AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006264

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006264.t1 MTR_1g100335 94.921 315 16 0 1 315 1 315 0.0 615
MS.gene006264.t1 MTR_1g100395 92.698 315 23 0 1 315 1 315 0.0 601
MS.gene006264.t1 MTR_1g100315 84.762 315 48 0 1 315 1 315 0.0 550
MS.gene006264.t1 MTR_1g100305 80.317 315 62 0 1 315 1 315 0.0 532
MS.gene006264.t1 MTR_1g100335 96.748 246 8 0 1 246 1 246 2.12e-176 488
MS.gene006264.t1 MTR_1g100335 96.748 246 8 0 1 246 1 246 3.70e-176 488
MS.gene006264.t1 MTR_8g098415 70.096 311 93 0 1 311 1 311 6.59e-163 456
MS.gene006264.t1 MTR_8g098415 70.455 308 91 0 1 308 1 308 8.80e-162 453
MS.gene006264.t1 MTR_6g053550 72.403 308 80 3 10 313 18 324 3.32e-157 442
MS.gene006264.t1 MTR_8g098415 70.079 254 76 0 58 311 1 254 3.50e-131 374
MS.gene006264.t1 MTR_1g068970 59.344 305 124 0 8 312 13 317 3.76e-130 374
MS.gene006264.t1 MTR_7g099850 59.477 306 123 1 8 312 13 318 3.51e-128 369
MS.gene006264.t1 MTR_6g053600 70.229 262 75 2 10 268 4 265 2.69e-127 365
MS.gene006264.t1 MTR_8g098415 74.886 219 55 0 1 219 1 219 6.52e-117 336
MS.gene006264.t1 MTR_1g068970 57.258 248 106 0 65 312 3 250 5.59e-101 297
MS.gene006264.t1 MTR_3g077410 45.631 309 164 2 8 312 13 321 1.04e-88 268
MS.gene006264.t1 MTR_4g105310 45.307 309 165 2 8 312 24 332 2.22e-84 258
MS.gene006264.t1 MTR_8g099995 44.695 311 168 3 8 314 13 323 4.12e-83 254
MS.gene006264.t1 MTR_4g105310 46.914 243 125 2 8 246 24 266 8.36e-66 207
MS.gene006264.t1 MTR_6g081020 36.965 257 142 8 30 275 62 309 1.36e-31 122
MS.gene006264.t1 MTR_1g100345 64.865 74 26 0 33 106 4 77 2.64e-26 100
MS.gene006264.t1 MTR_2g079710 30.671 313 182 11 31 312 88 396 6.06e-25 103
MS.gene006264.t1 MTR_6g041980 29.520 271 171 7 25 291 62 316 1.62e-24 102
MS.gene006264.t1 MTR_3g091070 27.759 299 174 11 32 312 43 317 2.28e-18 84.3
MS.gene006264.t1 MTR_6g041980 28.042 189 129 2 25 213 62 243 1.22e-17 81.6
MS.gene006264.t1 MTR_6g453040 28.477 302 186 11 32 312 43 335 3.48e-17 81.3
MS.gene006264.t1 MTR_3g009190 28.808 302 185 11 32 312 65 357 4.67e-17 81.3
MS.gene006264.t1 MTR_3g009190 28.808 302 185 11 32 312 83 375 6.29e-17 80.9
MS.gene006264.t1 MTR_3g009190 28.571 301 185 11 33 312 65 356 7.21e-15 74.7
MS.gene006264.t1 MTR_4g087460 27.935 247 142 7 32 243 24 269 2.89e-13 69.7
MS.gene006264.t1 MTR_7g076660 25.256 293 155 9 32 283 9 278 1.65e-11 64.3
MS.gene006264.t1 MTR_8g022500 39.091 110 40 3 38 146 435 518 1.96e-11 65.1
MS.gene006264.t1 MTR_7g076660 25.256 293 155 9 32 283 10 279 1.97e-11 63.9
MS.gene006264.t1 MTR_7g076655 24.221 289 163 9 32 283 9 278 4.35e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006264.t1 AT4G23420 69.937 316 94 1 1 315 1 316 2.01e-164 460
MS.gene006264.t1 AT4G23420 69.937 316 94 1 1 315 1 316 2.01e-164 460
MS.gene006264.t1 AT4G23430 68.671 316 98 1 1 315 1 316 2.04e-163 458
MS.gene006264.t1 AT4G23420 69.108 314 96 1 3 315 20 333 7.70e-161 452
MS.gene006264.t1 AT4G11410 68.889 315 98 0 1 315 1 315 1.40e-160 451
MS.gene006264.t1 AT4G23430 68.038 316 98 2 1 315 1 314 4.62e-160 449
MS.gene006264.t1 AT4G23430 65.823 316 97 2 1 315 1 306 1.46e-153 432
MS.gene006264.t1 AT4G23430 65.190 316 97 3 1 315 1 304 4.42e-150 424
MS.gene006264.t1 AT4G23420 70.992 262 75 1 1 261 1 262 5.54e-136 386
MS.gene006264.t1 AT4G23420 75.949 237 57 0 1 237 1 237 9.49e-134 380
MS.gene006264.t1 AT2G37540 56.352 307 134 0 6 312 10 316 4.56e-127 366
MS.gene006264.t1 AT5G02540 59.935 307 123 0 6 312 10 316 6.03e-126 363
MS.gene006264.t1 AT4G11410 70.612 245 72 0 1 245 1 245 1.03e-123 355
MS.gene006264.t1 AT2G37540 59.072 237 97 0 6 242 10 246 3.10e-102 300
MS.gene006264.t1 AT4G24050 46.129 310 164 2 8 314 13 322 2.47e-88 268
