AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene09134


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09134.t1 MTR_4g057240 98.544 206 3 0 1 206 1 206 3.04e-147 407
MS.gene09134.t1 MTR_7g114240 68.919 148 46 0 56 203 3 150 6.10e-71 213
MS.gene09134.t1 MTR_6g029200 60.403 149 58 1 56 203 9 157 1.26e-57 179
MS.gene09134.t1 MTR_6g029200 61.111 144 53 1 63 203 4 147 3.29e-56 175
MS.gene09134.t1 MTR_7g114240 63.366 101 37 0 56 156 3 103 1.27e-41 137
MS.gene09134.t1 MTR_4g101820 35.537 121 67 4 57 176 157 267 2.54e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene09134.t1 AT2G28190 72.986 211 48 2 3 206 8 216 1.65e-102 295
MS.gene09134.t1 AT1G08830 66.892 148 49 0 56 203 3 150 3.20e-67 203
MS.gene09134.t1 AT1G08830 66.892 148 49 0 56 203 3 150 3.20e-67 203
MS.gene09134.t1 AT5G18100 60.135 148 59 0 56 203 9 156 4.63e-61 188
MS.gene09134.t1 AT5G18100 58.730 126 52 0 56 181 9 134 1.49e-48 155
MS.gene09134.t1 AT1G12520 37.190 121 67 3 57 177 28 139 1.74e-14 68.9
MS.gene09134.t1 AT1G12520 37.190 121 67 3 57 177 164 275 4.71e-14 69.7
MS.gene09134.t1 AT1G12520 37.190 121 67 3 57 177 73 184 5.30e-14 68.6

Find 68 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACTGCAACAGCTTTCT+TGG 0.257195 4.1:-41011585 None:intergenic
GGCCTTACTCCAGGGCTTCA+TGG 0.278416 4.1:+41012436 MS.gene09134:CDS
AACGGAGAGAGGCTGGAATT+TGG 0.292602 4.1:-41011552 None:intergenic
GGCTCTCCCAATGACTGAAT+TGG 0.294518 4.1:-41013115 None:intergenic
GAAAGCTGTTGCAGTTCTTA+AGG 0.327591 4.1:+41011589 MS.gene09134:CDS
GCTCTCCCAATGACTGAATT+GGG 0.359785 4.1:-41013114 None:intergenic
GCATGACGGATTTCATCTTC+AGG 0.389426 4.1:-41012755 None:intergenic
TTTATCTTGCAGCACGAGTA+TGG 0.392047 4.1:+41012555 MS.gene09134:intron
AAAGCTGTTGCAGTTCTTAA+GGG 0.393106 4.1:+41011590 MS.gene09134:CDS
AGCGTTTGTAGCATTTATAC+TGG 0.397586 4.1:-41014791 None:intergenic
GGCAACAATCGTTGACAATC+AGG 0.399165 4.1:+41012912 MS.gene09134:CDS
CGTATCACTGGCCTTACTCC+AGG 0.406214 4.1:+41012427 MS.gene09134:CDS
GAGTGAGAAGTGAGTGGCGA+AGG 0.415982 4.1:-41011461 None:intergenic
ACTGGCCCCAATTCAGTCAT+TGG 0.417542 4.1:+41013108 MS.gene09134:CDS
CAGGAGCACCGTGTGTCAAC+TGG 0.432832 4.1:-41012736 None:intergenic
AATCCGTCATGCGGGTGACC+TGG 0.434387 4.1:+41012766 MS.gene09134:CDS
AACCATGAAGCCCTGGAGTA+AGG 0.443025 4.1:-41012438 None:intergenic
CAGCAACAACGGAGAGAGGC+TGG 0.455953 4.1:-41011559 None:intergenic
GCACCGTGTGTCAACTGGTT+AGG 0.459986 4.1:-41012731 None:intergenic
AGTCATTGGGAGAGCCTTAG+TGG 0.466496 4.1:+41013122 MS.gene09134:CDS
AAGGGTAACTCCACTGTTGA+AGG 0.471786 4.1:+41011608 MS.gene09134:CDS
CTGGCCCCAATTCAGTCATT+GGG 0.477587 4.1:+41013109 MS.gene09134:CDS
TTGATTGTTTCAGGTGTGGT+TGG 0.496252 4.1:+41014761 MS.gene09134:intron
CTTGAAGATGACCTTGGAAA+GGG 0.496504 4.1:+41013153 MS.gene09134:CDS
CATCAGCAATTATGTTTCCC+AGG 0.498669 4.1:-41012784 None:intergenic
ACAGTCAATGTTCGTATCAC+TGG 0.500510 4.1:+41012415 MS.gene09134:CDS
ATACGAACATTGACTGTTGT+TGG 0.508293 4.1:-41012409 None:intergenic
CTGGAATTTGGAACGCGAAA+GGG 0.512711 4.1:-41011540 None:intergenic
CTTCTCCGATCATCTTTCTC+CGG 0.517355 4.1:+41011485 MS.gene09134:CDS
GAGAGTGTGACGCCATTGTT+AGG 0.519424 4.1:-41011430 None:intergenic
ATCCGTCATGCGGGTGACCT+GGG 0.530041 4.1:+41012767 MS.gene09134:CDS
CGCGAAAGGGTTGAGAATTG+AGG 0.534704 4.1:-41011527 None:intergenic
