Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34140.t1 | XP_013469646.1 | 94.6 | 315 | 17 | 0 | 45 | 359 | 1 | 315 | 8.40E-163 | 583.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34140.t1 | Q6RVV4 | 79.7 | 316 | 63 | 1 | 45 | 359 | 1 | 316 | 1.3e-140 | 500.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34140.t1 | A0A072VNT5 | 94.6 | 315 | 17 | 0 | 45 | 359 | 1 | 315 | 6.0e-163 | 583.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050883 | MS.gene34140 | 0.81254 | 4.03E-51 | -1.69E-46 |
| MS.gene051127 | MS.gene34140 | 0.83065 | 2.61E-55 | -1.69E-46 |
| MS.gene051138 | MS.gene34140 | 0.806139 | 9.51E-50 | -1.69E-46 |
| MS.gene051440 | MS.gene34140 | 0.804252 | 2.36E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene34140 | 0.817293 | 3.55E-52 | -1.69E-46 |
| MS.gene053420 | MS.gene34140 | 0.815804 | 7.66E-52 | -1.69E-46 |
| MS.gene05470 | MS.gene34140 | -0.816499 | 5.36E-52 | -1.69E-46 |
| MS.gene055240 | MS.gene34140 | 0.824408 | 8.20E-54 | -1.69E-46 |
| MS.gene056218 | MS.gene34140 | 0.815367 | 9.59E-52 | -1.69E-46 |
| MS.gene056298 | MS.gene34140 | 0.804732 | 1.88E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene34140 | 0.80158 | 8.42E-49 | -1.69E-46 |
| MS.gene056591 | MS.gene34140 | 0.800851 | 1.19E-48 | -1.69E-46 |
| MS.gene056748 | MS.gene34140 | 0.844335 | 8.06E-59 | -1.69E-46 |
| MS.gene057768 | MS.gene34140 | 0.814509 | 1.49E-51 | -1.69E-46 |
| MS.gene058117 | MS.gene34140 | 0.819896 | 9.13E-53 | -1.69E-46 |
| MS.gene058171 | MS.gene34140 | 0.82439 | 8.29E-54 | -1.69E-46 |
| MS.gene058173 | MS.gene34140 | 0.818031 | 2.42E-52 | -1.69E-46 |
| MS.gene058175 | MS.gene34140 | 0.822415 | 2.40E-53 | -1.69E-46 |
| MS.gene059223 | MS.gene34140 | 0.817021 | 4.09E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene34140 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene059953 | MS.gene34140 | 0.803032 | 4.23E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene34140 | 0.804283 | 2.33E-49 | -1.69E-46 |
| MS.gene060358 | MS.gene34140 | 0.806559 | 7.76E-50 | -1.69E-46 |
| MS.gene06077 | MS.gene34140 | -0.807503 | 4.90E-50 | -1.69E-46 |
| MS.gene061157 | MS.gene34140 | 0.875121 | 3.95E-68 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34140.t1 | MTR_1g100335 | 94.603 | 315 | 17 | 0 | 45 | 359 | 1 | 315 | 0.0 | 614 |
| MS.gene34140.t1 | MTR_1g100395 | 90.705 | 312 | 29 | 0 | 45 | 356 | 1 | 312 | 0.0 | 584 |
| MS.gene34140.t1 | MTR_1g100315 | 82.857 | 315 | 54 | 0 | 45 | 359 | 1 | 315 | 0.0 | 543 |
| MS.gene34140.t1 | MTR_1g100305 | 79.683 | 315 | 64 | 0 | 45 | 359 | 1 | 315 | 0.0 | 528 |
| MS.gene34140.t1 | MTR_1g100305 | 91.667 | 36 | 3 | 0 | 1 | 36 | 63 | 98 | 1.58e-12 | 67.8 |
| MS.gene34140.t1 | MTR_1g100335 | 95.122 | 246 | 12 | 0 | 45 | 290 | 1 | 246 | 2.80e-172 | 480 |
| MS.gene34140.t1 | MTR_1g100335 | 95.122 | 246 | 12 | 0 | 45 | 290 | 1 | 246 | 5.70e-172 | 479 |
| MS.gene34140.t1 | MTR_8g098415 | 68.571 | 315 | 99 | 0 | 45 | 359 | 1 | 315 | 6.04e-161 | 453 |
| MS.gene34140.t1 | MTR_8g098415 | 69.481 | 308 | 94 | 0 | 45 | 352 | 1 | 308 | 7.63e-160 | 450 |
| MS.gene34140.t1 | MTR_6g053550 | 71.104 | 308 | 84 | 3 | 54 | 357 | 18 | 324 | 7.35e-154 | 436 |
| MS.gene34140.t1 | MTR_1g068970 | 59.016 | 305 | 125 | 0 | 52 | 356 | 13 | 317 | 9.71e-129 | 372 |
| MS.gene34140.t1 | MTR_8g098415 | 67.829 | 258 | 83 | 0 | 102 | 359 | 1 | 258 | 3.05e-128 | 368 |
| MS.gene34140.t1 | MTR_7g099850 | 59.150 | 306 | 124 | 1 | 52 | 356 | 13 | 318 | 2.52e-127 | 368 |
| MS.gene34140.t1 | MTR_6g053600 | 69.466 | 262 | 77 | 2 | 54 | 312 | 4 | 265 | 9.26e-127 | 366 |
| MS.gene34140.t1 | MTR_8g098415 | 73.516 | 219 | 58 | 0 | 45 | 263 | 1 | 219 | 1.56e-114 | 332 |
| MS.gene34140.t1 | MTR_1g068970 | 56.048 | 248 | 109 | 0 | 109 | 356 | 3 | 250 | 1.36e-98 | 293 |
| MS.gene34140.t1 | MTR_3g077410 | 44.872 | 312 | 168 | 2 | 52 | 359 | 13 | 324 | 5.82e-87 | 266 |
| MS.gene34140.t1 | MTR_4g105310 | 44.551 | 312 | 169 | 2 | 52 | 359 | 24 | 335 | 6.25e-83 | 256 |
| MS.gene34140.t1 | MTR_8g099995 | 43.849 | 317 | 174 | 3 | 44 | 356 | 5 | 321 | 4.16e-81 | 251 |
| MS.gene34140.t1 | MTR_4g105310 | 47.325 | 243 | 124 | 2 | 52 | 290 | 24 | 266 | 1.88e-65 | 208 |
| MS.gene34140.t1 | MTR_6g081020 | 37.354 | 257 | 141 | 8 | 74 | 319 | 62 | 309 | 3.05e-30 | 119 |
