Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04859.t1 | XP_024627007.1 | 90.3 | 361 | 11 | 2 | 1 | 337 | 2 | 362 | 1.90E-177 | 631.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04859.t1 | Q9M682 | 61.8 | 359 | 105 | 7 | 1 | 330 | 2 | 357 | 6.6e-110 | 398.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04859.t1 | A2Q3K9 | 90.3 | 361 | 11 | 2 | 1 | 337 | 2 | 362 | 1.4e-177 | 631.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene04859 | MS.gene002926 | PPI |
| MS.gene04859 | MS.gene072058 | PPI |
| MS.gene04859 | MS.gene04879 | PPI |
| MS.gene04859 | MS.gene047200 | PPI |
| MS.gene04859 | MS.gene072328 | PPI |
| MS.gene04859 | MS.gene072329 | PPI |
| MS.gene04859 | MS.gene04860 | PPI |
| MS.gene04859 | MS.gene014139 | PPI |
| MS.gene04859 | MS.gene047966 | PPI |
| MS.gene04859 | MS.gene00617 | PPI |
| MS.gene01884 | MS.gene04859 | PPI |
| MS.gene04859 | MS.gene00843 | PPI |
| MS.gene04859 | MS.gene017918 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04859.t1 | MTR_7g092020 | 90.305 | 361 | 11 | 2 | 1 | 337 | 2 | 362 | 0.0 | 650 |
| MS.gene04859.t1 | MTR_7g092020 | 90.028 | 361 | 11 | 3 | 1 | 337 | 2 | 361 | 0.0 | 644 |
| MS.gene04859.t1 | MTR_7g092020 | 88.333 | 300 | 11 | 2 | 62 | 337 | 15 | 314 | 0.0 | 526 |
| MS.gene04859.t1 | MTR_7g092020 | 88.000 | 300 | 11 | 3 | 62 | 337 | 15 | 313 | 0.0 | 521 |
| MS.gene04859.t1 | MTR_0374s0010 | 67.000 | 100 | 14 | 1 | 220 | 300 | 1 | 100 | 1.02e-36 | 128 |
| MS.gene04859.t1 | MTR_2g021320 | 32.530 | 166 | 88 | 4 | 130 | 275 | 91 | 252 | 3.67e-17 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04859.t1 | AT3G57550 | 61.732 | 358 | 108 | 6 | 1 | 330 | 2 | 358 | 9.82e-143 | 409 |
| MS.gene04859.t1 | AT3G57550 | 61.838 | 359 | 105 | 7 | 1 | 330 | 2 | 357 | 5.16e-142 | 407 |
| MS.gene04859.t1 | AT3G57550 | 61.838 | 359 | 105 | 7 | 1 | 330 | 2 | 357 | 5.16e-142 | 407 |
| MS.gene04859.t1 | AT2G41880 | 61.932 | 352 | 104 | 7 | 1 | 324 | 2 | 351 | 8.53e-137 | 393 |
| MS.gene04859.t1 | AT2G41880 | 61.932 | 352 | 104 | 7 | 1 | 324 | 2 | 351 | 8.53e-137 | 393 |
| MS.gene04859.t1 | AT2G41880 | 61.932 | 352 | 104 | 7 | 1 | 324 | 2 | 351 | 3.20e-136 | 392 |
| MS.gene04859.t1 | AT2G41880 | 61.932 | 352 | 104 | 7 | 1 | 324 | 2 | 351 | 3.20e-136 | 392 |
| MS.gene04859.t1 | AT2G41880 | 63.975 | 322 | 88 | 6 | 1 | 294 | 2 | 323 | 8.65e-131 | 377 |
| MS.gene04859.t1 | AT2G41880 | 57.218 | 381 | 104 | 8 | 1 | 324 | 2 | 380 | 2.59e-129 | 376 |
| MS.gene04859.t1 | AT2G41880 | 63.694 | 314 | 86 | 6 | 1 | 286 | 2 | 315 | 1.42e-126 | 365 |
| MS.gene04859.t1 | AT2G41880 | 63.694 | 314 | 86 | 6 | 1 | 286 | 2 | 315 | 2.33e-126 | 365 |
| MS.gene04859.t1 | AT2G41880 | 63.694 | 314 | 86 | 6 | 1 | 286 | 2 | 315 | 2.33e-126 | 365 |
| MS.gene04859.t1 | AT3G06200 | 28.571 | 182 | 104 | 5 | 130 | 289 | 91 | 268 | 5.85e-14 | 71.6 |
Find 75 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGCACCCAAATT+AGG | 0.227947 | 7.2:+17013727 | MS.gene04859:CDS |