AGTTTGAGCACTGGAAATGC+CGG 0.542289 4.1:+41013475 MS.gene09134:CDS
CATGAACTTAGTTTGAGCAC+TGG 0.549851 4.1:+41013466 MS.gene09134:CDS
GTATCACTGGCCTTACTCCA+GGG 0.550072 4.1:+41012428 MS.gene09134:CDS
AGGTGAAAACCATGAAGCCC+TGG 0.553380 4.1:-41012445 None:intergenic
ACCAATGGGTGTATCTCGAC+AGG 0.554865 4.1:+41012585 MS.gene09134:CDS
TTCAAGCTCATGAACCACTA+AGG 0.558296 4.1:-41013136 None:intergenic
CATGAGCTTGAAGATGACCT+TGG 0.559793 4.1:+41013147 MS.gene09134:CDS
GAAGATGAAATCCGTCATGC+GGG 0.564092 4.1:+41012758 MS.gene09134:CDS
GCTGGAATTTGGAACGCGAA+AGG 0.574919 4.1:-41011541 None:intergenic
ACCTGTCGAGATACACCCAT+TGG 0.575585 4.1:-41012586 None:intergenic
AGAGAGCTTGACGGAGACGC+CGG 0.577978 4.1:-41011504 None:intergenic
AGTAACAACACCTTCAACAG+TGG 0.579962 4.1:-41011618 None:intergenic
GCTTGAAGATGACCTTGGAA+AGG 0.581249 4.1:+41013152 MS.gene09134:CDS
GAATTGAGGAGAGAGCTTGA+CGG 0.581862 4.1:-41011513 None:intergenic
AACATAATTGCTGATGCCAA+CGG 0.589398 4.1:+41012791 MS.gene09134:CDS
GGATGAACTAACCCTTTCCA+AGG 0.593520 4.1:-41013164 None:intergenic
GAGTATGGTGATACCACCAA+TGG 0.595372 4.1:+41012570 MS.gene09134:CDS
AGTATGGTGATACCACCAAT+GGG 0.608769 4.1:+41012571 MS.gene09134:CDS
GTGAAACACAGGCGTTGCAG+AGG 0.609173 4.1:+41012891 MS.gene09134:intron
TTTCTTGGCAGCAGCAACAA+CGG 0.616837 4.1:-41011570 None:intergenic
GCAGCAGCAACAACGGAGAG+AGG 0.618791 4.1:-41011563 None:intergenic
TGTCGAGATACACCCATTGG+TGG 0.618804 4.1:-41012583 None:intergenic
CTCTCCCAATGACTGAATTG+GGG 0.619637 4.1:-41013113 None:intergenic
ACCACAGGCTAATCTTCCAC+CGG 0.621370 4.1:-41013494 None:intergenic
AATCTTCATGCACCTAACAA+TGG 0.624185 4.1:+41011418 None:intergenic
AATCCTAACCAGTTGACACA+CGG 0.627360 4.1:+41012728 MS.gene09134:CDS
TTCCCAGGTCACCCGCATGA+CGG 0.629118 4.1:-41012769 None:intergenic
TGAAGATGAAATCCGTCATG+CGG 0.631482 4.1:+41012757 MS.gene09134:CDS
ATCATGCAGATACCACTCAC+TGG 0.633823 4.1:+41013090 MS.gene09134:intron
AGACGCCGGAGAAAGATGAT+CGG 0.638557 4.1:-41011490 None:intergenic
TTGAGCACTGGAAATGCCGG+TGG 0.645778 4.1:+41013478 MS.gene09134:CDS
AGAAGAGAGTGAGAAGTGAG+TGG 0.648773 4.1:-41011467 None:intergenic
ACTGAATTGGGGCCAGTGAG+TGG 0.664251 4.1:-41013102 None:intergenic
GCCGGTGGAAGATTAGCCTG+TGG 0.696428 4.1:+41013493 MS.gene09134:CDS
ACTCTTACTCAAGAAAACGA+AGG 0.698943 4.1:+41011638 MS.gene09134:CDS
AACTGGTTAGGATTGAAATG+TGG 0.750548 4.1:-41012719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTAAATAAATATATAAAA+TGG - chr4.1:41013188-41013207 None:intergenic 0.0%
!! ATCTAATAATCTTATGAAAA+CGG - chr4.1:41012039-41012058 None:intergenic 15.0%
!! CAATAACATAATATTAATCT+AGG + chr4.1:41013897-41013916 MS.gene09134:intron 15.0%
!! TCGATATCTTTAAATTAAAA+GGG + chr4.1:41014027-41014046 MS.gene09134:intron 15.0%
!!! AAATATAAAGGTACAAAAAA+TGG - chr4.1:41012633-41012652 None:intergenic 15.0%
!!! AACTAAATAAACAATTTTGA+AGG - chr4.1:41012495-41012514 None:intergenic 15.0%
!!! ACTGTTTTAATATAATCTAT+AGG + chr4.1:41011944-41011963 MS.gene09134:intron 15.0%
!!! TTATTTTCCTCTAAAAAATA+TGG + chr4.1:41012529-41012548 MS.gene09134:intron 15.0%
!! AACATATAAGCATTTAAGTA+TGG - chr4.1:41013575-41013594 None:intergenic 20.0%
!! AATAATTGAAGATCATGAAA+AGG - chr4.1:41013552-41013571 None:intergenic 20.0%
!! AATGCATTATGAATCTTTAT+AGG + chr4.1:41011781-41011800 MS.gene09134:intron 20.0%
!! AGGTTATTATTATACAGTAA+GGG - chr4.1:41014352-41014371 None:intergenic 20.0%