| MS.gene34140.t1 | MTR_1g100345 | 66.216 | 74 | 25 | 0 | 77 | 150 | 4 | 77 | 6.04e-26 | 100 |
| MS.gene34140.t1 | MTR_1g100345 | 80.556 | 36 | 7 | 0 | 1 | 36 | 34 | 69 | 2.13e-11 | 60.1 |
| MS.gene34140.t1 | MTR_6g041980 | 29.811 | 265 | 166 | 7 | 69 | 329 | 62 | 310 | 2.65e-24 | 102 |
| MS.gene34140.t1 | MTR_2g079710 | 30.032 | 313 | 184 | 12 | 75 | 356 | 88 | 396 | 1.22e-21 | 95.5 |
| MS.gene34140.t1 | MTR_3g091070 | 28.947 | 304 | 164 | 13 | 76 | 356 | 43 | 317 | 2.02e-19 | 88.2 |
| MS.gene34140.t1 | MTR_6g041980 | 26.222 | 225 | 150 | 3 | 42 | 257 | 26 | 243 | 2.73e-18 | 84.0 |
| MS.gene34140.t1 | MTR_6g453040 | 28.525 | 305 | 182 | 11 | 76 | 356 | 43 | 335 | 1.02e-17 | 83.6 |
| MS.gene34140.t1 | MTR_3g009190 | 28.852 | 305 | 181 | 11 | 76 | 356 | 65 | 357 | 1.24e-17 | 83.6 |
| MS.gene34140.t1 | MTR_3g009190 | 28.852 | 305 | 181 | 11 | 76 | 356 | 83 | 375 | 1.68e-17 | 83.2 |
| MS.gene34140.t1 | MTR_3g009190 | 28.618 | 304 | 181 | 11 | 77 | 356 | 65 | 356 | 1.44e-15 | 77.4 |
| MS.gene34140.t1 | MTR_8g022500 | 38.739 | 111 | 41 | 3 | 81 | 190 | 434 | 518 | 1.68e-11 | 65.9 |
| MS.gene34140.t1 | MTR_7g076660 | 25.256 | 293 | 155 | 9 | 76 | 327 | 9 | 278 | 6.98e-11 | 62.8 |
| MS.gene34140.t1 | MTR_7g076660 | 25.256 | 293 | 155 | 9 | 76 | 327 | 10 | 279 | 7.72e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34140.t1 | AT4G23420 | 69.872 | 312 | 93 | 1 | 45 | 355 | 1 | 312 | 1.49e-162 | 457 |
| MS.gene34140.t1 | AT4G23420 | 69.872 | 312 | 93 | 1 | 45 | 355 | 1 | 312 | 1.49e-162 | 457 |
| MS.gene34140.t1 | AT4G23430 | 68.910 | 312 | 96 | 1 | 45 | 355 | 1 | 312 | 6.63e-162 | 456 |
| MS.gene34140.t1 | AT4G23420 | 67.284 | 324 | 99 | 2 | 39 | 355 | 6 | 329 | 2.49e-159 | 450 |
| MS.gene34140.t1 | AT4G11410 | 67.302 | 315 | 103 | 0 | 45 | 359 | 1 | 315 | 5.53e-159 | 448 |
| MS.gene34140.t1 | AT4G23430 | 68.269 | 312 | 96 | 2 | 45 | 355 | 1 | 310 | 1.56e-158 | 447 |
| MS.gene34140.t1 | AT4G23430 | 66.026 | 312 | 95 | 2 | 45 | 355 | 1 | 302 | 7.29e-152 | 430 |
| MS.gene34140.t1 | AT4G23430 | 65.385 | 312 | 95 | 3 | 45 | 355 | 1 | 300 | 2.34e-148 | 421 |
| MS.gene34140.t1 | AT4G23420 | 70.229 | 262 | 77 | 1 | 45 | 305 | 1 | 262 | 7.36e-135 | 385 |
| MS.gene34140.t1 | AT4G23420 | 75.105 | 237 | 59 | 0 | 45 | 281 | 1 | 237 | 4.92e-132 | 378 |
| MS.gene34140.t1 | AT2G37540 | 55.375 | 307 | 137 | 0 | 50 | 356 | 10 | 316 | 6.63e-124 | 359 |
| MS.gene34140.t1 | AT4G11410 | 69.796 | 245 | 74 | 0 | 45 | 289 | 1 | 245 | 2.02e-123 | 356 |
| MS.gene34140.t1 | AT5G02540 | 58.632 | 307 | 127 | 0 | 50 | 356 | 10 | 316 | 2.36e-123 | 358 |
| MS.gene34140.t1 | AT2G37540 | 59.072 | 237 | 97 | 0 | 50 | 286 | 10 | 246 | 4.00e-101 | 300 |
| MS.gene34140.t1 | AT4G24050 | 44.805 | 308 | 167 | 2 | 52 | 356 | 13 | 320 | 3.48e-84 | 259 |
| MS.gene34140.t1 | AT5G50130 | 46.624 | 311 | 162 | 3 | 52 | 358 | 13 | 323 | 1.80e-83 | 257 |
| MS.gene34140.t1 | AT5G50130 | 45.583 | 283 | 153 | 1 | 77 | 358 | 7 | 289 | 5.51e-76 | 237 |
| MS.gene34140.t1 | AT5G50130 | 45.775 | 284 | 152 | 2 | 77 | 358 | 7 | 290 | 1.62e-75 | 236 |
| MS.gene34140.t1 | AT1G64590 | 44.746 | 295 | 160 | 2 | 61 | 352 | 22 | 316 | 1.17e-72 | 229 |
| MS.gene34140.t1 | AT4G24050 | 45.076 | 264 | 140 | 3 | 52 | 312 | 13 | 274 | 1.20e-69 | 219 |
| MS.gene34140.t1 | AT5G50130 | 45.196 | 281 | 149 | 4 | 52 | 327 | 13 | 293 | 4.69e-69 | 219 |
| MS.gene34140.t1 | AT5G50130 | 45.390 | 282 | 148 | 5 | 52 | 327 | 13 | 294 | 1.33e-68 | 218 |
| MS.gene34140.t1 | AT5G50130 | 48.980 | 245 | 122 | 2 | 52 | 293 | 13 | 257 | 1.47e-68 | 216 |
| MS.gene34140.t1 | AT5G50130 | 49.187 | 246 | 121 | 3 | 52 | 293 | 13 | 258 | 4.23e-68 | 215 |
| MS.gene34140.t1 | AT5G50130 | 44.094 | 254 | 139 | 3 | 77 | 327 | 7 | 260 | 3.28e-61 | 198 |
| MS.gene34140.t1 | AT5G50130 | 44.314 | 255 | 138 | 4 | 77 | 327 | 7 | 261 | 1.20e-60 | 197 |
| MS.gene34140.t1 | AT4G27760 | 31.922 | 307 | 172 | 10 | 74 | 356 | 58 | 351 | 1.83e-31 | 122 |
| MS.gene34140.t1 | AT5G53090 | 31.894 | 301 | 180 | 6 | 74 | 356 | 57 | 350 | 3.69e-28 | 113 |
| MS.gene34140.t1 | AT5G53100 | 30.263 | 304 | 184 | 7 | 74 | 356 | 45 | 341 | 5.50e-26 | 107 |
| MS.gene34140.t1 | AT5G54190 | 29.904 | 311 | 183 | 12 | 77 | 356 | 96 | 402 | 3.03e-25 | 105 |
| MS.gene34140.t1 | AT1G03630 | 32.588 | 313 | 175 | 11 | 75 | 356 | 91 | 398 | 3.39e-25 | 105 |
