Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014139.t1 | XP_024627007.1 | 98.7 | 394 | 5 | 0 | 1 | 394 | 1 | 394 | 1.10E-219 | 772.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014139.t1 | Q9M682 | 66.8 | 394 | 120 | 7 | 1 | 389 | 1 | 388 | 2.3e-138 | 493.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014139.t1 | A2Q3K9 | 98.7 | 394 | 5 | 0 | 1 | 394 | 1 | 394 | 7.7e-220 | 772.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014139 | MS.gene072058 | PPI |
| MS.gene014139 | MS.gene04879 | PPI |
| MS.gene014139 | MS.gene072329 | PPI |
| MS.gene01884 | MS.gene014139 | PPI |
| MS.gene014139 | MS.gene00843 | PPI |
| MS.gene014139 | MS.gene04860 | PPI |
| MS.gene014139 | MS.gene047966 | PPI |
| MS.gene014139 | MS.gene00617 | PPI |
| MS.gene04859 | MS.gene014139 | PPI |
| MS.gene014139 | MS.gene017918 | PPI |
| MS.gene014139 | MS.gene047200 | PPI |
| MS.gene014139 | MS.gene002926 | PPI |
| MS.gene014139 | MS.gene072328 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014139.t1 | MTR_7g092020 | 98.731 | 394 | 5 | 0 | 1 | 394 | 1 | 394 | 0.0 | 797 |
| MS.gene014139.t1 | MTR_7g092020 | 98.623 | 363 | 4 | 1 | 1 | 363 | 1 | 362 | 0.0 | 732 |
| MS.gene014139.t1 | MTR_7g092020 | 98.494 | 332 | 5 | 0 | 63 | 394 | 15 | 346 | 0.0 | 672 |
| MS.gene014139.t1 | MTR_7g092020 | 98.193 | 332 | 5 | 1 | 63 | 394 | 15 | 345 | 0.0 | 666 |
| MS.gene014139.t1 | MTR_0374s0010 | 82.000 | 100 | 18 | 0 | 226 | 325 | 1 | 100 | 2.85e-53 | 172 |
| MS.gene014139.t1 | MTR_2g021320 | 36.747 | 166 | 100 | 3 | 136 | 300 | 91 | 252 | 3.49e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014139.t1 | AT3G57550 | 66.751 | 394 | 121 | 6 | 1 | 389 | 1 | 389 | 0.0 | 509 |
| MS.gene014139.t1 | AT3G57550 | 66.835 | 395 | 118 | 7 | 1 | 389 | 1 | 388 | 1.89e-180 | 507 |
| MS.gene014139.t1 | AT3G57550 | 66.835 | 395 | 118 | 7 | 1 | 389 | 1 | 388 | 1.89e-180 | 507 |
| MS.gene014139.t1 | AT2G41880 | 67.358 | 386 | 116 | 6 | 1 | 382 | 1 | 380 | 4.11e-177 | 498 |
| MS.gene014139.t1 | AT2G41880 | 67.358 | 386 | 116 | 6 | 1 | 382 | 1 | 380 | 4.11e-177 | 498 |
| MS.gene014139.t1 | AT2G41880 | 62.892 | 415 | 115 | 8 | 1 | 382 | 1 | 409 | 5.40e-170 | 481 |
| MS.gene014139.t1 | AT2G41880 | 68.839 | 353 | 104 | 5 | 1 | 349 | 1 | 351 | 1.63e-165 | 468 |
| MS.gene014139.t1 | AT2G41880 | 68.839 | 353 | 104 | 5 | 1 | 349 | 1 | 351 | 1.63e-165 | 468 |
| MS.gene014139.t1 | AT2G41880 | 70.898 | 323 | 90 | 3 | 1 | 319 | 1 | 323 | 2.62e-159 | 451 |
| MS.gene014139.t1 | AT2G41880 | 70.794 | 315 | 88 | 3 | 1 | 311 | 1 | 315 | 8.99e-155 | 439 |
| MS.gene014139.t1 | AT2G41880 | 70.794 | 315 | 88 | 3 | 1 | 311 | 1 | 315 | 1.76e-154 | 439 |
| MS.gene014139.t1 | AT2G41880 | 70.794 | 315 | 88 | 3 | 1 | 311 | 1 | 315 | 1.76e-154 | 439 |
| MS.gene014139.t1 | AT3G06200 | 32.418 | 182 | 116 | 4 | 136 | 314 | 91 | 268 | 1.84e-20 | 90.9 |
Find 90 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGCACCCAAATT+AGG | 0.227947 | 7.4:-17057963 | MS.gene014139:intron |
| CTTCAGGATGGACCTCTTAA+TGG | 0.276233 | 7.4:-17059741 | MS.gene014139:CDS |
| ATTGTTATTAGTGGTCCTTC+TGG | 0.288971 | 7.4:-17059063 | MS.gene014139:CDS |
| TTCTCAAGCTCTTCCATTGA+TGG | 0.297823 | 7.4:+17058323 | None:intergenic |
| GAGCATTACGCAGTCGCTTT+AGG | 0.302663 | 7.4:+17058181 | None:intergenic |
| CCATATCTGGTCATCTGATT+TGG | 0.313449 | 7.4:+17059300 | None:intergenic |
| CCATCTTTCTCCATATTTCT+CGG | 0.318499 | 7.4:+17058955 | None:intergenic |
| TCACACTCTTCTCAGTAAAA+TGG | 0.321682 | 7.4:+17058923 | None:intergenic |
