AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene49118


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49118.t1 MTR_1g100335 96.190 315 12 0 1 315 1 315 0.0 622
MS.gene49118.t1 MTR_1g100395 90.705 312 29 0 1 312 1 312 0.0 582
MS.gene49118.t1 MTR_1g100315 83.492 315 52 0 1 315 1 315 0.0 543
MS.gene49118.t1 MTR_1g100305 80.000 315 63 0 1 315 1 315 0.0 528
MS.gene49118.t1 MTR_1g100335 96.748 246 8 0 1 246 1 246 2.52e-176 488
MS.gene49118.t1 MTR_1g100335 96.748 246 8 0 1 246 1 246 6.19e-176 488
MS.gene49118.t1 MTR_8g098415 68.889 315 98 0 1 315 1 315 5.07e-160 449
MS.gene49118.t1 MTR_8g098415 69.805 308 93 0 1 308 1 308 1.02e-158 446
MS.gene49118.t1 MTR_6g053550 72.078 308 81 3 10 313 18 324 1.50e-155 438
MS.gene49118.t1 MTR_1g068970 58.689 305 126 0 8 312 13 317 1.74e-128 369
MS.gene49118.t1 MTR_6g053600 70.229 262 75 2 10 268 4 265 5.17e-128 367
MS.gene49118.t1 MTR_8g098415 68.217 258 82 0 58 315 1 258 7.64e-128 365
MS.gene49118.t1 MTR_7g099850 58.824 306 125 1 8 312 13 318 1.16e-126 365
MS.gene49118.t1 MTR_8g098415 74.429 219 56 0 1 219 1 219 2.28e-115 332
MS.gene49118.t1 MTR_1g068970 56.048 248 109 0 65 312 3 250 8.00e-99 291
MS.gene49118.t1 MTR_3g077410 44.231 312 170 2 8 315 13 324 1.08e-85 261
MS.gene49118.t1 MTR_8g099995 44.660 309 167 3 8 312 13 321 6.82e-82 251
MS.gene49118.t1 MTR_4g105310 43.590 312 172 2 8 315 24 335 6.06e-81 249
MS.gene49118.t1 MTR_4g105310 46.914 243 125 2 8 246 24 266 6.96e-65 205
MS.gene49118.t1 MTR_6g081020 36.187 257 144 8 30 275 62 309 4.87e-29 115
MS.gene49118.t1 MTR_1g100345 64.865 74 26 0 33 106 4 77 3.19e-26 99.8
MS.gene49118.t1 MTR_6g041980 29.278 263 166 7 25 283 62 308 2.52e-24 101
MS.gene49118.t1 MTR_2g079710 29.393 313 186 11 31 312 88 396 7.12e-22 95.1
MS.gene49118.t1 MTR_6g041980 27.692 195 134 2 25 219 62 249 7.52e-18 82.0
MS.gene49118.t1 MTR_3g091070 28.105 306 164 13 32 312 43 317 3.63e-17 80.9
MS.gene49118.t1 MTR_6g453040 27.778 306 183 11 32 312 43 335 2.24e-16 79.0
MS.gene49118.t1 MTR_3g009190 28.105 306 182 11 32 312 65 357 2.62e-16 79.0
MS.gene49118.t1 MTR_3g009190 28.105 306 182 11 32 312 83 375 3.12e-16 79.0
MS.gene49118.t1 MTR_3g009190 27.869 305 182 11 33 312 65 356 4.29e-14 72.4
MS.gene49118.t1 MTR_4g087460 27.642 246 142 7 32 242 24 268 1.04e-11 65.1
MS.gene49118.t1 MTR_7g076660 25.256 293 155 9 32 283 9 278 1.22e-11 64.7
MS.gene49118.t1 MTR_7g076660 24.749 299 161 9 32 289 10 285 1.45e-11 64.3
MS.gene49118.t1 MTR_8g022500 39.091 110 40 3 38 146 435 518 1.63e-11 65.1
MS.gene49118.t1 MTR_7g076655 24.014 279 157 8 32 273 9 269 3.13e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene49118.t1 AT4G23420 69.551 312 94 1 1 311 1 312 2.06e-161 452
MS.gene49118.t1 AT4G23420 69.551 312 94 1 1 311 1 312 2.06e-161 452
MS.gene49118.t1 AT4G23430 68.269 312 98 1 1 311 1 312 2.31e-160 450
MS.gene49118.t1 AT4G23420 68.710 310 96 1 3 311 20 329 4.96e-158 445
MS.gene49118.t1 AT4G23430 67.628 312 98 2 1 311 1 310 5.27e-157 441
MS.gene49118.t1 AT4G11410 66.032 315 107 0 1 315 1 315 2.18e-155 437
MS.gene49118.t1 AT4G23430 65.385 312 97 2 1 311 1 302 1.98e-150 424
MS.gene49118.t1 AT4G23430 64.744 312 97 3 1 311 1 300 4.13e-147 416
MS.gene49118.t1 AT4G23420 70.611 262 76 1 1 261 1 262 1.93e-135 385
MS.gene49118.t1 AT4G23420 75.527 237 58 0 1 237 1 237 2.87e-133 379
MS.gene49118.t1 AT2G37540 55.375 307 137 0 6 312 10 316 1.52e-124 359
MS.gene49118.t1 AT4G11410 69.796 245 74 0 1 245 1 245 2.30e-123 354
MS.gene49118.t1 AT5G02540 58.632 307 127 0 6 312 10 316 5.73e-123 356