MS.gene006264.t1 AT5G50130 46.624 311 162 3 8 314 13 323 8.66e-85 259
MS.gene006264.t1 AT5G50130 46.290 283 151 1 33 314 7 289 3.09e-78 241
MS.gene006264.t1 AT5G50130 46.479 284 150 2 33 314 7 290 9.12e-78 239
MS.gene006264.t1 AT1G64590 45.424 295 158 2 17 308 22 316 8.98e-74 230
MS.gene006264.t1 AT4G24050 46.212 264 137 3 8 268 13 274 5.47e-72 224
MS.gene006264.t1 AT5G50130 46.038 265 139 3 8 268 13 277 5.73e-70 220
MS.gene006264.t1 AT5G50130 46.241 266 138 4 8 268 13 278 1.81e-69 219
MS.gene006264.t1 AT5G50130 48.571 245 123 2 8 249 13 257 3.14e-69 216
MS.gene006264.t1 AT5G50130 48.780 246 122 3 8 249 13 258 1.07e-68 215
MS.gene006264.t1 AT5G50130 44.488 254 138 3 33 283 7 260 4.88e-63 201
MS.gene006264.t1 AT5G50130 44.706 255 137 4 33 283 7 261 1.58e-62 200
MS.gene006264.t1 AT4G27760 31.922 307 172 10 30 312 58 351 1.17e-31 122
MS.gene006264.t1 AT5G53090 32.226 301 179 6 30 312 57 350 1.08e-29 116
MS.gene006264.t1 AT1G03630 34.076 314 169 13 31 312 91 398 2.66e-28 113
MS.gene006264.t1 AT1G03630 34.076 314 169 13 31 312 89 396 3.24e-28 113
MS.gene006264.t1 AT5G54190 29.904 311 183 11 33 312 96 402 4.50e-28 112
MS.gene006264.t1 AT5G53100 32.026 306 176 10 30 312 45 341 2.51e-26 107
MS.gene006264.t1 AT4G09750 28.713 303 172 9 4 291 20 293 6.66e-26 105
MS.gene006264.t1 AT4G27440 32.476 311 175 13 33 312 92 398 8.82e-25 103
MS.gene006264.t1 AT4G27440 32.476 311 175 13 33 312 92 398 8.82e-25 103
MS.gene006264.t1 AT5G54190 27.368 285 173 10 58 312 1 281 2.82e-20 89.4
MS.gene006264.t1 AT5G15940 27.632 304 190 11 32 314 62 356 3.50e-19 87.4
MS.gene006264.t1 AT5G15940 27.632 304 190 11 32 314 63 357 4.12e-19 87.0
MS.gene006264.t1 AT5G15940 27.632 304 190 11 32 314 63 357 4.12e-19 87.0
MS.gene006264.t1 AT5G04070 28.477 302 188 8 32 314 61 353 7.06e-19 86.3
MS.gene006264.t1 AT3G59710 26.909 275 158 7 31 272 20 284 1.72e-14 73.2
MS.gene006264.t1 AT3G59710 26.715 277 160 7 31 274 30 296 2.11e-14 72.8
MS.gene006264.t1 AT3G59710 26.909 275 158 7 31 272 49 313 2.71e-14 72.8
MS.gene006264.t1 AT5G15940 27.354 223 145 5 32 241 63 281 8.16e-14 71.2
MS.gene006264.t1 AT5G61830 24.055 291 165 9 32 285 39 310 4.95e-13 68.9
MS.gene006264.t1 AT5G61830 24.055 291 165 9 32 285 39 310 4.95e-13 68.9

Find 72 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGCAAGAAAGGGGTTTC+TGG 0.179687 1.1:-72095540 MS.gene006264:CDS
CCTTCCCTGTGATTCTCTTT+TGG 0.235273 1.1:+72092823 None:intergenic
ATGCAGTTCAATGTTGTCTT+TGG 0.245720 1.1:+72094110 None:intergenic
TTTCAGCATGAATTTGATTA+AGG 0.259296 1.1:-72092771 MS.gene006264:CDS
GCGTGGTGTCCATGTGATTA+TGG 0.305515 1.1:-72095063 MS.gene006264:CDS
CACCAATCTTTCCCGCCATA+TGG 0.337645 1.1:-72093400 MS.gene006264:CDS
GATTTGGTTATTACCTTGAT+TGG 0.339925 1.1:+72093758 None:intergenic
TTGTCAAAACGGATTCCTTC+AGG 0.344301 1.1:+72093790 None:intergenic
CTGATTTGGCTAAGAAACTT+TGG 0.344972 1.1:-72092796 MS.gene006264:CDS
TTGTATACAGTTACAGCAAA+TGG 0.345777 1.1:-72093625 MS.gene006264:intron
CACTAACTCCCTTCACTTGT+GGG 0.347652 1.1:+72092873 None:intergenic
ACAGGGAAGGGACGCTGATT+TGG 0.349751 1.1:-72092810 MS.gene006264:CDS
AAAGGGGTTTCTGGATTCTC+AGG 0.371144 1.1:-72095531 MS.gene006264:CDS
GATTATGGCTGTTAGAAATA+AGG 0.377539 1.1:-72095048 MS.gene006264:CDS
GGAGTTAGATCTCAGTTCAT+TGG 0.382633 1.1:-72094961 MS.gene006264:CDS
GCATCAGAATTTAATTCCTC+TGG 0.388372 1.1:-72094921 MS.gene006264:CDS
ACAGGTATAATAAAGGTGAT+TGG 0.389434 1.1:-72093082 MS.gene006264:intron
ACCCATATGGCGGGAAAGAT+TGG 0.391956 1.1:+72093398 None:intergenic
TGATTTGGCTAAGAAACTTT+GGG 0.394235 1.1:-72092795 MS.gene006264:CDS
CCACTAACTCCCTTCACTTG+TGG 0.412556 1.1:+72092872 None:intergenic
CAGGTATAATAAAGGTGATT+GGG 0.427139 1.1:-72093081 MS.gene006264:CDS
TACAGCAAATGGGGTGCATA+TGG 0.428773 1.1:-72093614 MS.gene006264:CDS
