Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017918.t1 | XP_024627007.1 | 99.2 | 394 | 3 | 0 | 1 | 394 | 1 | 394 | 7.40E-221 | 776.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017918.t1 | Q9M682 | 66.6 | 395 | 119 | 7 | 1 | 389 | 1 | 388 | 1.1e-137 | 491.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017918.t1 | A2Q3K9 | 99.2 | 394 | 3 | 0 | 1 | 394 | 1 | 394 | 5.3e-221 | 776.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene017918 | MS.gene002926 | PPI |
| MS.gene072329 | MS.gene017918 | PPI |
| MS.gene017918 | MS.gene04879 | PPI |
| MS.gene017918 | MS.gene072329 | PPI |
| MS.gene01884 | MS.gene017918 | PPI |
| MS.gene00617 | MS.gene017918 | PPI |
| MS.gene072328 | MS.gene017918 | PPI |
| MS.gene072058 | MS.gene017918 | PPI |
| MS.gene00843 | MS.gene017918 | PPI |
| MS.gene047966 | MS.gene017918 | PPI |
| MS.gene017918 | MS.gene04860 | PPI |
| MS.gene014139 | MS.gene017918 | PPI |
| MS.gene017918 | MS.gene047200 | PPI |
| MS.gene04859 | MS.gene017918 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017918.t1 | MTR_7g092020 | 99.239 | 394 | 3 | 0 | 1 | 394 | 1 | 394 | 0.0 | 802 |
| MS.gene017918.t1 | MTR_7g092020 | 99.174 | 363 | 2 | 1 | 1 | 363 | 1 | 362 | 0.0 | 738 |
| MS.gene017918.t1 | MTR_7g092020 | 99.096 | 332 | 3 | 0 | 63 | 394 | 15 | 346 | 0.0 | 677 |
| MS.gene017918.t1 | MTR_7g092020 | 98.795 | 332 | 3 | 1 | 63 | 394 | 15 | 345 | 0.0 | 671 |
| MS.gene017918.t1 | MTR_0374s0010 | 82.000 | 100 | 18 | 0 | 226 | 325 | 1 | 100 | 1.55e-53 | 173 |
| MS.gene017918.t1 | MTR_2g021320 | 36.747 | 166 | 100 | 3 | 136 | 300 | 91 | 252 | 3.67e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene017918.t1 | AT3G57550 | 66.497 | 394 | 122 | 6 | 1 | 389 | 1 | 389 | 0.0 | 508 |
| MS.gene017918.t1 | AT3G57550 | 66.582 | 395 | 119 | 7 | 1 | 389 | 1 | 388 | 5.91e-180 | 506 |
| MS.gene017918.t1 | AT3G57550 | 66.582 | 395 | 119 | 7 | 1 | 389 | 1 | 388 | 5.91e-180 | 506 |
| MS.gene017918.t1 | AT2G41880 | 66.580 | 386 | 119 | 5 | 1 | 382 | 1 | 380 | 5.55e-176 | 496 |
| MS.gene017918.t1 | AT2G41880 | 66.580 | 386 | 119 | 5 | 1 | 382 | 1 | 380 | 5.55e-176 | 496 |
| MS.gene017918.t1 | AT2G41880 | 62.169 | 415 | 118 | 7 | 1 | 382 | 1 | 409 | 7.77e-169 | 479 |
| MS.gene017918.t1 | AT2G41880 | 67.989 | 353 | 107 | 4 | 1 | 349 | 1 | 351 | 2.20e-164 | 465 |
| MS.gene017918.t1 | AT2G41880 | 67.989 | 353 | 107 | 4 | 1 | 349 | 1 | 351 | 2.20e-164 | 465 |
| MS.gene017918.t1 | AT2G41880 | 70.588 | 323 | 91 | 3 | 1 | 319 | 1 | 323 | 1.27e-158 | 450 |
| MS.gene017918.t1 | AT2G41880 | 70.476 | 315 | 89 | 3 | 1 | 311 | 1 | 315 | 4.48e-154 | 437 |
| MS.gene017918.t1 | AT2G41880 | 70.476 | 315 | 89 | 3 | 1 | 311 | 1 | 315 | 9.17e-154 | 437 |
| MS.gene017918.t1 | AT2G41880 | 70.476 | 315 | 89 | 3 | 1 | 311 | 1 | 315 | 9.17e-154 | 437 |
| MS.gene017918.t1 | AT3G06200 | 32.418 | 182 | 116 | 4 | 136 | 314 | 91 | 268 | 2.11e-20 | 90.9 |
Find 88 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGCACCCAAATT+AGG | 0.227947 | 7.1:-15292802 | MS.gene017918:intron |
| CTTCAGGATGGACCTCTTAA+TGG | 0.276233 | 7.1:-15294580 | MS.gene017918:CDS |
| ATTGTTATTAGTGGTCCTTC+TGG | 0.288971 | 7.1:-15293902 | MS.gene017918:CDS |
| TTCTCAAGCTCTTCCATTGA+TGG | 0.297823 | 7.1:+15293162 | None:intergenic |
| GAGCATTACGCAGTCGCTTT+AGG | 0.302663 | 7.1:+15293020 | None:intergenic |
| CCATATCTGGTCATCTGATT+TGG | 0.313449 | 7.1:+15294139 | None:intergenic |
| CCATCTTTCTCCATATTTCT+CGG | 0.318499 | 7.1:+15293794 | None:intergenic |