MS.gene49118.t1 AT2G37540 59.072 237 97 0 6 242 10 246 1.16e-101 299
MS.gene49118.t1 AT5G50130 46.624 311 162 3 8 314 13 323 1.34e-84 258
MS.gene49118.t1 AT4G24050 44.805 308 167 2 8 312 13 320 2.54e-84 257
MS.gene49118.t1 AT5G50130 45.936 283 152 1 33 314 7 289 1.71e-77 239
MS.gene49118.t1 AT5G50130 46.127 284 151 2 33 314 7 290 5.58e-77 238
MS.gene49118.t1 AT1G64590 44.746 295 160 2 17 308 22 316 2.51e-73 229
MS.gene49118.t1 AT5G50130 46.792 265 137 3 8 268 13 277 2.61e-71 224
MS.gene49118.t1 AT5G50130 46.992 266 136 4 8 268 13 278 7.25e-71 223
MS.gene49118.t1 AT5G50130 49.388 245 121 2 8 249 13 257 1.34e-70 220
MS.gene49118.t1 AT5G50130 49.593 246 120 3 8 249 13 258 3.91e-70 219
MS.gene49118.t1 AT4G24050 45.455 264 139 3 8 268 13 274 4.12e-70 219
MS.gene49118.t1 AT5G50130 46.218 238 126 2 33 268 7 244 1.29e-63 203
MS.gene49118.t1 AT5G50130 46.444 239 125 3 33 268 7 245 3.06e-63 202
MS.gene49118.t1 AT4G27760 31.596 307 173 10 30 312 58 351 1.21e-29 116
MS.gene49118.t1 AT5G53090 31.561 301 181 6 30 312 57 350 7.86e-27 108
MS.gene49118.t1 AT5G54190 28.939 311 186 11 33 312 96 402 2.66e-25 105
MS.gene49118.t1 AT4G09750 28.814 295 166 9 4 283 20 285 2.73e-25 103
MS.gene49118.t1 AT5G53100 31.373 306 178 10 30 312 45 341 1.20e-24 102
MS.gene49118.t1 AT1G03630 32.595 316 171 14 31 312 89 396 2.39e-24 102
MS.gene49118.t1 AT1G03630 32.595 316 171 14 31 312 91 398 2.47e-24 102
MS.gene49118.t1 AT4G27440 29.260 311 185 11 33 312 92 398 9.50e-22 95.1
MS.gene49118.t1 AT4G27440 29.260 311 185 11 33 312 92 398 9.50e-22 95.1
MS.gene49118.t1 AT5G04070 29.667 300 175 10 32 308 61 347 3.92e-18 84.3
MS.gene49118.t1 AT5G15940 27.632 304 190 11 32 314 62 356 4.90e-18 84.0
MS.gene49118.t1 AT5G15940 27.632 304 190 11 32 314 63 357 4.99e-18 84.0
MS.gene49118.t1 AT5G15940 27.632 304 190 11 32 314 63 357 4.99e-18 84.0
MS.gene49118.t1 AT5G54190 26.316 285 176 10 58 312 1 281 1.55e-17 81.6
MS.gene49118.t1 AT5G15940 27.354 223 145 5 32 241 63 281 1.16e-13 70.9
MS.gene49118.t1 AT5G61830 23.183 289 170 8 32 285 39 310 7.49e-13 68.6
MS.gene49118.t1 AT5G61830 23.183 289 170 8 32 285 39 310 7.49e-13 68.6

Find 69 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGCAAGAAAGGGGTTTC+TGG 0.179687 1.3:-68984615 MS.gene49118:CDS
ATGCAGTTCAATGTTGTCTT+TGG 0.245720 1.3:+68983251 None:intergenic
CTGATTTGGCTAAGAATCTA+TGG 0.246758 1.3:-68981923 MS.gene49118:CDS
TTTCAGCATGAATTTGATTA+AGG 0.259296 1.3:-68981898 MS.gene49118:CDS
CACTAATTCCCTTCACTTGT+GGG 0.304068 1.3:+68982000 None:intergenic
GCGTGGTGTCCATGTGATTA+TGG 0.305515 1.3:-68984204 MS.gene49118:CDS
CACCAATCTTTCCCGCCATA+TGG 0.337645 1.3:-68982551 MS.gene49118:CDS
TTGTCAAAACGGATTCCTTC+AGG 0.344301 1.3:+68982941 None:intergenic
GATTTGGTTATTACCTTGAT+TGG 0.345341 1.3:+68982909 None:intergenic
TTGTATACAGTTACAGCAAA+TGG 0.345777 1.3:-68982776 MS.gene49118:intron
ACAGGGAAGGGGCGCTGATT+TGG 0.359249 1.3:-68981937 MS.gene49118:CDS
AAAGGGGTTTCTGGATTCTC+AGG 0.371144 1.3:-68984606 MS.gene49118:CDS
GATTATGGCTGTTAGAAATA+AGG 0.377539 1.3:-68984189 MS.gene49118:CDS
GGAGTTAGATCTCAGTTCAT+TGG 0.382633 1.3:-68984102 MS.gene49118:CDS
ACAGGTATAATAAAGGTGAT+TGG 0.391873 1.3:-68982232 MS.gene49118:intron
ACCCATATGGCGGGAAAGAT+TGG 0.391956 1.3:+68982549 None:intergenic
GAGGCATCTTGCAAGTTCAT+TGG 0.404865 1.3:+68982713 None:intergenic
CCACTAATTCCCTTCACTTG+TGG 0.410260 1.3:+68981999 None:intergenic
CAGGTATAATAAAGGTGATT+GGG 0.427139 1.3:-68982231 MS.gene49118:CDS
TACAGCAAATGGGGTGCATA+TGG 0.428773 1.3:-68982765 MS.gene49118:CDS
ACAGGAGCATCCAGTGGTAT+TGG 0.435914 1.3:-68984254 MS.gene49118:intron