| CCAAATCAGATGACCAGATA+TGG | 0.340254 | 7.4:-17059300 | MS.gene014139:CDS |
| AAGGAATTCCCTTCGATGTT+TGG | 0.340728 | 7.4:-17059006 | MS.gene014139:CDS |
| TCAAGTCCTCTTGTCCTTCC+AGG | 0.345102 | 7.4:+17057441 | None:intergenic |
| AACCCGTGCTCCGAGAAATA+TGG | 0.350022 | 7.4:-17058965 | MS.gene014139:CDS |
| CAGAAATTACTGGGACTTGA+TGG | 0.358399 | 7.4:-17057990 | MS.gene014139:CDS |
| GTTCCTTGTTGATGACCTTC+AGG | 0.367183 | 7.4:-17059757 | MS.gene014139:CDS |
| ATCATAAGCTGCATCTCTTC+TGG | 0.369022 | 7.4:-17057785 | MS.gene014139:CDS |
| TTCATTGGTGCAGAAATTAC+TGG | 0.369583 | 7.4:-17058000 | MS.gene014139:intron |
| TCTGTCCATGGTAATTTGTA+TGG | 0.376553 | 7.4:-17058859 | MS.gene014139:CDS |
| CTCGAATTTGCTTCTGTCCA+TGG | 0.403156 | 7.4:-17058871 | MS.gene014139:CDS |
| GAGAAACCTATTGTTATTAG+TGG | 0.405407 | 7.4:-17059072 | MS.gene014139:CDS |
| ATTCTTGATATTGATGTTCA+AGG | 0.419974 | 7.4:-17058401 | MS.gene014139:CDS |
| TTCAAGGAGCAAGATCTGTT+AGG | 0.421033 | 7.4:-17058385 | MS.gene014139:CDS |
| GTCTGTCATAACACTCTTCA+AGG | 0.422735 | 7.4:+17058097 | None:intergenic |
| TGAGGTTGTTGCTTGGAGTA+AGG | 0.423659 | 7.4:-17059112 | MS.gene014139:CDS |
| TGGACAGACAAAGATGAATA+TGG | 0.427437 | 7.4:+17058346 | None:intergenic |
| TGGAACCTTTCTTAAGAACT+AGG | 0.427990 | 7.4:+17059320 | None:intergenic |
| CTTTGTCTGTCCACCATCAA+TGG | 0.430337 | 7.4:-17058336 | MS.gene014139:CDS |
| GAAGGACCACTAATAACAAT+AGG | 0.431055 | 7.4:+17059066 | None:intergenic |
| ATTAGTGGTCCTTCTGGAGT+TGG | 0.435618 | 7.4:-17059057 | MS.gene014139:CDS |
| CTCCATATTTCTCGGAGCAC+GGG | 0.445632 | 7.4:+17058963 | None:intergenic |
| CGGATCCTAGTTCTTAAGAA+AGG | 0.451808 | 7.4:-17059325 | MS.gene014139:CDS |
| TCTCCATATTTCTCGGAGCA+CGG | 0.454075 | 7.4:+17058962 | None:intergenic |
| GGTTTGGTGCCTAGCACAGT+TGG | 0.455219 | 7.4:+17059388 | None:intergenic |
| TGGATGTTTCCTCACTGAAA+GGG | 0.456264 | 7.4:-17057470 | MS.gene014139:CDS |
| TTCAATTCAAGACCATTAAG+AGG | 0.459949 | 7.4:+17059729 | None:intergenic |
| CTTTCTTAAGAACTAGGATC+CGG | 0.474576 | 7.4:+17059326 | None:intergenic |
| TTGAGAAGCGCCTTCGTGAC+AGG | 0.480044 | 7.4:-17058307 | MS.gene014139:intron |
| TCCATTGCATGACAAGGGTT+TGG | 0.480420 | 7.4:+17059372 | None:intergenic |
| TCTTCTCAGTAAAATGGTAA+TGG | 0.482341 | 7.4:+17058929 | None:intergenic |
| TTGACCGTAGTCTTGGAGAA+TGG | 0.486043 | 7.4:-17059492 | MS.gene014139:intron |
| CTGTCCATGGTAATTTGTAT+GGG | 0.487223 | 7.4:-17058858 | MS.gene014139:CDS |
| CTTGTTGATGACCTTCAGGA+TGG | 0.487351 | 7.4:-17059753 | MS.gene014139:CDS |
| TCACCTCTAGAAACCATATC+TGG | 0.487464 | 7.4:+17059287 | None:intergenic |
| CGAGAAATATGGAGAAAGAT+GGG | 0.489516 | 7.4:-17058954 | MS.gene014139:CDS |
| CCGAGAAATATGGAGAAAGA+TGG | 0.490569 | 7.4:-17058955 | MS.gene014139:CDS |
| GTTTGACAGTATGTCACTGT+TGG | 0.492792 | 7.4:-17059553 | MS.gene014139:intron |
| ATGGAGAAAGAGATCAAAAG+TGG | 0.501117 | 7.4:-17058901 | MS.gene014139:CDS |
| GTTGGTAGATTAATCTCTCC+AGG | 0.507097 | 7.4:+17057842 | None:intergenic |
| GAGGTTGTTGCTTGGAGTAA+GGG | 0.507302 | 7.4:-17059111 | MS.gene014139:CDS |
| AAAGCGACTGCGTAATGCTC+AGG | 0.512562 | 7.4:-17058178 | MS.gene014139:CDS |
| GGTCCTTCTGGAGTTGGTAA+AGG | 0.512799 | 7.4:-17059051 | MS.gene014139:CDS |
| GTTTGGTGCCTAGCACAGTT+GGG | 0.517021 | 7.4:+17059389 | None:intergenic |
| ACTAATATCAATGCTCATGA+AGG | 0.517312 | 7.4:-17059025 | MS.gene014139:CDS |
| GCTTGGAGTAAGGGTGTGAT+AGG | 0.517396 | 7.4:-17059102 | MS.gene014139:CDS |
| TCAAGGAGCAAGATCTGTTA+GGG | 0.522205 | 7.4:-17058384 | MS.gene014139:CDS |
| TTAGACACTGAATGATCTGT+TGG | 0.523783 | 7.4:+17057824 | None:intergenic |