ACAGGAGCATCCAGTGGTAT+TGG 0.435914 1.1:-72095113 MS.gene006264:intron
TGTATACAGTTACAGCAAAT+GGG 0.440853 1.1:-72093624 MS.gene006264:intron
CCACAAGTGAAGGGAGTTAG+TGG 0.447541 1.1:-72092872 MS.gene006264:CDS
ACAAAATTAATGACCAATCA+AGG 0.448930 1.1:-72093771 MS.gene006264:intron
TTATGCAACAGGTATAATAA+AGG 0.452058 1.1:-72093089 MS.gene006264:intron
GAGGCGTCTTGCAAGCTCAT+TGG 0.461840 1.1:+72093562 None:intergenic
TTACATCTTGATCAGGCTGA+TGG 0.465863 1.1:-72093465 MS.gene006264:intron
ATGTGGCCATTCAGCAAGAA+AGG 0.469855 1.1:-72095549 MS.gene006264:CDS
GAAACCCCTTTCTTGCTGAA+TGG 0.470036 1.1:+72095543 None:intergenic
TCTTACATCAAGATGTTCAA+TGG 0.471739 1.1:+72094894 None:intergenic
AGATTGGTGAGAATGATTCC+TGG 0.477751 1.1:+72093414 None:intergenic
ACTCATGGAATTGATGCAAC+TGG 0.489575 1.1:-72095486 MS.gene006264:CDS
TTGTCTTTGGACAGCATGAA+AGG 0.496194 1.1:+72094123 None:intergenic
CTCAGCTAAAATAGATGTCA+TGG 0.499752 1.1:-72094982 MS.gene006264:CDS
TGTGGCCATTCAGCAAGAAA+GGG 0.508330 1.1:-72095548 MS.gene006264:CDS
ACCAATCTTTCCCGCCATAT+GGG 0.511754 1.1:-72093399 MS.gene006264:CDS
GGCCTCACTGCTATTGTCAC+TGG 0.512117 1.1:-72095465 MS.gene006264:intron
TACATCTTGATCAGGCTGAT+GGG 0.514593 1.1:-72093464 MS.gene006264:intron
CAGCATGAATTTGATTAAGG+AGG 0.517327 1.1:-72092768 MS.gene006264:CDS
TGTGGCCAAAAGAGAATCAC+AGG 0.521249 1.1:-72092828 MS.gene006264:CDS
GCACATGAAAGTAAGAAAGA+AGG 0.529008 1.1:-72093856 MS.gene006264:CDS
ATTGTGAATTCTCTTCATCC+AGG 0.539076 1.1:-72093432 MS.gene006264:CDS
AGCATTGCACCCACAAGTGA+AGG 0.549189 1.1:-72092882 MS.gene006264:CDS
CGCCATATGGGTGTACTCGA+CGG 0.553447 1.1:-72093387 MS.gene006264:intron
TGTCTTTGGACAGCATGAAA+GGG 0.554321 1.1:+72094124 None:intergenic
GTAATTGCAAGAAACAATGC+AGG 0.558972 1.1:-72094159 MS.gene006264:intron
TACCGTCGAGTACACCCATA+TGG 0.560447 1.1:+72093385 None:intergenic
TACATATTTGCATATCCTGA+AGG 0.560462 1.1:-72093805 MS.gene006264:CDS
ACTGCTGAAGAAGTTACTCA+TGG 0.562997 1.1:-72095501 MS.gene006264:CDS
TGAGCTTGCAAGACGCCTCA+AGG 0.566834 1.1:-72093558 MS.gene006264:intron
TCTTGATCAGGCTGATGGGG+TGG 0.576337 1.1:-72093460 MS.gene006264:intron
AGTCTCAACTCCAATACCAC+TGG 0.581087 1.1:+72095103 None:intergenic
CAAAAGAGAATCACAGGGAA+GGG 0.585563 1.1:-72092822 MS.gene006264:CDS
AAGGGGTTTCTGGATTCTCA+GGG 0.585889 1.1:-72095530 MS.gene006264:CDS
ATGCGTGTTCTTGCTTTGCG+TGG 0.595996 1.1:-72095080 MS.gene006264:CDS
GTCGAGTACACCCATATGGC+GGG 0.601642 1.1:+72093389 None:intergenic
ACATCTTGATCAGGCTGATG+GGG 0.610650 1.1:-72093463 MS.gene006264:intron
TATCAAAGAAGCAATACTGA+AGG 0.612664 1.1:-72095012 MS.gene006264:CDS
CCAAAAGAGAATCACAGGGA+AGG 0.615970 1.1:-72092823 MS.gene006264:CDS
TTCTAACAGCCATAATCACA+TGG 0.621462 1.1:+72095054 None:intergenic
GCATTGCACCCACAAGTGAA+GGG 0.624705 1.1:-72092881 MS.gene006264:CDS
CAATGCTACATAGCATGTTG+TGG 0.627328 1.1:+72092898 None:intergenic
GTGGCCATTCAGCAAGAAAG+GGG 0.627372 1.1:-72095547 MS.gene006264:CDS
GTATACAGTTACAGCAAATG+GGG 0.659776 1.1:-72093623 MS.gene006264:intron
GATGTTCAATGGAAGACCAG+AGG 0.666537 1.1:+72094905 None:intergenic
ATGGTAACAGGAGCATCCAG+TGG 0.683391 1.1:-72095119 MS.gene006264:intron
ATATTTCCCACATACCTAGG+TGG 0.684024 1.1:+72094076 None:intergenic
CGTCGAGTACACCCATATGG+CGG 0.693238 1.1:+72093388 None:intergenic
GACCAGTGACAATAGCAGTG+AGG 0.746778 1.1:+72095463 None:intergenic
GTGGCCAAAAGAGAATCACA+GGG 0.763656 1.1:-72092827 MS.gene006264:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAACTTAATTATAT+AGG + chr1.1:72094285-72094304 None:intergenic 10.0%
!! CAAAATAAATAGTAAATAAA+AGG + chr1.1:72094041-72094060 None:intergenic 10.0%
!! AAAAACTACTATTTAACAAA+GGG + chr1.1:72092929-72092948 None:intergenic 15.0%
!! ATAATCTTGAAGTTAAATTA+TGG + chr1.1:72093065-72093084 None:intergenic 15.0%
!! TAAAAACTACTATTTAACAA+AGG + chr1.1:72092930-72092949 None:intergenic 15.0%