TTACGCAACAGGTATAATAA+AGG 0.438898 1.3:-68982239 MS.gene49118:intron
GCATCCGAATTTAATTCCTC+TGG 0.439216 1.3:-68984062 MS.gene49118:CDS
TGTATACAGTTACAGCAAAT+GGG 0.440853 1.3:-68982775 MS.gene49118:intron
CGCCATATGGGTGTACTTGA+CGG 0.445799 1.3:-68982538 MS.gene49118:intron
ACAAAATTAATGACCAATCA+AGG 0.448930 1.3:-68982922 MS.gene49118:intron
TTACATCTTGATCAGGATGA+TGG 0.449048 1.3:-68982616 MS.gene49118:intron
ATGTGGCCATTCAGCAAGAA+AGG 0.469855 1.3:-68984624 MS.gene49118:CDS
GAAACCCCTTTCTTGCTGAA+TGG 0.470036 1.3:+68984618 None:intergenic
TCTTACATCAAGATGTTCAA+TGG 0.471739 1.3:+68984035 None:intergenic
AAGACCAGAGGAATTAAATT+CGG 0.474997 1.3:+68984058 None:intergenic
AGATTGGTGAGAATGATTCC+TGG 0.477751 1.3:+68982565 None:intergenic
CCACAAGTGAAGGGAATTAG+TGG 0.477838 1.3:-68981999 MS.gene49118:CDS
TTCATTGGCATGTAAAATGT+TGG 0.478897 1.3:+68982728 None:intergenic
ACTCATGGAATTGATGCAAC+TGG 0.489575 1.3:-68984561 MS.gene49118:CDS
TTGTCTTTGGACAGCATGAA+AGG 0.496194 1.3:+68983264 None:intergenic
CTCAGCTAAAATAGATGTCA+TGG 0.499752 1.3:-68984123 MS.gene49118:CDS
TGTGGCCATTCAGCAAGAAA+GGG 0.508330 1.3:-68984623 MS.gene49118:CDS
ACCAATCTTTCCCGCCATAT+GGG 0.511754 1.3:-68982550 MS.gene49118:CDS
GGCCTCACTGCTATTGTCAC+TGG 0.512117 1.3:-68984540 MS.gene49118:intron
GCACATGAAAGTAAGAAAGA+AGG 0.529008 1.3:-68983007 MS.gene49118:CDS
TACCGTCAAGTACACCCATA+TGG 0.533410 1.3:+68982536 None:intergenic
ATTGTGAATTCTCTTCATCC+AGG 0.539076 1.3:-68982583 MS.gene49118:CDS
TGATTTGGCTAAGAATCTAT+GGG 0.545121 1.3:-68981922 MS.gene49118:CDS
AGCATTGCACCCACAAGTGA+AGG 0.549189 1.3:-68982009 MS.gene49118:CDS
ACTGCTGAACAAGTTACTCA+TGG 0.551436 1.3:-68984576 MS.gene49118:CDS
TGTCTTTGGACAGCATGAAA+GGG 0.554321 1.3:+68983265 None:intergenic
GTAATTGCAAGAAACAATGC+AGG 0.558972 1.3:-68983300 MS.gene49118:intron
TACATCTTGATCAGGATGAT+GGG 0.560641 1.3:-68982615 MS.gene49118:intron
AAAACAAGATCACAGGGAAG+GGG 0.572694 1.3:-68981948 MS.gene49118:CDS
TACATATTTACATATCCTGA+AGG 0.576220 1.3:-68982956 MS.gene49118:CDS
GTCAAGTACACCCATATGGC+GGG 0.577914 1.3:+68982540 None:intergenic
AGTCTCAACTCCAATACCAC+TGG 0.581087 1.3:+68984244 None:intergenic
AAGGGGTTTCTGGATTCTCA+GGG 0.585889 1.3:-68984605 MS.gene49118:CDS
ATGCGTGTTCTTGCTTTGCG+TGG 0.595996 1.3:-68984221 MS.gene49118:CDS
TATCAAAGAAGCAATACTGA+AGG 0.612664 1.3:-68984153 MS.gene49118:CDS
TGAACTTGCAAGATGCCTCA+AGG 0.616025 1.3:-68982709 MS.gene49118:intron
TTCTAACAGCCATAATCACA+TGG 0.621462 1.3:+68984195 None:intergenic
GCATTGCACCCACAAGTGAA+GGG 0.624705 1.3:-68982008 MS.gene49118:CDS
TCTTGATCAGGATGATGGGG+TGG 0.624894 1.3:-68982611 MS.gene49118:intron
CAATGCTACATAGCATGTTG+TGG 0.627328 1.3:+68982025 None:intergenic
GTGGCCATTCAGCAAGAAAG+GGG 0.627372 1.3:-68984622 MS.gene49118:CDS
CGTCAAGTACACCCATATGG+CGG 0.638805 1.3:+68982539 None:intergenic
GTATACAGTTACAGCAAATG+GGG 0.659776 1.3:-68982774 MS.gene49118:intron
GATGTTCAATGGAAGACCAG+AGG 0.666537 1.3:+68984046 None:intergenic
ACATCTTGATCAGGATGATG+GGG 0.677424 1.3:-68982614 MS.gene49118:intron
ATGGTAACAGGAGCATCCAG+TGG 0.683391 1.3:-68984260 MS.gene49118:intron
ATATTTCCCACATACCTAGG+TGG 0.684024 1.3:+68983217 None:intergenic
GACCAGTGACAATAGCAGTG+AGG 0.746778 1.3:+68984538 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACATAACTTAATTATAT+AGG + chr1.3:68983346-68983365 None:intergenic 10.0%
!! CAAAATAAATAGTAAATAAA+AGG + chr1.3:68983102-68983121 None:intergenic 10.0%
!!! CTTTAAAAAAATATATTTTG+AGG + chr1.3:68983034-68983053 None:intergenic 10.0%
!! ATAATCTTGAAGTTAAATTA+TGG + chr1.3:68982126-68982145 None:intergenic 15.0%
!!! AAATTATTTTATGGATATGA+TGG - chr1.3:68982230-68982249 MS.gene49118:CDS 15.0%