| CTTCAGGATGGACCTCTTAA+TGG | 0.276233 | 7.2:+17011947 | MS.gene04859:CDS |
| ATTGTTATTAGTGGTCCTTC+TGG | 0.288971 | 7.2:+17012626 | MS.gene04859:CDS |
| GAGCATTACGCAGTCGCTTT+AGG | 0.302663 | 7.2:-17013509 | None:intergenic |
| CCATATCTGGTCATCTGATT+TGG | 0.313449 | 7.2:-17012388 | None:intergenic |
| CCATCTTTCTCCATATTTCT+CGG | 0.318499 | 7.2:-17012734 | None:intergenic |
| TCACACTCTTCTCAGTAAAA+TGG | 0.321682 | 7.2:-17012766 | None:intergenic |
| CCAAATCAGATGACCAGATA+TGG | 0.340254 | 7.2:+17012388 | MS.gene04859:CDS |
| AAGGAATTCCCTTCGATGTT+TGG | 0.340728 | 7.2:+17012683 | MS.gene04859:CDS |
| AACCCGTGCTCCGAGAAATA+TGG | 0.350022 | 7.2:+17012724 | MS.gene04859:CDS |
| CAGAAATTACTGGGACTTGA+TGG | 0.358399 | 7.2:+17013700 | MS.gene04859:intron |
| GTTCCTTGTTGATGACCTTC+AGG | 0.367183 | 7.2:+17011931 | MS.gene04859:CDS |
| ATCATAAGCTGCATCTCTTC+TGG | 0.369022 | 7.2:+17013904 | MS.gene04859:CDS |
| TTCATTGGTGCAGAAATTAC+TGG | 0.369583 | 7.2:+17013690 | MS.gene04859:intron |
| TCTGTCCATGGTAATTTGTA+TGG | 0.376553 | 7.2:+17012830 | MS.gene04859:CDS |
| CTCGAATTTGCTTCTGTCCA+TGG | 0.403156 | 7.2:+17012818 | MS.gene04859:CDS |
| GAGAAACCTATTGTTATTAG+TGG | 0.405407 | 7.2:+17012617 | MS.gene04859:CDS |
| GAGGTTTGTTGCTTGGAGTA+AGG | 0.405937 | 7.2:+17012577 | MS.gene04859:CDS |
| ATTCTTGATATTGATGTTCA+AGG | 0.419974 | 7.2:+17013288 | MS.gene04859:CDS |
| GGACCAGACAAAGATGAATA+TGG | 0.420454 | 7.2:-17013343 | None:intergenic |
| TTCAAGGAGCAAGATCTGTT+AGG | 0.421033 | 7.2:+17013304 | MS.gene04859:CDS |
| GTCTGTCATAACACTCTTCA+AGG | 0.422735 | 7.2:-17013593 | None:intergenic |
| TGGAACCTTTCTTAAGAACT+AGG | 0.427990 | 7.2:-17012368 | None:intergenic |
| GAAGGACCACTAATAACAAT+AGG | 0.431055 | 7.2:-17012623 | None:intergenic |
| ATTAGTGGTCCTTCTGGAGT+TGG | 0.435618 | 7.2:+17012632 | MS.gene04859:CDS |
| CTCCATATTTCTCGGAGCAC+GGG | 0.445632 | 7.2:-17012726 | None:intergenic |
| CGGATCCTAGTTCTTAAGAA+AGG | 0.451808 | 7.2:+17012363 | MS.gene04859:CDS |
| TCTCCATATTTCTCGGAGCA+CGG | 0.454075 | 7.2:-17012727 | None:intergenic |
| GGTTTGGTGCCTAGCACAGT+TGG | 0.455219 | 7.2:-17012300 | None:intergenic |
| GGGGACTGAGGTTTGTTGCT+TGG | 0.459943 | 7.2:+17012570 | MS.gene04859:CDS |
| TTCAATTCAAGACCATTAAG+AGG | 0.459949 | 7.2:-17011959 | None:intergenic |
| CTTTCTTAAGAACTAGGATC+CGG | 0.474576 | 7.2:-17012362 | None:intergenic |
| TCCATTGCATGACAAGGGTT+TGG | 0.480420 | 7.2:-17012316 | None:intergenic |
| TCTTCTCAGTAAAATGGTAA+TGG | 0.482341 | 7.2:-17012760 | None:intergenic |
| TTGACCGTAGTCTTGGAGAA+TGG | 0.486043 | 7.2:+17012196 | MS.gene04859:CDS |
| CTGTCCATGGTAATTTGTAT+GGG | 0.487223 | 7.2:+17012831 | MS.gene04859:CDS |
| CTTGTTGATGACCTTCAGGA+TGG | 0.487351 | 7.2:+17011935 | MS.gene04859:CDS |
| TCACCTCTAGAAACCATATC+TGG | 0.487464 | 7.2:-17012401 | None:intergenic |
| CGAGAAATATGGAGAAAGAT+GGG | 0.489516 | 7.2:+17012735 | MS.gene04859:CDS |
| CCGAGAAATATGGAGAAAGA+TGG | 0.490569 | 7.2:+17012734 | MS.gene04859:CDS |