| GTCACTGTTGGAGCTGATGA+TGG | 0.527989 | 7.4:-17059541 | MS.gene014139:CDS |
| TTGGATGTTTCCTCACTGAA+AGG | 0.528344 | 7.4:-17057471 | MS.gene014139:CDS |
| AGAGTGTTATGACAGACTTA+AGG | 0.531515 | 7.4:-17058091 | MS.gene014139:intron |
| TCTGTCAATCCAGCAGCACC+TGG | 0.532175 | 7.4:-17057860 | MS.gene014139:intron |
| CTGAATATGTTAGGCAGCAG+AGG | 0.539132 | 7.4:-17059149 | MS.gene014139:CDS |
| AGGTGGACACTGAATATGTT+AGG | 0.540338 | 7.4:-17059158 | MS.gene014139:CDS |
| TGGGGACTGAGGTTGTTGCT+TGG | 0.545642 | 7.4:-17059119 | MS.gene014139:CDS |
| TGCAAAACAACTACTGTCGT+TGG | 0.554632 | 7.4:-17059696 | MS.gene014139:CDS |
| TTGACTTGACAGGATCATGT+TGG | 0.561118 | 7.4:-17057490 | MS.gene014139:intron |
| TCAAGCTCTTCCATTGATGG+TGG | 0.563601 | 7.4:+17058326 | None:intergenic |
| GGATGTTTCCTCACTGAAAG+GGG | 0.566805 | 7.4:-17057469 | MS.gene014139:CDS |
| AGGGTTCACCCAACTGTGCT+AGG | 0.568022 | 7.4:-17059397 | MS.gene014139:CDS |
| CATCTCTTCTGGACTTGACA+AGG | 0.573859 | 7.4:-17057774 | MS.gene014139:CDS |
| GGTGCACCTGGAAGGACAAG+AGG | 0.574956 | 7.4:-17057447 | MS.gene014139:CDS |
| AATGGTCTTGAATTGAACAA+TGG | 0.577419 | 7.4:-17059723 | MS.gene014139:CDS |
| GTTGAAGTGGTAACTGATGC+AGG | 0.579250 | 7.4:-17058820 | MS.gene014139:CDS |
| TCATTGGTGCAGAAATTACT+GGG | 0.585295 | 7.4:-17057999 | MS.gene014139:intron |
| ACCAAACCCTTGTCATGCAA+TGG | 0.601097 | 7.4:-17059373 | MS.gene014139:CDS |
| AAACAGAGGGACTGAGACTG+AGG | 0.601275 | 7.4:-17058211 | MS.gene014139:intron |
| CATTAAGAGGTCCATCCTGA+AGG | 0.605764 | 7.4:+17059742 | None:intergenic |
| TGAGTGTCCATTGCATGACA+AGG | 0.606716 | 7.4:+17059366 | None:intergenic |
| CAGTGTTGAGGCTGTTGAAG+TGG | 0.617517 | 7.4:-17058833 | MS.gene014139:CDS |
| CTGACCATTCTCCAAGACTA+CGG | 0.617954 | 7.4:+17059488 | None:intergenic |
| GATGTTTCCTCACTGAAAGG+GGG | 0.625893 | 7.4:-17057468 | MS.gene014139:CDS |
| CATCCTGAAGGTCATCAACA+AGG | 0.626232 | 7.4:+17059754 | None:intergenic |
| CACTTCAACAGCCTCAACAC+TGG | 0.628025 | 7.4:+17058834 | None:intergenic |
| GCTCAGGCTGAGATTGAGCA+AGG | 0.631772 | 7.4:-17058162 | MS.gene014139:CDS |
| GTTCCTTTACCAACTCCAGA+AGG | 0.638608 | 7.4:+17059048 | None:intergenic |
| TGACCAGATATGGTTTCTAG+AGG | 0.640137 | 7.4:-17059290 | MS.gene014139:intron |
| GAGTGTCCATTGCATGACAA+GGG | 0.640152 | 7.4:+17059367 | None:intergenic |
| CCACTACTCACCTGTCACGA+AGG | 0.647896 | 7.4:+17058297 | None:intergenic |
| TGGTCCCATACAAATTACCA+TGG | 0.653492 | 7.4:+17058854 | None:intergenic |
| AGGTCATCAACAAGGAACGC+TGG | 0.660018 | 7.4:+17059762 | None:intergenic |
| GAGAAATATGGAGAAAGATG+GGG | 0.669595 | 7.4:-17058953 | MS.gene014139:CDS |
| TTTGTATGGGACCAGTGTTG+AGG | 0.692634 | 7.4:-17058845 | MS.gene014139:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCTTACCTAATT+TGG | + | chr7.4:17059398-17059417 | None:intergenic | 15.0% |
| !! | AAAAAATTCTTACCTAATTT+GGG | + | chr7.4:17059397-17059416 | None:intergenic | 15.0% |
| !! | AAACAAGTAAAGAAAATTAT+AGG | + | chr7.4:17059803-17059822 | None:intergenic | 15.0% |
| !! | TTGTTAATTTATGAATCAAA+TGG | + | chr7.4:17059678-17059697 | None:intergenic | 15.0% |
| !!! | ATTAAGTTAAGACTAAATTT+TGG | + | chr7.4:17059107-17059126 | None:intergenic | 15.0% |
| !!! | TAAATGCTAATTTGTTTTAT+TGG | - | chr7.4:17058160-17058179 | MS.gene014139:CDS | 15.0% |
| !!! | TTAATTTTTAAATATTCCAG+AGG | - | chr7.4:17058918-17058937 | MS.gene014139:CDS | 15.0% |
| !! | ATATTAGAACATTAAATCGT+GGG | - | chr7.4:17058611-17058630 | MS.gene014139:intron | 20.0% |
| !! | ATTAAGGAATTTCAATTTCA+GGG | + | chr7.4:17059715-17059734 | None:intergenic | 20.0% |