| TCACACTCTTCTCAGTAAAA+TGG | 0.321682 | 7.1:+15293762 | None:intergenic |
| CCAAATCAGATGACCAGATA+TGG | 0.340254 | 7.1:-15294139 | MS.gene017918:CDS |
| AAGGAATTCCCTTCGATGTT+TGG | 0.340728 | 7.1:-15293845 | MS.gene017918:CDS |
| TCAAGTCCTCTTGTCCTTCC+AGG | 0.345102 | 7.1:+15292280 | None:intergenic |
| AACCCGTGCTCCGAGAAATA+TGG | 0.350022 | 7.1:-15293804 | MS.gene017918:CDS |
| CAGAAATTACTGGGACTTGA+TGG | 0.358399 | 7.1:-15292829 | MS.gene017918:CDS |
| GTTCCTTGTTGATGACCTTC+AGG | 0.367183 | 7.1:-15294596 | MS.gene017918:CDS |
| ATCATAAGCTGCATCTCTTC+TGG | 0.369022 | 7.1:-15292624 | MS.gene017918:CDS |
| TTCATTGGTGCAGAAATTAC+TGG | 0.369583 | 7.1:-15292839 | MS.gene017918:intron |
| TCTGTCCATGGTAATTTGTA+TGG | 0.376553 | 7.1:-15293698 | MS.gene017918:CDS |
| CTCGAATTTGCTTCTGTCCA+TGG | 0.403156 | 7.1:-15293710 | MS.gene017918:CDS |
| GAGAAACCTATTGTTATTAG+TGG | 0.405407 | 7.1:-15293911 | MS.gene017918:CDS |
| ATTCTTGATATTGATGTTCA+AGG | 0.419974 | 7.1:-15293240 | MS.gene017918:CDS |
| TTCAAGGAGCAAGATCTGTT+AGG | 0.421033 | 7.1:-15293224 | MS.gene017918:CDS |
| GTCTGTCATAACACTCTTCA+AGG | 0.422735 | 7.1:+15292936 | None:intergenic |
| TGAGGTTGTTGCTTGGAGTA+AGG | 0.423659 | 7.1:-15293951 | MS.gene017918:CDS |
| TGGACAGACAAAGATGAATA+TGG | 0.427437 | 7.1:+15293185 | None:intergenic |
| TGGAACCTTTCTTAAGAACT+AGG | 0.427990 | 7.1:+15294159 | None:intergenic |
| CTTTGTCTGTCCACCATCAA+TGG | 0.430337 | 7.1:-15293175 | MS.gene017918:CDS |
| GAAGGACCACTAATAACAAT+AGG | 0.431055 | 7.1:+15293905 | None:intergenic |
| ATTAGTGGTCCTTCTGGAGT+TGG | 0.435618 | 7.1:-15293896 | MS.gene017918:CDS |
| CTCCATATTTCTCGGAGCAC+GGG | 0.445632 | 7.1:+15293802 | None:intergenic |
| CGGATCCTAGTTCTTAAGAA+AGG | 0.451808 | 7.1:-15294164 | MS.gene017918:CDS |
| TCTCCATATTTCTCGGAGCA+CGG | 0.454075 | 7.1:+15293801 | None:intergenic |
| GGTTTGGTGCCTAGCACAGT+TGG | 0.455219 | 7.1:+15294227 | None:intergenic |
| TGGATGTTTCCTCACTGAAA+GGG | 0.456264 | 7.1:-15292309 | MS.gene017918:CDS |
| TTCAATTCAAGACCATTAAG+AGG | 0.459949 | 7.1:+15294568 | None:intergenic |
| CTTTCTTAAGAACTAGGATC+CGG | 0.474576 | 7.1:+15294165 | None:intergenic |
| TTGAGAAGCGCCTTCGTGAC+AGG | 0.480044 | 7.1:-15293146 | MS.gene017918:intron |
| TCCATTGCATGACAAGGGTT+TGG | 0.480420 | 7.1:+15294211 | None:intergenic |
| TCTTCTCAGTAAAATGGTAA+TGG | 0.482341 | 7.1:+15293768 | None:intergenic |
| TTGACCGTAGTCTTGGAGAA+TGG | 0.486043 | 7.1:-15294331 | MS.gene017918:intron |
| CTGTCCATGGTAATTTGTAT+GGG | 0.487223 | 7.1:-15293697 | MS.gene017918:CDS |
| CTTGTTGATGACCTTCAGGA+TGG | 0.487351 | 7.1:-15294592 | MS.gene017918:CDS |
| TCACCTCTAGAAACCATATC+TGG | 0.487464 | 7.1:+15294126 | None:intergenic |
| CGAGAAATATGGAGAAAGAT+GGG | 0.489516 | 7.1:-15293793 | MS.gene017918:CDS |
| CCGAGAAATATGGAGAAAGA+TGG | 0.490569 | 7.1:-15293794 | MS.gene017918:CDS |
| GTTTGACAGTATGTCACTGT+TGG | 0.492792 | 7.1:-15294392 | MS.gene017918:intron |
| ATGGAGAAAGAGATCAAAAG+TGG | 0.501117 | 7.1:-15293740 | MS.gene017918:CDS |
| GAGGTTGTTGCTTGGAGTAA+GGG | 0.507302 | 7.1:-15293950 | MS.gene017918:CDS |
| AAAGCGACTGCGTAATGCTC+AGG | 0.512562 | 7.1:-15293017 | MS.gene017918:CDS |
| GGTCCTTCTGGAGTTGGTAA+AGG | 0.512799 | 7.1:-15293890 | MS.gene017918:CDS |
| GTTTGGTGCCTAGCACAGTT+GGG | 0.517021 | 7.1:+15294228 | None:intergenic |
| ACTAATATCAATGCTCATGA+AGG | 0.517312 | 7.1:-15293864 | MS.gene017918:CDS |
| GCTTGGAGTAAGGGTGTGAT+AGG | 0.517396 | 7.1:-15293941 | MS.gene017918:CDS |
| TCAAGGAGCAAGATCTGTTA+GGG | 0.522205 | 7.1:-15293223 | MS.gene017918:CDS |