| MS.gene34140.t1 | AT1G03630 | 32.588 | 313 | 175 | 11 | 75 | 356 | 89 | 396 | 3.73e-25 | 105 |
| MS.gene34140.t1 | AT4G09750 | 28.475 | 295 | 171 | 8 | 48 | 329 | 20 | 287 | 7.40e-25 | 103 |
| MS.gene34140.t1 | AT4G27440 | 30.547 | 311 | 181 | 12 | 77 | 356 | 92 | 398 | 4.11e-22 | 97.1 |
| MS.gene34140.t1 | AT4G27440 | 30.547 | 311 | 181 | 12 | 77 | 356 | 92 | 398 | 4.11e-22 | 97.1 |
| MS.gene34140.t1 | AT5G15940 | 28.947 | 304 | 186 | 11 | 76 | 358 | 62 | 356 | 3.91e-20 | 90.9 |
| MS.gene34140.t1 | AT5G15940 | 28.947 | 304 | 186 | 11 | 76 | 358 | 63 | 357 | 4.43e-20 | 90.5 |
| MS.gene34140.t1 | AT5G15940 | 28.947 | 304 | 186 | 11 | 76 | 358 | 63 | 357 | 4.43e-20 | 90.5 |
| MS.gene34140.t1 | AT5G04070 | 27.797 | 295 | 187 | 7 | 76 | 352 | 61 | 347 | 3.05e-18 | 85.5 |
| MS.gene34140.t1 | AT5G54190 | 27.368 | 285 | 173 | 11 | 102 | 356 | 1 | 281 | 3.05e-17 | 81.3 |
| MS.gene34140.t1 | AT5G15940 | 27.757 | 263 | 164 | 8 | 76 | 319 | 63 | 318 | 1.98e-14 | 73.6 |
| MS.gene34140.t1 | AT5G61830 | 23.529 | 289 | 169 | 8 | 76 | 329 | 39 | 310 | 1.15e-12 | 68.6 |
| MS.gene34140.t1 | AT5G61830 | 23.529 | 289 | 169 | 8 | 76 | 329 | 39 | 310 | 1.15e-12 | 68.6 |
Find 75 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCAAGAAAGGGGTTTC+TGG | 0.179687 | 1.2:-75098880 | MS.gene34140:CDS |
| ATGCAGTTCAATGTTGTCTT+TGG | 0.245720 | 1.2:+75097599 | None:intergenic |
| CTGATTTGGCTAAGAATCTA+TGG | 0.246758 | 1.2:-75096238 | MS.gene34140:CDS |
| TTTCAGCATGAATTTGATTA+AGG | 0.259296 | 1.2:-75096213 | MS.gene34140:CDS |
| CACCAATCTTTCCCGACATA+TGG | 0.300550 | 1.2:-75096891 | MS.gene34140:CDS |
| GCGTGGTGTCCATGTGATTA+TGG | 0.305515 | 1.2:-75098403 | MS.gene34140:CDS |
| GATTTGGTTATTACCTTGAT+TGG | 0.339925 | 1.2:+75097249 | None:intergenic |
| TTGTCAAAACGGATTCCTTC+AGG | 0.344301 | 1.2:+75097281 | None:intergenic |
| TTGTATACAGTTACAGCAAA+TGG | 0.345777 | 1.2:-75097116 | MS.gene34140:intron |
| CACTAACTCCCTTCACTTGT+GGG | 0.347652 | 1.2:+75096315 | None:intergenic |
| ACAGGGAAGGGACGCTGATT+TGG | 0.349751 | 1.2:-75096252 | MS.gene34140:CDS |
| AAAGGGGTTTCTGGATTCTC+AGG | 0.371144 | 1.2:-75098871 | MS.gene34140:CDS |
| GATTATGGCTGTTAGAAATA+AGG | 0.377539 | 1.2:-75098388 | MS.gene34140:CDS |
| GGAGTTAGATCTCAGTTCAT+TGG | 0.382633 | 1.2:-75098301 | MS.gene34140:CDS |
| ACAGGTATAATAAAGGTGAT+TGG | 0.391873 | 1.2:-75096557 | MS.gene34140:intron |
| GAGGCATCTTGCAAGTTCAT+TGG | 0.404865 | 1.2:+75097053 | None:intergenic |
| CCACTAACTCCCTTCACTTG+TGG | 0.412556 | 1.2:+75096314 | None:intergenic |
| CAGGTATAATAAAGGTGATT+GGG | 0.427139 | 1.2:-75096556 | MS.gene34140:CDS |
| TACAGCAAATGGGGTGCATA+TGG | 0.428773 | 1.2:-75097105 | MS.gene34140:CDS |
| GAATGGCCACATGATGATAA+TGG | 0.429571 | 1.2:+75098900 | None:intergenic |
| ACAGGAGCATCCAGTGGTAT+TGG | 0.435914 | 1.2:-75098453 | MS.gene34140:intron |
| TTACGCAACAGGTATAATAA+AGG | 0.438898 | 1.2:-75096564 | MS.gene34140:intron |
| TGTATACAGTTACAGCAAAT+GGG | 0.440853 | 1.2:-75097115 | MS.gene34140:intron |
| ACCCATATGTCGGGAAAGAT+TGG | 0.441432 | 1.2:+75096889 | None:intergenic |
| GGAGTTAGATCTCAGCTCAT+TGG | 0.445576 | 1.2:-75099276 | MS.gene34140:CDS |
| CCACAAGTGAAGGGAGTTAG+TGG | 0.447541 | 1.2:-75096314 | MS.gene34140:CDS |
| ACAAAATTAATGACCAATCA+AGG | 0.448930 | 1.2:-75097262 | MS.gene34140:intron |
| AAGACCAGTGGAATCAAATT+CGG | 0.464641 | 1.2:+75098257 | None:intergenic |
| TTACATCTTGATCAGGCTGA+TGG | 0.465863 | 1.2:-75096956 | MS.gene34140:intron |
| ATGTGGCCATTCAGCAAGAA+AGG | 0.469855 | 1.2:-75098889 | MS.gene34140:CDS |
| GAAACCCCTTTCTTGCTGAA+TGG | 0.470036 | 1.2:+75098883 | None:intergenic |
| TCTTACATCAAGATGTTCAA+TGG | 0.471739 | 1.2:+75098234 | None:intergenic |
| ACCAATCTTTCCCGACATAT+GGG | 0.476686 | 1.2:-75096890 | MS.gene34140:CDS |
| AGATTGGTGAGAATGATTCC+TGG | 0.477751 | 1.2:+75096905 | None:intergenic |
| CTCTGCTAAAATTGATGTCA+TGG | 0.483780 | 1.2:-75098322 | MS.gene34140:CDS |
| CTCTGCTAAACTTGATGCCA+TGG | 0.490137 | 1.2:-75099297 | MS.gene34140:CDS |
| TTGTCTTTGGACAGCATGAA+AGG | 0.496194 | 1.2:+75097612 | None:intergenic |
| GCATCCGAATTTGATTCCAC+TGG | 0.499929 | 1.2:-75098261 | MS.gene34140:CDS |
| GGCCTCACTGCTATTGTCAC+TGG | 0.501898 | 1.2:-75098805 | MS.gene34140:intron |
| TGTGGCCATTCAGCAAGAAA+GGG | 0.508330 | 1.2:-75098888 | MS.gene34140:CDS |