| !! | CAAAAGAACTAATATGATTA+AGG | + | chr7.4:17059731-17059750 | None:intergenic | 20.0% |
| !! | GAAATTAACAAAATTCCAAA+AGG | + | chr7.4:17059759-17059778 | None:intergenic | 20.0% |
| !!! | AATCAATTCTAAAAACTTCA+AGG | + | chr7.4:17058740-17058759 | None:intergenic | 20.0% |
| !!! | AATTCATTTTATTTGAAGCT+TGG | - | chr7.4:17058588-17058607 | MS.gene014139:intron | 20.0% |
| !!! | CTTAATCATATTAGTTCTTT+TGG | - | chr7.4:17059729-17059748 | MS.gene014139:CDS | 20.0% |
| !!! | TAATTTGTTTTATTGGTACT+AGG | - | chr7.4:17058167-17058186 | MS.gene014139:CDS | 20.0% |
| !!! | TTTGGAATTTTGTTAATTTC+AGG | - | chr7.4:17059759-17059778 | MS.gene014139:CDS | 20.0% |
| !!! | TTTGTTACTGATATTCATTT+TGG | - | chr7.4:17057920-17057939 | MS.gene014139:intron | 20.0% |
| !!! | TTTTTGTTTTAGGCATAAAT+TGG | + | chr7.4:17057758-17057777 | None:intergenic | 20.0% |
| ! | ATTCTTGATATTGATGTTCA+AGG | - | chr7.4:17058944-17058963 | MS.gene014139:CDS | 25.0% |
| ! | CTATTTGATTGTGATCAATA+GGG | - | chr7.4:17057553-17057572 | MS.gene014139:intron | 25.0% |
| ! | CTGAAAATTTACATTCAGTT+TGG | + | chr7.4:17059427-17059446 | None:intergenic | 25.0% |
| ! | GAATTTGTGATGATTAAATG+TGG | - | chr7.4:17057492-17057511 | MS.gene014139:intron | 25.0% |
| ! | GATATTAGAACATTAAATCG+TGG | - | chr7.4:17058610-17058629 | MS.gene014139:intron | 25.0% |
| ! | GATTAAGGAATTTCAATTTC+AGG | + | chr7.4:17059716-17059735 | None:intergenic | 25.0% |
| ! | TACGATTTAAGAAACGAAAT+TGG | + | chr7.4:17059646-17059665 | None:intergenic | 25.0% |
| ! | TCTATTTGATTGTGATCAAT+AGG | - | chr7.4:17057552-17057571 | MS.gene014139:intron | 25.0% |
| ! | TTTATGCCTAAAACAAAAAC+CGG | - | chr7.4:17057759-17057778 | MS.gene014139:intron | 25.0% |
| !!! | ACTTAATGTTTTGAAAACAG+AGG | - | chr7.4:17059120-17059139 | MS.gene014139:CDS | 25.0% |
| !!! | CTTAATGTTTTGAAAACAGA+GGG | - | chr7.4:17059121-17059140 | MS.gene014139:CDS | 25.0% |
| ACTAATATCAATGCTCATGA+AGG | - | chr7.4:17058320-17058339 | MS.gene014139:CDS | 30.0% | |
| ATGAAATAGCATGGAATAGA+AGG | + | chr7.4:17057426-17057445 | None:intergenic | 30.0% | |
| CCAATGAACATACGTATATT+AGG | + | chr7.4:17059333-17059352 | None:intergenic | 30.0% | |
| CCTAATATACGTATGTTCAT+TGG | - | chr7.4:17059330-17059349 | MS.gene014139:CDS | 30.0% | |
| GGTAAGAAATTGTCGTAATT+CGG | + | chr7.4:17058891-17058910 | None:intergenic | 30.0% | |
| GTCAAAAATTTGAACGTCAA+TGG | + | chr7.4:17057838-17057857 | None:intergenic | 30.0% | |
| GTTTCTTAAATCGTAGACAT+TGG | - | chr7.4:17059651-17059670 | MS.gene014139:intron | 30.0% | |
| TCTTCTCAGTAAAATGGTAA+TGG | + | chr7.4:17058419-17058438 | None:intergenic | 30.0% | |
| TGATTAAATGTGGATCAAAG+TGG | - | chr7.4:17057502-17057521 | MS.gene014139:intron | 30.0% | |
| TGTAACTCAATGAAATAGCA+TGG | + | chr7.4:17057435-17057454 | None:intergenic | 30.0% | |
| TGTCGAAATCTATGGTAATT+TGG | + | chr7.4:17058660-17058679 | None:intergenic | 30.0% | |
| TTATGCCTAAAACAAAAACC+GGG | - | chr7.4:17057760-17057779 | MS.gene014139:intron | 30.0% | |
| TTCAATTCAAGACCATTAAG+AGG | + | chr7.4:17057619-17057638 | None:intergenic | 30.0% | |
| TTCAGTTTATAAAGCCATGA+AGG | - | chr7.4:17059442-17059461 | MS.gene014139:intron | 30.0% | |
| ! | AATGGTCTTGAATTGAACAA+TGG | - | chr7.4:17057622-17057641 | MS.gene014139:intron | 30.0% |
| ! | GAGAAACCTATTGTTATTAG+TGG | - | chr7.4:17058273-17058292 | MS.gene014139:intron | 30.0% |
| ! | GATATTCATTTTGGATTGCA+GGG | - | chr7.4:17057929-17057948 | MS.gene014139:intron | 30.0% |
| ! | TGATATTCATTTTGGATTGC+AGG | - | chr7.4:17057928-17057947 | MS.gene014139:intron | 30.0% |