!!! AAATTATTTTATGGATATGA+TGG - chr1.1:72093169-72093188 MS.gene006264:intron 15.0%
!!! CTTTAAAAAAATAGATTTTG+AGG + chr1.1:72093973-72093992 None:intergenic 15.0%
!!! TTTTCTGTTAACATTAAAAA+AGG + chr1.1:72093556-72093575 None:intergenic 15.0%
!! AAAACTTTAGATTAAGTTAG+AGG + chr1.1:72093503-72093522 None:intergenic 20.0%
!! TATCATTCATCTACATTTAT+AGG - chr1.1:72095093-72095112 MS.gene006264:CDS 20.0%
!! TCAAAAAAATCCAAAACAAA+CGG + chr1.1:72093843-72093862 None:intergenic 20.0%
!! TCATTGAACAATATATGATA+AGG + chr1.1:72093695-72093714 None:intergenic 20.0%
!! TGTAAATTATGTAATTGTAC+AGG - chr1.1:72094387-72094406 MS.gene006264:intron 20.0%
!!! ACTTAATTATATAGGTTGAT+TGG + chr1.1:72094277-72094296 None:intergenic 20.0%
!!! ATATTTTTCAGACAATAATG+TGG - chr1.1:72095466-72095485 MS.gene006264:CDS 20.0%
!!! GAATTTTATGTAAAATCACA+CGG + chr1.1:72093132-72093151 None:intergenic 20.0%
!!! GGCTATGATAAATTATTTTA+TGG - chr1.1:72093160-72093179 MS.gene006264:intron 20.0%
!!! GTTAACAGAAAAACTTTTTA+TGG - chr1.1:72093564-72093583 MS.gene006264:CDS 20.0%
!!! TTTTATGTTGCAGAATTATT+TGG - chr1.1:72092945-72092964 MS.gene006264:intron 20.0%
! AATCAGTTCAAATAAATGTG+AGG - chr1.1:72095290-72095309 MS.gene006264:intron 25.0%
! ACAAAATTAATGACCAATCA+AGG - chr1.1:72094541-72094560 MS.gene006264:intron 25.0%
! AGGATCAGTTCAAATAAAAT+TGG - chr1.1:72095310-72095329 MS.gene006264:intron 25.0%
! CAAAAAAATCCAAAACAAAC+GGG + chr1.1:72093842-72093861 None:intergenic 25.0%
! CATGATCAAGAAAGATAAAA+TGG + chr1.1:72094126-72094145 None:intergenic 25.0%
! CGTGTTGAAACTTTAAATTA+AGG - chr1.1:72093815-72093834 MS.gene006264:CDS 25.0%
! TAAGAATGAAAGTTAGTTGA+AGG - chr1.1:72093746-72093765 MS.gene006264:intron 25.0%
! TGAAGGCTGTAAATATAAAA+GGG - chr1.1:72093763-72093782 MS.gene006264:intron 25.0%
! TTACATAAAATTCTTGCAAC+TGG - chr1.1:72093139-72093158 MS.gene006264:intron 25.0%
! TTATGCAACAGGTATAATAA+AGG - chr1.1:72095223-72095242 MS.gene006264:intron 25.0%
! TTCTTTAAATGCTTAAACTG+TGG - chr1.1:72094337-72094356 MS.gene006264:intron 25.0%
! TTGAAGGCTGTAAATATAAA+AGG - chr1.1:72093762-72093781 MS.gene006264:intron 25.0%
! TTTCAGCATGAATTTGATTA+AGG - chr1.1:72095541-72095560 MS.gene006264:CDS 25.0%
! TTTGAACTTATGTTACCTAT+TGG + chr1.1:72094579-72094598 None:intergenic 25.0%
!! ATTTTATGGATATGATGGTA+TGG - chr1.1:72093174-72093193 MS.gene006264:intron 25.0%
!! GGTCATTAATTTTGTCAAAA+CGG + chr1.1:72094536-72094555 None:intergenic 25.0%
!! TGTCATTACTACACATTTTA+TGG + chr1.1:72095165-72095184 None:intergenic 25.0%
!! TTATGTTTGATTTATGCAAC+AGG - chr1.1:72095212-72095231 MS.gene006264:intron 25.0%
!!! TTTGTTTTTGTGTGTAAAAC+TGG - chr1.1:72094791-72094810 MS.gene006264:intron 25.0%
ACAGGTATAATAAAGGTGAT+TGG - chr1.1:72095230-72095249 MS.gene006264:intron 30.0%
ACTTTCTCCTATCTAAATGT+AGG - chr1.1:72095385-72095404 MS.gene006264:intron 30.0%
AGGTAATAACCAAATCCAAT+AGG - chr1.1:72094561-72094580 MS.gene006264:intron 30.0%
ATGAAGAATTAAGAGTGGAA+AGG - chr1.1:72094644-72094663 MS.gene006264:intron 30.0%
CAGGTATAATAAAGGTGATT+GGG - chr1.1:72095231-72095250 MS.gene006264:intron 30.0%
CATTATCTACCAATGTTATG+TGG - chr1.1:72095040-72095059 MS.gene006264:CDS 30.0%
CTTAATTCTTCATGCAACTA+AGG + chr1.1:72094637-72094656 None:intergenic 30.0%
CTTATGTTACCTATTGGATT+TGG + chr1.1:72094573-72094592 None:intergenic 30.0%
CTTTCTCCTATCTAAATGTA+GGG - chr1.1:72095386-72095405 MS.gene006264:intron 30.0%
GAACATCTTGATGTAAGAAA+AGG - chr1.1:72093423-72093442 MS.gene006264:CDS 30.0%
GATTATGGCTGTTAGAAATA+AGG - chr1.1:72093264-72093283 MS.gene006264:intron 30.0%
TACATATTTGCATATCCTGA+AGG - chr1.1:72094507-72094526 MS.gene006264:intron 30.0%
TATAAAAGGGTAACTTGACA+CGG - chr1.1:72093776-72093795 MS.gene006264:CDS 30.0%
TATCAAAGAAGCAATACTGA+AGG - chr1.1:72093300-72093319 MS.gene006264:intron 30.0%
