Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061157.t1 | XP_013469646.1 | 95.2 | 315 | 15 | 0 | 1 | 315 | 1 | 315 | 3.90E-164 | 587.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061157.t1 | Q6RVV4 | 79.4 | 316 | 64 | 1 | 1 | 315 | 1 | 316 | 1.5e-140 | 500.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061157.t1 | A0A072VNT5 | 95.2 | 315 | 15 | 0 | 1 | 315 | 1 | 315 | 2.8e-164 | 587.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051127 | MS.gene061157 | 0.825761 | 3.93E-54 | -1.69E-46 |
| MS.gene056748 | MS.gene061157 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene057550 | MS.gene061157 | 0.819126 | 1.37E-52 | -1.69E-46 |
| MS.gene061157 | MS.gene069874 | 0.804164 | 2.46E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene073034 | 0.808466 | 3.05E-50 | -1.69E-46 |
| MS.gene061157 | MS.gene073035 | 0.816485 | 5.40E-52 | -1.69E-46 |
| MS.gene061157 | MS.gene21868 | 0.803024 | 4.25E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene21870 | 0.800473 | 1.42E-48 | -1.69E-46 |
| MS.gene061157 | MS.gene23573 | 0.80775 | 4.34E-50 | -1.69E-46 |
| MS.gene061157 | MS.gene25125 | 0.804519 | 2.08E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene26402 | 0.812266 | 4.62E-51 | -1.69E-46 |
| MS.gene061157 | MS.gene30394 | 0.822601 | 2.17E-53 | -1.69E-46 |
| MS.gene061157 | MS.gene31542 | 0.818984 | 1.47E-52 | -1.69E-46 |
| MS.gene061157 | MS.gene33445 | 0.839527 | 1.50E-57 | -1.69E-46 |
| MS.gene061157 | MS.gene34140 | 0.875121 | 3.95E-68 | -1.69E-46 |
| MS.gene061157 | MS.gene35741 | 0.805489 | 1.30E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene40363 | 0.800417 | 1.46E-48 | -1.69E-46 |
| MS.gene061157 | MS.gene40364 | 0.812922 | 3.32E-51 | -1.69E-46 |
| MS.gene061157 | MS.gene40552 | 0.81683 | 4.52E-52 | -1.69E-46 |
| MS.gene061157 | MS.gene45223 | 0.824111 | 9.63E-54 | -1.69E-46 |
| MS.gene061157 | MS.gene51735 | 0.822626 | 2.14E-53 | -1.69E-46 |
| MS.gene061157 | MS.gene51742 | 0.812313 | 4.52E-51 | -1.69E-46 |
| MS.gene061157 | MS.gene52024 | 0.800533 | 1.38E-48 | -1.69E-46 |
| MS.gene061157 | MS.gene53442 | 0.805628 | 1.22E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene56375 | 0.805687 | 1.18E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene56384 | 0.809414 | 1.92E-50 | -1.69E-46 |
| MS.gene061157 | MS.gene57718 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene65040 | 0.804287 | 2.32E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene69635 | 0.804158 | 2.47E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene75760 | 0.80573 | 1.16E-49 | -1.69E-46 |
| MS.gene061157 | MS.gene76539 | 0.807922 | 3.99E-50 | -1.69E-46 |
| MS.gene061157 | MS.gene76570 | 0.800583 | 1.35E-48 | -1.69E-46 |
| MS.gene061157 | MS.gene96948 | 0.82173 | 3.46E-53 | -1.69E-46 |
| MS.gene061157 | MS.gene97125 | 0.806411 | 8.33E-50 | -1.69E-46 |
| MS.gene061157 | MS.gene97602 | 0.819077 | 1.40E-52 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061157.t1 | MTR_1g100335 | 95.238 | 315 | 15 | 0 | 1 | 315 | 1 | 315 | 0.0 | 616 |
| MS.gene061157.t1 | MTR_1g100395 | 90.705 | 312 | 29 | 0 | 1 | 312 | 1 | 312 | 0.0 | 582 |
| MS.gene061157.t1 | MTR_1g100315 | 82.857 | 315 | 54 | 0 | 1 | 315 | 1 | 315 | 0.0 | 541 |
| MS.gene061157.t1 | MTR_1g100305 | 79.365 | 315 | 65 | 0 | 1 | 315 | 1 | 315 | 0.0 | 525 |
| MS.gene061157.t1 | MTR_1g100335 | 95.528 | 246 | 11 | 0 | 1 | 246 | 1 | 246 | 8.05e-174 | 482 |
| MS.gene061157.t1 | MTR_1g100335 | 95.528 | 246 | 11 | 0 | 1 | 246 | 1 | 246 | 1.75e-173 | 481 |
| MS.gene061157.t1 | MTR_8g098415 | 68.254 | 315 | 100 | 0 | 1 | 315 | 1 | 315 | 2.43e-159 | 447 |
| MS.gene061157.t1 | MTR_8g098415 | 69.156 | 308 | 95 | 0 | 1 | 308 | 1 | 308 | 5.02e-158 | 444 |
| MS.gene061157.t1 | MTR_6g053550 | 71.104 | 308 | 84 | 3 | 10 | 313 | 18 | 324 | 1.77e-153 | 433 |
| MS.gene061157.t1 | MTR_1g068970 | 58.689 | 305 | 126 | 0 | 8 | 312 | 13 | 317 | 3.91e-128 | 369 |
| MS.gene061157.t1 | MTR_8g098415 | 67.442 | 258 | 84 | 0 | 58 | 315 | 1 | 258 | 5.85e-127 | 363 |
| MS.gene061157.t1 | MTR_7g099850 | 58.824 | 306 | 125 | 1 | 8 | 312 | 13 | 318 | 9.93e-127 | 365 |