| TTAGACACTGAATGATCTGT+TGG | 0.523783 | 7.1:+15292663 | None:intergenic |
| GTCACTGTTGGAGCTGATGA+TGG | 0.527989 | 7.1:-15294380 | MS.gene017918:CDS |
| TTGGATGTTTCCTCACTGAA+AGG | 0.528344 | 7.1:-15292310 | MS.gene017918:CDS |
| AGAGTGTTATGACAGACTTA+AGG | 0.531515 | 7.1:-15292930 | MS.gene017918:intron |
| GTTGAAGTGGTAGCTGATGC+AGG | 0.538538 | 7.1:-15293659 | MS.gene017918:CDS |
| TGGGGACTGAGGTTGTTGCT+TGG | 0.545642 | 7.1:-15293958 | MS.gene017918:CDS |
| GTTGGTAGATTAATCTCTCT+AGG | 0.546143 | 7.1:+15292681 | None:intergenic |
| TGCAAAACAACTACTGTCGT+TGG | 0.554632 | 7.1:-15294535 | MS.gene017918:CDS |
| TTGACTTGACAGGATCATGT+TGG | 0.561118 | 7.1:-15292329 | MS.gene017918:intron |
| TCAAGCTCTTCCATTGATGG+TGG | 0.563601 | 7.1:+15293165 | None:intergenic |
| GGATGTTTCCTCACTGAAAG+GGG | 0.566805 | 7.1:-15292308 | MS.gene017918:CDS |
| AGGGTTCACCCAACTGTGCT+AGG | 0.568022 | 7.1:-15294236 | MS.gene017918:CDS |
| CATCTCTTCTGGACTTGACA+AGG | 0.573859 | 7.1:-15292613 | MS.gene017918:CDS |
| GGTGCACCTGGAAGGACAAG+AGG | 0.574956 | 7.1:-15292286 | MS.gene017918:CDS |
| AATGGTCTTGAATTGAACAA+TGG | 0.577419 | 7.1:-15294562 | MS.gene017918:CDS |
| TCATTGGTGCAGAAATTACT+GGG | 0.585295 | 7.1:-15292838 | MS.gene017918:intron |
| ACCAAACCCTTGTCATGCAA+TGG | 0.601097 | 7.1:-15294212 | MS.gene017918:CDS |
| AAACAGAGGGACTGAGACTG+AGG | 0.601275 | 7.1:-15293050 | MS.gene017918:intron |
| CAGTGTTGAGGCTGTTGAAG+TGG | 0.604055 | 7.1:-15293672 | MS.gene017918:CDS |
| CATTAAGAGGTCCATCCTGA+AGG | 0.605764 | 7.1:+15294581 | None:intergenic |
| TGAGTGTCCATTGCATGACA+AGG | 0.606716 | 7.1:+15294205 | None:intergenic |
| CTGACCATTCTCCAAGACTA+CGG | 0.617954 | 7.1:+15294327 | None:intergenic |
| GATGTTTCCTCACTGAAAGG+GGG | 0.625893 | 7.1:-15292307 | MS.gene017918:CDS |
| CATCCTGAAGGTCATCAACA+AGG | 0.626232 | 7.1:+15294593 | None:intergenic |
| CACTTCAACAGCCTCAACAC+TGG | 0.628025 | 7.1:+15293673 | None:intergenic |
| GCTCAGGCTGAGATTGAGCA+AGG | 0.631772 | 7.1:-15293001 | MS.gene017918:CDS |
| GTTCCTTTACCAACTCCAGA+AGG | 0.638608 | 7.1:+15293887 | None:intergenic |
| TGACCAGATATGGTTTCTAG+AGG | 0.640137 | 7.1:-15294129 | MS.gene017918:intron |
| GAGTGTCCATTGCATGACAA+GGG | 0.640152 | 7.1:+15294206 | None:intergenic |
| CTGAATATGTTAGACAGCAG+AGG | 0.642982 | 7.1:-15293988 | MS.gene017918:CDS |
| CCACTACTCACCTGTCACGA+AGG | 0.647896 | 7.1:+15293136 | None:intergenic |
| TGGTCCCATACAAATTACCA+TGG | 0.653492 | 7.1:+15293693 | None:intergenic |
| AGGTCATCAACAAGGAACGC+TGG | 0.660018 | 7.1:+15294601 | None:intergenic |
| GAGAAATATGGAGAAAGATG+GGG | 0.669595 | 7.1:-15293792 | MS.gene017918:CDS |
| TTTGTATGGGACCAGTGTTG+AGG | 0.692634 | 7.1:-15293684 | MS.gene017918:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCTTACCTAATT+TGG | + | chr7.1:15294237-15294256 | None:intergenic | 15.0% |
| !! | AAAAAATTCTTACCTAATTT+GGG | + | chr7.1:15294236-15294255 | None:intergenic | 15.0% |
| !! | AAACAAGTAAAGAAAATTAT+AGG | + | chr7.1:15294642-15294661 | None:intergenic | 15.0% |
| !! | TTGTTAATTTATGAATCAAA+TGG | + | chr7.1:15294517-15294536 | None:intergenic | 15.0% |
| !!! | ATTAAGTTAAGACTAAATTT+TGG | + | chr7.1:15293946-15293965 | None:intergenic | 15.0% |
| !!! | TAAATGCTAATTTGTTTTAT+TGG | - | chr7.1:15292999-15293018 | MS.gene017918:CDS | 15.0% |
| !!! | TTAATTTTTAAATATTCCAG+AGG | - | chr7.1:15293757-15293776 | MS.gene017918:CDS | 15.0% |
| !! | ATATTAGAACATTAAATCGT+GGG | - | chr7.1:15293450-15293469 | MS.gene017918:intron | 20.0% |
| !! | ATTAAGGAATTTCAATTTCA+GGG | + | chr7.1:15294554-15294573 | None:intergenic | 20.0% |