!! ATCAATTATCGATAATAGTT+TGG + chr4.1:41011702-41011721 MS.gene09134:intron 20.0%
!! CCATTATCTATTGTTTATTT+GGG - chr4.1:41013270-41013289 None:intergenic 20.0%
!! CTCGATATCTTTAAATTAAA+AGG + chr4.1:41014026-41014045 MS.gene09134:intron 20.0%
!! GATTATGAGTAATTGAAATT+TGG + chr4.1:41011746-41011765 MS.gene09134:intron 20.0%
!!! ACATAATATTTGGTGTTAAA+AGG + chr4.1:41014205-41014224 MS.gene09134:intron 20.0%
!!! ATATATGCTTTTTAGAATTG+TGG + chr4.1:41013874-41013893 MS.gene09134:intron 20.0%
!!! TAAAACACCATATTTTTTAG+AGG - chr4.1:41012539-41012558 None:intergenic 20.0%
!!! TATGAATCTTTATAGGTTTT+GGG + chr4.1:41011788-41011807 MS.gene09134:intron 20.0%
!!! TTATCATCTCATTTTAAAGT+TGG + chr4.1:41014265-41014284 MS.gene09134:intron 20.0%
!!! TTATGAATCTTTATAGGTTT+TGG + chr4.1:41011787-41011806 MS.gene09134:intron 20.0%
! AAAAAATGGAAACTAAGGTT+AGG - chr4.1:41012619-41012638 None:intergenic 25.0%
! ACCATAGGAACAAAATATAA+AGG - chr4.1:41012645-41012664 None:intergenic 25.0%
! AGCATGTTAATTTAGATAAG+GGG + chr4.1:41014555-41014574 MS.gene09134:intron 25.0%
! AGTCCAATTCTTAAAAGTTA+TGG + chr4.1:41014641-41014660 MS.gene09134:intron 25.0%
! ATAAATGTAATCCCTATACT+CGG - chr4.1:41014140-41014159 None:intergenic 25.0%
! ATATGAACTTGTCTTGATTT+GGG + chr4.1:41011829-41011848 MS.gene09134:intron 25.0%
! ATGTCTCGAAACATAATATT+TGG + chr4.1:41014195-41014214 MS.gene09134:intron 25.0%
! ATTGTTTATTTGGGTAATAC+AGG - chr4.1:41013261-41013280 None:intergenic 25.0%
! CAAGTATTAATTAGTGACAT+AGG - chr4.1:41014422-41014441 None:intergenic 25.0%
! CAGGTTATTATTATACAGTA+AGG - chr4.1:41014353-41014372 None:intergenic 25.0%
! CCCAAATAAACAATAGATAA+TGG + chr4.1:41013267-41013286 MS.gene09134:intron 25.0%
! GAATGACATGAATATGAAAT+TGG + chr4.1:41013308-41013327 MS.gene09134:intron 25.0%
! GAGCATGTTAATTTAGATAA+GGG + chr4.1:41014554-41014573 MS.gene09134:intron 25.0%
! GCCATTATCTATTGTTTATT+TGG - chr4.1:41013271-41013290 None:intergenic 25.0%
! TAACATTTAGCAACATATAC+AGG - chr4.1:41013797-41013816 None:intergenic 25.0%
! TAAGAATTGGACTATTGAAT+AGG - chr4.1:41014634-41014653 None:intergenic 25.0%
! TGAGCATGTTAATTTAGATA+AGG + chr4.1:41014553-41014572 MS.gene09134:intron 25.0%
! TGTATATGTTGCTAAATGTT+AGG + chr4.1:41013796-41013815 MS.gene09134:intron 25.0%
! TTTAAGTCTTTGAATAAGCT+TGG + chr4.1:41013705-41013724 MS.gene09134:intron 25.0%
!! ACCTTTATATTTTGTTCCTA+TGG + chr4.1:41012641-41012660 MS.gene09134:intron 25.0%
!! TATATTTTGTTCCTATGGTT+TGG + chr4.1:41012646-41012665 MS.gene09134:intron 25.0%
!!! AGATACTTCCTAGTTTTAAT+TGG - chr4.1:41013928-41013947 None:intergenic 25.0%
!!! AGGATATTGTTTTTAAAAGC+AGG - chr4.1:41014372-41014391 None:intergenic 25.0%
!!! ATAAACAATTTTGAAGGAAG+AGG - chr4.1:41012489-41012508 None:intergenic 25.0%
!!! ATCTCATTTTAAAGTTGGAT+TGG + chr4.1:41014270-41014289 MS.gene09134:intron 25.0%
!!! CGATAATAGTTTGGTTTTTT+TGG + chr4.1:41011711-41011730 MS.gene09134:intron 25.0%
!!! TAACTGCAGTATTTTTACTT+TGG + chr4.1:41013408-41013427 MS.gene09134:intron 25.0%
!!! TAATTAAGAAGAGCATGTTT+TGG - chr4.1:41012286-41012305 None:intergenic 25.0%
!!! TCGATAATTGATAACGAAAA+TGG - chr4.1:41011694-41011713 None:intergenic 25.0%
!!! TGTAGCTATTTGTTTTTTTG+TGG + chr4.1:41012376-41012395 MS.gene09134:intron 25.0%
AACGAAAATGGAGAATTGAA+CGG - chr4.1:41011682-41011701 None:intergenic 30.0%