| MS.gene061157.t1 | MTR_6g053600 | 69.084 | 262 | 78 | 2 | 10 | 268 | 4 | 265 | 2.88e-126 | 363 |
| MS.gene061157.t1 | MTR_8g098415 | 73.516 | 219 | 58 | 0 | 1 | 219 | 1 | 219 | 1.19e-114 | 330 |
| MS.gene061157.t1 | MTR_1g068970 | 55.645 | 248 | 110 | 0 | 65 | 312 | 3 | 250 | 5.57e-98 | 289 |
| MS.gene061157.t1 | MTR_3g077410 | 44.231 | 312 | 170 | 2 | 8 | 315 | 13 | 324 | 8.94e-86 | 261 |
| MS.gene061157.t1 | MTR_8g099995 | 44.337 | 309 | 168 | 3 | 8 | 312 | 13 | 321 | 2.06e-81 | 250 |
| MS.gene061157.t1 | MTR_4g105310 | 43.590 | 312 | 172 | 2 | 8 | 315 | 24 | 335 | 6.39e-81 | 249 |
| MS.gene061157.t1 | MTR_4g105310 | 46.914 | 243 | 125 | 2 | 8 | 246 | 24 | 266 | 5.49e-65 | 206 |
| MS.gene061157.t1 | MTR_6g081020 | 36.187 | 257 | 144 | 8 | 30 | 275 | 62 | 309 | 2.30e-28 | 113 |
| MS.gene061157.t1 | MTR_1g100345 | 66.216 | 74 | 25 | 0 | 33 | 106 | 4 | 77 | 2.25e-26 | 100 |
| MS.gene061157.t1 | MTR_6g041980 | 29.658 | 263 | 165 | 7 | 25 | 283 | 62 | 308 | 6.05e-25 | 103 |
| MS.gene061157.t1 | MTR_2g079710 | 29.073 | 313 | 187 | 11 | 31 | 312 | 88 | 396 | 2.39e-21 | 94.0 |
| MS.gene061157.t1 | MTR_6g041980 | 28.205 | 195 | 133 | 2 | 25 | 219 | 62 | 249 | 2.11e-18 | 83.6 |
| MS.gene061157.t1 | MTR_3g091070 | 27.090 | 299 | 176 | 11 | 32 | 312 | 43 | 317 | 6.06e-17 | 80.5 |
| MS.gene061157.t1 | MTR_6g453040 | 27.815 | 302 | 188 | 11 | 32 | 312 | 43 | 335 | 8.46e-16 | 77.4 |
| MS.gene061157.t1 | MTR_3g009190 | 28.146 | 302 | 187 | 11 | 32 | 312 | 65 | 357 | 8.59e-16 | 77.4 |
| MS.gene061157.t1 | MTR_3g009190 | 28.146 | 302 | 187 | 11 | 32 | 312 | 83 | 375 | 1.18e-15 | 77.4 |
| MS.gene061157.t1 | MTR_3g009190 | 27.907 | 301 | 187 | 11 | 33 | 312 | 65 | 356 | 1.34e-13 | 70.9 |
| MS.gene061157.t1 | MTR_4g087460 | 28.049 | 246 | 141 | 7 | 32 | 242 | 24 | 268 | 4.07e-12 | 66.2 |
| MS.gene061157.t1 | MTR_8g022500 | 39.091 | 110 | 40 | 3 | 38 | 146 | 435 | 518 | 9.63e-12 | 65.9 |
| MS.gene061157.t1 | MTR_7g076660 | 24.749 | 299 | 161 | 9 | 32 | 289 | 10 | 285 | 2.69e-11 | 63.5 |
| MS.gene061157.t1 | MTR_7g076660 | 25.256 | 293 | 155 | 9 | 32 | 283 | 9 | 278 | 2.96e-11 | 63.5 |
| MS.gene061157.t1 | MTR_7g076655 | 25.000 | 280 | 153 | 10 | 32 | 273 | 9 | 269 | 6.10e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene061157.t1 | AT4G23420 | 69.231 | 312 | 95 | 1 | 1 | 311 | 1 | 312 | 1.27e-160 | 451 |
| MS.gene061157.t1 | AT4G23420 | 69.231 | 312 | 95 | 1 | 1 | 311 | 1 | 312 | 1.27e-160 | 451 |
| MS.gene061157.t1 | AT4G23430 | 68.269 | 312 | 98 | 1 | 1 | 311 | 1 | 312 | 2.75e-160 | 450 |
| MS.gene061157.t1 | AT4G23420 | 68.387 | 310 | 97 | 1 | 3 | 311 | 20 | 329 | 5.11e-157 | 442 |
| MS.gene061157.t1 | AT4G23430 | 67.628 | 312 | 98 | 2 | 1 | 311 | 1 | 310 | 6.07e-157 | 441 |
| MS.gene061157.t1 | AT4G11410 | 66.032 | 315 | 107 | 0 | 1 | 315 | 1 | 315 | 6.00e-156 | 439 |
| MS.gene061157.t1 | AT4G23430 | 65.385 | 312 | 97 | 2 | 1 | 311 | 1 | 302 | 2.23e-150 | 424 |
| MS.gene061157.t1 | AT4G23430 | 64.744 | 312 | 97 | 3 | 1 | 311 | 1 | 300 | 5.54e-147 | 416 |
| MS.gene061157.t1 | AT4G23420 | 70.229 | 262 | 77 | 1 | 1 | 261 | 1 | 262 | 1.10e-134 | 383 |
| MS.gene061157.t1 | AT4G23420 | 75.105 | 237 | 59 | 0 | 1 | 237 | 1 | 237 | 1.65e-132 | 377 |
| MS.gene061157.t1 | AT2G37540 | 55.375 | 307 | 137 | 0 | 6 | 312 | 10 | 316 | 8.54e-125 | 360 |
| MS.gene061157.t1 | AT4G11410 | 69.796 | 245 | 74 | 0 | 1 | 245 | 1 | 245 | 5.68e-124 | 355 |
| MS.gene061157.t1 | AT5G02540 | 57.980 | 307 | 129 | 0 | 6 | 312 | 10 | 316 | 5.62e-122 | 353 |
| MS.gene061157.t1 | AT2G37540 | 59.072 | 237 | 97 | 0 | 6 | 242 | 10 | 246 | 5.41e-102 | 300 |
| MS.gene061157.t1 | AT4G24050 | 44.481 | 308 | 168 | 2 | 8 | 312 | 13 | 320 | 2.59e-84 | 257 |
| MS.gene061157.t1 | AT5G50130 | 46.624 | 311 | 162 | 3 | 8 | 314 | 13 | 323 | 2.62e-84 | 258 |
| MS.gene061157.t1 | AT5G50130 | 45.583 | 283 | 153 | 1 | 33 | 314 | 7 | 289 | 7.73e-77 | 237 |
| MS.gene061157.t1 | AT5G50130 | 45.775 | 284 | 152 | 2 | 33 | 314 | 7 | 290 | 2.28e-76 | 236 |
| MS.gene061157.t1 | AT1G64590 | 44.407 | 295 | 161 | 2 | 17 | 308 | 22 | 316 | 2.25e-73 | 229 |