| !! | CAAAAGAACTAATATGATTA+AGG | + | chr7.1:15294570-15294589 | None:intergenic | 20.0% |
| !! | GAAATTAACAAAATTCCAAA+AGG | + | chr7.1:15294598-15294617 | None:intergenic | 20.0% |
| !!! | AATCAATTCTAAAAACTTCA+AGG | + | chr7.1:15293579-15293598 | None:intergenic | 20.0% |
| !!! | AATTCATTTTATTTGAAGCT+TGG | - | chr7.1:15293427-15293446 | MS.gene017918:intron | 20.0% |
| !!! | CTTAATCATATTAGTTCTTT+TGG | - | chr7.1:15294568-15294587 | MS.gene017918:CDS | 20.0% |
| !!! | TAATTTGTTTTATTGGTACT+AGG | - | chr7.1:15293006-15293025 | MS.gene017918:CDS | 20.0% |
| !!! | TTTGGAATTTTGTTAATTTC+AGG | - | chr7.1:15294598-15294617 | MS.gene017918:CDS | 20.0% |
| !!! | TTTGTTACTGATATTCATTT+TGG | - | chr7.1:15292759-15292778 | MS.gene017918:intron | 20.0% |
| !!! | TTTTTGTTTTAGGCATAAAT+TGG | + | chr7.1:15292597-15292616 | None:intergenic | 20.0% |
| ! | ATTCTTGATATTGATGTTCA+AGG | - | chr7.1:15293783-15293802 | MS.gene017918:CDS | 25.0% |
| ! | CTATTTGATTGTGATCAATA+GGG | - | chr7.1:15292392-15292411 | MS.gene017918:intron | 25.0% |
| ! | CTGAAAATTTACATTCAGTT+TGG | + | chr7.1:15294266-15294285 | None:intergenic | 25.0% |
| ! | GAATTTGTGATGATTAAATG+TGG | - | chr7.1:15292331-15292350 | MS.gene017918:intron | 25.0% |
| ! | GATATTAGAACATTAAATCG+TGG | - | chr7.1:15293449-15293468 | MS.gene017918:intron | 25.0% |
| ! | GATTAAGGAATTTCAATTTC+AGG | + | chr7.1:15294555-15294574 | None:intergenic | 25.0% |
| ! | TACGATTTAAGAAACGAAAT+TGG | + | chr7.1:15294485-15294504 | None:intergenic | 25.0% |
| ! | TCTATTTGATTGTGATCAAT+AGG | - | chr7.1:15292391-15292410 | MS.gene017918:intron | 25.0% |
| ! | TTTATGCCTAAAACAAAAAC+CGG | - | chr7.1:15292598-15292617 | MS.gene017918:intron | 25.0% |
| !!! | ACTTAATGTTTTGAAAACAG+AGG | - | chr7.1:15293959-15293978 | MS.gene017918:CDS | 25.0% |
| !!! | CTTAATGTTTTGAAAACAGA+GGG | - | chr7.1:15293960-15293979 | MS.gene017918:CDS | 25.0% |
| !!! | TTACTTGTTTTAGCACTATA+GGG | - | chr7.1:15294652-15294671 | MS.gene017918:intron | 25.0% |
| !!! | TTTACTTGTTTTAGCACTAT+AGG | - | chr7.1:15294651-15294670 | MS.gene017918:intron | 25.0% |
| ACTAATATCAATGCTCATGA+AGG | - | chr7.1:15293159-15293178 | MS.gene017918:CDS | 30.0% | |
| ATGATATAGCATGGAATAGA+AGG | + | chr7.1:15292265-15292284 | None:intergenic | 30.0% | |
| CATGTTAGTATTTACCTTCA+TGG | + | chr7.1:15294298-15294317 | None:intergenic | 30.0% | |
| CCAATGAACATACGTATATT+AGG | + | chr7.1:15294172-15294191 | None:intergenic | 30.0% | |
| CCTAATATACGTATGTTCAT+TGG | - | chr7.1:15294169-15294188 | MS.gene017918:CDS | 30.0% | |
| GGTAAGAAATTGTCGTAATT+CGG | + | chr7.1:15293730-15293749 | None:intergenic | 30.0% | |
| GTCAAAAATTTGAACGTCAA+TGG | + | chr7.1:15292677-15292696 | None:intergenic | 30.0% | |
| GTTTCTTAAATCGTAGACAT+TGG | - | chr7.1:15294490-15294509 | MS.gene017918:intron | 30.0% | |
| TCTTCTCAGTAAAATGGTAA+TGG | + | chr7.1:15293258-15293277 | None:intergenic | 30.0% | |
| TGATTAAATGTGGATCAAAG+TGG | - | chr7.1:15292341-15292360 | MS.gene017918:intron | 30.0% | |
| TGTAACTCAATGATATAGCA+TGG | + | chr7.1:15292274-15292293 | None:intergenic | 30.0% | |
| TGTCGAAATCTATGGTAATT+TGG | + | chr7.1:15293499-15293518 | None:intergenic | 30.0% | |
| TTATGCCTAAAACAAAAACC+GGG | - | chr7.1:15292599-15292618 | MS.gene017918:intron | 30.0% | |
| TTCAATTCAAGACCATTAAG+AGG | + | chr7.1:15292458-15292477 | None:intergenic | 30.0% | |
| TTCAGTTTATAAAGCCATGA+AGG | - | chr7.1:15294281-15294300 | MS.gene017918:intron | 30.0% | |
| ! | AATGGTCTTGAATTGAACAA+TGG | - | chr7.1:15292461-15292480 | MS.gene017918:intron | 30.0% |