| TACATCTTGATCAGGCTGAT+GGG | 0.514593 | 1.2:-75096955 | MS.gene34140:intron |
| GCACATGAAAGTAAGAAAGA+AGG | 0.529008 | 1.2:-75097347 | MS.gene34140:CDS |
| GTCGAGTACACCCATATGTC+GGG | 0.534278 | 1.2:+75096880 | None:intergenic |
| TGATTTGGCTAAGAATCTAT+GGG | 0.536785 | 1.2:-75096237 | MS.gene34140:CDS |
| TTCAGGATATGCAAATATGT+AGG | 0.537061 | 1.2:+75097298 | None:intergenic |
| ATTGTGAATTCTCTTCATCC+AGG | 0.539076 | 1.2:-75096923 | MS.gene34140:CDS |
| AGCATTGCACCCACAAGTGA+AGG | 0.544451 | 1.2:-75096324 | MS.gene34140:CDS |
| ACTGCTGAACAAGTTACTCA+TGG | 0.551436 | 1.2:-75098841 | MS.gene34140:CDS |
| TGTCTTTGGACAGCATGAAA+GGG | 0.555783 | 1.2:+75097613 | None:intergenic |
| GTAATTGCAAGAAACAATGC+AGG | 0.558972 | 1.2:-75097648 | MS.gene34140:intron |
| CAATGCTGCATAGCATGTTG+TGG | 0.559508 | 1.2:+75096340 | None:intergenic |
| GGTCTCAACTCCAATACCAC+TGG | 0.561925 | 1.2:+75098443 | None:intergenic |
| TCTTGATCAGGCTGATGGGG+TGG | 0.576337 | 1.2:-75096951 | MS.gene34140:intron |
| TGTCAAAGAAACAATACTCA+AGG | 0.582192 | 1.2:-75099327 | MS.gene34140:CDS |
| TACATATTTGCATATCCTGA+AGG | 0.585299 | 1.2:-75097296 | MS.gene34140:CDS |
| AAGGGGTTTCTGGATTCTCA+GGG | 0.585889 | 1.2:-75098870 | MS.gene34140:CDS |
| CGACATATGGGTGTACTCGA+CGG | 0.590202 | 1.2:-75096878 | MS.gene34140:intron |
| ACATCTTGATCAGGCTGATG+GGG | 0.610650 | 1.2:-75096954 | MS.gene34140:intron |
| TGAACTTGCAAGATGCCTCA+AGG | 0.616025 | 1.2:-75097049 | MS.gene34140:intron |
| GAGTTTCCATTATCATCATG+TGG | 0.618765 | 1.2:-75098906 | MS.gene34140:CDS |
| GCATTGCACCCACAAGTGAA+GGG | 0.619968 | 1.2:-75096323 | MS.gene34140:CDS |
| CGTCGAGTACACCCATATGT+CGG | 0.621129 | 1.2:+75096879 | None:intergenic |
| TTCTAACAGCCATAATCACA+TGG | 0.621462 | 1.2:+75098394 | None:intergenic |
| GTGGCCATTCAGCAAGAAAG+GGG | 0.627372 | 1.2:-75098887 | MS.gene34140:CDS |
| GATGTTCAATGGAAGACCAG+TGG | 0.631573 | 1.2:+75098245 | None:intergenic |
| ACGCGTGTTCTTGCTTTGCG+TGG | 0.635276 | 1.2:-75098420 | MS.gene34140:CDS |
| ACTCATGGAATTGATGCAAG+TGG | 0.647904 | 1.2:-75098826 | MS.gene34140:CDS |
| TGAGCTGAGATCTAACTCCA+TGG | 0.649334 | 1.2:+75099280 | None:intergenic |
| ATGGCATCAAGTTTAGCAGA+GGG | 0.654356 | 1.2:+75099299 | None:intergenic |
| GTATACAGTTACAGCAAATG+GGG | 0.659776 | 1.2:-75097114 | MS.gene34140:intron |
| CATGGCATCAAGTTTAGCAG+AGG | 0.683203 | 1.2:+75099298 | None:intergenic |
| ATGGTAACAGGAGCATCCAG+TGG | 0.683391 | 1.2:-75098459 | MS.gene34140:intron |
| ATATTTCCCACATACCTAGG+TGG | 0.684024 | 1.2:+75097565 | None:intergenic |
| ACGCAAAGCAAGAACACGCG+TGG | 0.690438 | 1.2:+75098422 | None:intergenic |
| GACCAGTGACAATAGCAGTG+AGG | 0.746778 | 1.2:+75098803 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATAACTTAATTATAT+AGG | + | chr1.2:75098033-75098052 | None:intergenic | 10.0% |
| !! | CAAAATAAATAGTAAATAAA+AGG | + | chr1.2:75097790-75097809 | None:intergenic | 10.0% |
| !! | AAAAACTACTATTTAACAAA+GGG | + | chr1.2:75096826-75096845 | None:intergenic | 15.0% |
| !! | AAATTATTATATGGATATGA+TGG | - | chr1.2:75097066-75097085 | MS.gene34140:CDS | 15.0% |
| !! | GAAACTTTAAATTAAGTTAA+AGG | - | chr1.2:75097747-75097766 | MS.gene34140:intron | 15.0% |
| !! | TAAAAACTACTATTTAACAA+AGG | + | chr1.2:75096827-75096846 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATGATTTACGT+TGG | + | chr1.2:75096520-75096539 | None:intergenic | 15.0% |
| !!! | TTATTTTGATGATTTGTATA+AGG | - | chr1.2:75096324-75096343 | MS.gene34140:CDS | 15.0% |
| !! | AAAACTTTAGATTAAGTTAG+AGG | + | chr1.2:75097399-75097418 | None:intergenic | 20.0% |
| !! | AACATACTTACATAATAACA+TGG | - | chr1.2:75096418-75096437 | MS.gene34140:intron | 20.0% |
| !! | TAACAACTTCAATAAAAATC+AGG | + | chr1.2:75097816-75097835 | None:intergenic | 20.0% |
| !! | TATCATTCATCTACATTTAT+AGG | - | chr1.2:75098840-75098859 | MS.gene34140:CDS | 20.0% |
| !! | TCATTGAACAATATATGATA+AGG | + | chr1.2:75097620-75097639 | None:intergenic | 20.0% |
| !!! | TAGAAAACAAACACATTTTA+TGG | + | chr1.2:75098911-75098930 | None:intergenic | 20.0% |
| !!! | TTTTATGTTGCAGAATTATT+TGG | - | chr1.2:75096842-75096861 | MS.gene34140:intron | 20.0% |
| !!! | TTTTTTTTCTGCATTATCTA+CGG | - | chr1.2:75098776-75098795 | MS.gene34140:intron | 20.0% |
| ! | AATCAGTTCAAATAAATGTG+AGG | - | chr1.2:75099052-75099071 | MS.gene34140:intron | 25.0% |