| !! | AGGATGATAAGAACTTTTTC+AGG | + | chr7.4:17059313-17059332 | None:intergenic | 30.0% |
| !!! | TAAGAACTTTTTCAGGATTG+AGG | + | chr7.4:17059306-17059325 | None:intergenic | 30.0% |
| !!! | TTACTTGTTTTAGCACTCAA+GGG | - | chr7.4:17059813-17059832 | MS.gene014139:intron | 30.0% |
| !!! | TTTACTTGTTTTAGCACTCA+AGG | - | chr7.4:17059812-17059831 | MS.gene014139:intron | 30.0% |
| !!! | TTTGTTTTATTGGTACTAGG+TGG | - | chr7.4:17058170-17058189 | MS.gene014139:CDS | 30.0% |
| AATCCACAGTTCAGCAATAA+TGG | + | chr7.4:17058819-17058838 | None:intergenic | 35.0% | |
| ACAGAAAAACCAAACATCGA+AGG | + | chr7.4:17058351-17058370 | None:intergenic | 35.0% | |
| ATGGAGAAAGAGATCAAAAG+TGG | - | chr7.4:17058444-17058463 | MS.gene014139:intron | 35.0% | |
| CAGAAAAACCAAACATCGAA+GGG | + | chr7.4:17058350-17058369 | None:intergenic | 35.0% | |
| CATGTCAGTATTTACCTTCA+TGG | + | chr7.4:17059459-17059478 | None:intergenic | 35.0% | |
| CCATCTTTCTCCATATTTCT+CGG | + | chr7.4:17058393-17058412 | None:intergenic | 35.0% | |
| CGAGAAATATGGAGAAAGAT+GGG | - | chr7.4:17058391-17058410 | MS.gene014139:CDS | 35.0% | |
| CTTTCTTAAGAACTAGGATC+CGG | + | chr7.4:17058022-17058041 | None:intergenic | 35.0% | |
| GAAGGACCACTAATAACAAT+AGG | + | chr7.4:17058282-17058301 | None:intergenic | 35.0% | |
| GAGAAATATGGAGAAAGATG+GGG | - | chr7.4:17058392-17058411 | MS.gene014139:CDS | 35.0% | |
| GTGACATACTGTCAAACAAA+CGG | + | chr7.4:17057789-17057808 | None:intergenic | 35.0% | |
| TCACACTCTTCTCAGTAAAA+TGG | + | chr7.4:17058425-17058444 | None:intergenic | 35.0% | |
| TCATTGGTGCAGAAATTACT+GGG | - | chr7.4:17059346-17059365 | MS.gene014139:CDS | 35.0% | |
| TGGAACCTTTCTTAAGAACT+AGG | + | chr7.4:17058028-17058047 | None:intergenic | 35.0% | |
| TGGACAGACAAAGATGAATA+TGG | + | chr7.4:17059002-17059021 | None:intergenic | 35.0% | |
| TTAGACACTGAATGATCTGT+TGG | + | chr7.4:17059524-17059543 | None:intergenic | 35.0% | |
| TTCATTCTGAGTTCAGCTAA+AGG | - | chr7.4:17058693-17058712 | MS.gene014139:intron | 35.0% | |
| TTCATTGGTGCAGAAATTAC+TGG | - | chr7.4:17059345-17059364 | MS.gene014139:CDS | 35.0% | |
| ! | AGAGTGTTATGACAGACTTA+AGG | - | chr7.4:17059254-17059273 | MS.gene014139:intron | 35.0% |
| ! | AGTTCTTTTGGATCACCTTT+TGG | - | chr7.4:17059741-17059760 | MS.gene014139:CDS | 35.0% |
| ! | ATTGTTATTAGTGGTCCTTC+TGG | - | chr7.4:17058282-17058301 | MS.gene014139:intron | 35.0% |
| ! | CAAATTTTTGACCGTAGTCT+TGG | - | chr7.4:17057846-17057865 | MS.gene014139:CDS | 35.0% |
| ! | CTGTCCATGGTAATTTGTAT+GGG | - | chr7.4:17058487-17058506 | MS.gene014139:intron | 35.0% |
| ! | TCTGTCCATGGTAATTTGTA+TGG | - | chr7.4:17058486-17058505 | MS.gene014139:intron | 35.0% |
| !! | GATCTTGTATTTGACTTGAC+AGG | - | chr7.4:17059845-17059864 | MS.gene014139:intron | 35.0% |
| !! | TTTTACTGAGAAGAGTGTGA+TGG | - | chr7.4:17058425-17058444 | MS.gene014139:intron | 35.0% |
| !!! | GGACTTGATTTTCAAGTCAT+AGG | - | chr7.4:17059919-17059938 | MS.gene014139:intron | 35.0% |
| AACCACAACAACGTAATGAG+AGG | + | chr7.4:17058868-17058887 | None:intergenic | 40.0% | |
| AACCTCTCATTACGTTGTTG+TGG | - | chr7.4:17058863-17058882 | MS.gene014139:CDS | 40.0% | |
| AAGGAATTCCCTTCGATGTT+TGG | - | chr7.4:17058339-17058358 | MS.gene014139:CDS | 40.0% | |
| ACATACTGTCAAACAAACGG+AGG | + | chr7.4:17057786-17057805 | None:intergenic | 40.0% | |
| ACATTAAATCGTGGGTACAC+TGG | - | chr7.4:17058619-17058638 | MS.gene014139:intron | 40.0% | |
| AGGCAGCAGAGGAAAAAATT+GGG | - | chr7.4:17058207-17058226 | MS.gene014139:CDS | 40.0% | |
| AGGTGGACACTGAATATGTT+AGG | - | chr7.4:17058187-17058206 | MS.gene014139:CDS | 40.0% | |