| MS.gene061157.t1 | AT5G50130 | 46.792 | 265 | 137 | 3 | 8 | 268 | 13 | 277 | 4.38e-71 | 223 |
| MS.gene061157.t1 | AT5G50130 | 46.992 | 266 | 136 | 4 | 8 | 268 | 13 | 278 | 1.15e-70 | 222 |
| MS.gene061157.t1 | AT5G50130 | 49.388 | 245 | 121 | 2 | 8 | 249 | 13 | 257 | 1.83e-70 | 219 |
| MS.gene061157.t1 | AT4G24050 | 45.076 | 264 | 140 | 3 | 8 | 268 | 13 | 274 | 2.98e-70 | 219 |
| MS.gene061157.t1 | AT5G50130 | 49.593 | 246 | 120 | 3 | 8 | 249 | 13 | 258 | 5.97e-70 | 218 |
| MS.gene061157.t1 | AT5G50130 | 45.798 | 238 | 127 | 2 | 33 | 268 | 7 | 244 | 5.09e-63 | 201 |
| MS.gene061157.t1 | AT5G50130 | 46.025 | 239 | 126 | 3 | 33 | 268 | 7 | 245 | 1.48e-62 | 200 |
| MS.gene061157.t1 | AT4G27760 | 31.270 | 307 | 174 | 10 | 30 | 312 | 58 | 351 | 1.34e-29 | 116 |
| MS.gene061157.t1 | AT5G53090 | 31.894 | 301 | 180 | 7 | 30 | 312 | 57 | 350 | 1.54e-26 | 108 |
| MS.gene061157.t1 | AT5G54190 | 28.939 | 311 | 186 | 11 | 33 | 312 | 96 | 402 | 5.17e-25 | 104 |
| MS.gene061157.t1 | AT1G03630 | 32.484 | 314 | 174 | 12 | 31 | 312 | 89 | 396 | 7.01e-25 | 103 |
| MS.gene061157.t1 | AT1G03630 | 32.484 | 314 | 174 | 12 | 31 | 312 | 91 | 398 | 7.75e-25 | 103 |
| MS.gene061157.t1 | AT5G53100 | 31.373 | 306 | 178 | 10 | 30 | 312 | 45 | 341 | 8.61e-25 | 103 |
| MS.gene061157.t1 | AT4G09750 | 28.475 | 295 | 167 | 9 | 4 | 283 | 20 | 285 | 1.45e-24 | 101 |
| MS.gene061157.t1 | AT4G27440 | 29.582 | 311 | 184 | 11 | 33 | 312 | 92 | 398 | 4.31e-22 | 95.9 |
| MS.gene061157.t1 | AT4G27440 | 29.582 | 311 | 184 | 11 | 33 | 312 | 92 | 398 | 4.31e-22 | 95.9 |
| MS.gene061157.t1 | AT5G15940 | 28.618 | 304 | 187 | 11 | 32 | 314 | 62 | 356 | 6.82e-20 | 89.4 |
| MS.gene061157.t1 | AT5G15940 | 28.618 | 304 | 187 | 11 | 32 | 314 | 63 | 357 | 8.13e-20 | 89.0 |
| MS.gene061157.t1 | AT5G15940 | 28.618 | 304 | 187 | 11 | 32 | 314 | 63 | 357 | 8.13e-20 | 89.0 |
| MS.gene061157.t1 | AT5G04070 | 28.378 | 296 | 184 | 7 | 32 | 308 | 61 | 347 | 2.30e-18 | 85.1 |
| MS.gene061157.t1 | AT5G54190 | 26.316 | 285 | 176 | 10 | 58 | 312 | 1 | 281 | 3.58e-17 | 80.5 |
| MS.gene061157.t1 | AT5G15940 | 28.700 | 223 | 142 | 5 | 32 | 241 | 63 | 281 | 1.84e-15 | 76.3 |
| MS.gene061157.t1 | AT5G61830 | 23.529 | 289 | 169 | 8 | 32 | 285 | 39 | 310 | 2.53e-13 | 69.7 |
| MS.gene061157.t1 | AT5G61830 | 23.529 | 289 | 169 | 8 | 32 | 285 | 39 | 310 | 2.53e-13 | 69.7 |
Find 70 sgRNAs with CRISPR-Local
Find 163 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAGCAAGAAAGGGGTTTC+TGG | 0.179687 | 1.4:-77891809 | MS.gene061157:CDS |
| ATGCAGTTCAATGTTGTCTT+TGG | 0.245720 | 1.4:+77890528 | None:intergenic |
| CTGATTTGGCTAAGAATCTA+TGG | 0.246758 | 1.4:-77889192 | MS.gene061157:CDS |
| TTTCAGCATGAATTTGATTA+AGG | 0.259296 | 1.4:-77889167 | MS.gene061157:CDS |
| CACTAATTCCCTTCACTTGT+GGG | 0.304068 | 1.4:+77889269 | None:intergenic |
| GCGTGGTGTCCATGTGATTA+TGG | 0.305515 | 1.4:-77891332 | MS.gene061157:CDS |
| CACCAATCTTTCCCGCCATA+TGG | 0.337645 | 1.4:-77889820 | MS.gene061157:CDS |
| GATTTGGTTATTACCTTGAT+TGG | 0.339925 | 1.4:+77890178 | None:intergenic |
| TTGTCAAAACGGATTCCTTC+AGG | 0.344301 | 1.4:+77890210 | None:intergenic |
| TTGTATACAGTTACAGCAAA+TGG | 0.345777 | 1.4:-77890045 | MS.gene061157:intron |
| ACAGGGAAGGGGCGCTGATT+TGG | 0.359249 | 1.4:-77889206 | MS.gene061157:CDS |
| AAAGGGGTTTCTGGATTCTC+AGG | 0.371144 | 1.4:-77891800 | MS.gene061157:CDS |
| GATTATGGCTGTTAGAAATA+AGG | 0.377539 | 1.4:-77891317 | MS.gene061157:CDS |
| GGAGTTAGATCTCAGTTCAT+TGG | 0.382633 | 1.4:-77891230 | MS.gene061157:CDS |
| ACAGGTATAATAAAGGTGAT+TGG | 0.391873 | 1.4:-77889501 | MS.gene061157:intron |
| ACCCATATGGCGGGAAAGAT+TGG | 0.391956 | 1.4:+77889818 | None:intergenic |
| GAGGCATCTTGCAAGTTCAT+TGG | 0.404865 | 1.4:+77889982 | None:intergenic |
| CCACTAATTCCCTTCACTTG+TGG | 0.410260 | 1.4:+77889268 | None:intergenic |
| CAGGTATAATAAAGGTGATT+GGG | 0.427139 | 1.4:-77889500 | MS.gene061157:CDS |
| TACAGCAAATGGGGTGCATA+TGG | 0.428773 | 1.4:-77890034 | MS.gene061157:CDS |
| ACAGGAGCATCCAGTGGTAT+TGG | 0.435914 | 1.4:-77891382 | MS.gene061157:intron |
| TTACGCAACAGGTATAATAA+AGG | 0.438898 | 1.4:-77889508 | MS.gene061157:intron |