| GTTTGACAGTATGTCACTGT+TGG | 0.492792 | 7.2:+17012135 | MS.gene04859:intron |
| AGGTTTGTTGCTTGGAGTAA+GGG | 0.500803 | 7.2:+17012578 | MS.gene04859:CDS |
| ATGGAGAAAGAGATCAAAAG+TGG | 0.501117 | 7.2:+17012788 | MS.gene04859:CDS |
| AAAGCGACTGCGTAATGCTC+AGG | 0.512562 | 7.2:+17013512 | MS.gene04859:CDS |
| GGTCCTTCTGGAGTTGGTAA+AGG | 0.512799 | 7.2:+17012638 | MS.gene04859:CDS |
| GTTTGGTGCCTAGCACAGTT+GGG | 0.517021 | 7.2:-17012299 | None:intergenic |
| ACTAATATCAATGCTCATGA+AGG | 0.517312 | 7.2:+17012664 | MS.gene04859:CDS |
| GCTTGGAGTAAGGGTGTGAT+AGG | 0.517396 | 7.2:+17012587 | MS.gene04859:CDS |
| TCAAGGAGCAAGATCTGTTA+GGG | 0.522205 | 7.2:+17013305 | MS.gene04859:CDS |
| TTAGACACTGAATGATCTGT+TGG | 0.523783 | 7.2:-17013865 | None:intergenic |
| GTCACTGTTGGAGCTGATGA+TGG | 0.527989 | 7.2:+17012147 | MS.gene04859:CDS |
| AGAGTGTTATGACAGACTTA+AGG | 0.531515 | 7.2:+17013599 | MS.gene04859:CDS |
| GTTGAAGTGGTAGCTGATGC+AGG | 0.538538 | 7.2:+17012869 | MS.gene04859:CDS |
| GTTGGTAGATTAATCTCTCT+AGG | 0.546143 | 7.2:-17013847 | None:intergenic |
| TGCAAAACAACTACTGTCGT+TGG | 0.554632 | 7.2:+17011992 | MS.gene04859:CDS |
| AGGGTTCACCCAACTGTGCT+AGG | 0.568022 | 7.2:+17012291 | MS.gene04859:intron |
| CATCTCTTCTGGACTTGACA+AGG | 0.573859 | 7.2:+17013915 | MS.gene04859:CDS |
| AATGGTCTTGAATTGAACAA+TGG | 0.577419 | 7.2:+17011965 | MS.gene04859:CDS |
| TCATTGGTGCAGAAATTACT+GGG | 0.585295 | 7.2:+17013691 | MS.gene04859:intron |
| ACCAAACCCTTGTCATGCAA+TGG | 0.601097 | 7.2:+17012315 | MS.gene04859:CDS |
| CAGTGTTGAGGCTGTTGAAG+TGG | 0.604055 | 7.2:+17012856 | MS.gene04859:CDS |
| CATTAAGAGGTCCATCCTGA+AGG | 0.605764 | 7.2:-17011946 | None:intergenic |
| TGAGTGTCCATTGCATGACA+AGG | 0.606716 | 7.2:-17012322 | None:intergenic |
| CTGACCATTCTCCAAGACTA+CGG | 0.617954 | 7.2:-17012200 | None:intergenic |
| CATCCTGAAGGTCATCAACA+AGG | 0.626232 | 7.2:-17011934 | None:intergenic |
| CACTTCAACAGCCTCAACAC+TGG | 0.628025 | 7.2:-17012855 | None:intergenic |
| GCTCAGGCTGAGATTGAGCA+AGG | 0.631772 | 7.2:+17013528 | MS.gene04859:CDS |
| GTTCCTTTACCAACTCCAGA+AGG | 0.638608 | 7.2:-17012641 | None:intergenic |
| TGACCAGATATGGTTTCTAG+AGG | 0.640137 | 7.2:+17012398 | MS.gene04859:CDS |
| GAGTGTCCATTGCATGACAA+GGG | 0.640152 | 7.2:-17012321 | None:intergenic |
| CTGAATATGTTAGACAGCAG+AGG | 0.642982 | 7.2:+17012539 | MS.gene04859:intron |
| TGGTCCCATACAAATTACCA+TGG | 0.653492 | 7.2:-17012835 | None:intergenic |
| AGGTCATCAACAAGGAACGC+TGG | 0.660018 | 7.2:-17011926 | None:intergenic |
| GAGAAATATGGAGAAAGATG+GGG | 0.669595 | 7.2:+17012736 | MS.gene04859:CDS |
| TTTGTATGGGACCAGTGTTG+AGG | 0.692634 | 7.2:+17012844 | MS.gene04859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCTTACCTAATT+TGG | - | chr7.2:17013743-17013762 | None:intergenic | 15.0% |
| !! | AAAAAATTCTTACCTAATTT+GGG | - | chr7.2:17013742-17013761 | None:intergenic | 15.0% |
| !!! | ATTAAGTTAAGACTAAATTT+TGG | - | chr7.2:17013452-17013471 | None:intergenic | 15.0% |