| ATCATAAGCTGCATCTCTTC+TGG | - | chr7.4:17059560-17059579 | MS.gene014139:intron | 40.0% | |
| CAATATCAAGAATGCACCTC+TGG | + | chr7.4:17058937-17058956 | None:intergenic | 40.0% | |
| CAGAAATTACTGGGACTTGA+TGG | - | chr7.4:17059355-17059374 | MS.gene014139:CDS | 40.0% | |
| CCAAATCAGATGACCAGATA+TGG | - | chr7.4:17058045-17058064 | MS.gene014139:intron | 40.0% | |
| CCATATCTGGTCATCTGATT+TGG | + | chr7.4:17058048-17058067 | None:intergenic | 40.0% | |
| CCGAGAAATATGGAGAAAGA+TGG | - | chr7.4:17058390-17058409 | MS.gene014139:CDS | 40.0% | |
| CCTATGACTTCGAGAATGTA+AGG | - | chr7.4:17058774-17058793 | MS.gene014139:intron | 40.0% | |
| CCTTACATTCTCGAAGTCAT+AGG | + | chr7.4:17058777-17058796 | None:intergenic | 40.0% | |
| GCAAGACTTGTCGAAATCTA+TGG | + | chr7.4:17058668-17058687 | None:intergenic | 40.0% | |
| GCCTTACAAAAACAGCTATG+AGG | + | chr7.4:17057898-17057917 | None:intergenic | 40.0% | |
| GTCTGTCATAACACTCTTCA+AGG | + | chr7.4:17059251-17059270 | None:intergenic | 40.0% | |
| GTTTGACAGTATGTCACTGT+TGG | - | chr7.4:17057792-17057811 | MS.gene014139:CDS | 40.0% | |
| TACTGTCGTTGGCGAAAAAA+CGG | - | chr7.4:17057660-17057679 | MS.gene014139:intron | 40.0% | |
| TAGGCAGCAGAGGAAAAAAT+TGG | - | chr7.4:17058206-17058225 | MS.gene014139:CDS | 40.0% | |
| TCAAGGAGCAAGATCTGTTA+GGG | - | chr7.4:17058961-17058980 | MS.gene014139:CDS | 40.0% | |
| TGCAAAACAACTACTGTCGT+TGG | - | chr7.4:17057649-17057668 | MS.gene014139:intron | 40.0% | |
| TGGATGTTTCCTCACTGAAA+GGG | - | chr7.4:17059875-17059894 | MS.gene014139:intron | 40.0% | |
| TGGTCCCATACAAATTACCA+TGG | + | chr7.4:17058494-17058513 | None:intergenic | 40.0% | |
| TTCAAGGAGCAAGATCTGTT+AGG | - | chr7.4:17058960-17058979 | MS.gene014139:CDS | 40.0% | |
| TTCTCAAGCTCTTCCATTGA+TGG | + | chr7.4:17059025-17059044 | None:intergenic | 40.0% | |
| TTGGATGTTTCCTCACTGAA+AGG | - | chr7.4:17059874-17059893 | MS.gene014139:intron | 40.0% | |
| ! | CGGATCCTAGTTCTTAAGAA+AGG | - | chr7.4:17058020-17058039 | MS.gene014139:intron | 40.0% |
| ! | GAGGAAGTTTTTGCTTTAGC+AGG | + | chr7.4:17059287-17059306 | None:intergenic | 40.0% |
| ! | GTGGATTATAGCGTTGTTAG+AGG | - | chr7.4:17058832-17058851 | MS.gene014139:CDS | 40.0% |
| ! | GTTGGTAGATTAATCTCTCC+AGG | + | chr7.4:17059506-17059525 | None:intergenic | 40.0% |
| ! | TCACCTCTAGAAACCATATC+TGG | + | chr7.4:17058061-17058080 | None:intergenic | 40.0% |
| ! | TGACCAGATATGGTTTCTAG+AGG | - | chr7.4:17058055-17058074 | MS.gene014139:intron | 40.0% |
| ! | TTGACTTGACAGGATCATGT+TGG | - | chr7.4:17059855-17059874 | MS.gene014139:intron | 40.0% |
| !!! | GCCTCATAGCTGTTTTTGTA+AGG | - | chr7.4:17057894-17057913 | MS.gene014139:intron | 40.0% |
| !!! | TGTTTTAGCACTCAAGGGTA+AGG | - | chr7.4:17059818-17059837 | MS.gene014139:intron | 40.0% |
| ACCAAACCCTTGTCATGCAA+TGG | - | chr7.4:17057972-17057991 | MS.gene014139:CDS | 45.0% | |
| CATCCTGAAGGTCATCAACA+AGG | + | chr7.4:17057594-17057613 | None:intergenic | 45.0% | |
| CATCTCTTCTGGACTTGACA+AGG | - | chr7.4:17059571-17059590 | MS.gene014139:intron | 45.0% | |
| CATTAAGAGGTCCATCCTGA+AGG | + | chr7.4:17057606-17057625 | None:intergenic | 45.0% | |
| CTGAATATGTTAGGCAGCAG+AGG | - | chr7.4:17058196-17058215 | MS.gene014139:CDS | 45.0% | |
| CTGACCATTCTCCAAGACTA+CGG | + | chr7.4:17057860-17057879 | None:intergenic | 45.0% | |
| CTTCAGGATGGACCTCTTAA+TGG | - | chr7.4:17057604-17057623 | MS.gene014139:intron | 45.0% | |
| CTTTGTCTGTCCACCATCAA+TGG | - | chr7.4:17059009-17059028 | MS.gene014139:CDS | 45.0% | |