| ! | GAGAAACCTATTGTTATTAG+TGG | - | chr7.1:15293112-15293131 | MS.gene017918:intron | 30.0% |
| ! | GATATTCATTTTGGATTGCA+GGG | - | chr7.1:15292768-15292787 | MS.gene017918:intron | 30.0% |
| ! | TGATATTCATTTTGGATTGC+AGG | - | chr7.1:15292767-15292786 | MS.gene017918:intron | 30.0% |
| !! | AGGATGATAAGAACTTTTTC+AGG | + | chr7.1:15294152-15294171 | None:intergenic | 30.0% |
| !!! | TAAGAACTTTTTCAGGATTG+AGG | + | chr7.1:15294145-15294164 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATTGGTACTAGG+TGG | - | chr7.1:15293009-15293028 | MS.gene017918:CDS | 30.0% |
| AATCCACAGTTCAGCAATAA+TGG | + | chr7.1:15293658-15293677 | None:intergenic | 35.0% | |
| ACAGAAAAACCAAACATCGA+AGG | + | chr7.1:15293190-15293209 | None:intergenic | 35.0% | |
| AGACAGCAGAGGAAAAAATT+GGG | - | chr7.1:15293046-15293065 | MS.gene017918:CDS | 35.0% | |
| ATGGAGAAAGAGATCAAAAG+TGG | - | chr7.1:15293283-15293302 | MS.gene017918:intron | 35.0% | |
| CAGAAAAACCAAACATCGAA+GGG | + | chr7.1:15293189-15293208 | None:intergenic | 35.0% | |
| CCATCTTTCTCCATATTTCT+CGG | + | chr7.1:15293232-15293251 | None:intergenic | 35.0% | |
| CGAGAAATATGGAGAAAGAT+GGG | - | chr7.1:15293230-15293249 | MS.gene017918:CDS | 35.0% | |
| CTTTCTTAAGAACTAGGATC+CGG | + | chr7.1:15292861-15292880 | None:intergenic | 35.0% | |
| GAAGGACCACTAATAACAAT+AGG | + | chr7.1:15293121-15293140 | None:intergenic | 35.0% | |
| GAGAAATATGGAGAAAGATG+GGG | - | chr7.1:15293231-15293250 | MS.gene017918:CDS | 35.0% | |
| GTGACATACTGTCAAACAAA+CGG | + | chr7.1:15292628-15292647 | None:intergenic | 35.0% | |
| TAGACAGCAGAGGAAAAAAT+TGG | - | chr7.1:15293045-15293064 | MS.gene017918:CDS | 35.0% | |
| TCACACTCTTCTCAGTAAAA+TGG | + | chr7.1:15293264-15293283 | None:intergenic | 35.0% | |
| TCATTGGTGCAGAAATTACT+GGG | - | chr7.1:15294185-15294204 | MS.gene017918:CDS | 35.0% | |
| TGGAACCTTTCTTAAGAACT+AGG | + | chr7.1:15292867-15292886 | None:intergenic | 35.0% | |
| TGGACAGACAAAGATGAATA+TGG | + | chr7.1:15293841-15293860 | None:intergenic | 35.0% | |
| TTAGACACTGAATGATCTGT+TGG | + | chr7.1:15294363-15294382 | None:intergenic | 35.0% | |
| TTCATTCTGAGTTCAGCTAA+AGG | - | chr7.1:15293532-15293551 | MS.gene017918:intron | 35.0% | |
| TTCATTGGTGCAGAAATTAC+TGG | - | chr7.1:15294184-15294203 | MS.gene017918:CDS | 35.0% | |
| ! | AGAGTGTTATGACAGACTTA+AGG | - | chr7.1:15294093-15294112 | MS.gene017918:intron | 35.0% |
| ! | AGTTCTTTTGGATGACCTTT+TGG | - | chr7.1:15294580-15294599 | MS.gene017918:CDS | 35.0% |
| ! | ATTGTTATTAGTGGTCCTTC+TGG | - | chr7.1:15293121-15293140 | MS.gene017918:intron | 35.0% |
| ! | CAAATTTTTGACCGTAGTCT+TGG | - | chr7.1:15292685-15292704 | MS.gene017918:CDS | 35.0% |
| ! | CTGTCCATGGTAATTTGTAT+GGG | - | chr7.1:15293326-15293345 | MS.gene017918:intron | 35.0% |
| ! | GTTGGTAGATTAATCTCTCT+AGG | + | chr7.1:15294345-15294364 | None:intergenic | 35.0% |
| ! | TCTGTCCATGGTAATTTGTA+TGG | - | chr7.1:15293325-15293344 | MS.gene017918:intron | 35.0% |
| !! | GATCTTGTATTTGACTTGAC+AGG | - | chr7.1:15294684-15294703 | MS.gene017918:intron | 35.0% |
| !! | TTTTACTGAGAAGAGTGTGA+TGG | - | chr7.1:15293264-15293283 | MS.gene017918:intron | 35.0% |
| !!! | GGACTTGATTTTCAAGTCAT+AGG | - | chr7.1:15294758-15294777 | MS.gene017918:intron | 35.0% |
| !!! | TGTTTTAGCACTATAGGGTA+AGG | - | chr7.1:15294657-15294676 | MS.gene017918:intron | 35.0% |
| AACCACAACAACGTAATGAG+AGG | + | chr7.1:15293707-15293726 | None:intergenic | 40.0% | |
| AACCTCTCATTACGTTGTTG+TGG | - | chr7.1:15293702-15293721 | MS.gene017918:CDS | 40.0% | |