TCTTACATCAAGATGTTCAA+TGG + chr1.1:72093421-72093440 None:intergenic 30.0%
TGTATACAGTTACAGCAAAT+GGG - chr1.1:72094688-72094707 MS.gene006264:intron 30.0%
TTGTATACAGTTACAGCAAA+TGG - chr1.1:72094687-72094706 MS.gene006264:intron 30.0%
TTTCTCCTATCTAAATGTAG+GGG - chr1.1:72095387-72095406 MS.gene006264:intron 30.0%
! ATGACAGTATCTGAGTTTTA+TGG - chr1.1:72095179-72095198 MS.gene006264:intron 30.0%
! ATTTAGAATGTCATGTCACA+GGG + chr1.1:72095008-72095027 None:intergenic 30.0%
! GATTTGGTTATTACCTTGAT+TGG + chr1.1:72094557-72094576 None:intergenic 30.0%
! TCTCTTGACAAATCTTTTGT+TGG - chr1.1:72094416-72094435 MS.gene006264:intron 30.0%
! TGATTTGGCTAAGAAACTTT+GGG - chr1.1:72095517-72095536 MS.gene006264:CDS 30.0%
! TGCAAATATGTAAGCTTTTG+CGG + chr1.1:72094499-72094518 None:intergenic 30.0%
!! ATTTGCTGTAACTGTATACA+AGG + chr1.1:72094688-72094707 None:intergenic 30.0%
!!! ATGACATCTATTTTAGCTGA+GGG + chr1.1:72093331-72093350 None:intergenic 30.0%
!!! GGGAAATATGTTTGGTTTTA+AGG - chr1.1:72094250-72094269 MS.gene006264:intron 30.0%
AAATGGAACACAGATACTCA+TGG + chr1.1:72094109-72094128 None:intergenic 35.0%
AACATATTTCCCACATACCT+AGG + chr1.1:72094242-72094261 None:intergenic 35.0%
AAGAATTAAGAGTGGAAAGG+TGG - chr1.1:72094647-72094666 MS.gene006264:intron 35.0%
ACAAATGCACCCTAAGTTAA+AGG - chr1.1:72093998-72094017 MS.gene006264:intron 35.0%
AGGTATGTGGGAAATATGTT+TGG - chr1.1:72094242-72094261 MS.gene006264:intron 35.0%
ATAAAAGGCAAATCTGCACA+TGG + chr1.1:72094026-72094045 None:intergenic 35.0%
ATAAAAGGGTAACTTGACAC+GGG - chr1.1:72093777-72093796 MS.gene006264:CDS 35.0%
ATGCAGTTCAATGTTGTCTT+TGG + chr1.1:72094205-72094224 None:intergenic 35.0%
ATTGTGAATTCTCTTCATCC+AGG - chr1.1:72094880-72094899 MS.gene006264:intron 35.0%
CAGCATGAATTTGATTAAGG+AGG - chr1.1:72095544-72095563 MS.gene006264:CDS 35.0%
CCTGGATAAAAAATGATCCT+GGG + chr1.1:72093462-72093481 None:intergenic 35.0%
CTCAGCTAAAATAGATGTCA+TGG - chr1.1:72093330-72093349 MS.gene006264:intron 35.0%
CTGTAACTGTATACAAGGAA+GGG + chr1.1:72094683-72094702 None:intergenic 35.0%
CTTGATGTAAGAAAAGGAAC+TGG - chr1.1:72093429-72093448 MS.gene006264:CDS 35.0%
GCACATGAAAGTAAGAAAGA+AGG - chr1.1:72094456-72094475 MS.gene006264:intron 35.0%
GCATCAGAATTTAATTCCTC+TGG - chr1.1:72093391-72093410 MS.gene006264:CDS 35.0%
GTAATTGCAAGAAACAATGC+AGG - chr1.1:72094153-72094172 MS.gene006264:intron 35.0%
GTATACAGTTACAGCAAATG+GGG - chr1.1:72094689-72094708 MS.gene006264:intron 35.0%
GTTGCATGAAGAATTAAGAG+TGG - chr1.1:72094639-72094658 MS.gene006264:intron 35.0%
TAAAAGGCAAATCTGCACAT+GGG + chr1.1:72094025-72094044 None:intergenic 35.0%
TGTGATGAAAAATGTTCAGC+AGG - chr1.1:72095259-72095278 MS.gene006264:intron 35.0%
TTCTAACAGCCATAATCACA+TGG + chr1.1:72093261-72093280 None:intergenic 35.0%
TTCTCCTATCTAAATGTAGG+GGG - chr1.1:72095388-72095407 MS.gene006264:intron 35.0%
! AATTAAGGTCCCGTTTGTTT+TGG - chr1.1:72093830-72093849 MS.gene006264:CDS 35.0%
! CATTTAGAATGTCATGTCAC+AGG + chr1.1:72095009-72095028 None:intergenic 35.0%
! TCACTTGTTACATCTTGATC+AGG - chr1.1:72094840-72094859 MS.gene006264:intron 35.0%
!! CTGATTTGGCTAAGAAACTT+TGG - chr1.1:72095516-72095535 MS.gene006264:CDS 35.0%
!!! CATGACATCTATTTTAGCTG+AGG + chr1.1:72093332-72093351 None:intergenic 35.0%
!!! TAGGTGTTTTATTTGCACAC+TGG - chr1.1:72095112-72095131 MS.gene006264:CDS 35.0%
AATGTTATGTGGCACTATCG+TGG - chr1.1:72095051-72095070 MS.gene006264:CDS 40.0%
ACGATAGTGCCACATAACAT+TGG + chr1.1:72095052-72095071 None:intergenic 40.0%
ACTCATGGAATTGATGCAAC+TGG - chr1.1:72092826-72092845 MS.gene006264:CDS 40.0%
ACTGCTGAAGAAGTTACTCA+TGG - chr1.1:72092811-72092830 MS.gene006264:CDS 40.0%
AGAGAAACTAGCATACCTTG+AGG + chr1.1:72094772-72094791 None:intergenic 40.0%
