Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072328.t1 | KEH23662.1 | 99.4 | 360 | 2 | 0 | 1 | 360 | 2 | 361 | 5.40E-202 | 713.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072328.t1 | Q9M682 | 68.1 | 357 | 109 | 4 | 1 | 353 | 2 | 357 | 4.7e-130 | 465.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072328.t1 | A0A072U1T9 | 99.4 | 360 | 2 | 0 | 1 | 360 | 2 | 361 | 3.9e-202 | 713.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072328 | 0.818347 | 2.06E-52 | -1.69E-46 |
| MS.gene049166 | MS.gene072328 | 0.81573 | 7.96E-52 | -1.69E-46 |
| MS.gene049368 | MS.gene072328 | 0.828983 | 6.64E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene072328 | 0.816185 | 6.30E-52 | -1.69E-46 |
| MS.gene050084 | MS.gene072328 | 0.803565 | 3.28E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene072328 | 0.822757 | 2.00E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene072328 | 0.831161 | 1.95E-55 | -1.69E-46 |
| MS.gene050317 | MS.gene072328 | 0.804584 | 2.01E-49 | -1.69E-46 |
| MS.gene050359 | MS.gene072328 | 0.815773 | 7.78E-52 | -1.69E-46 |
| MS.gene050551 | MS.gene072328 | 0.807399 | 5.15E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene072328 | 0.857462 | 1.61E-62 | -1.69E-46 |
| MS.gene050689 | MS.gene072328 | 0.814667 | 1.37E-51 | -1.69E-46 |
| MS.gene050737 | MS.gene072328 | 0.807534 | 4.82E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene072328 | 0.856322 | 3.48E-62 | -1.69E-46 |
| MS.gene050931 | MS.gene072328 | 0.81191 | 5.53E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene072328 | 0.845502 | 3.90E-59 | -1.69E-46 |
| MS.gene051003 | MS.gene072328 | 0.864946 | 8.43E-65 | -1.69E-46 |
| MS.gene051184 | MS.gene072328 | 0.813777 | 2.16E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene072328 | 0.828531 | 8.54E-55 | -1.69E-46 |
| MS.gene051343 | MS.gene072328 | 0.830997 | 2.14E-55 | -1.69E-46 |
| MS.gene051381 | MS.gene072328 | 0.808969 | 2.38E-50 | -1.69E-46 |
| MS.gene051676 | MS.gene072328 | 0.803228 | 3.85E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene072328 | 0.804131 | 2.50E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene072328 | 0.833048 | 6.67E-56 | -1.69E-46 |
| MS.gene052342 | MS.gene072328 | 0.833748 | 4.46E-56 | -1.69E-46 |
| MS.gene052434 | MS.gene072328 | 0.848508 | 5.86E-60 | -1.69E-46 |
| MS.gene052609 | MS.gene072328 | 0.818253 | 2.16E-52 | -1.69E-46 |
| MS.gene053058 | MS.gene072328 | 0.844439 | 7.55E-59 | -1.69E-46 |
| MS.gene053167 | MS.gene072328 | 0.807069 | 6.05E-50 | -1.69E-46 |
| MS.gene053381 | MS.gene072328 | 0.833597 | 4.87E-56 | -1.69E-46 |
| MS.gene053564 | MS.gene072328 | 0.841285 | 5.21E-58 | -1.69E-46 |
| MS.gene053786 | MS.gene072328 | 0.826949 | 2.05E-54 | -1.69E-46 |
| MS.gene053895 | MS.gene072328 | -0.810438 | 1.15E-50 | -1.69E-46 |
| MS.gene054823 | MS.gene072328 | 0.815205 | 1.04E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene072328 | 0.800676 | 1.29E-48 | -1.69E-46 |
| MS.gene055311 | MS.gene072328 | 0.848228 | 7.01E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene072328 | 0.820501 | 6.63E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene072328 | 0.818631 | 1.77E-52 | -1.69E-46 |
| MS.gene055513 | MS.gene072328 | 0.850929 | 1.24E-60 | -1.69E-46 |
| MS.gene055864 | MS.gene072328 | 0.822255 | 2.61E-53 | -1.69E-46 |
| MS.gene056097 | MS.gene072328 | 0.823336 | 1.46E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene072328 | 0.857024 | 2.16E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene072328 | 0.813296 | 2.75E-51 | -1.69E-46 |