| ! | ACAAAATTAATGACCAATCA+AGG | - | chr1.2:75098287-75098306 | MS.gene34140:CDS | 25.0% |
| ! | AGGATCAGTTCAAATAAAAT+TGG | - | chr1.2:75099072-75099091 | MS.gene34140:intron | 25.0% |
| ! | ATTATATGGATATGATGGTA+TGG | - | chr1.2:75097071-75097090 | MS.gene34140:CDS | 25.0% |
| ! | GGCTACGATAAATTATTATA+TGG | - | chr1.2:75097057-75097076 | MS.gene34140:CDS | 25.0% |
| ! | GTTTACAGAAAAACTCTTTA+TGG | - | chr1.2:75097491-75097510 | MS.gene34140:intron | 25.0% |
| ! | TGTAAATTATGTAATTGTGC+AGG | - | chr1.2:75098133-75098152 | MS.gene34140:intron | 25.0% |
| ! | TTACATAAAATTCTTGCAAC+TGG | - | chr1.2:75097036-75097055 | MS.gene34140:intron | 25.0% |
| ! | TTCTTTAAATGCTTAAACTG+TGG | - | chr1.2:75098083-75098102 | MS.gene34140:intron | 25.0% |
| ! | TTGAACGCTGTAAATATAAA+GGG | - | chr1.2:75097687-75097706 | MS.gene34140:intron | 25.0% |
| ! | TTTCAGCATGAATTTGATTA+AGG | - | chr1.2:75099336-75099355 | MS.gene34140:CDS | 25.0% |
| ! | TTTGAACTTATGTTACCTAT+TGG | + | chr1.2:75098325-75098344 | None:intergenic | 25.0% |
| !! | GGTCATTAATTTTGTCAAAA+CGG | + | chr1.2:75098282-75098301 | None:intergenic | 25.0% |
| !!! | ATATTTTTCAGACAGTAATG+TGG | - | chr1.2:75099261-75099280 | MS.gene34140:CDS | 25.0% |
| !!! | TTTACGTTGGTTTGATTTTT+TGG | + | chr1.2:75096507-75096526 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTGTGTAAAAC+TGG | - | chr1.2:75098537-75098556 | MS.gene34140:intron | 25.0% |
| ACAGGTATAATAAAGGTGAT+TGG | - | chr1.2:75098992-75099011 | MS.gene34140:intron | 30.0% | |
| ACTTTCTCCTATCTAAATGT+AGG | - | chr1.2:75099180-75099199 | MS.gene34140:intron | 30.0% | |
| AGGTAATAACCAAATCCAAT+AGG | - | chr1.2:75098307-75098326 | MS.gene34140:CDS | 30.0% | |
| ATAAAAGGAAAATCTGCACA+TGG | + | chr1.2:75097775-75097794 | None:intergenic | 30.0% | |
| ATGAAGAATTAAGAGTGGAA+AGG | - | chr1.2:75098390-75098409 | MS.gene34140:CDS | 30.0% | |
| ATTGACATTGTGAATTGTGA+CGG | - | chr1.2:75096614-75096633 | MS.gene34140:intron | 30.0% | |
| ATTTGAATGATGACATCAGT+GGG | - | chr1.2:75096452-75096471 | MS.gene34140:intron | 30.0% | |
| CAGGTATAATAAAGGTGATT+GGG | - | chr1.2:75098993-75099012 | MS.gene34140:intron | 30.0% | |
| CATGATCAAGAAAGATAAAC+TGG | + | chr1.2:75097874-75097893 | None:intergenic | 30.0% | |
| CTTAATTCTTCATGCAACTA+AGG | + | chr1.2:75098383-75098402 | None:intergenic | 30.0% | |
| CTTATGTTACCTATTGGATT+TGG | + | chr1.2:75098319-75098338 | None:intergenic | 30.0% | |
| CTTTCTCCTATCTAAATGTA+GGG | - | chr1.2:75099181-75099200 | MS.gene34140:intron | 30.0% | |
| GAACATCTTGATGTAAGAAA+AGG | - | chr1.2:75097320-75097339 | MS.gene34140:CDS | 30.0% | |
| GATTATGGCTGTTAGAAATA+AGG | - | chr1.2:75097161-75097180 | MS.gene34140:intron | 30.0% | |
| GTTGAACGCTGTAAATATAA+AGG | - | chr1.2:75097686-75097705 | MS.gene34140:intron | 30.0% | |
| TAAAAGGAAAATCTGCACAT+GGG | + | chr1.2:75097774-75097793 | None:intergenic | 30.0% | |
| TACATATTTGCATATCCTGA+AGG | - | chr1.2:75098253-75098272 | MS.gene34140:CDS | 30.0% | |
| TAGAAATTATTAAAGCCCTG+TGG | - | chr1.2:75098736-75098755 | MS.gene34140:intron | 30.0% | |
| TATTTGAATGATGACATCAG+TGG | - | chr1.2:75096451-75096470 | MS.gene34140:intron | 30.0% | |
| TCTTACATCAAGATGTTCAA+TGG | + | chr1.2:75097318-75097337 | None:intergenic | 30.0% | |
| TGTATACAGTTACAGCAAAT+GGG | - | chr1.2:75098434-75098453 | MS.gene34140:CDS | 30.0% | |
| TGTCAAAGAAACAATACTCA+AGG | - | chr1.2:75096222-75096241 | MS.gene34140:CDS | 30.0% | |
| TTACGCAACAGGTATAATAA+AGG | - | chr1.2:75098985-75099004 | MS.gene34140:intron | 30.0% | |
| TTCAGGATATGCAAATATGT+AGG | + | chr1.2:75098254-75098273 | None:intergenic | 30.0% | |
| TTGTATACAGTTACAGCAAA+TGG | - | chr1.2:75098433-75098452 | MS.gene34140:CDS | 30.0% | |
| TTTCTCCTATCTAAATGTAG+GGG | - | chr1.2:75099182-75099201 | MS.gene34140:intron | 30.0% | |
| ! | ATGACAGTATCTGAGTTTTA+TGG | - | chr1.2:75098941-75098960 | MS.gene34140:intron | 30.0% |
| ! | CAGTTTTGCCTAAACAAAAA+TGG | + | chr1.2:75097366-75097385 | None:intergenic | 30.0% |
| ! | GATTTGGTTATTACCTTGAT+TGG | + | chr1.2:75098303-75098322 | None:intergenic | 30.0% |
| ! | TCTCTTGACAAATCTTTTGT+TGG | - | chr1.2:75098162-75098181 | MS.gene34140:intron | 30.0% |
| ! | TGATTTGGCTAAGAATCTAT+GGG | - | chr1.2:75099312-75099331 | MS.gene34140:CDS | 30.0% |
| ! | TTATGTTTGATTTACGCAAC+AGG | - | chr1.2:75098974-75098993 | MS.gene34140:intron | 30.0% |