AGATTGGTGAGAATGATTCC+TGG + chr1.1:72094901-72094920 None:intergenic 40.0%
ATATTTCCCACATACCTAGG+TGG + chr1.1:72094239-72094258 None:intergenic 40.0%
CAAAAGAGAATCACAGGGAA+GGG - chr1.1:72095490-72095509 MS.gene006264:CDS 40.0%
CAATGCTACATAGCATGTTG+TGG + chr1.1:72095417-72095436 None:intergenic 40.0%
CTGCTGAAATTTGCATAGTC+AGG - chr1.1:72093087-72093106 MS.gene006264:intron 40.0%
GCCTGGATAAAAAATGATCC+TGG + chr1.1:72093463-72093482 None:intergenic 40.0%
GCTGTAACTGTATACAAGGA+AGG + chr1.1:72094684-72094703 None:intergenic 40.0%
GGAGTTAGATCTCAGTTCAT+TGG - chr1.1:72093351-72093370 MS.gene006264:intron 40.0%
GGATATGATGGTATGGTAAC+AGG - chr1.1:72093181-72093200 MS.gene006264:intron 40.0%
TAAAAGGGTAACTTGACACG+GGG - chr1.1:72093778-72093797 MS.gene006264:CDS 40.0%
TACAAACCACCTAGGTATGT+GGG - chr1.1:72094230-72094249 MS.gene006264:intron 40.0%
TACATCTTGATCAGGCTGAT+GGG - chr1.1:72094848-72094867 MS.gene006264:intron 40.0%
TATGATAAGGAAACCCCCAA+TGG + chr1.1:72093682-72093701 None:intergenic 40.0%
TCAGATTCGAATCCTTCTGT+GGG + chr1.1:72093608-72093627 None:intergenic 40.0%
TGTAAGAAAAGGAACTGGCT+TGG - chr1.1:72093434-72093453 MS.gene006264:CDS 40.0%
TGTCTTTGGACAGCATGAAA+GGG + chr1.1:72094191-72094210 None:intergenic 40.0%
TTACATCTTGATCAGGCTGA+TGG - chr1.1:72094847-72094866 MS.gene006264:intron 40.0%
TTGTCTTTGGACAGCATGAA+AGG + chr1.1:72094192-72094211 None:intergenic 40.0%
! CACATGGGTCCTTTAACTTA+GGG + chr1.1:72094010-72094029 None:intergenic 40.0%
! CATTTTGCTACAAACCACCT+AGG - chr1.1:72094222-72094241 MS.gene006264:intron 40.0%
! GCACTATCGTGGATTTTACA+AGG - chr1.1:72095062-72095081 MS.gene006264:CDS 40.0%
! TTGTCAAAACGGATTCCTTC+AGG + chr1.1:72094525-72094544 None:intergenic 40.0%
!!! CCCAGGATCATTTTTTATCC+AGG - chr1.1:72093459-72093478 MS.gene006264:intron 40.0%
ACATCTTGATCAGGCTGATG+GGG - chr1.1:72094849-72094868 MS.gene006264:intron 45.0%
ACCAATCTTTCCCGCCATAT+GGG - chr1.1:72094913-72094932 MS.gene006264:CDS 45.0%
AGTCTCAACTCCAATACCAC+TGG + chr1.1:72093212-72093231 None:intergenic 45.0%
ATAAGGAAACCCCCAATGGT+TGG + chr1.1:72093678-72093697 None:intergenic 45.0%
ATGTGGCCATTCAGCAAGAA+AGG - chr1.1:72092763-72092782 MS.gene006264:CDS 45.0%
CACTAACTCCCTTCACTTGT+GGG + chr1.1:72095442-72095461 None:intergenic 45.0%
CCAAAAGAGAATCACAGGGA+AGG - chr1.1:72095489-72095508 MS.gene006264:CDS 45.0%
CTACAAACCACCTAGGTATG+TGG - chr1.1:72094229-72094248 MS.gene006264:intron 45.0%
CTCAGATTCGAATCCTTCTG+TGG + chr1.1:72093609-72093628 None:intergenic 45.0%
GAAACCCCTTTCTTGCTGAA+TGG + chr1.1:72092772-72092791 None:intergenic 45.0%
GATGTTCAATGGAAGACCAG+AGG + chr1.1:72093410-72093429 None:intergenic 45.0%
GTGGCCAAAAGAGAATCACA+GGG - chr1.1:72095485-72095504 MS.gene006264:CDS 45.0%
TACAGCAAATGGGGTGCATA+TGG - chr1.1:72094698-72094717 MS.gene006264:intron 45.0%
TATCCAGGCAAAACTGCACT+AGG - chr1.1:72093474-72093493 MS.gene006264:intron 45.0%
TGTGGCCAAAAGAGAATCAC+AGG - chr1.1:72095484-72095503 MS.gene006264:CDS 45.0%
TGTGGCCATTCAGCAAGAAA+GGG - chr1.1:72092764-72092783 MS.gene006264:CDS 45.0%
TTCAGCAAGAAAGGGGTTTC+TGG - chr1.1:72092772-72092791 MS.gene006264:CDS 45.0%
! AAAGGGGTTTCTGGATTCTC+AGG - chr1.1:72092781-72092800 MS.gene006264:CDS 45.0%
! AAGGGGTTTCTGGATTCTCA+GGG - chr1.1:72092782-72092801 MS.gene006264:CDS 45.0%
! AATCCTAGTGCAGTTTTGCC+TGG + chr1.1:72093480-72093499 None:intergenic 45.0%
! CCTTCCCTGTGATTCTCTTT+TGG + chr1.1:72095492-72095511 None:intergenic 45.0%
! GCACATGGGTCCTTTAACTT+AGG + chr1.1:72094011-72094030 None:intergenic 45.0%
! TCACGACAAGATGTGCTGTT+AGG - chr1.1:72094599-72094618 MS.gene006264:intron 45.0%
! TTCGAATCTGAGACTTTGCG+AGG - chr1.1:72093617-72093636 MS.gene006264:CDS 45.0%
!!! AAAATGAAATTTTTTAAAAA+TGG + chr1.1:72092897-72092916 None:intergenic 5.0%
ACACCACTAGGCCAACCATT+GGG - chr1.1:72093664-72093683 MS.gene006264:intron 50.0%