AAGTTATTCCATAGAGCTTA+TGG + chr4.1:41012154-41012173 MS.gene09134:intron 30.0%
AATACAGTGGATAGAATGTA+AGG + chr4.1:41014294-41014313 MS.gene09134:intron 30.0%
AATAGGCTAAACAATTTGAC+TGG - chr4.1:41014617-41014636 None:intergenic 30.0%
AGGATTCTCCAATTAAAACT+AGG + chr4.1:41013917-41013936 MS.gene09134:intron 30.0%
ATACAGTGGATAGAATGTAA+GGG + chr4.1:41014295-41014314 MS.gene09134:intron 30.0%
ATAGGCTAAACAATTTGACT+GGG - chr4.1:41014616-41014635 None:intergenic 30.0%
CAATAGACAAGTTATCATAG+AGG - chr4.1:41014738-41014757 None:intergenic 30.0%
CATATGAACTTGTCTTGATT+TGG + chr4.1:41011828-41011847 MS.gene09134:intron 30.0%
GGTACAAAAAATGGAAACTA+AGG - chr4.1:41012624-41012643 None:intergenic 30.0%
TCTTAAGTATACTGTATACG+TGG + chr4.1:41012316-41012335 MS.gene09134:intron 30.0%
TGTGGTATGTAGAAAACTAT+GGG + chr4.1:41013511-41013530 MS.gene09134:intron 30.0%
! GCTTCTTGAATCTCTTATTT+AGG + chr4.1:41012695-41012714 MS.gene09134:intron 30.0%
!! CAGCCATAACTTTTAAGAAT+TGG - chr4.1:41014647-41014666 None:intergenic 30.0%
!!! GTTTTTTTGGTTAGTGAGAA+TGG + chr4.1:41011724-41011743 MS.gene09134:intron 30.0%
!!! TTGTTTTTTTGTGGATGAGT+AGG + chr4.1:41012385-41012404 MS.gene09134:intron 30.0%
!!! TTTTTGTTGTTGTGAAACAC+AGG + chr4.1:41012880-41012899 MS.gene09134:intron 30.0%
AAAGCTGTTGCAGTTCTTAA+GGG + chr4.1:41011590-41011609 MS.gene09134:CDS 35.0%
AACATAATTGCTGATGCCAA+CGG + chr4.1:41012791-41012810 MS.gene09134:CDS 35.0%
AACTGGTTAGGATTGAAATG+TGG - chr4.1:41012722-41012741 None:intergenic 35.0%
ACGAAAATGGAGAATTGAAC+GGG - chr4.1:41011681-41011700 None:intergenic 35.0%
ACTCTTACTCAAGAAAACGA+AGG + chr4.1:41011638-41011657 MS.gene09134:CDS 35.0%
ATAATGGCTACATATCACAG+GGG + chr4.1:41013283-41013302 MS.gene09134:intron 35.0%
ATGTAAACAAGCATTACCGT+TGG - chr4.1:41012810-41012829 None:intergenic 35.0%
ATTGAACGGGATTAAGAAGA+TGG - chr4.1:41011668-41011687 None:intergenic 35.0%
CTATTGTGCTTGATTGTTTC+AGG + chr4.1:41014752-41014771 MS.gene09134:intron 35.0%
CTGTGGTATGTAGAAAACTA+TGG + chr4.1:41013510-41013529 MS.gene09134:intron 35.0%
CTTGGATATGAATCAATGTC+TGG + chr4.1:41013971-41013990 MS.gene09134:intron 35.0%
CTTGTTGGAAACCAATATGT+GGG - chr4.1:41013624-41013643 None:intergenic 35.0%
GATACTAGAGAAATTGTGAC+TGG + chr4.1:41013830-41013849 MS.gene09134:intron 35.0%
GCTTATTTCCATAAGCTCTA+TGG - chr4.1:41012165-41012184 None:intergenic 35.0%
GTTTATTTGAGCTTGTCTAC+CGG - chr4.1:41012259-41012278 None:intergenic 35.0%
TAAATCAGAATTAGACCCAC+TGG - chr4.1:41013009-41013028 None:intergenic 35.0%
TTAAGCTCGTTATCCAAACA+TGG - chr4.1:41011855-41011874 None:intergenic 35.0%
TTGAACGGGATTAAGAAGAT+GGG - chr4.1:41011667-41011686 None:intergenic 35.0%
! AAGTAGCTAACTGTGTTGTT+TGG + chr4.1:41013063-41013082 MS.gene09134:intron 35.0%
! ACAGTTAGCTACTTTCAACA+AGG - chr4.1:41013057-41013076 None:intergenic 35.0%
! ACGACTCTTTGAGAATTGTA+TGG - chr4.1:41013682-41013701 None:intergenic 35.0%
! ACTTGTTGGAAACCAATATG+TGG - chr4.1:41013625-41013644 None:intergenic 35.0%
! AGATAATGGCTACATATCAC+AGG + chr4.1:41013281-41013300 MS.gene09134:intron 35.0%
! ATACGAACATTGACTGTTGT+TGG - chr4.1:41012412-41012431 None:intergenic 35.0%
! CATAGTTTTCTACATACCAC+AGG - chr4.1:41013512-41013531 None:intergenic 35.0%
! GATAATGGCTACATATCACA+GGG + chr4.1:41013282-41013301 MS.gene09134:intron 35.0%
! TACAGTCTTTTCCGAGTATA+GGG + chr4.1:41014126-41014145 MS.gene09134:intron 35.0%