| !! | ATGACATCAATTTTAGCAGA+GGG | + | chr1.2:75097228-75097247 | None:intergenic | 30.0% |
| !! | ATTTGCTGTAACTGTATACA+AGG | + | chr1.2:75098434-75098453 | None:intergenic | 30.0% |
| !!! | GGGAAATATGTTTGGTTTTA+AGG | - | chr1.2:75097998-75098017 | MS.gene34140:intron | 30.0% |
| AAAAACAAGATCACAGGGAA+GGG | - | chr1.2:75099285-75099304 | MS.gene34140:CDS | 35.0% | |
| AACATATTTCCCACATACCT+AGG | + | chr1.2:75097990-75098009 | None:intergenic | 35.0% | |
| AAGAATTAAGAGTGGAAAGG+TGG | - | chr1.2:75098393-75098412 | MS.gene34140:CDS | 35.0% | |
| AAGACCAGTGGAATCAAATT+CGG | + | chr1.2:75097295-75097314 | None:intergenic | 35.0% | |
| AATAACCAGCAGAAACATCA+TGG | + | chr1.2:75096357-75096376 | None:intergenic | 35.0% | |
| AGGTATGTGGGAAATATGTT+TGG | - | chr1.2:75097990-75098009 | MS.gene34140:intron | 35.0% | |
| ATGCAGTTCAATGTTGTCTT+TGG | + | chr1.2:75097953-75097972 | None:intergenic | 35.0% | |
| ATTGTGAATTCTCTTCATCC+AGG | - | chr1.2:75098626-75098645 | MS.gene34140:intron | 35.0% | |
| CTCTGCTAAAATTGATGTCA+TGG | - | chr1.2:75097227-75097246 | MS.gene34140:intron | 35.0% | |
| CTGTAACTGTATACAAGGAA+GGG | + | chr1.2:75098429-75098448 | None:intergenic | 35.0% | |
| GAGTTTCCATTATCATCATG+TGG | - | chr1.2:75096643-75096662 | MS.gene34140:intron | 35.0% | |
| GCACATGAAAGTAAGAAAGA+AGG | - | chr1.2:75098202-75098221 | MS.gene34140:intron | 35.0% | |
| GCCTAAACAAAAATGGTTCT+GGG | + | chr1.2:75097359-75097378 | None:intergenic | 35.0% | |
| GTAAGTATGTTGAAGATGTG+TGG | + | chr1.2:75096409-75096428 | None:intergenic | 35.0% | |
| GTAATTGCAAGAAACAATGC+AGG | - | chr1.2:75097901-75097920 | MS.gene34140:intron | 35.0% | |
| GTATACAGTTACAGCAAATG+GGG | - | chr1.2:75098435-75098454 | MS.gene34140:CDS | 35.0% | |
| GTTGCATGAAGAATTAAGAG+TGG | - | chr1.2:75098385-75098404 | MS.gene34140:CDS | 35.0% | |
| TATAAAGGGCTAACTTGACA+CGG | - | chr1.2:75097701-75097720 | MS.gene34140:intron | 35.0% | |
| TGCCTAAACAAAAATGGTTC+TGG | + | chr1.2:75097360-75097379 | None:intergenic | 35.0% | |
| TGTAAGAAAAGGAACTGACT+TGG | - | chr1.2:75097331-75097350 | MS.gene34140:CDS | 35.0% | |
| TGTGATGAAAAATGTTCAGC+AGG | - | chr1.2:75099021-75099040 | MS.gene34140:intron | 35.0% | |
| TTCTAACAGCCATAATCACA+TGG | + | chr1.2:75097158-75097177 | None:intergenic | 35.0% | |
| TTCTCCTATCTAAATGTAGG+GGG | - | chr1.2:75099183-75099202 | MS.gene34140:intron | 35.0% | |
| ! | CTTTTGTGGTCAATTTCTGT+GGG | + | chr1.2:75097522-75097541 | None:intergenic | 35.0% |
| ! | TCACTTGTTACATCTTGATC+AGG | - | chr1.2:75098586-75098605 | MS.gene34140:intron | 35.0% |
| ! | TCTCAGATTCGAATCTTTTG+TGG | + | chr1.2:75097536-75097555 | None:intergenic | 35.0% |
| ! | TCTTTTGTGGTCAATTTCTG+TGG | + | chr1.2:75097523-75097542 | None:intergenic | 35.0% |
| ! | TGCAAATATGTAGGCTTTTG+CGG | + | chr1.2:75098245-75098264 | None:intergenic | 35.0% |
| !! | CATGACATCAATTTTAGCAG+AGG | + | chr1.2:75097229-75097248 | None:intergenic | 35.0% |
| !! | CTGATTTGGCTAAGAATCTA+TGG | - | chr1.2:75099311-75099330 | MS.gene34140:CDS | 35.0% |
| !! | TCCCAGAACCATTTTTGTTT+AGG | - | chr1.2:75097355-75097374 | MS.gene34140:CDS | 35.0% |
| AACAAACCACCTAGGTATGT+GGG | - | chr1.2:75097978-75097997 | MS.gene34140:intron | 40.0% | |
| AACTGGAACACAGATACTCA+TGG | + | chr1.2:75097857-75097876 | None:intergenic | 40.0% | |
| AATGATGACATCAGTGGGAT+TGG | - | chr1.2:75096457-75096476 | MS.gene34140:intron | 40.0% | |
| ACCAATCTTTCCCGACATAT+GGG | - | chr1.2:75098659-75098678 | MS.gene34140:intron | 40.0% | |
| ACTCATGGAATTGATGCAAG+TGG | - | chr1.2:75096723-75096742 | MS.gene34140:intron | 40.0% | |
| ACTGCTGAACAAGTTACTCA+TGG | - | chr1.2:75096708-75096727 | MS.gene34140:intron | 40.0% | |
| AGATTGGTGAGAATGATTCC+TGG | + | chr1.2:75098647-75098666 | None:intergenic | 40.0% | |
| ATAAAGGGCTAACTTGACAC+GGG | - | chr1.2:75097702-75097721 | MS.gene34140:intron | 40.0% | |
| ATATTTCCCACATACCTAGG+TGG | + | chr1.2:75097987-75098006 | None:intergenic | 40.0% | |
| ATGGCATCAAGTTTAGCAGA+GGG | + | chr1.2:75096253-75096272 | None:intergenic | 40.0% | |
| ATTATTAAAGCCCTGTGGCA+TGG | - | chr1.2:75098741-75098760 | MS.gene34140:intron | 40.0% | |
| CAAAAACAAGATCACAGGGA+AGG | - | chr1.2:75099284-75099303 | MS.gene34140:CDS | 40.0% | |
| CAATAGTGCAGATCATGCTT+TGG | + | chr1.2:75096598-75096617 | None:intergenic | 40.0% | |