| TGTATACAGTTACAGCAAAT+GGG | 0.440853 | 1.4:-77890044 | MS.gene061157:intron |
| CGCCATATGGGTGTACTTGA+CGG | 0.445799 | 1.4:-77889807 | MS.gene061157:intron |
| ACAAAATTAATGACCAATCA+AGG | 0.448930 | 1.4:-77890191 | MS.gene061157:intron |
| TTACATCTTGATCAGGATGA+TGG | 0.449048 | 1.4:-77889885 | MS.gene061157:intron |
| AAGACCAGTGGAATCAAATT+CGG | 0.464641 | 1.4:+77891186 | None:intergenic |
| ATGTGGCCATTCAGCAAGAA+AGG | 0.469855 | 1.4:-77891818 | MS.gene061157:CDS |
| GAAACCCCTTTCTTGCTGAA+TGG | 0.470036 | 1.4:+77891812 | None:intergenic |
| TCTTACATCAAGATGTTCAA+TGG | 0.471739 | 1.4:+77891163 | None:intergenic |
| AGATTGGTGAGAATGATTCC+TGG | 0.477751 | 1.4:+77889834 | None:intergenic |
| CCACAAGTGAAGGGAATTAG+TGG | 0.477838 | 1.4:-77889268 | MS.gene061157:CDS |
| TTCATTGGCATGTAAAATGT+TGG | 0.478897 | 1.4:+77889997 | None:intergenic |
| CTCTGCTAAAATTGATGTCA+TGG | 0.483780 | 1.4:-77891251 | MS.gene061157:CDS |
| TTGTCTTTGGACAGCATGAA+AGG | 0.496194 | 1.4:+77890541 | None:intergenic |
| GCATCCGAATTTGATTCCAC+TGG | 0.499929 | 1.4:-77891190 | MS.gene061157:CDS |
| GGCCTCACTGCTATTGTCAC+TGG | 0.501898 | 1.4:-77891734 | MS.gene061157:intron |
| TGTGGCCATTCAGCAAGAAA+GGG | 0.508330 | 1.4:-77891817 | MS.gene061157:CDS |
| ACCAATCTTTCCCGCCATAT+GGG | 0.511754 | 1.4:-77889819 | MS.gene061157:CDS |
| GCACATGAAAGTAAGAAAGA+AGG | 0.529008 | 1.4:-77890276 | MS.gene061157:CDS |
| TACCGTCAAGTACACCCATA+TGG | 0.533410 | 1.4:+77889805 | None:intergenic |
| TTCAGGATATGCAAATATGT+AGG | 0.537061 | 1.4:+77890227 | None:intergenic |
| ATTGTGAATTCTCTTCATCC+AGG | 0.539076 | 1.4:-77889852 | MS.gene061157:CDS |
| TGATTTGGCTAAGAATCTAT+GGG | 0.545121 | 1.4:-77889191 | MS.gene061157:CDS |
| AGCATTGCACCCACAAGTGA+AGG | 0.549189 | 1.4:-77889278 | MS.gene061157:CDS |
| ACTGCTGAACAAGTTACTCA+TGG | 0.551436 | 1.4:-77891770 | MS.gene061157:CDS |
| TGTCTTTGGACAGCATGAAA+GGG | 0.555783 | 1.4:+77890542 | None:intergenic |
| GTAATTGCAAGAAACAATGC+AGG | 0.558972 | 1.4:-77890577 | MS.gene061157:intron |
| TACATCTTGATCAGGATGAT+GGG | 0.560641 | 1.4:-77889884 | MS.gene061157:intron |
| GGTCTCAACTCCAATACCAC+TGG | 0.561925 | 1.4:+77891372 | None:intergenic |
| AAAACAAGATCACAGGGAAG+GGG | 0.572694 | 1.4:-77889217 | MS.gene061157:CDS |
| GTCAAGTACACCCATATGGC+GGG | 0.577914 | 1.4:+77889809 | None:intergenic |
| TACATATTTGCATATCCTGA+AGG | 0.585299 | 1.4:-77890225 | MS.gene061157:CDS |
| AAGGGGTTTCTGGATTCTCA+GGG | 0.585889 | 1.4:-77891799 | MS.gene061157:CDS |
| TGAACTTGCAAGATGCCTCA+AGG | 0.616025 | 1.4:-77889978 | MS.gene061157:intron |
| TTCTAACAGCCATAATCACA+TGG | 0.621462 | 1.4:+77891323 | None:intergenic |
| GCATTGCACCCACAAGTGAA+GGG | 0.624705 | 1.4:-77889277 | MS.gene061157:CDS |
| TCTTGATCAGGATGATGGGG+TGG | 0.624894 | 1.4:-77889880 | MS.gene061157:intron |
| CAATGCTACATAGCATGTTG+TGG | 0.627328 | 1.4:+77889294 | None:intergenic |
| GTGGCCATTCAGCAAGAAAG+GGG | 0.627372 | 1.4:-77891816 | MS.gene061157:CDS |
| GATGTTCAATGGAAGACCAG+TGG | 0.631573 | 1.4:+77891174 | None:intergenic |
| ACGCGTGTTCTTGCTTTGCG+TGG | 0.635276 | 1.4:-77891349 | MS.gene061157:CDS |
| CGTCAAGTACACCCATATGG+CGG | 0.638805 | 1.4:+77889808 | None:intergenic |
| ACTCATGGAATTGATGCAAG+TGG | 0.647904 | 1.4:-77891755 | MS.gene061157:CDS |
| GTATACAGTTACAGCAAATG+GGG | 0.659776 | 1.4:-77890043 | MS.gene061157:intron |
| ACATCTTGATCAGGATGATG+GGG | 0.677424 | 1.4:-77889883 | MS.gene061157:intron |
| ATGGTAACAGGAGCATCCAG+TGG | 0.683391 | 1.4:-77891388 | MS.gene061157:intron |
| ATATTTCCCACATACCTAGG+TGG | 0.684024 | 1.4:+77890494 | None:intergenic |
| ACGCAAAGCAAGAACACGCG+TGG | 0.690438 | 1.4:+77891351 | None:intergenic |
| GACCAGTGACAATAGCAGTG+AGG | 0.746778 | 1.4:+77891732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATAACTTAATTATAT+AGG | + | chr1.4:77890532-77890551 | None:intergenic | 10.0% |
| !! | CAAAATAAATAGTAAATAAA+AGG | + | chr1.4:77890289-77890308 | None:intergenic | 10.0% |
| !! | AAAAACTACTATTTAACAAA+GGG | + | chr1.4:77889325-77889344 | None:intergenic | 15.0% |
| !! | AAATTATTATATGGATATGA+TGG | - | chr1.4:77889565-77889584 | MS.gene061157:intron | 15.0% |