| MS.gene056752 | MS.gene072328 | 0.803666 | 3.13E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene072328 | 0.827268 | 1.72E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene072328 | 0.831617 | 1.51E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene072328 | 0.816582 | 5.14E-52 | -1.69E-46 |
| MS.gene056992 | MS.gene072328 | 0.826862 | 2.15E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene072328 | -0.823914 | 1.07E-53 | -1.69E-46 |
| MS.gene058261 | MS.gene072328 | 0.807344 | 5.29E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene072328 | 0.802617 | 5.15E-49 | -1.69E-46 |
| MS.gene058639 | MS.gene072328 | 0.803204 | 3.90E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene072328 | 0.828093 | 1.09E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene072328 | 0.822801 | 1.95E-53 | -1.69E-46 |
| MS.gene058720 | MS.gene072328 | 0.802336 | 5.89E-49 | -1.69E-46 |
| MS.gene058758 | MS.gene072328 | 0.843873 | 1.07E-58 | -1.69E-46 |
| MS.gene05880 | MS.gene072328 | 0.812796 | 3.54E-51 | -1.69E-46 |
| MS.gene059007 | MS.gene072328 | 0.803694 | 3.08E-49 | -1.69E-46 |
| MS.gene059146 | MS.gene072328 | 0.813711 | 2.23E-51 | -1.69E-46 |
| MS.gene059170 | MS.gene072328 | 0.82648 | 2.65E-54 | -1.69E-46 |
| MS.gene059360 | MS.gene072328 | 0.807435 | 5.06E-50 | -1.69E-46 |
| MS.gene06010 | MS.gene072328 | 0.848732 | 5.08E-60 | -1.69E-46 |
| MS.gene06011 | MS.gene072328 | 0.844798 | 6.05E-59 | -1.69E-46 |
| MS.gene060259 | MS.gene072328 | 0.808984 | 2.37E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene072328 | 0.835755 | 1.39E-56 | -1.69E-46 |
| MS.gene060563 | MS.gene072328 | 0.812641 | 3.83E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene072328 | 0.802675 | 5.01E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene072328 | 0.824716 | 6.94E-54 | -1.69E-46 |
| MS.gene061006 | MS.gene072328 | 0.829797 | 4.21E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene072328 | 0.84313 | 1.69E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072328 | MS.gene072329 | PPI |
| MS.gene072328 | MS.gene04860 | PPI |
| MS.gene072328 | MS.gene00617 | PPI |
| MS.gene072328 | MS.gene00843 | PPI |
| MS.gene04859 | MS.gene072328 | PPI |
| MS.gene072328 | MS.gene017918 | PPI |
| MS.gene072328 | MS.gene002926 | PPI |
| MS.gene072328 | MS.gene072058 | PPI |
| MS.gene072328 | MS.gene04879 | PPI |
| MS.gene072328 | MS.gene047200 | PPI |
| MS.gene01884 | MS.gene072328 | PPI |
| MS.gene047966 | MS.gene072328 | PPI |
| MS.gene014139 | MS.gene072328 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072328.t1 | MTR_7g092020 | 99.444 | 360 | 2 | 0 | 1 | 360 | 2 | 361 | 0.0 | 736 |
| MS.gene072328.t1 | MTR_7g092020 | 99.169 | 361 | 2 | 1 | 1 | 360 | 2 | 362 | 0.0 | 732 |
| MS.gene072328.t1 | MTR_7g092020 | 99.331 | 299 | 2 | 0 | 62 | 360 | 15 | 313 | 0.0 | 613 |
| MS.gene072328.t1 | MTR_7g092020 | 99.000 | 300 | 2 | 1 | 62 | 360 | 15 | 314 | 0.0 | 608 |
| MS.gene072328.t1 | MTR_0374s0010 | 82.000 | 100 | 18 | 0 | 225 | 324 | 1 | 100 | 1.07e-53 | 172 |
| MS.gene072328.t1 | MTR_2g021320 | 36.747 | 166 | 100 | 3 | 135 | 299 | 91 | 252 | 2.07e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072328.t1 | AT3G57550 | 68.067 | 357 | 110 | 3 | 1 | 353 | 2 | 358 | 8.23e-171 | 481 |
| MS.gene072328.t1 | AT3G57550 | 68.067 | 357 | 109 | 4 | 1 | 353 | 2 | 357 | 9.41e-170 | 478 |
| MS.gene072328.t1 | AT3G57550 | 68.067 | 357 | 109 | 4 | 1 | 353 | 2 | 357 | 9.41e-170 | 478 |
| MS.gene072328.t1 | AT2G41880 | 68.376 | 351 | 106 | 4 | 1 | 347 | 2 | 351 | 9.81e-165 | 464 |
| MS.gene072328.t1 | AT2G41880 | 68.376 | 351 | 106 | 4 | 1 | 347 | 2 | 351 | 9.81e-165 | 464 |
| MS.gene072328.t1 | AT2G41880 | 68.376 | 351 | 106 | 4 | 1 | 347 | 2 | 351 | 2.25e-164 | 465 |