| GAGCCATTATTGCTGAACTG+TGG | - | chr7.4:17058813-17058832 | MS.gene014139:intron | 45.0% | |
| GAGGAAAAAATTGGGGACTG+AGG | - | chr7.4:17058215-17058234 | MS.gene014139:intron | 45.0% | |
| GAGTGTCCATTGCATGACAA+GGG | + | chr7.4:17057981-17058000 | None:intergenic | 45.0% | |
| GATGTTTCCTCACTGAAAGG+GGG | - | chr7.4:17059877-17059896 | MS.gene014139:intron | 45.0% | |
| GGATGTTTCCTCACTGAAAG+GGG | - | chr7.4:17059876-17059895 | MS.gene014139:intron | 45.0% | |
| GGCAGCAGAGGAAAAAATTG+GGG | - | chr7.4:17058208-17058227 | MS.gene014139:CDS | 45.0% | |
| GTTCCTTTACCAACTCCAGA+AGG | + | chr7.4:17058300-17058319 | None:intergenic | 45.0% | |
| GTTGAAGTGGTAACTGATGC+AGG | - | chr7.4:17058525-17058544 | MS.gene014139:intron | 45.0% | |
| GTTGCAACTGCACCCAAATT+AGG | - | chr7.4:17059382-17059401 | MS.gene014139:CDS | 45.0% | |
| TCAAGCTCTTCCATTGATGG+TGG | + | chr7.4:17059022-17059041 | None:intergenic | 45.0% | |
| TCCATTGCATGACAAGGGTT+TGG | + | chr7.4:17057976-17057995 | None:intergenic | 45.0% | |
| TCTCCATATTTCTCGGAGCA+CGG | + | chr7.4:17058386-17058405 | None:intergenic | 45.0% | |
| TGAGTGTCCATTGCATGACA+AGG | + | chr7.4:17057982-17058001 | None:intergenic | 45.0% | |
| TTTGTATGGGACCAGTGTTG+AGG | - | chr7.4:17058500-17058519 | MS.gene014139:intron | 45.0% | |
| ! | CTCGAATTTGCTTCTGTCCA+TGG | - | chr7.4:17058474-17058493 | MS.gene014139:intron | 45.0% |
| ! | GAGGTTGTTGCTTGGAGTAA+GGG | - | chr7.4:17058234-17058253 | MS.gene014139:intron | 45.0% |
| ! | GATCCGGTTTTCGAAAAGCA+CGG | + | chr7.4:17058006-17058025 | None:intergenic | 45.0% |
| ! | TGAGGTTGTTGCTTGGAGTA+AGG | - | chr7.4:17058233-17058252 | MS.gene014139:intron | 45.0% |
| ! | TTGACCGTAGTCTTGGAGAA+TGG | - | chr7.4:17057853-17057872 | MS.gene014139:intron | 45.0% |
| !! | ATTAGTGGTCCTTCTGGAGT+TGG | - | chr7.4:17058288-17058307 | MS.gene014139:intron | 45.0% |
| !! | CTTGTTGATGACCTTCAGGA+TGG | - | chr7.4:17057592-17057611 | MS.gene014139:intron | 45.0% |
| !! | GTTCCTTGTTGATGACCTTC+AGG | - | chr7.4:17057588-17057607 | MS.gene014139:intron | 45.0% |
| !! | TATTTAAAAATTAAAATATC+AGG | + | chr7.4:17058912-17058931 | None:intergenic | 5.0% |
| AAACAGAGGGACTGAGACTG+AGG | - | chr7.4:17059134-17059153 | MS.gene014139:CDS | 50.0% | |
| AAAGCGACTGCGTAATGCTC+AGG | - | chr7.4:17059167-17059186 | MS.gene014139:intron | 50.0% | |
| AACCCGTGCTCCGAGAAATA+TGG | - | chr7.4:17058380-17058399 | MS.gene014139:CDS | 50.0% | |
| AGGTCATCAACAAGGAACGC+TGG | + | chr7.4:17057586-17057605 | None:intergenic | 50.0% | |
| CACTTCAACAGCCTCAACAC+TGG | + | chr7.4:17058514-17058533 | None:intergenic | 50.0% | |
| CTCCATATTTCTCGGAGCAC+GGG | + | chr7.4:17058385-17058404 | None:intergenic | 50.0% | |
| GTCACTGTTGGAGCTGATGA+TGG | - | chr7.4:17057804-17057823 | MS.gene014139:CDS | 50.0% | |
| TCAAGTCCTCTTGTCCTTCC+AGG | + | chr7.4:17059907-17059926 | None:intergenic | 50.0% | |
| ! | CAGCCGTGCTTTTCGAAAAC+CGG | - | chr7.4:17058000-17058019 | MS.gene014139:intron | 50.0% |
| ! | CAGTGTTGAGGCTGTTGAAG+TGG | - | chr7.4:17058512-17058531 | MS.gene014139:intron | 50.0% |
| ! | GAGCATTACGCAGTCGCTTT+AGG | + | chr7.4:17059167-17059186 | None:intergenic | 50.0% |
| ! | GCTTGGAGTAAGGGTGTGAT+AGG | - | chr7.4:17058243-17058262 | MS.gene014139:intron | 50.0% |
| ! | TTAATCTCTCCAGGTGCTGC+TGG | + | chr7.4:17059497-17059516 | None:intergenic | 50.0% |
| !! | GGTCCTTCTGGAGTTGGTAA+AGG | - | chr7.4:17058294-17058313 | MS.gene014139:intron | 50.0% |
| !! | GTTTGGTGCCTAGCACAGTT+GGG | + | chr7.4:17057959-17057978 | None:intergenic | 50.0% |
| !!! | GGAGGCCCGGTTTTTGTTTT+AGG | + | chr7.4:17057768-17057787 | None:intergenic | 50.0% |