! TTACAGTCTTTTCCGAGTAT+AGG + chr4.1:41014125-41014144 MS.gene09134:intron 35.0%
! TTATTATACAGTAAGGGTGC+AGG - chr4.1:41014346-41014365 None:intergenic 35.0%
!! AAGAAGAGCATGTTTTGGAT+GGG - chr4.1:41012281-41012300 None:intergenic 35.0%
!! ACATTGATTCATATCCAAGC+AGG - chr4.1:41013970-41013989 None:intergenic 35.0%
!! CAAAACTGTGTGTTACTTGT+TGG - chr4.1:41013639-41013658 None:intergenic 35.0%
!! GTTGTTTTCATATGCTATCC+TGG + chr4.1:41011966-41011985 MS.gene09134:intron 35.0%
!! TAAGAAGAGCATGTTTTGGA+TGG - chr4.1:41012282-41012301 None:intergenic 35.0%
!! TTTGTTCCTATGGTTTGGTT+TGG + chr4.1:41012651-41012670 MS.gene09134:intron 35.0%
AAATCACTTGTGAGGCTGTT+TGG - chr4.1:41012234-41012253 None:intergenic 40.0%
AACTATAGTTCTTCTGCCAG+TGG + chr4.1:41012990-41013009 MS.gene09134:intron 40.0%
AAGAACTGCAACAGCTTTCT+TGG - chr4.1:41011588-41011607 None:intergenic 40.0%
AATCACTTGTGAGGCTGTTT+GGG - chr4.1:41012233-41012252 None:intergenic 40.0%
AATCCTAACCAGTTGACACA+CGG + chr4.1:41012728-41012747 MS.gene09134:CDS 40.0%
ACAGTCAATGTTCGTATCAC+TGG + chr4.1:41012415-41012434 MS.gene09134:CDS 40.0%
ACTAGAGAAATTGTGACTGG+AGG + chr4.1:41013833-41013852 MS.gene09134:intron 40.0%
ACTATAGTTCTTCTGCCAGT+GGG + chr4.1:41012991-41013010 MS.gene09134:intron 40.0%
AGTAACAACACCTTCAACAG+TGG - chr4.1:41011621-41011640 None:intergenic 40.0%
AGTATGGTGATACCACCAAT+GGG + chr4.1:41012571-41012590 MS.gene09134:CDS 40.0%
ATCCAAGCAGGCAACAAAAT+GGG - chr4.1:41013958-41013977 None:intergenic 40.0%
ATGCTATCCTGGAGAGATTA+TGG + chr4.1:41011977-41011996 MS.gene09134:intron 40.0%
CATCAGCAATTATGTTTCCC+AGG - chr4.1:41012787-41012806 None:intergenic 40.0%
CCTCTGCGTTGAAAACTTTA+TGG + chr4.1:41012831-41012850 MS.gene09134:intron 40.0%
CTCATTTCCATAATCTCTCC+AGG - chr4.1:41011987-41012006 None:intergenic 40.0%
CTGGAGAGATTATGGAAATG+AGG + chr4.1:41011985-41012004 MS.gene09134:intron 40.0%
CTTGAAGATGACCTTGGAAA+GGG + chr4.1:41013153-41013172 MS.gene09134:CDS 40.0%
GAAAGCTGTTGCAGTTCTTA+AGG + chr4.1:41011589-41011608 MS.gene09134:CDS 40.0%
TACCGGAAAAATCACTTGTG+AGG - chr4.1:41012242-41012261 None:intergenic 40.0%
TATCCAAGCAGGCAACAAAA+TGG - chr4.1:41013959-41013978 None:intergenic 40.0%
TGAAGATGAAATCCGTCATG+CGG + chr4.1:41012757-41012776 MS.gene09134:CDS 40.0%
TTCAAGCTCATGAACCACTA+AGG - chr4.1:41013139-41013158 None:intergenic 40.0%
TTTATCTTGCAGCACGAGTA+TGG + chr4.1:41012555-41012574 MS.gene09134:intron 40.0%
! AGCCTCACAAGTGATTTTTC+CGG + chr4.1:41012237-41012256 MS.gene09134:intron 40.0%
! CATGAACTTAGTTTGAGCAC+TGG + chr4.1:41013466-41013485 MS.gene09134:CDS 40.0%
! CCATAAAGTTTTCAACGCAG+AGG - chr4.1:41012834-41012853 None:intergenic 40.0%
! TTGATTGTTTCAGGTGTGGT+TGG + chr4.1:41014761-41014780 MS.gene09134:intron 40.0%
!! AAGTTGGATTGGCAATACAG+TGG + chr4.1:41014281-41014300 MS.gene09134:intron 40.0%
AAGGGTAACTCCACTGTTGA+AGG + chr4.1:41011608-41011627 MS.gene09134:CDS 45.0%
AGAAGAGAGTGAGAAGTGAG+TGG - chr4.1:41011470-41011489 None:intergenic 45.0%
ATCATGCAGATACCACTCAC+TGG + chr4.1:41013090-41013109 MS.gene09134:intron 45.0%
CATGAGCTTGAAGATGACCT+TGG + chr4.1:41013147-41013166 MS.gene09134:CDS 45.0%
CTCTCCCAATGACTGAATTG+GGG - chr4.1:41013116-41013135 None:intergenic 45.0%
CTTCAGCCAAACCAAACCAT+AGG - chr4.1:41012660-41012679 None:intergenic 45.0%
CTTCTCCGATCATCTTTCTC+CGG + chr4.1:41011485-41011504 MS.gene09134:CDS 45.0%