| MS.gene072328.t1 | AT2G41880 | 68.376 | 351 | 106 | 4 | 1 | 347 | 2 | 351 | 2.25e-164 | 465 |
| MS.gene072328.t1 | AT2G41880 | 70.497 | 322 | 91 | 3 | 1 | 318 | 2 | 323 | 4.40e-158 | 447 |
| MS.gene072328.t1 | AT2G41880 | 63.158 | 380 | 106 | 5 | 1 | 347 | 2 | 380 | 1.41e-157 | 449 |
| MS.gene072328.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 1.29e-153 | 435 |
| MS.gene072328.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 2.10e-153 | 435 |
| MS.gene072328.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 2.10e-153 | 435 |
| MS.gene072328.t1 | AT3G06200 | 32.418 | 182 | 116 | 4 | 135 | 313 | 91 | 268 | 1.14e-20 | 90.9 |
Find 81 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGCACCCAAATT+AGG | 0.227947 | 7.2:-16997570 | MS.gene072328:intron |
| CTTCAGGATGGACCTCTTAA+TGG | 0.276233 | 7.2:-16999348 | MS.gene072328:CDS |
| ATTGTTATTAGTGGTCCTTC+TGG | 0.288971 | 7.2:-16998670 | MS.gene072328:CDS |
| TTCTCAAGCTCTTCCATTGA+TGG | 0.297823 | 7.2:+16997930 | None:intergenic |
| GAGCATTACGCAGTCGCTTT+AGG | 0.302663 | 7.2:+16997788 | None:intergenic |
| CCATATCTGGTCATCTGATT+TGG | 0.313449 | 7.2:+16998907 | None:intergenic |
| CCATCTTTCTCCATATTTCT+CGG | 0.318499 | 7.2:+16998562 | None:intergenic |
| TCACACTCTTCTCAGTAAAA+TGG | 0.321682 | 7.2:+16998530 | None:intergenic |
| CCAAATCAGATGACCAGATA+TGG | 0.340254 | 7.2:-16998907 | MS.gene072328:CDS |
| AAGGAATTCCCTTCGATGTT+TGG | 0.340728 | 7.2:-16998613 | MS.gene072328:CDS |
| AACCCGTGCTCCGAGAAATA+TGG | 0.350022 | 7.2:-16998572 | MS.gene072328:CDS |
| CAGAAATTACTGGGACTTGA+TGG | 0.358399 | 7.2:-16997597 | MS.gene072328:CDS |
| GTTCCTTGTTGATGACCTTC+AGG | 0.367183 | 7.2:-16999364 | MS.gene072328:CDS |
| ATCATAAGCTGCATCTCTTC+TGG | 0.369022 | 7.2:-16997392 | MS.gene072328:CDS |
| TTCATTGGTGCAGAAATTAC+TGG | 0.369583 | 7.2:-16997607 | MS.gene072328:intron |
| TCTGTCCATGGTAATTTGTA+TGG | 0.376553 | 7.2:-16998466 | MS.gene072328:CDS |
| CTCGAATTTGCTTCTGTCCA+TGG | 0.403156 | 7.2:-16998478 | MS.gene072328:CDS |
| GAGAAACCTATTGTTATTAG+TGG | 0.405407 | 7.2:-16998679 | MS.gene072328:CDS |
| ATTCTTGATATTGATGTTCA+AGG | 0.419974 | 7.2:-16998008 | MS.gene072328:CDS |
| TTCAAGGAGCAAGATCTGTT+AGG | 0.421033 | 7.2:-16997992 | MS.gene072328:CDS |
| GTCTGTCATAACACTCTTCA+AGG | 0.422735 | 7.2:+16997704 | None:intergenic |
| TGAGGTTGTTGCTTGGAGTA+AGG | 0.423659 | 7.2:-16998719 | MS.gene072328:CDS |
| TGGACAGACAAAGATGAATA+TGG | 0.427437 | 7.2:+16997953 | None:intergenic |
| TGGAACCTTTCTTAAGAACT+AGG | 0.427990 | 7.2:+16998927 | None:intergenic |
| CTTTGTCTGTCCACCATCAA+TGG | 0.430337 | 7.2:-16997943 | MS.gene072328:CDS |
| GAAGGACCACTAATAACAAT+AGG | 0.431055 | 7.2:+16998673 | None:intergenic |
| ATTAGTGGTCCTTCTGGAGT+TGG | 0.435618 | 7.2:-16998664 | MS.gene072328:CDS |
| CTCCATATTTCTCGGAGCAC+GGG | 0.445632 | 7.2:+16998570 | None:intergenic |
| CGGATCCTAGTTCTTAAGAA+AGG | 0.451808 | 7.2:-16998932 | MS.gene072328:CDS |
| TCTCCATATTTCTCGGAGCA+CGG | 0.454075 | 7.2:+16998569 | None:intergenic |
| GGTTTGGTGCCTAGCACAGT+TGG | 0.455219 | 7.2:+16998995 | None:intergenic |
| TTCAATTCAAGACCATTAAG+AGG | 0.459949 | 7.2:+16999336 | None:intergenic |
| CTTTCTTAAGAACTAGGATC+CGG | 0.474576 | 7.2:+16998933 | None:intergenic |
| TTGAGAAGCGCCTTCGTGAC+AGG | 0.480044 | 7.2:-16997914 | MS.gene072328:intron |
| TCCATTGCATGACAAGGGTT+TGG | 0.480420 | 7.2:+16998979 | None:intergenic |
| TCTTCTCAGTAAAATGGTAA+TGG | 0.482341 | 7.2:+16998536 | None:intergenic |
| TTGACCGTAGTCTTGGAGAA+TGG | 0.486043 | 7.2:-16999099 | MS.gene072328:intron |
| CTGTCCATGGTAATTTGTAT+GGG | 0.487223 | 7.2:-16998465 | MS.gene072328:CDS |
| CTTGTTGATGACCTTCAGGA+TGG | 0.487351 | 7.2:-16999360 | MS.gene072328:CDS |