!!! TTTTCTGTTAACATTAAAAA+AGG + chr1.3:68982617-68982636 None:intergenic 15.0%
!! AAAACTTTAGATTAAGTTAG+AGG + chr1.3:68982564-68982583 None:intergenic 20.0%
!! TATCATTCATCTACATTTAT+AGG - chr1.3:68984144-68984163 MS.gene49118:CDS 20.0%
!! TATTACTCTTTCTTACTATT+TGG - chr1.3:68982006-68982025 MS.gene49118:CDS 20.0%
!! TCATTGAACAATATATGATA+AGG + chr1.3:68982756-68982775 None:intergenic 20.0%
!! TGTAAATTATGTAATTGTAC+AGG - chr1.3:68983438-68983457 MS.gene49118:intron 20.0%
!!! ACTTAATTATATAGGTTGAT+TGG + chr1.3:68983338-68983357 None:intergenic 20.0%
!!! GAATTTTATGTAAAATCACA+CGG + chr1.3:68982193-68982212 None:intergenic 20.0%
!!! GGCTATGATAAATTATTTTA+TGG - chr1.3:68982221-68982240 MS.gene49118:CDS 20.0%
!!! GTTAACAGAAAAACTTTTTA+TGG - chr1.3:68982625-68982644 MS.gene49118:intron 20.0%
!!! TTTGTTTTTTTGTGTAAAAC+TGG - chr1.3:68983842-68983861 MS.gene49118:intron 20.0%
! AATCAGTTCAAATAAATGTG+AGG - chr1.3:68984342-68984361 MS.gene49118:intron 25.0%
! ACAAAATTAATGACCAATCA+AGG - chr1.3:68983592-68983611 MS.gene49118:intron 25.0%
! AGGATCAGTTCAAATAAAAT+TGG - chr1.3:68984362-68984381 MS.gene49118:intron 25.0%
! CATGATCAAGAAAGATAAAA+TGG + chr1.3:68983187-68983206 None:intergenic 25.0%
! CGTGTTGAAACTTTAAATTA+AGG - chr1.3:68982876-68982895 MS.gene49118:intron 25.0%
! TAAGAATGAAAGTTAGTTGA+AGG - chr1.3:68982807-68982826 MS.gene49118:intron 25.0%
! TACATATTTACATATCCTGA+AGG - chr1.3:68983558-68983577 MS.gene49118:intron 25.0%
! TTACATAAAATTCTTGCAAC+TGG - chr1.3:68982200-68982219 MS.gene49118:intron 25.0%
! TTTACTAAATGCTTAAACTG+TGG - chr1.3:68983388-68983407 MS.gene49118:intron 25.0%
! TTTCAGCATGAATTTGATTA+AGG - chr1.3:68984616-68984635 MS.gene49118:CDS 25.0%
! TTTGAACTTATGTTACCTAT+CGG + chr1.3:68983630-68983649 None:intergenic 25.0%
!! ATTTTATGGATATGATGGTA+TGG - chr1.3:68982235-68982254 MS.gene49118:intron 25.0%
!! GGTCATTAATTTTGTCAAAA+CGG + chr1.3:68983587-68983606 None:intergenic 25.0%
!! TGTAAATATGTAAGCTTTTG+CGG + chr1.3:68983550-68983569 None:intergenic 25.0%
!! TGTCATTACTACACATTTTA+TGG + chr1.3:68984215-68984234 None:intergenic 25.0%
AAGACCAGAGGAATTAAATT+CGG + chr1.3:68982459-68982478 None:intergenic 30.0%
ACAGGTATAATAAAGGTGAT+TGG - chr1.3:68984282-68984301 MS.gene49118:intron 30.0%
ACTTTCTCCTATCTAAATGT+AGG - chr1.3:68984460-68984479 MS.gene49118:intron 30.0%
ATGAAGAATTAAGAGTGGAA+AGG - chr1.3:68983695-68983714 MS.gene49118:intron 30.0%
CAGGTATAATAAAGGTGATT+GGG - chr1.3:68984283-68984302 MS.gene49118:intron 30.0%
CTTAATTCTTCATGCAACTA+AGG + chr1.3:68983688-68983707 None:intergenic 30.0%
CTTTCTCCTATCTAAATGTA+GGG - chr1.3:68984461-68984480 MS.gene49118:intron 30.0%
GAACATCTTGATGTAAGAAA+AGG - chr1.3:68982484-68982503 MS.gene49118:intron 30.0%
GATTATGGCTGTTAGAAATA+AGG - chr1.3:68982325-68982344 MS.gene49118:intron 30.0%
TATCAAAGAAGCAATACTGA+AGG - chr1.3:68982361-68982380 MS.gene49118:intron 30.0%
TCTTACATCAAGATGTTCAA+TGG + chr1.3:68982482-68982501 None:intergenic 30.0%
TGAAGGCTGTAAACATAAAA+GGG - chr1.3:68982824-68982843 MS.gene49118:intron 30.0%
TGTATACAGTTACAGCAAAT+GGG - chr1.3:68983739-68983758 MS.gene49118:intron 30.0%
TTACGCAACAGGTATAATAA+AGG - chr1.3:68984275-68984294 MS.gene49118:intron 30.0%
TTCATTGGCATGTAAAATGT+TGG + chr1.3:68983789-68983808 None:intergenic 30.0%
TTGAAGGCTGTAAACATAAA+AGG - chr1.3:68982823-68982842 MS.gene49118:intron 30.0%
TTGTATACAGTTACAGCAAA+TGG - chr1.3:68983738-68983757 MS.gene49118:intron 30.0%
! AATTAAGGTCTCGTTTGTTT+TGG - chr1.3:68982891-68982910 MS.gene49118:intron 30.0%
! ATTTAGAATGTCATGTCACA+GGG + chr1.3:68984059-68984078 None:intergenic 30.0%