| !! | GAAACTTTAAATTAAGTTAA+AGG | - | chr1.4:77890246-77890265 | MS.gene061157:CDS | 15.0% |
| !! | TAAAAACTACTATTTAACAA+AGG | + | chr1.4:77889326-77889345 | None:intergenic | 15.0% |
| !! | AAAACTTTAGATTAAGTTAG+AGG | + | chr1.4:77889898-77889917 | None:intergenic | 20.0% |
| !! | TAACAACTTCAATAAAAATC+AGG | + | chr1.4:77890315-77890334 | None:intergenic | 20.0% |
| !! | TATCATTCATCTACATTTAT+AGG | - | chr1.4:77891338-77891357 | MS.gene061157:CDS | 20.0% |
| !! | TCATTGAACAATATATGATA+AGG | + | chr1.4:77890119-77890138 | None:intergenic | 20.0% |
| !!! | TTTTATGTTGCAGAATTATT+TGG | - | chr1.4:77889341-77889360 | MS.gene061157:intron | 20.0% |
| ! | AATCAGTTCAAATAAATGTG+AGG | - | chr1.4:77891536-77891555 | MS.gene061157:intron | 25.0% |
| ! | ACAAAATTAATGACCAATCA+AGG | - | chr1.4:77890786-77890805 | MS.gene061157:intron | 25.0% |
| ! | AGGATCAGTTCAAATAAAAT+TGG | - | chr1.4:77891556-77891575 | MS.gene061157:intron | 25.0% |
| ! | ATTATATGGATATGATGGTA+TGG | - | chr1.4:77889570-77889589 | MS.gene061157:intron | 25.0% |
| ! | GGCTACGATAAATTATTATA+TGG | - | chr1.4:77889556-77889575 | MS.gene061157:intron | 25.0% |
| ! | GTTTACAGAAAAACTCTTTA+TGG | - | chr1.4:77889990-77890009 | MS.gene061157:CDS | 25.0% |
| ! | TGTAAATTATGTAATTGTGC+AGG | - | chr1.4:77890632-77890651 | MS.gene061157:intron | 25.0% |
| ! | TTACATAAAATTCTTGCAAC+TGG | - | chr1.4:77889535-77889554 | MS.gene061157:intron | 25.0% |
| ! | TTCTTTAAATGCTTAAACTG+TGG | - | chr1.4:77890582-77890601 | MS.gene061157:intron | 25.0% |
| ! | TTGAACGCTGTAAATATAAA+GGG | - | chr1.4:77890186-77890205 | MS.gene061157:intron | 25.0% |
| ! | TTTCAGCATGAATTTGATTA+AGG | - | chr1.4:77891810-77891829 | MS.gene061157:CDS | 25.0% |
| ! | TTTGAACTTATGTTACCTAT+TGG | + | chr1.4:77890824-77890843 | None:intergenic | 25.0% |
| !! | GGTCATTAATTTTGTCAAAA+CGG | + | chr1.4:77890781-77890800 | None:intergenic | 25.0% |
| !! | TGTCATTACTACACATTTTA+TGG | + | chr1.4:77891409-77891428 | None:intergenic | 25.0% |
| !!! | TTTGTTTTTGTGTGTAAAAC+TGG | - | chr1.4:77891036-77891055 | MS.gene061157:intron | 25.0% |
| ACAGGTATAATAAAGGTGAT+TGG | - | chr1.4:77891476-77891495 | MS.gene061157:intron | 30.0% | |
| ACTTTCTCCTATCTAAATGT+AGG | - | chr1.4:77891654-77891673 | MS.gene061157:intron | 30.0% | |
| AGGTAATAACCAAATCCAAT+AGG | - | chr1.4:77890806-77890825 | MS.gene061157:intron | 30.0% | |
| ATAAAAGGAAAATCTGCACA+TGG | + | chr1.4:77890274-77890293 | None:intergenic | 30.0% | |
| ATGAAGAATTAAGAGTGGAA+AGG | - | chr1.4:77890889-77890908 | MS.gene061157:intron | 30.0% | |
| CAGGTATAATAAAGGTGATT+GGG | - | chr1.4:77891477-77891496 | MS.gene061157:intron | 30.0% | |
| CATGATCAAGAAAGATAAAC+TGG | + | chr1.4:77890373-77890392 | None:intergenic | 30.0% | |
| CTTAATTCTTCATGCAACTA+AGG | + | chr1.4:77890882-77890901 | None:intergenic | 30.0% | |
| CTTATGTTACCTATTGGATT+TGG | + | chr1.4:77890818-77890837 | None:intergenic | 30.0% | |
| CTTTCTCCTATCTAAATGTA+GGG | - | chr1.4:77891655-77891674 | MS.gene061157:intron | 30.0% | |
| GAACATCTTGATGTAAGAAA+AGG | - | chr1.4:77889819-77889838 | MS.gene061157:CDS | 30.0% | |
| GATTATGGCTGTTAGAAATA+AGG | - | chr1.4:77889660-77889679 | MS.gene061157:intron | 30.0% | |
| GTTGAACGCTGTAAATATAA+AGG | - | chr1.4:77890185-77890204 | MS.gene061157:intron | 30.0% | |
| TAAAAGGAAAATCTGCACAT+GGG | + | chr1.4:77890273-77890292 | None:intergenic | 30.0% | |
| TACATATTTGCATATCCTGA+AGG | - | chr1.4:77890752-77890771 | MS.gene061157:intron | 30.0% | |
| TCTTACATCAAGATGTTCAA+TGG | + | chr1.4:77889817-77889836 | None:intergenic | 30.0% | |
| TGTATACAGTTACAGCAAAT+GGG | - | chr1.4:77890933-77890952 | MS.gene061157:intron | 30.0% | |
| TTACGCAACAGGTATAATAA+AGG | - | chr1.4:77891469-77891488 | MS.gene061157:intron | 30.0% | |
| TTCAGGATATGCAAATATGT+AGG | + | chr1.4:77890753-77890772 | None:intergenic | 30.0% | |
| TTCATTGGCATGTAAAATGT+TGG | + | chr1.4:77890983-77891002 | None:intergenic | 30.0% | |
| TTGTATACAGTTACAGCAAA+TGG | - | chr1.4:77890932-77890951 | MS.gene061157:intron | 30.0% | |
| ! | ATTTAGAATGTCATGTCACA+GGG | + | chr1.4:77891253-77891272 | None:intergenic | 30.0% |
| ! | CAGTTTTGCCTAAACAAAAA+TGG | + | chr1.4:77889865-77889884 | None:intergenic | 30.0% |