| !!! | TAAATGCTAATTTGTTTTAT+TGG | + | chr7.2:17012503-17012522 | MS.gene04859:intron | 15.0% |
| !!! | TTAATTTTTAAATATTCCAG+AGG | + | chr7.2:17013262-17013281 | MS.gene04859:intron | 15.0% |
| !! | ATATTAGAACATTAAATCGT+GGG | + | chr7.2:17012955-17012974 | MS.gene04859:intron | 20.0% |
| !!! | AATCAATTCTAAAAACTTCA+AGG | - | chr7.2:17013084-17013103 | None:intergenic | 20.0% |
| !!! | AATTCATTTTATTTGAAGCT+TGG | + | chr7.2:17012932-17012951 | MS.gene04859:intron | 20.0% |
| !!! | TAATTTGTTTTATTGGTACT+AGG | + | chr7.2:17012510-17012529 | MS.gene04859:intron | 20.0% |
| !!! | TTTGTTACTGATATTCATTT+TGG | + | chr7.2:17012263-17012282 | MS.gene04859:intron | 20.0% |
| !!! | TTTTTGTTTTAGGCATAAAT+TGG | - | chr7.2:17012101-17012120 | None:intergenic | 20.0% |
| ! | ATTCTTGATATTGATGTTCA+AGG | + | chr7.2:17013288-17013307 | MS.gene04859:CDS | 25.0% |
| ! | CTGAAAATTTACATTCAGTT+TGG | - | chr7.2:17013772-17013791 | None:intergenic | 25.0% |
| ! | GATATTAGAACATTAAATCG+TGG | + | chr7.2:17012954-17012973 | MS.gene04859:intron | 25.0% |
| ! | TTTATGCCTAAAACAAAAAC+CGG | + | chr7.2:17012102-17012121 | MS.gene04859:intron | 25.0% |
| !!! | ACTTAATGTTTTGAAAACAG+AGG | + | chr7.2:17013465-17013484 | MS.gene04859:intron | 25.0% |
| !!! | CTTAATGTTTTGAAAACAGA+GGG | + | chr7.2:17013466-17013485 | MS.gene04859:intron | 25.0% |
| ACTAATATCAATGCTCATGA+AGG | + | chr7.2:17012664-17012683 | MS.gene04859:CDS | 30.0% | |
| CATGTTAGTATTTACCTTCA+TGG | - | chr7.2:17013804-17013823 | None:intergenic | 30.0% | |
| CCAATGAACATACGTATATT+AGG | - | chr7.2:17013678-17013697 | None:intergenic | 30.0% | |
| CCTAATATACGTATGTTCAT+TGG | + | chr7.2:17013675-17013694 | MS.gene04859:intron | 30.0% | |
| GGTAAGAAATTGTCGTAATT+CGG | - | chr7.2:17013235-17013254 | None:intergenic | 30.0% | |
| GTCAAAAATTTGAACGTCAA+TGG | - | chr7.2:17012181-17012200 | None:intergenic | 30.0% | |
| TCTTCTCAGTAAAATGGTAA+TGG | - | chr7.2:17012763-17012782 | None:intergenic | 30.0% | |
| TGTCGAAATCTATGGTAATT+TGG | - | chr7.2:17013004-17013023 | None:intergenic | 30.0% | |
| TTATGCCTAAAACAAAAACC+GGG | + | chr7.2:17012103-17012122 | MS.gene04859:intron | 30.0% | |
| TTCAATTCAAGACCATTAAG+AGG | - | chr7.2:17011962-17011981 | None:intergenic | 30.0% | |
| TTCAGTTTATAAAGCCATGA+AGG | + | chr7.2:17013787-17013806 | MS.gene04859:intron | 30.0% | |
| ! | AATGGTCTTGAATTGAACAA+TGG | + | chr7.2:17011965-17011984 | MS.gene04859:CDS | 30.0% |
| ! | GAGAAACCTATTGTTATTAG+TGG | + | chr7.2:17012617-17012636 | MS.gene04859:CDS | 30.0% |
| ! | GATATTCATTTTGGATTGCA+GGG | + | chr7.2:17012272-17012291 | MS.gene04859:intron | 30.0% |
| ! | TGATATTCATTTTGGATTGC+AGG | + | chr7.2:17012271-17012290 | MS.gene04859:intron | 30.0% |
| !! | AGGATGATAAGAACTTTTTC+AGG | - | chr7.2:17013658-17013677 | None:intergenic | 30.0% |
| !!! | TAAGAACTTTTTCAGGATTG+AGG | - | chr7.2:17013651-17013670 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATTGGTACTAGG+TGG | + | chr7.2:17012513-17012532 | MS.gene04859:intron | 30.0% |