GAAGATGAAATCCGTCATGC+GGG + chr4.1:41012758-41012777 MS.gene09134:CDS 45.0%
GAATTGAGGAGAGAGCTTGA+CGG - chr4.1:41011516-41011535 None:intergenic 45.0%
GAGTATGGTGATACCACCAA+TGG + chr4.1:41012570-41012589 MS.gene09134:CDS 45.0%
GCTCTCCCAATGACTGAATT+GGG - chr4.1:41013117-41013136 None:intergenic 45.0%
GCTTGAAGATGACCTTGGAA+AGG + chr4.1:41013152-41013171 MS.gene09134:CDS 45.0%
GGATGAACTAACCCTTTCCA+AGG - chr4.1:41013167-41013186 None:intergenic 45.0%
GGCAACAATCGTTGACAATC+AGG + chr4.1:41012912-41012931 MS.gene09134:CDS 45.0%
TTTCTTGGCAGCAGCAACAA+CGG - chr4.1:41011573-41011592 None:intergenic 45.0%
! ATACAGTAAGGGTGCAGGTT+AGG - chr4.1:41014341-41014360 None:intergenic 45.0%
! CGCTGCATTTTCCCACATAT+TGG + chr4.1:41013610-41013629 MS.gene09134:intron 45.0%
! CTGGAATTTGGAACGCGAAA+GGG - chr4.1:41011543-41011562 None:intergenic 45.0%
! GTGCTTGATTGTTTCAGGTG+TGG + chr4.1:41014757-41014776 MS.gene09134:intron 45.0%
! TACAGTAAGGGTGCAGGTTA+GGG - chr4.1:41014340-41014359 None:intergenic 45.0%
! TTCCCATTTTGTTGCCTGCT+TGG + chr4.1:41013953-41013972 MS.gene09134:intron 45.0%
!! AGTTTGAGCACTGGAAATGC+CGG + chr4.1:41013475-41013494 MS.gene09134:CDS 45.0%
!! GCATGACGGATTTCATCTTC+AGG - chr4.1:41012758-41012777 None:intergenic 45.0%
!! GTCTTGATTTGGGCCATGTT+TGG + chr4.1:41011839-41011858 MS.gene09134:intron 45.0%
AACCATGAAGCCCTGGAGTA+AGG - chr4.1:41012441-41012460 None:intergenic 50.0%
AACGGAGAGAGGCTGGAATT+TGG - chr4.1:41011555-41011574 None:intergenic 50.0%
ACCAATGGGTGTATCTCGAC+AGG + chr4.1:41012585-41012604 MS.gene09134:CDS 50.0%
ACCACAGGCTAATCTTCCAC+CGG - chr4.1:41013497-41013516 None:intergenic 50.0%
ACCTGTCGAGATACACCCAT+TGG - chr4.1:41012589-41012608 None:intergenic 50.0%
ACTGGCCCCAATTCAGTCAT+TGG + chr4.1:41013108-41013127 MS.gene09134:CDS 50.0%
AGACGCCGGAGAAAGATGAT+CGG - chr4.1:41011493-41011512 None:intergenic 50.0%
AGGTGAAAACCATGAAGCCC+TGG - chr4.1:41012448-41012467 None:intergenic 50.0%
AGTCATTGGGAGAGCCTTAG+TGG + chr4.1:41013122-41013141 MS.gene09134:CDS 50.0%
ATGGCTACATATCACAGGGG+AGG + chr4.1:41013286-41013305 MS.gene09134:intron 50.0%
ATTAGTGACATAGGCGACGC+AGG - chr4.1:41014413-41014432 None:intergenic 50.0%
CGCGAAAGGGTTGAGAATTG+AGG - chr4.1:41011530-41011549 None:intergenic 50.0%
CTGGCCCCAATTCAGTCATT+GGG + chr4.1:41013109-41013128 MS.gene09134:CDS 50.0%
GCATCTGCTCGTACTTATGC+AGG + chr4.1:41013439-41013458 MS.gene09134:intron 50.0%
GGCTCTCCCAATGACTGAAT+TGG - chr4.1:41013118-41013137 None:intergenic 50.0%
TCTGCTCGTACTTATGCAGG+TGG + chr4.1:41013442-41013461 MS.gene09134:intron 50.0%
TGTCGAGATACACCCATTGG+TGG - chr4.1:41012586-41012605 None:intergenic 50.0%
! AGGGCTTCATGGTTTTCACC+TGG + chr4.1:41012447-41012466 MS.gene09134:CDS 50.0%
! GAGAGTGTGACGCCATTGTT+AGG - chr4.1:41011433-41011452 None:intergenic 50.0%
! GCTGGAATTTGGAACGCGAA+AGG - chr4.1:41011544-41011563 None:intergenic 50.0%
! GGCATGAAGTATCACTCACC+AGG - chr4.1:41012468-41012487 None:intergenic 50.0%
!! GTATCACTGGCCTTACTCCA+GGG + chr4.1:41012428-41012447 MS.gene09134:CDS 50.0%
ACTGAATTGGGGCCAGTGAG+TGG - chr4.1:41013105-41013124 None:intergenic 55.0%
CAGAGTGCACATCCTACACG+GGG - chr4.1:41014590-41014609 None:intergenic 55.0%
CGCAGAGTGCACATCCTACA+CGG - chr4.1:41014592-41014611 None:intergenic 55.0%
GAGTGAGAAGTGAGTGGCGA+AGG - chr4.1:41011464-41011483 None:intergenic 55.0%