| AAGGAATTCCCTTCGATGTT+TGG | - | chr7.1:15293178-15293197 | MS.gene017918:CDS | 40.0% | |
| ACATACTGTCAAACAAACGG+AGG | + | chr7.1:15292625-15292644 | None:intergenic | 40.0% | |
| ACATTAAATCGTGGGTACAC+TGG | - | chr7.1:15293458-15293477 | MS.gene017918:intron | 40.0% | |
| ATCATAAGCTGCATCTCTTC+TGG | - | chr7.1:15294399-15294418 | MS.gene017918:intron | 40.0% | |
| CAATATCAAGAATGCACCTC+TGG | + | chr7.1:15293776-15293795 | None:intergenic | 40.0% | |
| CAGAAATTACTGGGACTTGA+TGG | - | chr7.1:15294194-15294213 | MS.gene017918:CDS | 40.0% | |
| CCAAATCAGATGACCAGATA+TGG | - | chr7.1:15292884-15292903 | MS.gene017918:intron | 40.0% | |
| CCATATCTGGTCATCTGATT+TGG | + | chr7.1:15292887-15292906 | None:intergenic | 40.0% | |
| CCGAGAAATATGGAGAAAGA+TGG | - | chr7.1:15293229-15293248 | MS.gene017918:CDS | 40.0% | |
| CCTATGACTTCGAGAATGTA+AGG | - | chr7.1:15293613-15293632 | MS.gene017918:intron | 40.0% | |
| CCTTACATTCTCGAAGTCAT+AGG | + | chr7.1:15293616-15293635 | None:intergenic | 40.0% | |
| CTGAATATGTTAGACAGCAG+AGG | - | chr7.1:15293035-15293054 | MS.gene017918:CDS | 40.0% | |
| GACAGCAGAGGAAAAAATTG+GGG | - | chr7.1:15293047-15293066 | MS.gene017918:CDS | 40.0% | |
| GCAAGACTTGTCGAAATCTA+TGG | + | chr7.1:15293507-15293526 | None:intergenic | 40.0% | |
| GCCTTACAAAAACAGCTATG+AGG | + | chr7.1:15292737-15292756 | None:intergenic | 40.0% | |
| GTCTGTCATAACACTCTTCA+AGG | + | chr7.1:15294090-15294109 | None:intergenic | 40.0% | |
| GTTTGACAGTATGTCACTGT+TGG | - | chr7.1:15292631-15292650 | MS.gene017918:CDS | 40.0% | |
| TACTGTCGTTGGCGAAAAAA+CGG | - | chr7.1:15292499-15292518 | MS.gene017918:intron | 40.0% | |
| TCAAGGAGCAAGATCTGTTA+GGG | - | chr7.1:15293800-15293819 | MS.gene017918:CDS | 40.0% | |
| TGCAAAACAACTACTGTCGT+TGG | - | chr7.1:15292488-15292507 | MS.gene017918:intron | 40.0% | |
| TGGATGTTTCCTCACTGAAA+GGG | - | chr7.1:15294714-15294733 | MS.gene017918:intron | 40.0% | |
| TGGTCCCATACAAATTACCA+TGG | + | chr7.1:15293333-15293352 | None:intergenic | 40.0% | |
| TTCAAGGAGCAAGATCTGTT+AGG | - | chr7.1:15293799-15293818 | MS.gene017918:CDS | 40.0% | |
| TTCTCAAGCTCTTCCATTGA+TGG | + | chr7.1:15293864-15293883 | None:intergenic | 40.0% | |
| TTGGATGTTTCCTCACTGAA+AGG | - | chr7.1:15294713-15294732 | MS.gene017918:intron | 40.0% | |
| ! | CGGATCCTAGTTCTTAAGAA+AGG | - | chr7.1:15292859-15292878 | MS.gene017918:intron | 40.0% |
| ! | GAGGAAGTTTTTGCTTTAGC+AGG | + | chr7.1:15294126-15294145 | None:intergenic | 40.0% |
| ! | GTGGATTATAGCGTTGTTAG+AGG | - | chr7.1:15293671-15293690 | MS.gene017918:CDS | 40.0% |
| ! | TCACCTCTAGAAACCATATC+TGG | + | chr7.1:15292900-15292919 | None:intergenic | 40.0% |
| ! | TGACCAGATATGGTTTCTAG+AGG | - | chr7.1:15292894-15292913 | MS.gene017918:intron | 40.0% |
| ! | TTGACTTGACAGGATCATGT+TGG | - | chr7.1:15294694-15294713 | MS.gene017918:intron | 40.0% |
| !!! | GCCTCATAGCTGTTTTTGTA+AGG | - | chr7.1:15292733-15292752 | MS.gene017918:intron | 40.0% |
| ACCAAACCCTTGTCATGCAA+TGG | - | chr7.1:15292811-15292830 | MS.gene017918:CDS | 45.0% | |
| CATCCTGAAGGTCATCAACA+AGG | + | chr7.1:15292433-15292452 | None:intergenic | 45.0% | |
| CATCTCTTCTGGACTTGACA+AGG | - | chr7.1:15294410-15294429 | MS.gene017918:intron | 45.0% | |
| CATTAAGAGGTCCATCCTGA+AGG | + | chr7.1:15292445-15292464 | None:intergenic | 45.0% | |
| CTGACCATTCTCCAAGACTA+CGG | + | chr7.1:15292699-15292718 | None:intergenic | 45.0% | |
| CTTCAGGATGGACCTCTTAA+TGG | - | chr7.1:15292443-15292462 | MS.gene017918:intron | 45.0% | |