| AAGCCATATTCATCTTTGTC+TGG | + | chr7.2:17013340-17013359 | MS.gene04859:intron | 35.0% | |
| AATCCACAGTTCAGCAATAA+TGG | - | chr7.2:17013163-17013182 | None:intergenic | 35.0% | |
| ACAGAAAAACCAAACATCGA+AGG | - | chr7.2:17012695-17012714 | None:intergenic | 35.0% | |
| AGACAGCAGAGGAAAAAATT+GGG | + | chr7.2:17012550-17012569 | MS.gene04859:intron | 35.0% | |
| ATGGAGAAAGAGATCAAAAG+TGG | + | chr7.2:17012788-17012807 | MS.gene04859:CDS | 35.0% | |
| CAGAAAAACCAAACATCGAA+GGG | - | chr7.2:17012694-17012713 | None:intergenic | 35.0% | |
| CCATCTTTCTCCATATTTCT+CGG | - | chr7.2:17012737-17012756 | None:intergenic | 35.0% | |
| CGAGAAATATGGAGAAAGAT+GGG | + | chr7.2:17012735-17012754 | MS.gene04859:CDS | 35.0% | |
| CTTTCTTAAGAACTAGGATC+CGG | - | chr7.2:17012365-17012384 | None:intergenic | 35.0% | |
| GAAGGACCACTAATAACAAT+AGG | - | chr7.2:17012626-17012645 | None:intergenic | 35.0% | |
| GAGAAATATGGAGAAAGATG+GGG | + | chr7.2:17012736-17012755 | MS.gene04859:CDS | 35.0% | |
| GTGACATACTGTCAAACAAA+CGG | - | chr7.2:17012132-17012151 | None:intergenic | 35.0% | |
| TAGACAGCAGAGGAAAAAAT+TGG | + | chr7.2:17012549-17012568 | MS.gene04859:intron | 35.0% | |
| TCACACTCTTCTCAGTAAAA+TGG | - | chr7.2:17012769-17012788 | None:intergenic | 35.0% | |
| TCATTGGTGCAGAAATTACT+GGG | + | chr7.2:17013691-17013710 | MS.gene04859:intron | 35.0% | |
| TGACAAGGAGTCAAAGAATT+CGG | + | chr7.2:17013930-17013949 | MS.gene04859:CDS | 35.0% | |
| TGGAACCTTTCTTAAGAACT+AGG | - | chr7.2:17012371-17012390 | None:intergenic | 35.0% | |
| TTAGACACTGAATGATCTGT+TGG | - | chr7.2:17013868-17013887 | None:intergenic | 35.0% | |
| TTCATTCTGAGTTCAGCTAA+AGG | + | chr7.2:17013037-17013056 | MS.gene04859:intron | 35.0% | |
| TTCATTGGTGCAGAAATTAC+TGG | + | chr7.2:17013690-17013709 | MS.gene04859:intron | 35.0% | |
| ! | AGAGTGTTATGACAGACTTA+AGG | + | chr7.2:17013599-17013618 | MS.gene04859:CDS | 35.0% |
| ! | ATTGTTATTAGTGGTCCTTC+TGG | + | chr7.2:17012626-17012645 | MS.gene04859:CDS | 35.0% |
| ! | CAAATTTTTGACCGTAGTCT+TGG | + | chr7.2:17012189-17012208 | MS.gene04859:CDS | 35.0% |
| ! | CTGTCCATGGTAATTTGTAT+GGG | + | chr7.2:17012831-17012850 | MS.gene04859:CDS | 35.0% |
| ! | GTTGGTAGATTAATCTCTCT+AGG | - | chr7.2:17013850-17013869 | None:intergenic | 35.0% |
| ! | TCTGTCCATGGTAATTTGTA+TGG | + | chr7.2:17012830-17012849 | MS.gene04859:CDS | 35.0% |
| !! | TTTTACTGAGAAGAGTGTGA+TGG | + | chr7.2:17012769-17012788 | MS.gene04859:CDS | 35.0% |
| AACCACAACAACGTAATGAG+AGG | - | chr7.2:17013212-17013231 | None:intergenic | 40.0% | |
| AACCTCTCATTACGTTGTTG+TGG | + | chr7.2:17013207-17013226 | MS.gene04859:intron | 40.0% | |
| AAGGAATTCCCTTCGATGTT+TGG | + | chr7.2:17012683-17012702 | MS.gene04859:CDS | 40.0% | |
| ACATACTGTCAAACAAACGG+AGG | - | chr7.2:17012129-17012148 | None:intergenic | 40.0% | |
| ACATTAAATCGTGGGTACAC+TGG | + | chr7.2:17012963-17012982 | MS.gene04859:intron | 40.0% | |