GCACCGTGTGTCAACTGGTT+AGG - chr4.1:41012734-41012753 None:intergenic 55.0%
GCAGAGTGCACATCCTACAC+GGG - chr4.1:41014591-41014610 None:intergenic 55.0%
! GTGAAACACAGGCGTTGCAG+AGG + chr4.1:41012891-41012910 MS.gene09134:intron 55.0%
!! CGTATCACTGGCCTTACTCC+AGG + chr4.1:41012427-41012446 MS.gene09134:CDS 55.0%
!! TTGAGCACTGGAAATGCCGG+TGG + chr4.1:41013478-41013497 MS.gene09134:CDS 55.0%
AATCCGTCATGCGGGTGACC+TGG + chr4.1:41012766-41012785 MS.gene09134:CDS 60.0%
AGAGAGCTTGACGGAGACGC+CGG - chr4.1:41011507-41011526 None:intergenic 60.0%
ATCCGTCATGCGGGTGACCT+GGG + chr4.1:41012767-41012786 MS.gene09134:CDS 60.0%
CAGCAACAACGGAGAGAGGC+TGG - chr4.1:41011562-41011581 None:intergenic 60.0%
GCAGCAGCAACAACGGAGAG+AGG - chr4.1:41011566-41011585 None:intergenic 60.0%
GGCCTTACTCCAGGGCTTCA+TGG + chr4.1:41012436-41012455 MS.gene09134:CDS 60.0%
GGGTTAAACCTGCCCCGTGT+AGG + chr4.1:41014575-41014594 MS.gene09134:intron 60.0%
TGACATAGGCGACGCAGGCA+TGG - chr4.1:41014408-41014427 None:intergenic 60.0%
TTCCCAGGTCACCCGCATGA+CGG - chr4.1:41012772-41012791 None:intergenic 60.0%
!! CAGGAGCACCGTGTGTCAAC+TGG - chr4.1:41012739-41012758 None:intergenic 60.0%
!! GCCGGTGGAAGATTAGCCTG+TGG + chr4.1:41013493-41013512 MS.gene09134:CDS 60.0%
GTGCACATCCTACACGGGGC+AGG - chr4.1:41014586-41014605 None:intergenic 65.0%
ACGCAGGCATGGCGCAGAGC+AGG - chr4.1:41014397-41014416 None:intergenic 70.0%
GGCATGGCGCAGAGCAGGTC+AGG - chr4.1:41014392-41014411 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 41011425 41014799 41011425 ID=MS.gene09134
chr4.1 mRNA 41011425 41014799 41011425 ID=MS.gene09134.t1;Parent=MS.gene09134
chr4.1 exon 41011425 41011659 41011425 ID=MS.gene09134.t1.exon1;Parent=MS.gene09134.t1
chr4.1 CDS 41011425 41011659 41011425 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41012407 41012468 41012407 ID=MS.gene09134.t1.exon2;Parent=MS.gene09134.t1
chr4.1 CDS 41012407 41012468 41012407 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41012567 41012606 41012567 ID=MS.gene09134.t1.exon3;Parent=MS.gene09134.t1
chr4.1 CDS 41012567 41012606 41012567 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41012717 41012812 41012717 ID=MS.gene09134.t1.exon4;Parent=MS.gene09134.t1
chr4.1 CDS 41012717 41012812 41012717 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41012902 41012933 41012902 ID=MS.gene09134.t1.exon5;Parent=MS.gene09134.t1
chr4.1 CDS 41012902 41012933 41012902 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41013099 41013174 41013099 ID=MS.gene09134.t1.exon6;Parent=MS.gene09134.t1
chr4.1 CDS 41013099 41013174 41013099 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41013461 41013514 41013461 ID=MS.gene09134.t1.exon7;Parent=MS.gene09134.t1
chr4.1 CDS 41013461 41013514 41013461 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
chr4.1 exon 41014774 41014799 41014774 ID=MS.gene09134.t1.exon8;Parent=MS.gene09134.t1
chr4.1 CDS 41014774 41014799 41014774 ID=cds.MS.gene09134.t1;Parent=MS.gene09134.t1
Gene Sequence

>MS.gene09134