! GATTTGGTTATTACCTTGAT+TGG + chr1.3:68983608-68983627 None:intergenic 30.0%
! TCTCTTGACAAATCTTTTGT+TGG - chr1.3:68983467-68983486 MS.gene49118:intron 30.0%
! TGATTTGGCTAAGAATCTAT+GGG - chr1.3:68984592-68984611 MS.gene49118:CDS 30.0%
! TTACTTGTTACATCTTGATC+AGG - chr1.3:68983891-68983910 MS.gene49118:intron 30.0%
! TTATGTTTGATTTACGCAAC+AGG - chr1.3:68984264-68984283 MS.gene49118:intron 30.0%
!! ATTTGCTGTAACTGTATACA+AGG + chr1.3:68983739-68983758 None:intergenic 30.0%
!! GTATTTTTCAGAGAGTAATG+TGG - chr1.3:68984541-68984560 MS.gene49118:CDS 30.0%
!!! ATAGGTGTTTTATTTGCACA+TGG - chr1.3:68984162-68984181 MS.gene49118:CDS 30.0%
!!! ATGACATCTATTTTAGCTGA+GGG + chr1.3:68982392-68982411 None:intergenic 30.0%
!!! GGGAAATATGTTTGGTTTTA+AGG - chr1.3:68983311-68983330 MS.gene49118:intron 30.0%
AAAAACAAGATCACAGGGAA+GGG - chr1.3:68984565-68984584 MS.gene49118:CDS 35.0%
AAATGGAACACAGATACTCA+TGG + chr1.3:68983170-68983189 None:intergenic 35.0%
AACATATTTCCCACATACCT+AGG + chr1.3:68983303-68983322 None:intergenic 35.0%
AAGAATTAAGAGTGGAAAGG+TGG - chr1.3:68983698-68983717 MS.gene49118:intron 35.0%
ACAAATGCACCCTAAGTTAA+AGG - chr1.3:68983059-68983078 MS.gene49118:intron 35.0%
AGGTAATAACCAAATCCGAT+AGG - chr1.3:68983612-68983631 MS.gene49118:intron 35.0%
AGGTATGTGGGAAATATGTT+TGG - chr1.3:68983303-68983322 MS.gene49118:intron 35.0%
ATAAAAGGCAAATCTGCACA+TGG + chr1.3:68983087-68983106 None:intergenic 35.0%
ATAAAAGGGTAACTTGACAC+GGG - chr1.3:68982838-68982857 MS.gene49118:intron 35.0%
ATGCAGTTCAATGTTGTCTT+TGG + chr1.3:68983266-68983285 None:intergenic 35.0%
ATTGTGAATTCTCTTCATCC+AGG - chr1.3:68983931-68983950 MS.gene49118:intron 35.0%
CATAAAAGGGTAACTTGACA+CGG - chr1.3:68982837-68982856 MS.gene49118:intron 35.0%
CATTATCTACCGATGTTATG+TGG - chr1.3:68984091-68984110 MS.gene49118:CDS 35.0%
CCTGGATAAAAAATGATCCT+GGG + chr1.3:68982523-68982542 None:intergenic 35.0%
CTCAGCTAAAATAGATGTCA+TGG - chr1.3:68982391-68982410 MS.gene49118:intron 35.0%
CTGTAACTGTATACAAGGAA+GGG + chr1.3:68983734-68983753 None:intergenic 35.0%
CTTATGTTACCTATCGGATT+TGG + chr1.3:68983624-68983643 None:intergenic 35.0%
CTTGATGTAAGAAAAGGAAC+TGG - chr1.3:68982490-68982509 MS.gene49118:intron 35.0%
GCACATGAAAGTAAGAAAGA+AGG - chr1.3:68983507-68983526 MS.gene49118:intron 35.0%
GTAATTGCAAGAAACAATGC+AGG - chr1.3:68983214-68983233 MS.gene49118:intron 35.0%
GTATACAGTTACAGCAAATG+GGG - chr1.3:68983740-68983759 MS.gene49118:intron 35.0%
GTTGCATGAAGAATTAAGAG+TGG - chr1.3:68983690-68983709 MS.gene49118:intron 35.0%
TAAAAGGCAAATCTGCACAT+GGG + chr1.3:68983086-68983105 None:intergenic 35.0%
TACATCTTGATCAGGATGAT+GGG - chr1.3:68983899-68983918 MS.gene49118:intron 35.0%
TGTGATGAAAAATGTTCAGC+AGG - chr1.3:68984311-68984330 MS.gene49118:intron 35.0%
TTACATCTTGATCAGGATGA+TGG - chr1.3:68983898-68983917 MS.gene49118:intron 35.0%
TTCTAACAGCCATAATCACA+TGG + chr1.3:68982322-68982341 None:intergenic 35.0%
! CATTTAGAATGTCATGTCAC+AGG + chr1.3:68984060-68984079 None:intergenic 35.0%
! GACACAGTATCTGAGTTTTA+TGG - chr1.3:68984231-68984250 MS.gene49118:CDS 35.0%
!! CTGATTTGGCTAAGAATCTA+TGG - chr1.3:68984591-68984610 MS.gene49118:CDS 35.0%
!!! CATGACATCTATTTTAGCTG+AGG + chr1.3:68982393-68982412 None:intergenic 35.0%
AAAACAAGATCACAGGGAAG+GGG - chr1.3:68984566-68984585 MS.gene49118:CDS 40.0%
ACATCTTGATCAGGATGATG+GGG - chr1.3:68983900-68983919 MS.gene49118:intron 40.0%
ACGATAGTGCCACATAACAT+CGG + chr1.3:68984103-68984122 None:intergenic 40.0%
ACTCATGGAATTGATGCAAC+TGG - chr1.3:68981953-68981972 MS.gene49118:CDS 40.0%
ACTGCTGAACAAGTTACTCA+TGG - chr1.3:68981938-68981957 MS.gene49118:CDS 40.0%