| CTTTGTCTGTCCACCATCAA+TGG | - | chr7.1:15293848-15293867 | MS.gene017918:CDS | 45.0% | |
| GAGCCATTATTGCTGAACTG+TGG | - | chr7.1:15293652-15293671 | MS.gene017918:intron | 45.0% | |
| GAGGAAAAAATTGGGGACTG+AGG | - | chr7.1:15293054-15293073 | MS.gene017918:intron | 45.0% | |
| GAGTGTCCATTGCATGACAA+GGG | + | chr7.1:15292820-15292839 | None:intergenic | 45.0% | |
| GATGTTTCCTCACTGAAAGG+GGG | - | chr7.1:15294716-15294735 | MS.gene017918:intron | 45.0% | |
| GGATGTTTCCTCACTGAAAG+GGG | - | chr7.1:15294715-15294734 | MS.gene017918:intron | 45.0% | |
| GTTCCTTTACCAACTCCAGA+AGG | + | chr7.1:15293139-15293158 | None:intergenic | 45.0% | |
| GTTGCAACTGCACCCAAATT+AGG | - | chr7.1:15294221-15294240 | MS.gene017918:CDS | 45.0% | |
| TCAAGCTCTTCCATTGATGG+TGG | + | chr7.1:15293861-15293880 | None:intergenic | 45.0% | |
| TCCATTGCATGACAAGGGTT+TGG | + | chr7.1:15292815-15292834 | None:intergenic | 45.0% | |
| TCTCCATATTTCTCGGAGCA+CGG | + | chr7.1:15293225-15293244 | None:intergenic | 45.0% | |
| TGAGTGTCCATTGCATGACA+AGG | + | chr7.1:15292821-15292840 | None:intergenic | 45.0% | |
| TTTGTATGGGACCAGTGTTG+AGG | - | chr7.1:15293339-15293358 | MS.gene017918:intron | 45.0% | |
| ! | CTCGAATTTGCTTCTGTCCA+TGG | - | chr7.1:15293313-15293332 | MS.gene017918:intron | 45.0% |
| ! | GAGGTTGTTGCTTGGAGTAA+GGG | - | chr7.1:15293073-15293092 | MS.gene017918:intron | 45.0% |
| ! | GATCCGGTTTTCGAAAAGCA+CGG | + | chr7.1:15292845-15292864 | None:intergenic | 45.0% |
| ! | TGAGGTTGTTGCTTGGAGTA+AGG | - | chr7.1:15293072-15293091 | MS.gene017918:intron | 45.0% |
| ! | TTAATCTCTCTAGGTGCTGC+TGG | + | chr7.1:15294336-15294355 | None:intergenic | 45.0% |
| ! | TTGACCGTAGTCTTGGAGAA+TGG | - | chr7.1:15292692-15292711 | MS.gene017918:intron | 45.0% |
| !! | ATTAGTGGTCCTTCTGGAGT+TGG | - | chr7.1:15293127-15293146 | MS.gene017918:intron | 45.0% |
| !! | CTTGTTGATGACCTTCAGGA+TGG | - | chr7.1:15292431-15292450 | MS.gene017918:intron | 45.0% |
| !! | GTTCCTTGTTGATGACCTTC+AGG | - | chr7.1:15292427-15292446 | MS.gene017918:intron | 45.0% |
| !! | TATTTAAAAATTAAAATATC+AGG | + | chr7.1:15293751-15293770 | None:intergenic | 5.0% |
| AAACAGAGGGACTGAGACTG+AGG | - | chr7.1:15293973-15293992 | MS.gene017918:CDS | 50.0% | |
| AAAGCGACTGCGTAATGCTC+AGG | - | chr7.1:15294006-15294025 | MS.gene017918:intron | 50.0% | |
| AACCCGTGCTCCGAGAAATA+TGG | - | chr7.1:15293219-15293238 | MS.gene017918:CDS | 50.0% | |
| AGGTCATCAACAAGGAACGC+TGG | + | chr7.1:15292425-15292444 | None:intergenic | 50.0% | |
| CACTTCAACAGCCTCAACAC+TGG | + | chr7.1:15293353-15293372 | None:intergenic | 50.0% | |
| CTCCATATTTCTCGGAGCAC+GGG | + | chr7.1:15293224-15293243 | None:intergenic | 50.0% | |
| GTCACTGTTGGAGCTGATGA+TGG | - | chr7.1:15292643-15292662 | MS.gene017918:CDS | 50.0% | |
| GTTGAAGTGGTAGCTGATGC+AGG | - | chr7.1:15293364-15293383 | MS.gene017918:intron | 50.0% | |
| TCAAGTCCTCTTGTCCTTCC+AGG | + | chr7.1:15294746-15294765 | None:intergenic | 50.0% | |
| ! | CAGCCGTGCTTTTCGAAAAC+CGG | - | chr7.1:15292839-15292858 | MS.gene017918:intron | 50.0% |
| ! | CAGTGTTGAGGCTGTTGAAG+TGG | - | chr7.1:15293351-15293370 | MS.gene017918:intron | 50.0% |
| ! | GAGCATTACGCAGTCGCTTT+AGG | + | chr7.1:15294006-15294025 | None:intergenic | 50.0% |
| ! | GCTTGGAGTAAGGGTGTGAT+AGG | - | chr7.1:15293082-15293101 | MS.gene017918:intron | 50.0% |
| !! | GGTCCTTCTGGAGTTGGTAA+AGG | - | chr7.1:15293133-15293152 | MS.gene017918:intron | 50.0% |
| !! | GTTTGGTGCCTAGCACAGTT+GGG | + | chr7.1:15292798-15292817 | None:intergenic | 50.0% |
