATTATTTTTAAATTACAGTTACAAAGGGTGCTTCCATGGAAACATTACGAGTTTTAATTGGAATTTGGATGTCAGTGTAAAACTATTTAACACTAATAATGCATATCCATTAAACTCTAAGATGAATTCCTATGTGGGAGCAACTGTGATGAAATGTCTTCCTTTCTGATCTAAATGATCAAGAACTCGGTGATAGTAATTGATAGCTACTGTGATAATACAAACAAATGAGACCTACTTCACTACACACACACACACACACACACACACACACACATATCAGGGAAAGAAATGGTTATGAGTCTTTGAAACATGAAACCAATATGTAATTGTGCAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGACGAAAACAGCACACGAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCTCTGGAGAGGCTTACACATTTGCATATTCGGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGGTAATAACCAATAGGTAACCTATGTTCAAATCATCACCAGATGTGCTGTTATTTTGTATTTTGTTTTTAAATGGAAGAGGAAATTATTTGCGTGTGTGTGTGAGAGAGAGCAATTATAATAGAAACTTCAATTTTATTTTCTTGGGAAATCGGCTTTACTATTGGTTTGATTATAAGAAAGAAATAGTACTCAATATGTATTTCGGTTTTCTGCGAGTCTTGGAGAAGAAGCCAGATAAAAGTTTTGATACCAAAAACCTGCTAATATGATATCGATCACATGGATATAGTTTTAGTCTCGTAGACTATACCAAAAACCTGCTGATAACGATGGAGTCGTGATTCCTGTAGTACTCGTTGAAATGAGGTGTTATGCATATTTGATTCCATGTTTACAGTTAAAACGATTGTCTCACCATGGCTGCATGAAAAATTAAGAGCGGACATATGGTCAATATGTTTGCTTCCTTGTAATACAGTTACAACAAACAGAGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTTGCAAGACGCCTCAAGGTATGCTAGTTTCTCTTTGTTTTTGTGTGTAAAACTGGTTCTTTGTTTTGATATATTTATAACATCACTTGTTACATCTTGATCAGGCTGATGGGGTGGATATCATTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTAATCCACGGTAACTATTATCTTGTACTATTCATCTCAATTCATGATTTGTCTAGAAATCATTAAAGCCCTATGACATGGCATTCTAAATAATTTTTTCCTGCATTACCTACCGTTGTTATGTGCCACTATCGTGGATTTTACAATGAGACAAGTGATCATTCATCTACATTACTATAGGTGTTTTATATTTCCTATTATACCCGTAATTATTTATTTACTCGTATAATTCTCTTTCTCAGACCATGGATGAAGGTAATTTACTAAAGTAAGTCATAATATTTATAAAATCAACAAAACCAACTACGTTTCTTAATTCACGTGTCATTTTTCCTATGTTTTTTTATGCTGTAGTGTGGATGAGATGAAGTAATGTTTGCACTTGATTGCTATACCAACTCATCTATAATGTACAACAAGAAAATCATTCAGGAAGTTAAATGTGTGCCAGTCTGTCCACTAACTTTCACCACTCATTCATACATTATTACTTTATTTCTGTTTATCTGATTATTTTGAATTGGGTGGTTTTTCTGGTTTGTTTGTTTGCACATTGGCGCTCTGCAACATTAGCACTTAGTGTCCATAAAATGTGTTTGTTTTCTAATATGCACATAATGACAGTAGCTGAGTTTTATAGATATTGCTACTTATGTTTGATTTATGCAACAGGTATAATACAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGTATGTCATAATCAGTATGACCTATGATTTATAAATGTGAGGGTCGTGTCAAATAAATATTGGTTGTTATAAACGTTTATTAAGGGACCAATAAAGAAACACAGATTAGAAGATTTCTGATATTTCACTTTTTTTGCTTAGTAATCAGTTGCAAGTTAACTTTCTCCTATCTAAATGTAGGGGGCAGCCACAACCTGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGTGAGTATTTTTCAGACAATAATGTGGCCAAAAGAGAATCACAGGGAAGGGACGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATTAAGGAGGAATAG
Protein sequence

>MS.gene006265.t1

MSGGVGPTGCDISLPKEEQEIEHKEQQDKSLKNNLNESTTTPQRKTSFLSFRQLNCLAVVVVLSASGMVSPEDFGFVIFSVFYMYFISKVAFPSHPSKEQPIFTQQNKILKLYVFIGAIIGLYAPIAYILHGIFEGDKEGIKTATPHVFLLASQVFMEGVAFSNGFSSPIRAFVPVLYNSRRIFTIVDWFRDEISKVGEEHSGSYKRIYAGRALAVANMAFWKKGISGFSGSSTAEQVTHGIDATGLTSIVTGATSGIGVETTRVLALRGVHVIMAVRNMVAANDIKAAILKEIPSAKIDVMELDLSSMESVKKFASEFNSSGLPLNILINNAGIMSCPFMLSKDNIELQFATNHLGHFLLTNLLLDTMTKTAHESKKEGRIVNVSGEAYTFAYSEGIRFDKINDQSSYNKQSAYGQSKLANILHANELARRLKADGVDIIVNSLHPGIILTNLSRHMGVIHGIIQVIGKLVMKNVQQGAATTCYVALHPQVKGISGEYFSDNNVAKRESQGRDADLAKKLWDFSMNLIKEE