| CTGCTGAAATTTGCATAGTC+AGG | - | chr1.2:75096984-75097003 | MS.gene34140:intron | 40.0% | |
| GAATGGCCACATGATGATAA+TGG | + | chr1.2:75096652-75096671 | None:intergenic | 40.0% | |
| GCTGTAACTGTATACAAGGA+AGG | + | chr1.2:75098430-75098449 | None:intergenic | 40.0% | |
| GGAGTTAGATCTCAGTTCAT+TGG | - | chr1.2:75097248-75097267 | MS.gene34140:intron | 40.0% | |
| GGATATGATGGTATGGTAAC+AGG | - | chr1.2:75097078-75097097 | MS.gene34140:CDS | 40.0% | |
| GTGGCAAAAACAAGATCACA+GGG | - | chr1.2:75099280-75099299 | MS.gene34140:CDS | 40.0% | |
| TACATCTTGATCAGGCTGAT+GGG | - | chr1.2:75098594-75098613 | MS.gene34140:intron | 40.0% | |
| TGTCTTTGGACAGCATGAAA+GGG | + | chr1.2:75097939-75097958 | None:intergenic | 40.0% | |
| TGTGGCAAAAACAAGATCAC+AGG | - | chr1.2:75099279-75099298 | MS.gene34140:CDS | 40.0% | |
| TGTTTAGGCAAAACTGCACT+AGG | - | chr1.2:75097370-75097389 | MS.gene34140:CDS | 40.0% | |
| TTACATCTTGATCAGGCTGA+TGG | - | chr1.2:75098593-75098612 | MS.gene34140:intron | 40.0% | |
| TTGTCTTTGGACAGCATGAA+AGG | + | chr1.2:75097940-75097959 | None:intergenic | 40.0% | |
| ! | ATTTAGAATGCCATGCCACA+GGG | + | chr1.2:75098754-75098773 | None:intergenic | 40.0% |
| ! | CATTTTGCAACAAACCACCT+AGG | - | chr1.2:75097970-75097989 | MS.gene34140:intron | 40.0% |
| ! | GCACTATCGTGGATTTTACA+AGG | - | chr1.2:75098809-75098828 | MS.gene34140:CDS | 40.0% |
| ! | TCATGACAAGATGTGCTGTT+AGG | - | chr1.2:75098345-75098364 | MS.gene34140:CDS | 40.0% |
| ! | TTGAACCATGATGTTTCTGC+TGG | - | chr1.2:75096349-75096368 | MS.gene34140:CDS | 40.0% |
| ! | TTGTCAAAACGGATTCCTTC+AGG | + | chr1.2:75098271-75098290 | None:intergenic | 40.0% |
| ACATCTTGATCAGGCTGATG+GGG | - | chr1.2:75098595-75098614 | MS.gene34140:intron | 45.0% | |
| ACCCATATGTCGGGAAAGAT+TGG | + | chr1.2:75098663-75098682 | None:intergenic | 45.0% | |
| AGAGAAACTAGCACACCTTG+AGG | + | chr1.2:75098518-75098537 | None:intergenic | 45.0% | |
| ATGTGGCCATTCAGCAAGAA+AGG | - | chr1.2:75096660-75096679 | MS.gene34140:intron | 45.0% | |
| CAACAAACCACCTAGGTATG+TGG | - | chr1.2:75097977-75097996 | MS.gene34140:intron | 45.0% | |
| CAATGCTGCATAGCATGTTG+TGG | + | chr1.2:75099212-75099231 | None:intergenic | 45.0% | |
| CACCAATCTTTCCCGACATA+TGG | - | chr1.2:75098658-75098677 | MS.gene34140:intron | 45.0% | |
| CACTAACTCCCTTCACTTGT+GGG | + | chr1.2:75099237-75099256 | None:intergenic | 45.0% | |
| CATGGCATCAAGTTTAGCAG+AGG | + | chr1.2:75096254-75096273 | None:intergenic | 45.0% | |
| CTCTGCTAAACTTGATGCCA+TGG | - | chr1.2:75096252-75096271 | MS.gene34140:CDS | 45.0% | |
| GAAACCCCTTTCTTGCTGAA+TGG | + | chr1.2:75096669-75096688 | None:intergenic | 45.0% | |
| GATGTTCAATGGAAGACCAG+TGG | + | chr1.2:75097307-75097326 | None:intergenic | 45.0% | |
| GCATCCGAATTTGATTCCAC+TGG | - | chr1.2:75097288-75097307 | MS.gene34140:CDS | 45.0% | |
| GGAGTTAGATCTCAGCTCAT+TGG | - | chr1.2:75096273-75096292 | MS.gene34140:CDS | 45.0% | |
| GTTGTTGTGTAGCACTATCG+TGG | - | chr1.2:75098798-75098817 | MS.gene34140:intron | 45.0% | |
| TAAAGGGCTAACTTGACACG+GGG | - | chr1.2:75097703-75097722 | MS.gene34140:intron | 45.0% | |
| TAACCACTAGGAAAACCGCT+GGG | - | chr1.2:75097589-75097608 | MS.gene34140:CDS | 45.0% | |
| TACAGCAAATGGGGTGCATA+TGG | - | chr1.2:75098444-75098463 | MS.gene34140:CDS | 45.0% | |
| TATGATAAGGAAACCCCCAG+CGG | + | chr1.2:75097607-75097626 | None:intergenic | 45.0% | |
| TGAACTTGCAAGATGCCTCA+AGG | - | chr1.2:75098500-75098519 | MS.gene34140:intron | 45.0% | |
| TGAGCTGAGATCTAACTCCA+TGG | + | chr1.2:75096272-75096291 | None:intergenic | 45.0% | |
| TGTGGCCATTCAGCAAGAAA+GGG | - | chr1.2:75096661-75096680 | MS.gene34140:intron | 45.0% | |
| TTCAGCAAGAAAGGGGTTTC+TGG | - | chr1.2:75096669-75096688 | MS.gene34140:intron | 45.0% | |
| ! | AAAGGGGTTTCTGGATTCTC+AGG | - | chr1.2:75096678-75096697 | MS.gene34140:intron | 45.0% |
| ! | AAGGGGTTTCTGGATTCTCA+GGG | - | chr1.2:75096679-75096698 | MS.gene34140:intron | 45.0% |
| ! | CATTTAGAATGCCATGCCAC+AGG | + | chr1.2:75098755-75098774 | None:intergenic | 45.0% |
| ! | GAGGCATCTTGCAAGTTCAT+TGG | + | chr1.2:75098499-75098518 | None:intergenic | 45.0% |
| !!! | AAAATGAAATTTTTTAAAAA+TGG | + | chr1.2:75096794-75096813 | None:intergenic | 5.0% |
| AACCACTAGGAAAACCGCTG+GGG | - | chr1.2:75097590-75097609 | MS.gene34140:CDS | 50.0% | |
| AGCATTGCACCCACAAGTGA+AGG | - | chr1.2:75099225-75099244 | MS.gene34140:intron | 50.0% | |