| !!! | GGAGGCCCGGTTTTTGTTTT+AGG | + | chr7.1:15292607-15292626 | None:intergenic | 50.0% |
| AGGGTTCACCCAACTGTGCT+AGG | - | chr7.1:15292787-15292806 | MS.gene017918:intron | 55.0% | |
| ATCGTGGGTACACTGGTGTG+TGG | - | chr7.1:15293465-15293484 | MS.gene017918:intron | 55.0% | |
| CCACTACTCACCTGTCACGA+AGG | + | chr7.1:15293890-15293909 | None:intergenic | 55.0% | |
| CCTTCGTGACAGGTGAGTAG+TGG | - | chr7.1:15293887-15293906 | MS.gene017918:CDS | 55.0% | |
| CTGTCAAACAAACGGAGGCC+CGG | + | chr7.1:15292620-15292639 | None:intergenic | 55.0% | |
| GCTCAGGCTGAGATTGAGCA+AGG | - | chr7.1:15294022-15294041 | MS.gene017918:intron | 55.0% | |
| TGGGGACTGAGGTTGTTGCT+TGG | - | chr7.1:15293065-15293084 | MS.gene017918:intron | 55.0% | |
| !! | GGTTTGGTGCCTAGCACAGT+TGG | + | chr7.1:15292799-15292818 | None:intergenic | 55.0% |
| !! | TTGAGAAGCGCCTTCGTGAC+AGG | - | chr7.1:15293877-15293896 | MS.gene017918:CDS | 55.0% |
| AGGTGCACCCCCTTTCAGTG+AGG | + | chr7.1:15294726-15294745 | None:intergenic | 60.0% | |
| GGTGCACCTGGAAGGACAAG+AGG | - | chr7.1:15294737-15294756 | MS.gene017918:intron | 60.0% | |
| ! | TCACTGAAAGGGGGTGCACC+TGG | - | chr7.1:15294725-15294744 | MS.gene017918:intron | 60.0% |
| ! | TGAAAGGGGGTGCACCTGGA+AGG | - | chr7.1:15294729-15294748 | MS.gene017918:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 15292243 | 15294802 | 15292243 | ID=MS.gene017918 |
| chr7.1 | mRNA | 15292243 | 15294802 | 15292243 | ID=MS.gene017918.t1;Parent=MS.gene017918 |
| chr7.1 | exon | 15294800 | 15294802 | 15294800 | ID=MS.gene017918.t1.exon1;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15294800 | 15294802 | 15294800 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15294525 | 15294632 | 15294525 | ID=MS.gene017918.t1.exon2;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15294525 | 15294632 | 15294525 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15294332 | 15294405 | 15294332 | ID=MS.gene017918.t1.exon3;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15294332 | 15294405 | 15294332 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15294130 | 15294256 | 15294130 | ID=MS.gene017918.t1.exon4;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15294130 | 15294256 | 15294130 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15293655 | 15294017 | 15293655 | ID=MS.gene017918.t1.exon5;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15293655 | 15294017 | 15293655 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15293147 | 15293268 | 15293147 | ID=MS.gene017918.t1.exon6;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15293147 | 15293268 | 15293147 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15292931 | 15293066 | 15292931 | ID=MS.gene017918.t1.exon7;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15292931 | 15293066 | 15292931 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15292803 | 15292848 | 15292803 | ID=MS.gene017918.t1.exon8;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15292803 | 15292848 | 15292803 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15292600 | 15292708 | 15292600 | ID=MS.gene017918.t1.exon9;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15292600 | 15292708 | 15292600 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| chr7.1 | exon | 15292243 | 15292339 | 15292243 | ID=MS.gene017918.t1.exon10;Parent=MS.gene017918.t1 |
| chr7.1 | CDS | 15292243 | 15292339 | 15292243 | ID=cds.MS.gene017918.t1;Parent=MS.gene017918.t1 |
| Gene Sequence |
| Protein sequence |