| ATCATAAGCTGCATCTCTTC+TGG | + | chr7.2:17013904-17013923 | MS.gene04859:CDS | 40.0% | |
| CAATATCAAGAATGCACCTC+TGG | - | chr7.2:17013281-17013300 | None:intergenic | 40.0% | |
| CAGAAATTACTGGGACTTGA+TGG | + | chr7.2:17013700-17013719 | MS.gene04859:intron | 40.0% | |
| CCAAATCAGATGACCAGATA+TGG | + | chr7.2:17012388-17012407 | MS.gene04859:CDS | 40.0% | |
| CCATATCTGGTCATCTGATT+TGG | - | chr7.2:17012391-17012410 | None:intergenic | 40.0% | |
| CCGAGAAATATGGAGAAAGA+TGG | + | chr7.2:17012734-17012753 | MS.gene04859:CDS | 40.0% | |
| CCTATGACTTCGAGAATGTA+AGG | + | chr7.2:17013118-17013137 | MS.gene04859:intron | 40.0% | |
| CCTTACATTCTCGAAGTCAT+AGG | - | chr7.2:17013121-17013140 | None:intergenic | 40.0% | |
| CTGAATATGTTAGACAGCAG+AGG | + | chr7.2:17012539-17012558 | MS.gene04859:intron | 40.0% | |
| GACAGCAGAGGAAAAAATTG+GGG | + | chr7.2:17012551-17012570 | MS.gene04859:intron | 40.0% | |
| GCAAGACTTGTCGAAATCTA+TGG | - | chr7.2:17013012-17013031 | None:intergenic | 40.0% | |
| GCCTTACAAAAACAGCTATG+AGG | - | chr7.2:17012241-17012260 | None:intergenic | 40.0% | |
| GGACCAGACAAAGATGAATA+TGG | - | chr7.2:17013346-17013365 | None:intergenic | 40.0% | |
| GTCTGTCATAACACTCTTCA+AGG | - | chr7.2:17013596-17013615 | None:intergenic | 40.0% | |
| GTTTGACAGTATGTCACTGT+TGG | + | chr7.2:17012135-17012154 | MS.gene04859:intron | 40.0% | |
| TACTGTCGTTGGCGAAAAAA+CGG | + | chr7.2:17012003-17012022 | MS.gene04859:CDS | 40.0% | |
| TCAAGGAGCAAGATCTGTTA+GGG | + | chr7.2:17013305-17013324 | MS.gene04859:CDS | 40.0% | |
| TGCAAAACAACTACTGTCGT+TGG | + | chr7.2:17011992-17012011 | MS.gene04859:CDS | 40.0% | |
| TGGTCCCATACAAATTACCA+TGG | - | chr7.2:17012838-17012857 | None:intergenic | 40.0% | |
| TTCAAGGAGCAAGATCTGTT+AGG | + | chr7.2:17013304-17013323 | MS.gene04859:CDS | 40.0% | |
| TTCTCAAGCTCTTCCATTGA+TGG | - | chr7.2:17013370-17013389 | None:intergenic | 40.0% | |
| ! | CGGATCCTAGTTCTTAAGAA+AGG | + | chr7.2:17012363-17012382 | MS.gene04859:CDS | 40.0% |
| ! | GAGGAAGTTTTTGCTTTAGC+AGG | - | chr7.2:17013632-17013651 | None:intergenic | 40.0% |
| ! | GTGGATTATAGCGTTGTTAG+AGG | + | chr7.2:17013176-17013195 | MS.gene04859:intron | 40.0% |
| ! | TCACCTCTAGAAACCATATC+TGG | - | chr7.2:17012404-17012423 | None:intergenic | 40.0% |
| ! | TGACCAGATATGGTTTCTAG+AGG | + | chr7.2:17012398-17012417 | MS.gene04859:CDS | 40.0% |
| !! | AGGTTTGTTGCTTGGAGTAA+GGG | + | chr7.2:17012578-17012597 | MS.gene04859:CDS | 40.0% |
| !!! | GCCTCATAGCTGTTTTTGTA+AGG | + | chr7.2:17012237-17012256 | MS.gene04859:intron | 40.0% |
| ACCAAACCCTTGTCATGCAA+TGG | + | chr7.2:17012315-17012334 | MS.gene04859:CDS | 45.0% | |
| CATCCTGAAGGTCATCAACA+AGG | - | chr7.2:17011937-17011956 | None:intergenic | 45.0% | |
| CATCTCTTCTGGACTTGACA+AGG | + | chr7.2:17013915-17013934 | MS.gene04859:CDS | 45.0% | |
| CATTAAGAGGTCCATCCTGA+AGG | - | chr7.2:17011949-17011968 | None:intergenic | 45.0% | |