| ! | GATTTGGTTATTACCTTGAT+TGG | + | chr1.4:77890802-77890821 | None:intergenic | 30.0% |
| ! | TCTCTTGACAAATCTTTTGT+TGG | - | chr1.4:77890661-77890680 | MS.gene061157:intron | 30.0% |
| ! | TGATTTGGCTAAGAATCTAT+GGG | - | chr1.4:77891786-77891805 | MS.gene061157:CDS | 30.0% |
| ! | TTACTTGTTACATCTTGATC+AGG | - | chr1.4:77891085-77891104 | MS.gene061157:intron | 30.0% |
| ! | TTATGTTTGATTTACGCAAC+AGG | - | chr1.4:77891458-77891477 | MS.gene061157:intron | 30.0% |
| !! | ATGACATCAATTTTAGCAGA+GGG | + | chr1.4:77889727-77889746 | None:intergenic | 30.0% |
| !! | ATTTGCTGTAACTGTATACA+AGG | + | chr1.4:77890933-77890952 | None:intergenic | 30.0% |
| !! | GTATTTTTCAGAGAGTAATG+TGG | - | chr1.4:77891735-77891754 | MS.gene061157:CDS | 30.0% |
| !!! | ATAGGTGTTTTATTTGCACA+TGG | - | chr1.4:77891356-77891375 | MS.gene061157:CDS | 30.0% |
| !!! | GGGAAATATGTTTGGTTTTA+AGG | - | chr1.4:77890497-77890516 | MS.gene061157:intron | 30.0% |
| AAAAACAAGATCACAGGGAA+GGG | - | chr1.4:77891759-77891778 | MS.gene061157:CDS | 35.0% | |
| AACATATTTCCCACATACCT+AGG | + | chr1.4:77890489-77890508 | None:intergenic | 35.0% | |
| AAGAATTAAGAGTGGAAAGG+TGG | - | chr1.4:77890892-77890911 | MS.gene061157:intron | 35.0% | |
| AAGACCAGTGGAATCAAATT+CGG | + | chr1.4:77889794-77889813 | None:intergenic | 35.0% | |
| AGGTATGTGGGAAATATGTT+TGG | - | chr1.4:77890489-77890508 | MS.gene061157:intron | 35.0% | |
| ATGCAGTTCAATGTTGTCTT+TGG | + | chr1.4:77890452-77890471 | None:intergenic | 35.0% | |
| ATTGTGAATTCTCTTCATCC+AGG | - | chr1.4:77891125-77891144 | MS.gene061157:intron | 35.0% | |
| CATTATCTACCGATGTTATG+TGG | - | chr1.4:77891285-77891304 | MS.gene061157:CDS | 35.0% | |
| CTCTGCTAAAATTGATGTCA+TGG | - | chr1.4:77889726-77889745 | MS.gene061157:intron | 35.0% | |
| CTGTAACTGTATACAAGGAA+GGG | + | chr1.4:77890928-77890947 | None:intergenic | 35.0% | |
| GCACATGAAAGTAAGAAAGA+AGG | - | chr1.4:77890701-77890720 | MS.gene061157:intron | 35.0% | |
| GCCTAAACAAAAATGGTTCT+GGG | + | chr1.4:77889858-77889877 | None:intergenic | 35.0% | |
| GTAATTGCAAGAAACAATGC+AGG | - | chr1.4:77890400-77890419 | MS.gene061157:intron | 35.0% | |
| GTATACAGTTACAGCAAATG+GGG | - | chr1.4:77890934-77890953 | MS.gene061157:intron | 35.0% | |
| GTTGCATGAAGAATTAAGAG+TGG | - | chr1.4:77890884-77890903 | MS.gene061157:intron | 35.0% | |
| TACATCTTGATCAGGATGAT+GGG | - | chr1.4:77891093-77891112 | MS.gene061157:intron | 35.0% | |
| TATAAAGGGCTAACTTGACA+CGG | - | chr1.4:77890200-77890219 | MS.gene061157:CDS | 35.0% | |
| TGCCTAAACAAAAATGGTTC+TGG | + | chr1.4:77889859-77889878 | None:intergenic | 35.0% | |
| TGTAAGAAAAGGAACTGACT+TGG | - | chr1.4:77889830-77889849 | MS.gene061157:CDS | 35.0% | |
| TGTGATGAAAAATGTTCAGC+AGG | - | chr1.4:77891505-77891524 | MS.gene061157:intron | 35.0% | |
| TTACATCTTGATCAGGATGA+TGG | - | chr1.4:77891092-77891111 | MS.gene061157:intron | 35.0% | |
| TTCTAACAGCCATAATCACA+TGG | + | chr1.4:77889657-77889676 | None:intergenic | 35.0% | |
| ! | CATTTAGAATGTCATGTCAC+AGG | + | chr1.4:77891254-77891273 | None:intergenic | 35.0% |
| ! | CTTTTGTGGTCAATTTCTGT+GGG | + | chr1.4:77890021-77890040 | None:intergenic | 35.0% |
| ! | GACACAGTATCTGAGTTTTA+TGG | - | chr1.4:77891425-77891444 | MS.gene061157:intron | 35.0% |
| ! | TCTCAGATTCGAATCTTTTG+TGG | + | chr1.4:77890035-77890054 | None:intergenic | 35.0% |
| ! | TCTTTTGTGGTCAATTTCTG+TGG | + | chr1.4:77890022-77890041 | None:intergenic | 35.0% |
| ! | TGCAAATATGTAGGCTTTTG+CGG | + | chr1.4:77890744-77890763 | None:intergenic | 35.0% |
| !! | CATGACATCAATTTTAGCAG+AGG | + | chr1.4:77889728-77889747 | None:intergenic | 35.0% |
| !! | CTGATTTGGCTAAGAATCTA+TGG | - | chr1.4:77891785-77891804 | MS.gene061157:CDS | 35.0% |
| !! | TCCCAGAACCATTTTTGTTT+AGG | - | chr1.4:77889854-77889873 | MS.gene061157:CDS | 35.0% |
| AAAACAAGATCACAGGGAAG+GGG | - | chr1.4:77891760-77891779 | MS.gene061157:CDS | 40.0% | |
| AACAAACCACCTAGGTATGT+GGG | - | chr1.4:77890477-77890496 | MS.gene061157:intron | 40.0% | |
| AACTGGAACACAGATACTCA+TGG | + | chr1.4:77890356-77890375 | None:intergenic | 40.0% | |