AGATTGGTGAGAATGATTCC+TGG + chr1.3:68983952-68983971 None:intergenic 40.0%
ATATTTCCCACATACCTAGG+TGG + chr1.3:68983300-68983319 None:intergenic 40.0%
CAAAAACAAGATCACAGGGA+AGG - chr1.3:68984564-68984583 MS.gene49118:CDS 40.0%
CAATGCTACATAGCATGTTG+TGG + chr1.3:68984492-68984511 None:intergenic 40.0%
CACTAATTCCCTTCACTTGT+GGG + chr1.3:68984517-68984536 None:intergenic 40.0%
CTGCTGAAATTTGCATAGTC+AGG - chr1.3:68982148-68982167 MS.gene49118:intron 40.0%
GCATCCGAATTTAATTCCTC+TGG - chr1.3:68982452-68982471 MS.gene49118:intron 40.0%
GCCTGGATAAAAAATGATCC+TGG + chr1.3:68982524-68982543 None:intergenic 40.0%
GCTGTAACTGTATACAAGGA+AGG + chr1.3:68983735-68983754 None:intergenic 40.0%
GGAGTTAGATCTCAGTTCAT+TGG - chr1.3:68982412-68982431 MS.gene49118:intron 40.0%
GGATATGATGGTATGGTAAC+AGG - chr1.3:68982242-68982261 MS.gene49118:intron 40.0%
GTGGCAAAAACAAGATCACA+GGG - chr1.3:68984560-68984579 MS.gene49118:CDS 40.0%
TAAAAGGGTAACTTGACACG+GGG - chr1.3:68982839-68982858 MS.gene49118:intron 40.0%
TACAAACCACCTAGGTATGT+GGG - chr1.3:68983291-68983310 MS.gene49118:CDS 40.0%
TATGATAAGGAAACCCCCAA+TGG + chr1.3:68982743-68982762 None:intergenic 40.0%
TCAGATTCGAATCCTTCTGT+GGG + chr1.3:68982669-68982688 None:intergenic 40.0%
TGTAAGAAAAGGAACTGGCT+TGG - chr1.3:68982495-68982514 MS.gene49118:intron 40.0%
TGTCTTTGGACAGCATGAAA+GGG + chr1.3:68983252-68983271 None:intergenic 40.0%
TGTGGCAAAAACAAGATCAC+AGG - chr1.3:68984559-68984578 MS.gene49118:CDS 40.0%
TTGTCTTTGGACAGCATGAA+AGG + chr1.3:68983253-68983272 None:intergenic 40.0%
! CACATGGGTCCTTTAACTTA+GGG + chr1.3:68983071-68983090 None:intergenic 40.0%
! CATTTTGCTACAAACCACCT+AGG - chr1.3:68983283-68983302 MS.gene49118:CDS 40.0%
! TTCGAATCTGAGACTTTGAG+AGG - chr1.3:68982678-68982697 MS.gene49118:intron 40.0%
! TTGTCAAAACGGATTCCTTC+AGG + chr1.3:68983576-68983595 None:intergenic 40.0%
!!! CCCAGGATCATTTTTTATCC+AGG - chr1.3:68982520-68982539 MS.gene49118:intron 40.0%
ACCAATCTTTCCCGCCATAT+GGG - chr1.3:68983964-68983983 MS.gene49118:intron 45.0%
AGAGAAACTAGCACACCTTG+AGG + chr1.3:68983823-68983842 None:intergenic 45.0%
AGTCTCAACTCCAATACCAC+TGG + chr1.3:68982273-68982292 None:intergenic 45.0%
ATAAGGAAACCCCCAATGGT+TGG + chr1.3:68982739-68982758 None:intergenic 45.0%
ATGTGGCCATTCAGCAAGAA+AGG - chr1.3:68981890-68981909 MS.gene49118:CDS 45.0%
CCACAAGTGAAGGGAATTAG+TGG - chr1.3:68984515-68984534 MS.gene49118:intron 45.0%
CCACTAATTCCCTTCACTTG+TGG + chr1.3:68984518-68984537 None:intergenic 45.0%
CTACAAACCACCTAGGTATG+TGG - chr1.3:68983290-68983309 MS.gene49118:CDS 45.0%
CTCAGATTCGAATCCTTCTG+TGG + chr1.3:68982670-68982689 None:intergenic 45.0%
GAAACCCCTTTCTTGCTGAA+TGG + chr1.3:68981899-68981918 None:intergenic 45.0%
GATGTTATGTGGCACTATCG+TGG - chr1.3:68984102-68984121 MS.gene49118:CDS 45.0%
GATGTTCAATGGAAGACCAG+AGG + chr1.3:68982471-68982490 None:intergenic 45.0%
GCTGCACCCTACATTTAGAT+AGG + chr1.3:68984470-68984489 None:intergenic 45.0%
TACAGCAAATGGGGTGCATA+TGG - chr1.3:68983749-68983768 MS.gene49118:intron 45.0%
TACCGTCAAGTACACCCATA+TGG + chr1.3:68983981-68984000 None:intergenic 45.0%
TATCCAGGCAAAACTGCACT+AGG - chr1.3:68982535-68982554 MS.gene49118:intron 45.0%
TGAACTTGCAAGATGCCTCA+AGG - chr1.3:68983805-68983824 MS.gene49118:intron 45.0%
TGTGGCCATTCAGCAAGAAA+GGG - chr1.3:68981891-68981910 MS.gene49118:CDS 45.0%
TTCAGCAAGAAAGGGGTTTC+TGG - chr1.3:68981899-68981918 MS.gene49118:CDS 45.0%
TTTGAGAGGAGCTCACTTCA+AGG - chr1.3:68982692-68982711 MS.gene49118:intron 45.0%
! AAAGGGGTTTCTGGATTCTC+AGG - chr1.3:68981908-68981927 MS.gene49118:CDS 45.0%