| CTGACCATTCTCCAAGACTA+CGG | - | chr7.2:17012203-17012222 | None:intergenic | 45.0% | |
| CTTCAGGATGGACCTCTTAA+TGG | + | chr7.2:17011947-17011966 | MS.gene04859:CDS | 45.0% | |
| GAGCCATTATTGCTGAACTG+TGG | + | chr7.2:17013157-17013176 | MS.gene04859:intron | 45.0% | |
| GAGGAAAAAATTGGGGACTG+AGG | + | chr7.2:17012558-17012577 | MS.gene04859:CDS | 45.0% | |
| GAGTGTCCATTGCATGACAA+GGG | - | chr7.2:17012324-17012343 | None:intergenic | 45.0% | |
| GTTCCTTTACCAACTCCAGA+AGG | - | chr7.2:17012644-17012663 | None:intergenic | 45.0% | |
| GTTGCAACTGCACCCAAATT+AGG | + | chr7.2:17013727-17013746 | MS.gene04859:CDS | 45.0% | |
| TCAAGCTCTTCCATTGATGG+TGG | - | chr7.2:17013367-17013386 | None:intergenic | 45.0% | |
| TCCATTGCATGACAAGGGTT+TGG | - | chr7.2:17012319-17012338 | None:intergenic | 45.0% | |
| TCTCCATATTTCTCGGAGCA+CGG | - | chr7.2:17012730-17012749 | None:intergenic | 45.0% | |
| TGAGTGTCCATTGCATGACA+AGG | - | chr7.2:17012325-17012344 | None:intergenic | 45.0% | |
| TTTGTATGGGACCAGTGTTG+AGG | + | chr7.2:17012844-17012863 | MS.gene04859:CDS | 45.0% | |
| TTTGTCTGGTCCACCATCAA+TGG | + | chr7.2:17013354-17013373 | MS.gene04859:intron | 45.0% | |
| ! | CTCGAATTTGCTTCTGTCCA+TGG | + | chr7.2:17012818-17012837 | MS.gene04859:CDS | 45.0% |
| ! | GATCCGGTTTTCGAAAAGCA+CGG | - | chr7.2:17012349-17012368 | None:intergenic | 45.0% |
| ! | TTGACCGTAGTCTTGGAGAA+TGG | + | chr7.2:17012196-17012215 | MS.gene04859:CDS | 45.0% |
| !! | ATTAGTGGTCCTTCTGGAGT+TGG | + | chr7.2:17012632-17012651 | MS.gene04859:CDS | 45.0% |
| !! | CTTGTTGATGACCTTCAGGA+TGG | + | chr7.2:17011935-17011954 | MS.gene04859:CDS | 45.0% |
| !! | GAGGTTTGTTGCTTGGAGTA+AGG | + | chr7.2:17012577-17012596 | MS.gene04859:CDS | 45.0% |
| !! | GTTCCTTGTTGATGACCTTC+AGG | + | chr7.2:17011931-17011950 | MS.gene04859:CDS | 45.0% |
| !! | TATTTAAAAATTAAAATATC+AGG | - | chr7.2:17013256-17013275 | None:intergenic | 5.0% |
| AAACAGAGGGACTGAGACTG+AGG | + | chr7.2:17013479-17013498 | MS.gene04859:intron | 50.0% | |
| AAAGCGACTGCGTAATGCTC+AGG | + | chr7.2:17013512-17013531 | MS.gene04859:CDS | 50.0% | |
| AACCCGTGCTCCGAGAAATA+TGG | + | chr7.2:17012724-17012743 | MS.gene04859:CDS | 50.0% | |
| AGGTCATCAACAAGGAACGC+TGG | - | chr7.2:17011929-17011948 | None:intergenic | 50.0% | |
| CACTTCAACAGCCTCAACAC+TGG | - | chr7.2:17012858-17012877 | None:intergenic | 50.0% | |
| CTCCATATTTCTCGGAGCAC+GGG | - | chr7.2:17012729-17012748 | None:intergenic | 50.0% | |
| GTCACTGTTGGAGCTGATGA+TGG | + | chr7.2:17012147-17012166 | MS.gene04859:CDS | 50.0% | |
| GTTGAAGTGGTAGCTGATGC+AGG | + | chr7.2:17012869-17012888 | MS.gene04859:CDS | 50.0% | |
| ! | CAGCCGTGCTTTTCGAAAAC+CGG | + | chr7.2:17012343-17012362 | MS.gene04859:CDS | 50.0% |
| ! | CAGTGTTGAGGCTGTTGAAG+TGG | + | chr7.2:17012856-17012875 | MS.gene04859:CDS | 50.0% |
| ! | GAGCATTACGCAGTCGCTTT+AGG | - | chr7.2:17013512-17013531 | None:intergenic | 50.0% |
| ! | GCTTGGAGTAAGGGTGTGAT+AGG | + | chr7.2:17012587-17012606 | MS.gene04859:CDS | 50.0% |