| TCACCTCTAGAAACCATATC+TGG | 0.487464 | 7.2:+16998894 | None:intergenic |
| CGAGAAATATGGAGAAAGAT+GGG | 0.489516 | 7.2:-16998561 | MS.gene072328:CDS |
| CCGAGAAATATGGAGAAAGA+TGG | 0.490569 | 7.2:-16998562 | MS.gene072328:CDS |
| GTTTGACAGTATGTCACTGT+TGG | 0.492792 | 7.2:-16999160 | MS.gene072328:intron |
| ATGGAGAAAGAGATCAAAAG+TGG | 0.501117 | 7.2:-16998508 | MS.gene072328:CDS |
| GAGGTTGTTGCTTGGAGTAA+GGG | 0.507302 | 7.2:-16998718 | MS.gene072328:CDS |
| AAAGCGACTGCGTAATGCTC+AGG | 0.512562 | 7.2:-16997785 | MS.gene072328:CDS |
| GGTCCTTCTGGAGTTGGTAA+AGG | 0.512799 | 7.2:-16998658 | MS.gene072328:CDS |
| GTTTGGTGCCTAGCACAGTT+GGG | 0.517021 | 7.2:+16998996 | None:intergenic |
| ACTAATATCAATGCTCATGA+AGG | 0.517312 | 7.2:-16998632 | MS.gene072328:CDS |
| GCTTGGAGTAAGGGTGTGAT+AGG | 0.517396 | 7.2:-16998709 | MS.gene072328:CDS |
| TCAAGGAGCAAGATCTGTTA+GGG | 0.522205 | 7.2:-16997991 | MS.gene072328:CDS |
| TTAGACACTGAATGATCTGT+TGG | 0.523783 | 7.2:+16997431 | None:intergenic |
| GTCACTGTTGGAGCTGATGA+TGG | 0.527989 | 7.2:-16999148 | MS.gene072328:CDS |
| AGAGTGTTATGACAGACTTA+AGG | 0.531515 | 7.2:-16997698 | MS.gene072328:intron |
| GTTGAAGTGGTAGCTGATGC+AGG | 0.538538 | 7.2:-16998427 | MS.gene072328:CDS |
| TGGGGACTGAGGTTGTTGCT+TGG | 0.545642 | 7.2:-16998726 | MS.gene072328:CDS |
| GTTGGTAGATTAATCTCTCT+AGG | 0.546143 | 7.2:+16997449 | None:intergenic |
| TGCAAAACAACTACTGTCGT+TGG | 0.554632 | 7.2:-16999303 | MS.gene072328:CDS |
| TCAAGCTCTTCCATTGATGG+TGG | 0.563601 | 7.2:+16997933 | None:intergenic |
| AGGGTTCACCCAACTGTGCT+AGG | 0.568022 | 7.2:-16999004 | MS.gene072328:CDS |
| CATCTCTTCTGGACTTGACA+AGG | 0.573859 | 7.2:-16997381 | MS.gene072328:CDS |
| AATGGTCTTGAATTGAACAA+TGG | 0.577419 | 7.2:-16999330 | MS.gene072328:CDS |
| TCATTGGTGCAGAAATTACT+GGG | 0.585295 | 7.2:-16997606 | MS.gene072328:intron |
| ACCAAACCCTTGTCATGCAA+TGG | 0.601097 | 7.2:-16998980 | MS.gene072328:CDS |
| AAACAGAGGGACTGAGACTG+AGG | 0.601275 | 7.2:-16997818 | MS.gene072328:intron |
| CAGTGTTGAGGCTGTTGAAG+TGG | 0.604055 | 7.2:-16998440 | MS.gene072328:CDS |
| CATTAAGAGGTCCATCCTGA+AGG | 0.605764 | 7.2:+16999349 | None:intergenic |
| TGAGTGTCCATTGCATGACA+AGG | 0.606716 | 7.2:+16998973 | None:intergenic |
| CTGACCATTCTCCAAGACTA+CGG | 0.617954 | 7.2:+16999095 | None:intergenic |
| CATCCTGAAGGTCATCAACA+AGG | 0.626232 | 7.2:+16999361 | None:intergenic |
| CACTTCAACAGCCTCAACAC+TGG | 0.628025 | 7.2:+16998441 | None:intergenic |
| GCTCAGGCTGAGATTGAGCA+AGG | 0.631772 | 7.2:-16997769 | MS.gene072328:CDS |
| GTTCCTTTACCAACTCCAGA+AGG | 0.638608 | 7.2:+16998655 | None:intergenic |
| TGACCAGATATGGTTTCTAG+AGG | 0.640137 | 7.2:-16998897 | MS.gene072328:intron |
| GAGTGTCCATTGCATGACAA+GGG | 0.640152 | 7.2:+16998974 | None:intergenic |
| CTGAATATGTTAGACAGCAG+AGG | 0.642982 | 7.2:-16998756 | MS.gene072328:CDS |
| CCACTACTCACCTGTCACGA+AGG | 0.647896 | 7.2:+16997904 | None:intergenic |
| TGGTCCCATACAAATTACCA+TGG | 0.653492 | 7.2:+16998461 | None:intergenic |
| AGGTCATCAACAAGGAACGC+TGG | 0.660018 | 7.2:+16999369 | None:intergenic |
| GAGAAATATGGAGAAAGATG+GGG | 0.669595 | 7.2:-16998560 | MS.gene072328:CDS |
| TTTGTATGGGACCAGTGTTG+AGG | 0.692634 | 7.2:-16998452 | MS.gene072328:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCTTACCTAATT+TGG | + | chr7.2:16999192-16999211 | None:intergenic | 15.0% |
| !! | AAAAAATTCTTACCTAATTT+GGG | + | chr7.2:16999191-16999210 | None:intergenic | 15.0% |
| !!! | ATTAAGTTAAGACTAAATTT+TGG | + | chr7.2:16998901-16998920 | None:intergenic | 15.0% |
| !!! | TAAATGCTAATTTGTTTTAT+TGG | - | chr7.2:16997954-16997973 | MS.gene072328:CDS | 15.0% |