! AAGGGGTTTCTGGATTCTCA+GGG - chr1.3:68981909-68981928 MS.gene49118:CDS 45.0%
! AATCCTAGTGCAGTTTTGCC+TGG + chr1.3:68982541-68982560 None:intergenic 45.0%
! GAGGCATCTTGCAAGTTCAT+TGG + chr1.3:68983804-68983823 None:intergenic 45.0%
! GCACATGGGTCCTTTAACTT+AGG + chr1.3:68983072-68983091 None:intergenic 45.0%
ACACCTCTAGGCCAACCATT+GGG - chr1.3:68982725-68982744 MS.gene49118:CDS 50.0%
AGCATTGCACCCACAAGTGA+AGG - chr1.3:68984505-68984524 MS.gene49118:intron 50.0%
ATGCGTGTTCTTGCTTTGCG+TGG - chr1.3:68982293-68982312 MS.gene49118:intron 50.0%
CACCAATCTTTCCCGCCATA+TGG - chr1.3:68983963-68983982 MS.gene49118:intron 50.0%
CGCCATATGGGTGTACTTGA+CGG - chr1.3:68983976-68983995 MS.gene49118:intron 50.0%
CGTCAAGTACACCCATATGG+CGG + chr1.3:68983978-68983997 None:intergenic 50.0%
CTTCTGTGGGCAACTTCTGT+GGG + chr1.3:68982656-68982675 None:intergenic 50.0%
GACCAGTGACAATAGCAGTG+AGG + chr1.3:68981979-68981998 None:intergenic 50.0%
GCATTGCACCCACAAGTGAA+GGG - chr1.3:68984506-68984525 MS.gene49118:intron 50.0%
GCGTGGTGTCCATGTGATTA+TGG - chr1.3:68982310-68982329 MS.gene49118:intron 50.0%
GGTCTTAAGCCTACACCTCT+AGG - chr1.3:68982713-68982732 MS.gene49118:CDS 50.0%
GTCAAGTACACCCATATGGC+GGG + chr1.3:68983977-68983996 None:intergenic 50.0%
GTGGCCATTCAGCAAGAAAG+GGG - chr1.3:68981892-68981911 MS.gene49118:CDS 50.0%
TACACCTCTAGGCCAACCAT+TGG - chr1.3:68982724-68982743 MS.gene49118:CDS 50.0%
! ACCCATATGGCGGGAAAGAT+TGG + chr1.3:68983968-68983987 None:intergenic 50.0%
!! AATGGTTGGCCTAGAGGTGT+AGG + chr1.3:68982725-68982744 None:intergenic 50.0%
!! ACAGGAGCATCCAGTGGTAT+TGG - chr1.3:68982260-68982279 MS.gene49118:intron 50.0%
!! ATGGTAACAGGAGCATCCAG+TGG - chr1.3:68982254-68982273 MS.gene49118:intron 50.0%
!! TCTTGATCAGGATGATGGGG+TGG - chr1.3:68983903-68983922 MS.gene49118:intron 50.0%
ACCTCTAGGCCAACCATTGG+GGG - chr1.3:68982727-68982746 MS.gene49118:CDS 55.0%
CACCTCTAGGCCAACCATTG+GGG - chr1.3:68982726-68982745 MS.gene49118:CDS 55.0%
CCACAGAAGTTGCCCACAGA+AGG - chr1.3:68982654-68982673 MS.gene49118:intron 55.0%
CCTTCTGTGGGCAACTTCTG+TGG + chr1.3:68982657-68982676 None:intergenic 55.0%
GGCCTCACTGCTATTGTCAC+TGG - chr1.3:68981974-68981993 MS.gene49118:CDS 55.0%
!! AAGGAACTGGCTTGGATCCC+AGG - chr1.3:68982503-68982522 MS.gene49118:intron 55.0%
!! ACAGGGAAGGGGCGCTGATT+TGG - chr1.3:68984577-68984596 MS.gene49118:CDS 60.0%
!! ACCCCCAATGGTTGGCCTAG+AGG + chr1.3:68982731-68982750 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 68981890 68984646 68981890 ID=MS.gene49118
chr1.3 mRNA 68981890 68984646 68981890 ID=MS.gene49118.t1;Parent=MS.gene49118
chr1.3 exon 68984541 68984646 68984541 ID=MS.gene49118.t1.exon1;Parent=MS.gene49118.t1
chr1.3 CDS 68984541 68984646 68984541 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68984041 68984272 68984041 ID=MS.gene49118.t1.exon2;Parent=MS.gene49118.t1
chr1.3 CDS 68984041 68984272 68984041 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68983232 68983311 68983232 ID=MS.gene49118.t1.exon3;Parent=MS.gene49118.t1
chr1.3 CDS 68983232 68983311 68983232 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68982923 68983076 68982923 ID=MS.gene49118.t1.exon4;Parent=MS.gene49118.t1
chr1.3 CDS 68982923 68983076 68982923 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68982710 68982788 68982710 ID=MS.gene49118.t1.exon5;Parent=MS.gene49118.t1
chr1.3 CDS 68982710 68982788 68982710 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68982539 68982623 68982539 ID=MS.gene49118.t1.exon6;Parent=MS.gene49118.t1