| !! | GGTCCTTCTGGAGTTGGTAA+AGG | + | chr7.2:17012638-17012657 | MS.gene04859:CDS | 50.0% |
| !! | GTTTGGTGCCTAGCACAGTT+GGG | - | chr7.2:17012302-17012321 | None:intergenic | 50.0% |
| !!! | GGAGGCCCGGTTTTTGTTTT+AGG | - | chr7.2:17012111-17012130 | None:intergenic | 50.0% |
| AGGGTTCACCCAACTGTGCT+AGG | + | chr7.2:17012291-17012310 | MS.gene04859:intron | 55.0% | |
| ATCGTGGGTACACTGGTGTG+TGG | + | chr7.2:17012970-17012989 | MS.gene04859:intron | 55.0% | |
| CCACTACTCACCTGTCACGA+AGG | - | chr7.2:17013396-17013415 | None:intergenic | 55.0% | |
| CCTTCGTGACAGGTGAGTAG+TGG | + | chr7.2:17013393-17013412 | MS.gene04859:intron | 55.0% | |
| CTGTCAAACAAACGGAGGCC+CGG | - | chr7.2:17012124-17012143 | None:intergenic | 55.0% | |
| GCTCAGGCTGAGATTGAGCA+AGG | + | chr7.2:17013528-17013547 | MS.gene04859:CDS | 55.0% | |
| !! | GGGGACTGAGGTTTGTTGCT+TGG | + | chr7.2:17012570-17012589 | MS.gene04859:CDS | 55.0% |
| !! | GGTTTGGTGCCTAGCACAGT+TGG | - | chr7.2:17012303-17012322 | None:intergenic | 55.0% |
| !! | TTGAGAAGCGCCTTCGTGAC+AGG | + | chr7.2:17013383-17013402 | MS.gene04859:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 17011917 | 17013950 | 17011917 | ID=MS.gene04859 |
| chr7.2 | mRNA | 17011917 | 17013950 | 17011917 | ID=MS.gene04859.t1;Parent=MS.gene04859 |
| chr7.2 | exon | 17011917 | 17012024 | 17011917 | ID=MS.gene04859.t1.exon1;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17011917 | 17012024 | 17011917 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17012144 | 17012217 | 17012144 | ID=MS.gene04859.t1.exon2;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17012144 | 17012217 | 17012144 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17012293 | 17012423 | 17012293 | ID=MS.gene04859.t1.exon3;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17012293 | 17012423 | 17012293 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17012552 | 17012895 | 17012552 | ID=MS.gene04859.t1.exon4;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17012552 | 17012895 | 17012552 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17013282 | 17013356 | 17013282 | ID=MS.gene04859.t1.exon5;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17013282 | 17013356 | 17013282 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17013495 | 17013620 | 17013495 | ID=MS.gene04859.t1.exon6;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17013495 | 17013620 | 17013495 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17013703 | 17013748 | 17013703 | ID=MS.gene04859.t1.exon7;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17013703 | 17013748 | 17013703 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| chr7.2 | exon | 17013842 | 17013950 | 17013842 | ID=MS.gene04859.t1.exon8;Parent=MS.gene04859.t1 |
| chr7.2 | CDS | 17013842 | 17013950 | 17013842 | ID=cds.MS.gene04859.t1;Parent=MS.gene04859.t1 |
| Gene Sequence |
| Protein sequence |