AGCATTGCACCCACAAGTGA+AGG - chr1.1:72095430-72095449 MS.gene006264:intron 50.0%
ATGCGTGTTCTTGCTTTGCG+TGG - chr1.1:72093232-72093251 MS.gene006264:intron 50.0%
CACCAATCTTTCCCGCCATA+TGG - chr1.1:72094912-72094931 MS.gene006264:CDS 50.0%
CCACAAGTGAAGGGAGTTAG+TGG - chr1.1:72095440-72095459 MS.gene006264:intron 50.0%
CCACTAACTCCCTTCACTTG+TGG + chr1.1:72095443-72095462 None:intergenic 50.0%
CTTCTGTGGGCAACTTCTGT+GGG + chr1.1:72093595-72093614 None:intergenic 50.0%
GACCAGTGACAATAGCAGTG+AGG + chr1.1:72092852-72092871 None:intergenic 50.0%
GCATTGCACCCACAAGTGAA+GGG - chr1.1:72095431-72095450 MS.gene006264:intron 50.0%
GCGTGGTGTCCATGTGATTA+TGG - chr1.1:72093249-72093268 MS.gene006264:intron 50.0%
GCTGCCCCCTACATTTAGAT+AGG + chr1.1:72095395-72095414 None:intergenic 50.0%
GGTCTTAAGCCTACACCACT+AGG - chr1.1:72093652-72093671 MS.gene006264:intron 50.0%
GTGGCCATTCAGCAAGAAAG+GGG - chr1.1:72092765-72092784 MS.gene006264:CDS 50.0%
TACACCACTAGGCCAACCAT+TGG - chr1.1:72093663-72093682 MS.gene006264:intron 50.0%
TACCGTCGAGTACACCCATA+TGG + chr1.1:72094930-72094949 None:intergenic 50.0%
TTTGCGAGGAGCTCACTTCA+AGG - chr1.1:72093631-72093650 MS.gene006264:intron 50.0%
! ACCCATATGGCGGGAAAGAT+TGG + chr1.1:72094917-72094936 None:intergenic 50.0%
!! AATGGTTGGCCTAGTGGTGT+AGG + chr1.1:72093664-72093683 None:intergenic 50.0%
!! ACAGGAGCATCCAGTGGTAT+TGG - chr1.1:72093199-72093218 MS.gene006264:intron 50.0%
!! ATGGTAACAGGAGCATCCAG+TGG - chr1.1:72093193-72093212 MS.gene006264:intron 50.0%
ACCACTAGGCCAACCATTGG+GGG - chr1.1:72093666-72093685 MS.gene006264:intron 55.0%
CACCACTAGGCCAACCATTG+GGG - chr1.1:72093665-72093684 MS.gene006264:intron 55.0%
CCACAGAAGTTGCCCACAGA+AGG - chr1.1:72093593-72093612 MS.gene006264:CDS 55.0%
CCTTCTGTGGGCAACTTCTG+TGG + chr1.1:72093596-72093615 None:intergenic 55.0%
CGCCATATGGGTGTACTCGA+CGG - chr1.1:72094925-72094944 MS.gene006264:CDS 55.0%
CGTCGAGTACACCCATATGG+CGG + chr1.1:72094927-72094946 None:intergenic 55.0%
GGCCTCACTGCTATTGTCAC+TGG - chr1.1:72092847-72092866 MS.gene006264:CDS 55.0%
GTCGAGTACACCCATATGGC+GGG + chr1.1:72094926-72094945 None:intergenic 55.0%
TCTTGATCAGGCTGATGGGG+TGG - chr1.1:72094852-72094871 MS.gene006264:intron 55.0%
TGAGCTTGCAAGACGCCTCA+AGG - chr1.1:72094754-72094773 MS.gene006264:intron 55.0%
! ACAGGGAAGGGACGCTGATT+TGG - chr1.1:72095502-72095521 MS.gene006264:CDS 55.0%
! GAGGCGTCTTGCAAGCTCAT+TGG + chr1.1:72094753-72094772 None:intergenic 55.0%
!! AAGGAACTGGCTTGGATCCC+AGG - chr1.1:72093442-72093461 MS.gene006264:CDS 55.0%
!! ACCCCCAATGGTTGGCCTAG+TGG + chr1.1:72093670-72093689 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72092763 72095571 72092763 ID=MS.gene006264
chr1.1 mRNA 72092763 72095571 72092763 ID=MS.gene006264.t1;Parent=MS.gene006264
chr1.1 exon 72095466 72095571 72095466 ID=MS.gene006264.t1.exon1;Parent=MS.gene006264.t1
chr1.1 CDS 72095466 72095571 72095466 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72094900 72095131 72094900 ID=MS.gene006264.t1.exon2;Parent=MS.gene006264.t1
chr1.1 CDS 72094900 72095131 72094900 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72094091 72094170 72094091 ID=MS.gene006264.t1.exon3;Parent=MS.gene006264.t1
chr1.1 CDS 72094091 72094170 72094091 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72093772 72093925 72093772 ID=MS.gene006264.t1.exon4;Parent=MS.gene006264.t1
chr1.1 CDS 72093772 72093925 72093772 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72093559 72093637 72093559 ID=MS.gene006264.t1.exon5;Parent=MS.gene006264.t1
chr1.1 CDS 72093559 72093637 72093559 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72093388 72093472 72093388 ID=MS.gene006264.t1.exon6;Parent=MS.gene006264.t1