| !!! | TTAATTTTTAAATATTCCAG+AGG | - | chr7.2:16998712-16998731 | MS.gene072328:CDS | 15.0% |
| !! | ATATTAGAACATTAAATCGT+GGG | - | chr7.2:16998405-16998424 | MS.gene072328:intron | 20.0% |
| !!! | AATCAATTCTAAAAACTTCA+AGG | + | chr7.2:16998534-16998553 | None:intergenic | 20.0% |
| !!! | AATTCATTTTATTTGAAGCT+TGG | - | chr7.2:16998382-16998401 | MS.gene072328:intron | 20.0% |
| !!! | TAATTTGTTTTATTGGTACT+AGG | - | chr7.2:16997961-16997980 | MS.gene072328:CDS | 20.0% |
| !!! | TTTGTTACTGATATTCATTT+TGG | - | chr7.2:16997714-16997733 | MS.gene072328:CDS | 20.0% |
| !!! | TTTTTGTTTTAGGCATAAAT+TGG | + | chr7.2:16997552-16997571 | None:intergenic | 20.0% |
| ! | ATTCTTGATATTGATGTTCA+AGG | - | chr7.2:16998738-16998757 | MS.gene072328:CDS | 25.0% |
| ! | CTGAAAATTTACATTCAGTT+TGG | + | chr7.2:16999221-16999240 | None:intergenic | 25.0% |
| ! | GATATTAGAACATTAAATCG+TGG | - | chr7.2:16998404-16998423 | MS.gene072328:intron | 25.0% |
| ! | TTTATGCCTAAAACAAAAAC+CGG | - | chr7.2:16997553-16997572 | MS.gene072328:intron | 25.0% |
| !!! | ACTTAATGTTTTGAAAACAG+AGG | - | chr7.2:16998914-16998933 | MS.gene072328:CDS | 25.0% |
| !!! | CTTAATGTTTTGAAAACAGA+GGG | - | chr7.2:16998915-16998934 | MS.gene072328:CDS | 25.0% |
| ACTAATATCAATGCTCATGA+AGG | - | chr7.2:16998114-16998133 | MS.gene072328:intron | 30.0% | |
| CATGTTAGTATTTACCTTCA+TGG | + | chr7.2:16999253-16999272 | None:intergenic | 30.0% | |
| CCAATGAACATACGTATATT+AGG | + | chr7.2:16999127-16999146 | None:intergenic | 30.0% | |
| CCTAATATACGTATGTTCAT+TGG | - | chr7.2:16999124-16999143 | MS.gene072328:CDS | 30.0% | |
| GGTAAGAAATTGTCGTAATT+CGG | + | chr7.2:16998685-16998704 | None:intergenic | 30.0% | |
| GTCAAAAATTTGAACGTCAA+TGG | + | chr7.2:16997632-16997651 | None:intergenic | 30.0% | |
| TCTTCTCAGTAAAATGGTAA+TGG | + | chr7.2:16998213-16998232 | None:intergenic | 30.0% | |
| TGTCGAAATCTATGGTAATT+TGG | + | chr7.2:16998454-16998473 | None:intergenic | 30.0% | |
| TTATGCCTAAAACAAAAACC+GGG | - | chr7.2:16997554-16997573 | MS.gene072328:intron | 30.0% | |
| TTCAATTCAAGACCATTAAG+AGG | + | chr7.2:16997413-16997432 | None:intergenic | 30.0% | |
| TTCAGTTTATAAAGCCATGA+AGG | - | chr7.2:16999236-16999255 | MS.gene072328:intron | 30.0% | |
| ! | AATGGTCTTGAATTGAACAA+TGG | - | chr7.2:16997416-16997435 | MS.gene072328:CDS | 30.0% |
| ! | GAGAAACCTATTGTTATTAG+TGG | - | chr7.2:16998067-16998086 | MS.gene072328:intron | 30.0% |
| ! | GATATTCATTTTGGATTGCA+GGG | - | chr7.2:16997723-16997742 | MS.gene072328:CDS | 30.0% |
| ! | TGATATTCATTTTGGATTGC+AGG | - | chr7.2:16997722-16997741 | MS.gene072328:CDS | 30.0% |
| !! | AGGATGATAAGAACTTTTTC+AGG | + | chr7.2:16999107-16999126 | None:intergenic | 30.0% |
| !!! | TAAGAACTTTTTCAGGATTG+AGG | + | chr7.2:16999100-16999119 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATTGGTACTAGG+TGG | - | chr7.2:16997964-16997983 | MS.gene072328:CDS | 30.0% |
| AATCCACAGTTCAGCAATAA+TGG | + | chr7.2:16998613-16998632 | None:intergenic | 35.0% | |
| ACAGAAAAACCAAACATCGA+AGG | + | chr7.2:16998145-16998164 | None:intergenic | 35.0% | |
| AGACAGCAGAGGAAAAAATT+GGG | - | chr7.2:16998001-16998020 | MS.gene072328:CDS | 35.0% | |
| ATGGAGAAAGAGATCAAAAG+TGG | - | chr7.2:16998238-16998257 | MS.gene072328:intron | 35.0% | |
| CAGAAAAACCAAACATCGAA+GGG | + | chr7.2:16998144-16998163 | None:intergenic | 35.0% | |
| CCATCTTTCTCCATATTTCT+CGG | + | chr7.2:16998187-16998206 | None:intergenic | 35.0% | |
| CGAGAAATATGGAGAAAGAT+GGG | - | chr7.2:16998185-16998204 | MS.gene072328:intron | 35.0% | |
| CTTTCTTAAGAACTAGGATC+CGG | + | chr7.2:16997816-16997835 | None:intergenic | 35.0% | |
| GAAGGACCACTAATAACAAT+AGG | + | chr7.2:16998076-16998095 | None:intergenic | 35.0% | |