| ACATCTTGATCAGGATGATG+GGG | - | chr1.4:77891094-77891113 | MS.gene061157:intron | 40.0% | |
| ACGATAGTGCCACATAACAT+CGG | + | chr1.4:77891297-77891316 | None:intergenic | 40.0% | |
| ACTCATGGAATTGATGCAAG+TGG | - | chr1.4:77889222-77889241 | MS.gene061157:CDS | 40.0% | |
| ACTGCTGAACAAGTTACTCA+TGG | - | chr1.4:77889207-77889226 | MS.gene061157:CDS | 40.0% | |
| AGATTGGTGAGAATGATTCC+TGG | + | chr1.4:77891146-77891165 | None:intergenic | 40.0% | |
| ATAAAGGGCTAACTTGACAC+GGG | - | chr1.4:77890201-77890220 | MS.gene061157:CDS | 40.0% | |
| ATATTTCCCACATACCTAGG+TGG | + | chr1.4:77890486-77890505 | None:intergenic | 40.0% | |
| CAAAAACAAGATCACAGGGA+AGG | - | chr1.4:77891758-77891777 | MS.gene061157:CDS | 40.0% | |
| CAATGCTACATAGCATGTTG+TGG | + | chr1.4:77891686-77891705 | None:intergenic | 40.0% | |
| CACTAATTCCCTTCACTTGT+GGG | + | chr1.4:77891711-77891730 | None:intergenic | 40.0% | |
| CTGCTGAAATTTGCATAGTC+AGG | - | chr1.4:77889483-77889502 | MS.gene061157:CDS | 40.0% | |
| GCTGTAACTGTATACAAGGA+AGG | + | chr1.4:77890929-77890948 | None:intergenic | 40.0% | |
| GGAGTTAGATCTCAGTTCAT+TGG | - | chr1.4:77889747-77889766 | MS.gene061157:intron | 40.0% | |
| GGATATGATGGTATGGTAAC+AGG | - | chr1.4:77889577-77889596 | MS.gene061157:intron | 40.0% | |
| GTGGCAAAAACAAGATCACA+GGG | - | chr1.4:77891754-77891773 | MS.gene061157:CDS | 40.0% | |
| TGTCTTTGGACAGCATGAAA+GGG | + | chr1.4:77890438-77890457 | None:intergenic | 40.0% | |
| TGTGGCAAAAACAAGATCAC+AGG | - | chr1.4:77891753-77891772 | MS.gene061157:CDS | 40.0% | |
| TGTTTAGGCAAAACTGCACT+AGG | - | chr1.4:77889869-77889888 | MS.gene061157:CDS | 40.0% | |
| TTGTCTTTGGACAGCATGAA+AGG | + | chr1.4:77890439-77890458 | None:intergenic | 40.0% | |
| ! | CATTTTGCAACAAACCACCT+AGG | - | chr1.4:77890469-77890488 | MS.gene061157:intron | 40.0% |
| ! | TCATGACAAGATGTGCTGTT+AGG | - | chr1.4:77890844-77890863 | MS.gene061157:intron | 40.0% |
| ! | TTGTCAAAACGGATTCCTTC+AGG | + | chr1.4:77890770-77890789 | None:intergenic | 40.0% |
| ACCAATCTTTCCCGCCATAT+GGG | - | chr1.4:77891158-77891177 | MS.gene061157:intron | 45.0% | |
| AGAGAAACTAGCACACCTTG+AGG | + | chr1.4:77891017-77891036 | None:intergenic | 45.0% | |
| ATGTGGCCATTCAGCAAGAA+AGG | - | chr1.4:77889159-77889178 | MS.gene061157:CDS | 45.0% | |
| CAACAAACCACCTAGGTATG+TGG | - | chr1.4:77890476-77890495 | MS.gene061157:intron | 45.0% | |
| CCACAAGTGAAGGGAATTAG+TGG | - | chr1.4:77891709-77891728 | MS.gene061157:intron | 45.0% | |
| CCACTAATTCCCTTCACTTG+TGG | + | chr1.4:77891712-77891731 | None:intergenic | 45.0% | |
| GAAACCCCTTTCTTGCTGAA+TGG | + | chr1.4:77889168-77889187 | None:intergenic | 45.0% | |
| GATGTTCAATGGAAGACCAG+TGG | + | chr1.4:77889806-77889825 | None:intergenic | 45.0% | |
| GCATCCGAATTTGATTCCAC+TGG | - | chr1.4:77889787-77889806 | MS.gene061157:intron | 45.0% | |
| GCTGCACCCTACATTTAGAT+AGG | + | chr1.4:77891664-77891683 | None:intergenic | 45.0% | |
| TAAAGGGCTAACTTGACACG+GGG | - | chr1.4:77890202-77890221 | MS.gene061157:CDS | 45.0% | |
| TAACCACTAGGAAAACCGCT+GGG | - | chr1.4:77890088-77890107 | MS.gene061157:intron | 45.0% | |
| TACAGCAAATGGGGTGCATA+TGG | - | chr1.4:77890943-77890962 | MS.gene061157:intron | 45.0% | |
| TACCGTCAAGTACACCCATA+TGG | + | chr1.4:77891175-77891194 | None:intergenic | 45.0% | |
| TATGATAAGGAAACCCCCAG+CGG | + | chr1.4:77890106-77890125 | None:intergenic | 45.0% | |
| TGAACTTGCAAGATGCCTCA+AGG | - | chr1.4:77890999-77891018 | MS.gene061157:intron | 45.0% | |
| TGTGGCCATTCAGCAAGAAA+GGG | - | chr1.4:77889160-77889179 | MS.gene061157:CDS | 45.0% | |
| TTCAGCAAGAAAGGGGTTTC+TGG | - | chr1.4:77889168-77889187 | MS.gene061157:CDS | 45.0% | |
| ! | AAAGGGGTTTCTGGATTCTC+AGG | - | chr1.4:77889177-77889196 | MS.gene061157:CDS | 45.0% |
| ! | AAGGGGTTTCTGGATTCTCA+GGG | - | chr1.4:77889178-77889197 | MS.gene061157:CDS | 45.0% |
| ! | GAGGCATCTTGCAAGTTCAT+TGG | + | chr1.4:77890998-77891017 | None:intergenic | 45.0% |
| !!! | AAAATGAAATTTTTTAAAAA+TGG | + | chr1.4:77889293-77889312 | None:intergenic | 5.0% |
| AACCACTAGGAAAACCGCTG+GGG | - | chr1.4:77890089-77890108 | MS.gene061157:intron | 50.0% | |