| AGGTCTCAAGCCTAACCACT+AGG | - | chr1.2:75097577-75097596 | MS.gene34140:intron | 50.0% | |
| CCACAAGTGAAGGGAGTTAG+TGG | - | chr1.2:75099235-75099254 | MS.gene34140:intron | 50.0% | |
| CCACTAACTCCCTTCACTTG+TGG | + | chr1.2:75099238-75099257 | None:intergenic | 50.0% | |
| CGACATATGGGTGTACTCGA+CGG | - | chr1.2:75098671-75098690 | MS.gene34140:intron | 50.0% | |
| CGTCGAGTACACCCATATGT+CGG | + | chr1.2:75098673-75098692 | None:intergenic | 50.0% | |
| CTAACCACTAGGAAAACCGC+TGG | - | chr1.2:75097588-75097607 | MS.gene34140:CDS | 50.0% | |
| CTTCGAGTGTGCTCTTCTCA+AGG | + | chr1.2:75097559-75097578 | None:intergenic | 50.0% | |
| GACCAGTGACAATAGCAGTG+AGG | + | chr1.2:75096749-75096768 | None:intergenic | 50.0% | |
| GCATTGCACCCACAAGTGAA+GGG | - | chr1.2:75099226-75099245 | MS.gene34140:intron | 50.0% | |
| GCGTGGTGTCCATGTGATTA+TGG | - | chr1.2:75097146-75097165 | MS.gene34140:intron | 50.0% | |
| GCTGCCCCCTACATTTAGAT+AGG | + | chr1.2:75099190-75099209 | None:intergenic | 50.0% | |
| GGTCTCAACTCCAATACCAC+TGG | + | chr1.2:75097109-75097128 | None:intergenic | 50.0% | |
| GTCGAGTACACCCATATGTC+GGG | + | chr1.2:75098672-75098691 | None:intergenic | 50.0% | |
| GTGGCCATTCAGCAAGAAAG+GGG | - | chr1.2:75096662-75096681 | MS.gene34140:intron | 50.0% | |
| ! | CAGCGGTTTTCCTAGTGGTT+AGG | + | chr1.2:75097590-75097609 | None:intergenic | 50.0% |
| ! | CTTGAGAAGAGCACACTCGA+AGG | - | chr1.2:75097557-75097576 | MS.gene34140:intron | 50.0% |
| !! | ACAGGAGCATCCAGTGGTAT+TGG | - | chr1.2:75097096-75097115 | MS.gene34140:CDS | 50.0% |
| !! | ATGGTAACAGGAGCATCCAG+TGG | - | chr1.2:75097090-75097109 | MS.gene34140:CDS | 50.0% |
| ACCACTAGGAAAACCGCTGG+GGG | - | chr1.2:75097591-75097610 | MS.gene34140:CDS | 55.0% | |
| ACGCAAAGCAAGAACACGCG+TGG | + | chr1.2:75097130-75097149 | None:intergenic | 55.0% | |
| ACGCGTGTTCTTGCTTTGCG+TGG | - | chr1.2:75097129-75097148 | MS.gene34140:intron | 55.0% | |
| GGCCTCACTGCTATTGTCAC+TGG | - | chr1.2:75096744-75096763 | MS.gene34140:intron | 55.0% | |
| TCTTGATCAGGCTGATGGGG+TGG | - | chr1.2:75098598-75098617 | MS.gene34140:intron | 55.0% | |
| ! | ACAGGGAAGGGACGCTGATT+TGG | - | chr1.2:75099297-75099316 | MS.gene34140:CDS | 55.0% |
| ! | ACCCCCAGCGGTTTTCCTAG+TGG | + | chr1.2:75097595-75097614 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 75096205 | 75099366 | 75096205 | ID=MS.gene34140 |
| chr1.2 | mRNA | 75096205 | 75099366 | 75096205 | ID=MS.gene34140.t1;Parent=MS.gene34140 |
| chr1.2 | exon | 75099253 | 75099366 | 75099253 | ID=MS.gene34140.t1.exon1;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75099253 | 75099366 | 75099253 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75098806 | 75098929 | 75098806 | ID=MS.gene34140.t1.exon2;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75098806 | 75098929 | 75098806 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75098240 | 75098471 | 75098240 | ID=MS.gene34140.t1.exon3;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75098240 | 75098471 | 75098240 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75097580 | 75097659 | 75097580 | ID=MS.gene34140.t1.exon4;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75097580 | 75097659 | 75097580 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75097263 | 75097416 | 75097263 | ID=MS.gene34140.t1.exon5;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75097263 | 75097416 | 75097263 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75097050 | 75097128 | 75097050 | ID=MS.gene34140.t1.exon6;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75097050 | 75097128 | 75097050 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75096879 | 75096963 | 75096879 | ID=MS.gene34140.t1.exon7;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75096879 | 75096963 | 75096879 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75096529 | 75096575 | 75096529 | ID=MS.gene34140.t1.exon8;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75096529 | 75096575 | 75096529 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| chr1.2 | exon | 75096205 | 75096369 | 75096205 | ID=MS.gene34140.t1.exon9;Parent=MS.gene34140.t1 |
| chr1.2 | CDS | 75096205 | 75096369 | 75096205 | ID=cds.MS.gene34140.t1;Parent=MS.gene34140.t1 |
| Gene Sequence |
| Protein sequence |