| GAGAAATATGGAGAAAGATG+GGG | - | chr7.2:16998186-16998205 | MS.gene072328:intron | 35.0% | |
| GTGACATACTGTCAAACAAA+CGG | + | chr7.2:16997583-16997602 | None:intergenic | 35.0% | |
| TAGACAGCAGAGGAAAAAAT+TGG | - | chr7.2:16998000-16998019 | MS.gene072328:CDS | 35.0% | |
| TCACACTCTTCTCAGTAAAA+TGG | + | chr7.2:16998219-16998238 | None:intergenic | 35.0% | |
| TCATTGGTGCAGAAATTACT+GGG | - | chr7.2:16999140-16999159 | MS.gene072328:CDS | 35.0% | |
| TGACAAGGAGTCAAAGAATT+CGG | - | chr7.2:16999380-16999399 | MS.gene072328:CDS | 35.0% | |
| TGGAACCTTTCTTAAGAACT+AGG | + | chr7.2:16997822-16997841 | None:intergenic | 35.0% | |
| TGGACAGACAAAGATGAATA+TGG | + | chr7.2:16998796-16998815 | None:intergenic | 35.0% | |
| TTAGACACTGAATGATCTGT+TGG | + | chr7.2:16999318-16999337 | None:intergenic | 35.0% | |
| TTCATTCTGAGTTCAGCTAA+AGG | - | chr7.2:16998487-16998506 | MS.gene072328:CDS | 35.0% | |
| TTCATTGGTGCAGAAATTAC+TGG | - | chr7.2:16999139-16999158 | MS.gene072328:CDS | 35.0% | |
| ! | AGAGTGTTATGACAGACTTA+AGG | - | chr7.2:16999048-16999067 | MS.gene072328:intron | 35.0% |
| ! | ATTGTTATTAGTGGTCCTTC+TGG | - | chr7.2:16998076-16998095 | MS.gene072328:intron | 35.0% |
| ! | CAAATTTTTGACCGTAGTCT+TGG | - | chr7.2:16997640-16997659 | MS.gene072328:intron | 35.0% |
| ! | CTGTCCATGGTAATTTGTAT+GGG | - | chr7.2:16998281-16998300 | MS.gene072328:intron | 35.0% |
| ! | GTTGGTAGATTAATCTCTCT+AGG | + | chr7.2:16999300-16999319 | None:intergenic | 35.0% |
| ! | TCTGTCCATGGTAATTTGTA+TGG | - | chr7.2:16998280-16998299 | MS.gene072328:intron | 35.0% |
| !! | TTTTACTGAGAAGAGTGTGA+TGG | - | chr7.2:16998219-16998238 | MS.gene072328:intron | 35.0% |
| AACCACAACAACGTAATGAG+AGG | + | chr7.2:16998662-16998681 | None:intergenic | 40.0% | |
| AACCTCTCATTACGTTGTTG+TGG | - | chr7.2:16998657-16998676 | MS.gene072328:CDS | 40.0% | |
| AAGGAATTCCCTTCGATGTT+TGG | - | chr7.2:16998133-16998152 | MS.gene072328:intron | 40.0% | |
| ACATACTGTCAAACAAACGG+AGG | + | chr7.2:16997580-16997599 | None:intergenic | 40.0% | |
| ACATTAAATCGTGGGTACAC+TGG | - | chr7.2:16998413-16998432 | MS.gene072328:intron | 40.0% | |
| ATCATAAGCTGCATCTCTTC+TGG | - | chr7.2:16999354-16999373 | MS.gene072328:CDS | 40.0% | |
| CAATATCAAGAATGCACCTC+TGG | + | chr7.2:16998731-16998750 | None:intergenic | 40.0% | |
| CAGAAATTACTGGGACTTGA+TGG | - | chr7.2:16999149-16999168 | MS.gene072328:CDS | 40.0% | |
| CCAAATCAGATGACCAGATA+TGG | - | chr7.2:16997839-16997858 | MS.gene072328:intron | 40.0% | |
| CCATATCTGGTCATCTGATT+TGG | + | chr7.2:16997842-16997861 | None:intergenic | 40.0% | |
| CCGAGAAATATGGAGAAAGA+TGG | - | chr7.2:16998184-16998203 | MS.gene072328:intron | 40.0% | |
| CCTATGACTTCGAGAATGTA+AGG | - | chr7.2:16998568-16998587 | MS.gene072328:CDS | 40.0% | |
| CCTTACATTCTCGAAGTCAT+AGG | + | chr7.2:16998571-16998590 | None:intergenic | 40.0% | |
| CTGAATATGTTAGACAGCAG+AGG | - | chr7.2:16997990-16998009 | MS.gene072328:CDS | 40.0% | |
| GACAGCAGAGGAAAAAATTG+GGG | - | chr7.2:16998002-16998021 | MS.gene072328:CDS | 40.0% | |
| GCAAGACTTGTCGAAATCTA+TGG | + | chr7.2:16998462-16998481 | None:intergenic | 40.0% | |
| GCCTTACAAAAACAGCTATG+AGG | + | chr7.2:16997692-16997711 | None:intergenic | 40.0% | |
| GTCTGTCATAACACTCTTCA+AGG | + | chr7.2:16999045-16999064 | None:intergenic | 40.0% | |
| GTTTGACAGTATGTCACTGT+TGG | - | chr7.2:16997586-16997605 | MS.gene072328:CDS | 40.0% | |
| TACTGTCGTTGGCGAAAAAA+CGG | - | chr7.2:16997454-16997473 | MS.gene072328:CDS | 40.0% | |
| TCAAGGAGCAAGATCTGTTA+GGG | - | chr7.2:16998755-16998774 | MS.gene072328:CDS | 40.0% | |
| TGCAAAACAACTACTGTCGT+TGG | - | chr7.2:16997443-16997462 | MS.gene072328:CDS | 40.0% | |