| AGGGTTCACCCAACTGTGCT+AGG | - | chr7.4:17057948-17057967 | MS.gene014139:intron | 55.0% | |
| ATCGTGGGTACACTGGTGTG+TGG | - | chr7.4:17058626-17058645 | MS.gene014139:intron | 55.0% | |
| CCACTACTCACCTGTCACGA+AGG | + | chr7.4:17059051-17059070 | None:intergenic | 55.0% | |
| CCTTCGTGACAGGTGAGTAG+TGG | - | chr7.4:17059048-17059067 | MS.gene014139:CDS | 55.0% | |
| CTGTCAAACAAACGGAGGCC+CGG | + | chr7.4:17057781-17057800 | None:intergenic | 55.0% | |
| GCTCAGGCTGAGATTGAGCA+AGG | - | chr7.4:17059183-17059202 | MS.gene014139:intron | 55.0% | |
| TCTGTCAATCCAGCAGCACC+TGG | - | chr7.4:17059485-17059504 | MS.gene014139:intron | 55.0% | |
| TGGGGACTGAGGTTGTTGCT+TGG | - | chr7.4:17058226-17058245 | MS.gene014139:intron | 55.0% | |
| !! | GGTTTGGTGCCTAGCACAGT+TGG | + | chr7.4:17057960-17057979 | None:intergenic | 55.0% |
| !! | TTGAGAAGCGCCTTCGTGAC+AGG | - | chr7.4:17059038-17059057 | MS.gene014139:CDS | 55.0% |
| AGGTGCACCCCCTTTCAGTG+AGG | + | chr7.4:17059887-17059906 | None:intergenic | 60.0% | |
| GGTGCACCTGGAAGGACAAG+AGG | - | chr7.4:17059898-17059917 | MS.gene014139:intron | 60.0% | |
| ! | TCACTGAAAGGGGGTGCACC+TGG | - | chr7.4:17059886-17059905 | MS.gene014139:intron | 60.0% |
| ! | TGAAAGGGGGTGCACCTGGA+AGG | - | chr7.4:17059890-17059909 | MS.gene014139:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 17057404 | 17059963 | 17057404 | ID=MS.gene014139 |
| chr7.4 | mRNA | 17057404 | 17059963 | 17057404 | ID=MS.gene014139.t1;Parent=MS.gene014139 |
| chr7.4 | exon | 17059961 | 17059963 | 17059961 | ID=MS.gene014139.t1.exon1;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17059961 | 17059963 | 17059961 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17059686 | 17059793 | 17059686 | ID=MS.gene014139.t1.exon2;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17059686 | 17059793 | 17059686 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17059493 | 17059566 | 17059493 | ID=MS.gene014139.t1.exon3;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17059493 | 17059566 | 17059493 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17059291 | 17059417 | 17059291 | ID=MS.gene014139.t1.exon4;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17059291 | 17059417 | 17059291 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17058816 | 17059178 | 17058816 | ID=MS.gene014139.t1.exon5;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17058816 | 17059178 | 17058816 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17058308 | 17058429 | 17058308 | ID=MS.gene014139.t1.exon6;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17058308 | 17058429 | 17058308 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17058092 | 17058227 | 17058092 | ID=MS.gene014139.t1.exon7;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17058092 | 17058227 | 17058092 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17057964 | 17058009 | 17057964 | ID=MS.gene014139.t1.exon8;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17057964 | 17058009 | 17057964 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17057761 | 17057869 | 17057761 | ID=MS.gene014139.t1.exon9;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17057761 | 17057869 | 17057761 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| chr7.4 | exon | 17057404 | 17057500 | 17057404 | ID=MS.gene014139.t1.exon10;Parent=MS.gene014139.t1 |
| chr7.4 | CDS | 17057404 | 17057500 | 17057404 | ID=cds.MS.gene014139.t1;Parent=MS.gene014139.t1 |
| Gene Sequence |
| Protein sequence |