chr1.1 CDS 72093388 72093472 72093388 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72093054 72093100 72093054 ID=MS.gene006264.t1.exon7;Parent=MS.gene006264.t1
chr1.1 CDS 72093054 72093100 72093054 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
chr1.1 exon 72092763 72092927 72092763 ID=MS.gene006264.t1.exon8;Parent=MS.gene006264.t1
chr1.1 CDS 72092763 72092927 72092763 ID=cds.MS.gene006264.t1;Parent=MS.gene006264.t1
Gene Sequence

>MS.gene006264

ATGTGGCCATTCAGCAAGAAAGGGGTTTCTGGATTCTCAGGGAGTTCAACTGCTGAAGAAGTTACTCATGGAATTGATGCAACTGGCCTCACTGCTATTGTCACTGGTCTATCTTCTATTACTCTTTCTTACCATTTTTAAAAAATTTCATTTTTCAAGCATGCCCTTTGTTAAATAGTAGTTTTTATGTTGCAGAATTATTTGGAATTATTAGTCTGTATGTATGTATATATGTAGCTTTTCATCACTTAGACTTGAGAAGTGATTAACAAGCTTTTTAATGATCTTTGTAGTTGACTCCATAATTTAACTTCAAGATTATTGCTGCTGAAATTTGCATAGTCAGGATTTATTTGTTTATATATTCCGTGTGATTTTACATAAAATTCTTGCAACTGGCTATGATAAATTATTTTATGGATATGATGGTATGGTAACAGGAGCATCCAGTGGTATTGGAGTTGAGACTATGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTGCTGCTAATGATATCAAAGAAGCAATACTGAAGGAGATTCCCTCAGCTAAAATAGATGTCATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTTGCATCAGAATTTAATTCCTCTGGTCTTCCATTGAACATCTTGATGTAAGAAAAGGAACTGGCTTGGATCCCAGGATCATTTTTTATCCAGGCAAAACTGCACTAGGATTCCTCTAACTTAATCTAAAGTTTTAAATGAGTCTTATTTTCGTGTCAAATTAGTCCTTTTTTAATGTTAACAGAAAAACTTTTTATGGACTAGCCCACAGAAGTTGCCCACAGAAGGATTCGAATCTGAGACTTTGCGAGGAGCTCACTTCAAGGTCTTAAGCCTACACCACTAGGCCAACCATTGGGGGTTTCCTTATCATATATTGTTCAATGATCGTGTACACAAATTTGTAACAAAAGTAAACTAAGAATGAAAGTTAGTTGAAGGCTGTAAATATAAAAGGGTAACTTGACACGGGGAAAAAGATAAAAGACGTGTTGAAACTTTAAATTAAGGTCCCGTTTGTTTTGGATTTTTTTGAAAAAAAATCTATTTTTTTTAACTAAAAAATCACTTTTATTTATTTATTTTTGTAGTGTTTGTTTTAGATTCTTAAAAAATTCATTTTGTTAAAAAAATCATTTTTAGCCTCAAAATCTATTTTTTTAAAGCTGAAACAAATGCACCCTAAGTTAAAGGACCCATGTGCAGATTTGCCTTTTATTTACTATTTATTTTGACTGCTAGATTTTTATTGAAGTTGTTAATTACTTGTTCTCTCTTACCATGAGTATCTGTGTTCCATTTTATCTTTCTTGATCATGTTCATTTGTAATTGCAAGAAACAATGCAGGAATCATGTTATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTGCATTTTGCTACAAACCACCTAGGTATGTGGGAAATATGTTTGGTTTTAAGGTCCAATCAACCTATATAATTAAGTTATATGTTTTATATAAAACATCAAGTAATTATTTTACTGATTCTTTAAATGCTTAAACTGTGGAGATGTGATCATTCTGTTTTTATGTAATGTAAATTATGTAATTGTACAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGAAGAAAACAGCACATGAAAGTAAGAAAGAAGGAAGAATTGTTAATGTCTCCGCAAAAGCTTACATATTTGCATATCCTGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGGTAATAACCAAATCCAATAGGTAACATAAGTTCAAATCACGACAAGATGTGCTGTTAGGACAATTGTCTCACCTTAGTTGCATGAAGAATTAAGAGTGGAAAGGTGGTAAATATGTTCCCTTCCTTGTATACAGTTACAGCAAATGGGGTGCATATGGACAGTCAAAGCTTGCTAACATTTTACATGCCAATGAGCTTGCAAGACGCCTCAAGGTATGCTAGTTTCTCTTTGTTTTTGTGTGTAAAACTGGTTCTTTGTTTTGATATATTTATAACATCACTTGTTACATCTTGATCAGGCTGATGGGGTGGATATCATTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTACTCGACGGTAACTATTATCTTGTATCATTCATCTCAATTCATGATTTGTCTATAAATTATTAAAGCCCTGTGACATGACATTCTAAATGATTTTTTTCTGCATTATCTACCAATGTTATGTGGCACTATCGTGGATTTTACAAGGAGACAAGCTATCATTCATCTACATTTATAGGTGTTTTATTTGCACACTGGCATTCTACAACACTAGCACTCTAGTGTCCATAAAATGTGTAGTAATGACAGTATCTGAGTTTTATGGATATTGCTACTTATGTTTGATTTATGCAACAGGTATAATAAAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGTATGTCATAATCAGTTCAAATAAATGTGAGGATCAGTTCAAATAAAATTGGTTGTTATAAACATTTATTAACTAAACATAGATTAGTAGTCAGTTTCATGTTAACTTTCTCCTATCTAAATGTAGGGGGCAGCCACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAGTTAGTGGTGAATATTTTTCAGACAATAATGTGGCCAAAAGAGAATCACAGGGAAGGGACGCTGATTTGGCTAAGAAACTTTGGGATTTCAGCATGAATTTGATTAAGGAGGAATAG
Protein sequence

>MS.gene006264.t1

MWPFSKKGVSGFSGSSTAEEVTHGIDATGLTAIVTGASSGIGVETMRVLALRGVHVIMAVRNKVAANDIKEAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGLPLNILINNAGIMLCPFMLSKDNIELHFATNHLGHFLLTNLLLDTMKKTAHESKKEGRIVNVSAKAYIFAYPEGIRFDKINDQSSYSKWGAYGQSKLANILHANELARRLKADGVDIIVNSLHPGIILTNLSRHMGVLDGIIKVIGKLVMKNVQQGAATTCYVALHPQVKGVSGEYFSDNNVAKRESQGRDADLAKKLWDFSMNLIKEE