| AGCATTGCACCCACAAGTGA+AGG | - | chr1.4:77891699-77891718 | MS.gene061157:intron | 50.0% | |
| AGGTCTCAAGCCTAACCACT+AGG | - | chr1.4:77890076-77890095 | MS.gene061157:intron | 50.0% | |
| CACCAATCTTTCCCGCCATA+TGG | - | chr1.4:77891157-77891176 | MS.gene061157:intron | 50.0% | |
| CGCCATATGGGTGTACTTGA+CGG | - | chr1.4:77891170-77891189 | MS.gene061157:CDS | 50.0% | |
| CGTCAAGTACACCCATATGG+CGG | + | chr1.4:77891172-77891191 | None:intergenic | 50.0% | |
| CTAACCACTAGGAAAACCGC+TGG | - | chr1.4:77890087-77890106 | MS.gene061157:intron | 50.0% | |
| CTTCGAGTGTGCTCTTCTCA+AGG | + | chr1.4:77890058-77890077 | None:intergenic | 50.0% | |
| GACCAGTGACAATAGCAGTG+AGG | + | chr1.4:77889248-77889267 | None:intergenic | 50.0% | |
| GCATTGCACCCACAAGTGAA+GGG | - | chr1.4:77891700-77891719 | MS.gene061157:intron | 50.0% | |
| GCGTGGTGTCCATGTGATTA+TGG | - | chr1.4:77889645-77889664 | MS.gene061157:intron | 50.0% | |
| GGTCTCAACTCCAATACCAC+TGG | + | chr1.4:77889608-77889627 | None:intergenic | 50.0% | |
| GTCAAGTACACCCATATGGC+GGG | + | chr1.4:77891171-77891190 | None:intergenic | 50.0% | |
| GTGGCCATTCAGCAAGAAAG+GGG | - | chr1.4:77889161-77889180 | MS.gene061157:CDS | 50.0% | |
| ! | ACCCATATGGCGGGAAAGAT+TGG | + | chr1.4:77891162-77891181 | None:intergenic | 50.0% |
| ! | CAGCGGTTTTCCTAGTGGTT+AGG | + | chr1.4:77890089-77890108 | None:intergenic | 50.0% |
| ! | CTTGAGAAGAGCACACTCGA+AGG | - | chr1.4:77890056-77890075 | MS.gene061157:intron | 50.0% |
| !! | ACAGGAGCATCCAGTGGTAT+TGG | - | chr1.4:77889595-77889614 | MS.gene061157:intron | 50.0% |
| !! | ATGGTAACAGGAGCATCCAG+TGG | - | chr1.4:77889589-77889608 | MS.gene061157:intron | 50.0% |
| !! | TCTTGATCAGGATGATGGGG+TGG | - | chr1.4:77891097-77891116 | MS.gene061157:intron | 50.0% |
| ACCACTAGGAAAACCGCTGG+GGG | - | chr1.4:77890090-77890109 | MS.gene061157:intron | 55.0% | |
| ACGCAAAGCAAGAACACGCG+TGG | + | chr1.4:77889629-77889648 | None:intergenic | 55.0% | |
| ACGCGTGTTCTTGCTTTGCG+TGG | - | chr1.4:77889628-77889647 | MS.gene061157:intron | 55.0% | |
| GGCCTCACTGCTATTGTCAC+TGG | - | chr1.4:77889243-77889262 | MS.gene061157:CDS | 55.0% | |
| ! | ACCCCCAGCGGTTTTCCTAG+TGG | + | chr1.4:77890094-77890113 | None:intergenic | 60.0% |
| !! | ACAGGGAAGGGGCGCTGATT+TGG | - | chr1.4:77891771-77891790 | MS.gene061157:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 77889159 | 77891840 | 77889159 | ID=MS.gene061157 |
| chr1.4 | mRNA | 77889159 | 77891840 | 77889159 | ID=MS.gene061157.t1;Parent=MS.gene061157 |
| chr1.4 | exon | 77891735 | 77891840 | 77891735 | ID=MS.gene061157.t1.exon1;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77891735 | 77891840 | 77891735 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77891169 | 77891400 | 77891169 | ID=MS.gene061157.t1.exon2;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77891169 | 77891400 | 77891169 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77890509 | 77890588 | 77890509 | ID=MS.gene061157.t1.exon3;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77890509 | 77890588 | 77890509 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77890192 | 77890345 | 77890192 | ID=MS.gene061157.t1.exon4;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77890192 | 77890345 | 77890192 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77889979 | 77890057 | 77889979 | ID=MS.gene061157.t1.exon5;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77889979 | 77890057 | 77889979 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77889808 | 77889892 | 77889808 | ID=MS.gene061157.t1.exon6;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77889808 | 77889892 | 77889808 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77889473 | 77889519 | 77889473 | ID=MS.gene061157.t1.exon7;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77889473 | 77889519 | 77889473 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| chr1.4 | exon | 77889159 | 77889323 | 77889159 | ID=MS.gene061157.t1.exon8;Parent=MS.gene061157.t1 |
| chr1.4 | CDS | 77889159 | 77889323 | 77889159 | ID=cds.MS.gene061157.t1;Parent=MS.gene061157.t1 |
| Gene Sequence |
| Protein sequence |