| TGGTCCCATACAAATTACCA+TGG | + | chr7.2:16998288-16998307 | None:intergenic | 40.0% | |
| TTCAAGGAGCAAGATCTGTT+AGG | - | chr7.2:16998754-16998773 | MS.gene072328:CDS | 40.0% | |
| TTCTCAAGCTCTTCCATTGA+TGG | + | chr7.2:16998819-16998838 | None:intergenic | 40.0% | |
| ! | CGGATCCTAGTTCTTAAGAA+AGG | - | chr7.2:16997814-16997833 | MS.gene072328:CDS | 40.0% |
| ! | GAGGAAGTTTTTGCTTTAGC+AGG | + | chr7.2:16999081-16999100 | None:intergenic | 40.0% |
| ! | GTGGATTATAGCGTTGTTAG+AGG | - | chr7.2:16998626-16998645 | MS.gene072328:CDS | 40.0% |
| ! | TCACCTCTAGAAACCATATC+TGG | + | chr7.2:16997855-16997874 | None:intergenic | 40.0% |
| ! | TGACCAGATATGGTTTCTAG+AGG | - | chr7.2:16997849-16997868 | MS.gene072328:intron | 40.0% |
| !!! | GCCTCATAGCTGTTTTTGTA+AGG | - | chr7.2:16997688-16997707 | MS.gene072328:intron | 40.0% |
| ACCAAACCCTTGTCATGCAA+TGG | - | chr7.2:16997766-16997785 | MS.gene072328:CDS | 45.0% | |
| CATCCTGAAGGTCATCAACA+AGG | + | chr7.2:16997388-16997407 | None:intergenic | 45.0% | |
| CATCTCTTCTGGACTTGACA+AGG | - | chr7.2:16999365-16999384 | MS.gene072328:CDS | 45.0% | |
| CATTAAGAGGTCCATCCTGA+AGG | + | chr7.2:16997400-16997419 | None:intergenic | 45.0% | |
| CTGACCATTCTCCAAGACTA+CGG | + | chr7.2:16997654-16997673 | None:intergenic | 45.0% | |
| CTTCAGGATGGACCTCTTAA+TGG | - | chr7.2:16997398-16997417 | MS.gene072328:CDS | 45.0% | |
| CTTTGTCTGTCCACCATCAA+TGG | - | chr7.2:16998803-16998822 | MS.gene072328:intron | 45.0% | |
| GAGCCATTATTGCTGAACTG+TGG | - | chr7.2:16998607-16998626 | MS.gene072328:CDS | 45.0% | |
| GAGGAAAAAATTGGGGACTG+AGG | - | chr7.2:16998009-16998028 | MS.gene072328:CDS | 45.0% | |
| GAGTGTCCATTGCATGACAA+GGG | + | chr7.2:16997775-16997794 | None:intergenic | 45.0% | |
| GTTCCTTTACCAACTCCAGA+AGG | + | chr7.2:16998094-16998113 | None:intergenic | 45.0% | |
| GTTGCAACTGCACCCAAATT+AGG | - | chr7.2:16999176-16999195 | MS.gene072328:intron | 45.0% | |
| TCAAGCTCTTCCATTGATGG+TGG | + | chr7.2:16998816-16998835 | None:intergenic | 45.0% | |
| TCCATTGCATGACAAGGGTT+TGG | + | chr7.2:16997770-16997789 | None:intergenic | 45.0% | |
| TCTCCATATTTCTCGGAGCA+CGG | + | chr7.2:16998180-16998199 | None:intergenic | 45.0% | |
| TGAGTGTCCATTGCATGACA+AGG | + | chr7.2:16997776-16997795 | None:intergenic | 45.0% | |
| TTTGTATGGGACCAGTGTTG+AGG | - | chr7.2:16998294-16998313 | MS.gene072328:intron | 45.0% | |
| ! | CTCGAATTTGCTTCTGTCCA+TGG | - | chr7.2:16998268-16998287 | MS.gene072328:intron | 45.0% |
| ! | GAGGTTGTTGCTTGGAGTAA+GGG | - | chr7.2:16998028-16998047 | MS.gene072328:intron | 45.0% |
| ! | GATCCGGTTTTCGAAAAGCA+CGG | + | chr7.2:16997800-16997819 | None:intergenic | 45.0% |
| ! | TGAGGTTGTTGCTTGGAGTA+AGG | - | chr7.2:16998027-16998046 | MS.gene072328:intron | 45.0% |
| ! | TTAATCTCTCTAGGTGCTGC+TGG | + | chr7.2:16999291-16999310 | None:intergenic | 45.0% |
| ! | TTGACCGTAGTCTTGGAGAA+TGG | - | chr7.2:16997647-16997666 | MS.gene072328:intron | 45.0% |
| !! | ATTAGTGGTCCTTCTGGAGT+TGG | - | chr7.2:16998082-16998101 | MS.gene072328:intron | 45.0% |
| !! | CTTGTTGATGACCTTCAGGA+TGG | - | chr7.2:16997386-16997405 | MS.gene072328:CDS | 45.0% |
| !! | GTTCCTTGTTGATGACCTTC+AGG | - | chr7.2:16997382-16997401 | MS.gene072328:CDS | 45.0% |
| !! | TATTTAAAAATTAAAATATC+AGG | + | chr7.2:16998706-16998725 | None:intergenic | 5.0% |
| AAACAGAGGGACTGAGACTG+AGG | - | chr7.2:16998928-16998947 | MS.gene072328:CDS | 50.0% | |
| AAAGCGACTGCGTAATGCTC+AGG | - | chr7.2:16998961-16998980 | MS.gene072328:CDS | 50.0% | |
| AACCCGTGCTCCGAGAAATA+TGG | - | chr7.2:16998174-16998193 | MS.gene072328:intron | 50.0% | |
| AGGTCATCAACAAGGAACGC+TGG | + | chr7.2:16997380-16997399 | None:intergenic | 50.0% | |