chr1.3 CDS 68982539 68982623 68982539 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68982204 68982250 68982204 ID=MS.gene49118.t1.exon7;Parent=MS.gene49118.t1
chr1.3 CDS 68982204 68982250 68982204 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
chr1.3 exon 68981890 68982054 68981890 ID=MS.gene49118.t1.exon8;Parent=MS.gene49118.t1
chr1.3 CDS 68981890 68982054 68981890 ID=cds.MS.gene49118.t1;Parent=MS.gene49118.t1
Gene Sequence

>MS.gene49118

ATGTGGCCATTCAGCAAGAAAGGGGTTTCTGGATTCTCAGGGAGTTCAACTGCTGAACAAGTTACTCATGGAATTGATGCAACTGGCCTCACTGCTATTGTCACTGGTCTATCTTCTATTACTCTTTCTTACTATTTGGAATTATTAGTCTGTATGTATGTATATATGTAGCTTTTCATCACTTAGACTTGAGAAGTGATTAACAAGCTTTTTAATGATCTTTGTAGTTGACTCCATAATTTAACTTCAAGATTATTGCTGCTGAAATTTGCATAGTCAGGATTTATTTGTTTATATATTCCGTGTGATTTTACATAAAATTCTTGCAACTGGCTATGATAAATTATTTTATGGATATGATGGTATGGTAACAGGAGCATCCAGTGGTATTGGAGTTGAGACTATGCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGCTGTTAGAAATAAGGTTGCTGCTAATGATATCAAAGAAGCAATACTGAAGGAGATTCCCTCAGCTAAAATAGATGTCATGGAGTTAGATCTCAGTTCATTGGAATCTGTCAAGAAATTTGCATCCGAATTTAATTCCTCTGGTCTTCCATTGAACATCTTGATGTAAGAAAAGGAACTGGCTTGGATCCCAGGATCATTTTTTATCCAGGCAAAACTGCACTAGGATTCCTCTAACTTAATCTAAAGTTTTAAATGAGTCTTATTTTCGTGTCAAATTAGTCCTTTTTTAATGTTAACAGAAAAACTTTTTATGGACTAGCCCACAGAAGTTGCCCACAGAAGGATTCGAATCTGAGACTTTGAGAGGAGCTCACTTCAAGGTCTTAAGCCTACACCTCTAGGCCAACCATTGGGGGTTTCCTTATCATATATTGTTCAATGATCGTGTACACAAATTTGTAACAAAAGTAAACTAAGAATGAAAGTTAGTTGAAGGCTGTAAACATAAAAGGGTAACTTGACACGGGGAAAAAGATAAAAGACGTGTTGAAACTTTAAATTAAGGTCTCGTTTGTTTTGGATTTTTTTGAAAAAAAATCTATTTTTTTTAACTAAAAAATCACTTTTATTTATTTATTTTTGTAGTGTTTGTTTTAGATTCTTAAAAAATTCATTTTGTTAAAAAAATCATTTTTAGCCTCAAAATATATTTTTTTAAAGCTGAAACAAATGCACCCTAAGTTAAAGGACCCATGTGCAGATTTGCCTTTTATTTACTATTTATTTTGACTGCTAGATTTTTATTGAAGTTGTTAATTACTTGTTCTCTCTTACCATGAGTATCTGTGTTCCATTTTATCTTTCTTGATCATGTTCATTTGTAATTGCAAGAAACAATGCAGGAATCATGTTATGCCCTTTCATGCTGTCCAAAGACAACATTGAACTGCATTTTGCTACAAACCACCTAGGTATGTGGGAAATATGTTTGGTTTTAAGGTCCAATCAACCTATATAATTAAGTTATGTTTTATATAAAACATCAAGTAATTATTTTACTAAATGCTTAAACTGTGGAGATGTGATCATTCTGTTTTTATGTAATGTAAATTATGTAATTGTACAGGTCATTTTCTCTTGACAAATCTTTTGTTGGACACAATGAAGAAAACAGCACATGAAAGTAAGAAAGAAGGAAGAATTGTCAATGTCTCCGCAAAAGCTTACATATTTACATATCCTGAAGGAATCCGTTTTGACAAAATTAATGACCAATCAAGGTAATAACCAAATCCGATAGGTAACATAAGTTCAAATCATGACAAGATGTGCTGTTAGCACAATTGTCTCACCTTAGTTGCATGAAGAATTAAGAGTGGAAAGGTGGTAAATATGTTCCCTTCCTTGTATACAGTTACAGCAAATGGGGTGCATATGGACAGTCAAAGCTTGCCAACATTTTACATGCCAATGAACTTGCAAGATGCCTCAAGGTGTGCTAGTTTCTCTTTGTTTTTTTGTGTAAAACTGGTTCTTTGTTTTGATATATTTATAACATTACTTGTTACATCTTGATCAGGATGATGGGGTGGATATCATTGTGAATTCTCTTCATCCAGGAATCATTCTCACCAATCTTTCCCGCCATATGGGTGTACTTGACGGTAACTATTATCTTGTATCATTCATCTCAATTCATGATTTGTCTATAAATTATTAAAGCCCTGTGACATGACATTCTAAATGATTTTTTTCTGCATTATCTACCGATGTTATGTGGCACTATCGTGGATTTTACAACGAGACAAGCTATCATTCATCTACATTTATAGGTGTTTTATTTGCACATGGCACTCTACAACACTAGCACTCTAGTGTCCATAAAATGTGTAGTAATGACACAGTATCTGAGTTTTATGGATATTGCTACTTATGTTTGATTTACGCAACAGGTATAATAAAGGTGATTGGGAAACTTGTGATGAAAAATGTTCAGCAGGTATGTCATAATCAGTTCAAATAAATGTGAGGATCAGTTCAAATAAAATTGGTTGTTGTAAACTAAACATAGATTAGAAGATTTCTGATATTTCATTTTTCTTAGCTTAGTAGTCAGTTTCATGTTAACTTTCTCCTATCTAAATGTAGGGTGCAGCCACAACATGCTATGTAGCATTGCACCCACAAGTGAAGGGAATTAGTGGTGAGTATTTTTCAGAGAGTAATGTGGCAAAAACAAGATCACAGGGAAGGGGCGCTGATTTGGCTAAGAATCTATGGGATTTCAGCATGAATTTGATTAAGGACAAATAG

Protein sequence

>MS.gene49118.t1

MWPFSKKGVSGFSGSSTAEQVTHGIDATGLTAIVTGASSGIGVETMRVLALRGVHVIMAVRNKVAANDIKEAILKEIPSAKIDVMELDLSSLESVKKFASEFNSSGLPLNILINNAGIMLCPFMLSKDNIELHFATNHLGHFLLTNLLLDTMKKTAHESKKEGRIVNVSAKAYIFTYPEGIRFDKINDQSSYSKWGAYGQSKLANILHANELARCLKDDGVDIIVNSLHPGIILTNLSRHMGVLDGIIKVIGKLVMKNVQQGAATTCYVALHPQVKGISGEYFSESNVAKTRSQGRGADLAKNLWDFSMNLIKDK