ATGCACCTAACAATGGCGTCACACTCTCTCATGTCACCTTCGCCACTCACTTCTCACTCTCTTCTCCGATCATCTTTCTCCGGCGTCTCCGTCAAGCTCTCTCCTCAATTCTCAACCCTTTCGCGTTCCAAATTCCAGCCTCTCTCCGTTGTTGCTGCTGCCAAGAAAGCTGTTGCAGTTCTTAAGGGTAACTCCACTGTTGAAGGTGTTGTTACTCTTACTCAAGAAAACGAAGGTGACCCATCTTCTTAATCCCGTTCAATTCTCCATTTTCGTTATCAATTATCGATAATAGTTTGGTTTTTTTGGTTAGTGAGAATGGATTATGAGTAATTGAAATTTGGTTTGTAATTTATAATGCATTATGAATCTTTATAGGTTTTGGGTGAATAGTTGTATTATTCATATGAACTTGTCTTGATTTGGGCCATGTTTGGATAACGAGCTTAATTTGCTGCTTTTATAGTGTAAGCACTTATGTTTAAGCTATTTCTATAGCACAAGATAAAATGAAGTTAAACTGTTTTAATATAATCTATAGGTTGTTTTCATATGCTATCCTGGAGAGATTATGGAAATGAGGTGAAAACAGCTTATGAACATATCATAAGCCGTTTTCATAAGATTATTAGATAAACAGCTTGAGTGAGTGCTTTTTGTATTAATGCTAATGTATAGAGTATAAACTATTTCTGCAAAAGATAAAATAAAGTCAAACTATTTTCATGTAAGTTATTCCATAGAGCTTATGGAAATAAGCTGAAAACAACTTACAGACATGTTACAAGTTATTTCTATGAGCTTTCCCAAACAGCCTCACAAGTGATTTTTCCGGTAGACAAGCTCAAATAAACCCATCCAAAACATGCTCTTCTTAATTAGTTGTAGTTATCTTAAGTATACTGTATACGTGGTAATGTAATGTATAGTTTTTTGTGTGTTGAATTGATTTGTAGCTATTTGTTTTTTTGTGGATGAGTAGGTCCAACAACAGTCAATGTTCGTATCACTGGCCTTACTCCAGGGCTTCATGGTTTTCACCTGGTGAGTGATACTTCATGCCTCTTCCTTCAAAATTGTTTATTTAGTTATTCATTTATGTATTTATTTTCCTCTAAAAAATATGGTGTTTTATCTTGCAGCACGAGTATGGTGATACCACCAATGGGTGTATCTCGACAGGTAATGTAGCCTAACCTTAGTTTCCATTTTTTGTACCTTTATATTTTGTTCCTATGGTTTGGTTTGGCTGAAGAAGTTAAGATTGTTTGCTTCTTGAATCTCTTATTTAGGACCACATTTCAATCCTAACCAGTTGACACACGGTGCTCCTGAAGATGAAATCCGTCATGCGGGTGACCTGGGAAACATAATTGCTGATGCCAACGGTAATGCTTGTTTACATTCCTCTGCGTTGAAAACTTTATGGACTTTCTTATGTATCATTTTGTAATTTTTTTGTTGTTGTGAAACACAGGCGTTGCAGAGGCAACAATCGTTGACAATCAGGTATGCTTTGTTATCTGTATTTTAATATGATAGTTGTTCTTTTGATAGTTATTTCAAACTATAGTTCTTCTGCCAGTGGGTCTAATTCTGATTTAGTTTTTTTTAAGAAACTACATGTTTCCTTGTTGAAAGTAGCTAACTGTGTTGTTTGGCGAAATCATGCAGATACCACTCACTGGCCCCAATTCAGTCATTGGGAGAGCCTTAGTGGTTCATGAGCTTGAAGATGACCTTGGAAAGGGTTAGTTCATCCATTTTATATATTTATTTAAATTTTTATATGATTTTGTATTGTAGATGAAAATACTGTTACATGCTTCAACACCTGTATTACCCAAATAAACAATAGATAATGGCTACATATCACAGGGGAGGAATGACATGAATATGAAATTGGTTGTTCATGTTCTTTCTAACATTGTATATCTCATGTAGAGATTGTAGTTTTGTATATCAAGTATGATGTCTTAATAATAACTGCAGTATTTTTACTTTGGTCTCATCTGCATCTGCTCGTACTTATGCAGGTGGACATGAACTTAGTTTGAGCACTGGAAATGCCGGTGGAAGATTAGCCTGTGGTATGTAGAAAACTATGGGTTAAAACAGTTCTATCCTTTTCATGATCTTCAATTATTCCATACTTAAATGCTTATATGTTATGTGATTTTCACTTCGCTGCATTTTCCCACATATTGGTTTCCAACAAGTAACACACAGTTTTGATATGATTTAAAAGAAAGCTCCATACAATTCTCAAAGAGTCGTGCATTTAAGTCTTTGAATAAGCTTGGTCTTGATTTATAGCTGACGAACACTAGCTACTACTAAATTGAGCAGATGCTTTATTGACATAATAGCCTGTATATGTTGCTAAATGTTAGGTTGACGTGAATGATACTAGAGAAATTGTGACTGGAGGTCTAGAATATCTTTTTGTATATATGCTTTTTAGAATTGTGGCAATAACATAATATTAATCTAGGATTCTCCAATTAAAACTAGGAAGTATCTGCAATTTCCCATTTTGTTGCCTGCTTGGATATGAATCAATGTCTGGAAATAAATTTGACAAATTTCATGTTGAACAGTCTCGATATCTTTAAATTAAAAGGGAAATCACAAGCTTGAATACATTCAAACTTATACACTGTCAAAGAAATTTTTTATAACGCTAAGTTTACATTTAAATTACAGTCTTTTCCGAGTATAGGGATTACATTTATACTTATAGAAGTATATACTACATGTCAAACTTGCAATGTCTCGAAACATAATATTTGGTGTTAAAAGGCTATTGAAGCACTTGTTGCGTGTTGTCTTTACGATATTTATCATCTCATTTTAAAGTTGGATTGGCAATACAGTGGATAGAATGTAAGGGTGTGTTTTTGCTAAGTCAACCCTAACCTGCACCCTTACTGTATAATAATAACCTGCTTTTAAAAACAATATCCTGACCTGCTCTGCGCCATGCCTGCGTCGCCTATGTCACTAATTAATACTTGAAGTTTTATTTATACAATAGTTTATCATAGTCTTGAATAGAAACTTAAAAATATGTCAAGAATAAGCTAGTGATGACAAGTTGATATAACTGTCTCTATTAATAAATTATATGAGCATGTTAATTTAGATAAGGGGTTAAACCTGCCCCGTGTAGGATGTGCACTCTGCGTCCCAGTCAAATTGTTTAGCCTATTCAATAGTCCAATTCTTAAAAGTTATGGCTGATTTATATGTCTGCAATCTTTGTAATTTTTATACTCAAATATTTATGCATCACACACTTTATGTTTGTCCTCTATGATAACTTGTCTATTGTGCTTGATTGTTTCAGGTGTGGTTGGCTTGACTCCAGTATAA

Protein sequence

>MS.gene09134.t1

MHLTMASHSLMSPSPLTSHSLLRSSFSGVSVKLSPQFSTLSRSKFQPLSVVAAAKKAVAVLKGNSTVEGVVTLTQENEGPTTVNVRITGLTPGLHGFHLHEYGDTTNGCISTGPHFNPNQLTHGAPEDEIRHAGDLGNIIADANGVAEATIVDNQIPLTGPNSVIGRALVVHELEDDLGKGGHELSLSTGNAGGRLACGVVGLTPV