| CACTTCAACAGCCTCAACAC+TGG | + | chr7.2:16998308-16998327 | None:intergenic | 50.0% | |
| CTCCATATTTCTCGGAGCAC+GGG | + | chr7.2:16998179-16998198 | None:intergenic | 50.0% | |
| GTCACTGTTGGAGCTGATGA+TGG | - | chr7.2:16997598-16997617 | MS.gene072328:intron | 50.0% | |
| GTTGAAGTGGTAGCTGATGC+AGG | - | chr7.2:16998319-16998338 | MS.gene072328:intron | 50.0% | |
| ! | CAGCCGTGCTTTTCGAAAAC+CGG | - | chr7.2:16997794-16997813 | MS.gene072328:CDS | 50.0% |
| ! | CAGTGTTGAGGCTGTTGAAG+TGG | - | chr7.2:16998306-16998325 | MS.gene072328:intron | 50.0% |
| ! | GAGCATTACGCAGTCGCTTT+AGG | + | chr7.2:16998961-16998980 | None:intergenic | 50.0% |
| ! | GCTTGGAGTAAGGGTGTGAT+AGG | - | chr7.2:16998037-16998056 | MS.gene072328:intron | 50.0% |
| !! | GGTCCTTCTGGAGTTGGTAA+AGG | - | chr7.2:16998088-16998107 | MS.gene072328:intron | 50.0% |
| !! | GTTTGGTGCCTAGCACAGTT+GGG | + | chr7.2:16997753-16997772 | None:intergenic | 50.0% |
| !!! | GGAGGCCCGGTTTTTGTTTT+AGG | + | chr7.2:16997562-16997581 | None:intergenic | 50.0% |
| AGGGTTCACCCAACTGTGCT+AGG | - | chr7.2:16997742-16997761 | MS.gene072328:CDS | 55.0% | |
| ATCGTGGGTACACTGGTGTG+TGG | - | chr7.2:16998420-16998439 | MS.gene072328:intron | 55.0% | |
| CCACTACTCACCTGTCACGA+AGG | + | chr7.2:16998845-16998864 | None:intergenic | 55.0% | |
| CCTTCGTGACAGGTGAGTAG+TGG | - | chr7.2:16998842-16998861 | MS.gene072328:intron | 55.0% | |
| CTGTCAAACAAACGGAGGCC+CGG | + | chr7.2:16997575-16997594 | None:intergenic | 55.0% | |
| GCTCAGGCTGAGATTGAGCA+AGG | - | chr7.2:16998977-16998996 | MS.gene072328:CDS | 55.0% | |
| TGGGGACTGAGGTTGTTGCT+TGG | - | chr7.2:16998020-16998039 | MS.gene072328:intron | 55.0% | |
| !! | GGTTTGGTGCCTAGCACAGT+TGG | + | chr7.2:16997754-16997773 | None:intergenic | 55.0% |
| !! | TTGAGAAGCGCCTTCGTGAC+AGG | - | chr7.2:16998832-16998851 | MS.gene072328:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 16997368 | 16999400 | 16997368 | ID=MS.gene072328 |
| chr7.2 | mRNA | 16997368 | 16999400 | 16997368 | ID=MS.gene072328.t1;Parent=MS.gene072328 |
| chr7.2 | exon | 16999293 | 16999400 | 16999293 | ID=MS.gene072328.t1.exon1;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16999293 | 16999400 | 16999293 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16999100 | 16999173 | 16999100 | ID=MS.gene072328.t1.exon2;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16999100 | 16999173 | 16999100 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16998898 | 16999024 | 16998898 | ID=MS.gene072328.t1.exon3;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16998898 | 16999024 | 16998898 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16998423 | 16998785 | 16998423 | ID=MS.gene072328.t1.exon4;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16998423 | 16998785 | 16998423 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16997915 | 16998036 | 16997915 | ID=MS.gene072328.t1.exon5;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16997915 | 16998036 | 16997915 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16997699 | 16997834 | 16997699 | ID=MS.gene072328.t1.exon6;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16997699 | 16997834 | 16997699 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16997571 | 16997616 | 16997571 | ID=MS.gene072328.t1.exon7;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16997571 | 16997616 | 16997571 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| chr7.2 | exon | 16997368 | 16997473 | 16997368 | ID=MS.gene072328.t1.exon8;Parent=MS.gene072328.t1 |
| chr7.2 | CDS | 16997368 | 16997473 | 16997368 | ID=cds.MS.gene072328.t1;Parent=MS.gene072328.t1 |
| Gene Sequence |
| Protein sequence |
