Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072329.t1 | XP_024627007.1 | 99.4 | 362 | 2 | 0 | 1 | 362 | 2 | 363 | 8.40E-203 | 716.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072329.t1 | Q9M682 | 68.2 | 359 | 106 | 5 | 1 | 354 | 2 | 357 | 1.1e-129 | 464.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072329.t1 | A2Q3K9 | 99.4 | 362 | 2 | 0 | 1 | 362 | 2 | 363 | 6.0e-203 | 716.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene072329 | 0.812595 | 3.92E-51 | -1.69E-46 |
| MS.gene04915 | MS.gene072329 | 0.802229 | 6.19E-49 | -1.69E-46 |
| MS.gene049166 | MS.gene072329 | 0.810493 | 1.12E-50 | -1.69E-46 |
| MS.gene04917 | MS.gene072329 | 0.805968 | 1.03E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene072329 | 0.828293 | 9.75E-55 | -1.69E-46 |
| MS.gene049983 | MS.gene072329 | 0.808931 | 2.43E-50 | -1.69E-46 |
| MS.gene050084 | MS.gene072329 | 0.805225 | 1.48E-49 | -1.69E-46 |
| MS.gene050085 | MS.gene072329 | 0.821618 | 3.67E-53 | -1.69E-46 |
| MS.gene050114 | MS.gene072329 | 0.832055 | 1.18E-55 | -1.69E-46 |
| MS.gene050317 | MS.gene072329 | 0.807417 | 5.11E-50 | -1.69E-46 |
| MS.gene050359 | MS.gene072329 | 0.824837 | 6.50E-54 | -1.69E-46 |
| MS.gene050551 | MS.gene072329 | 0.802323 | 5.92E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene072329 | 0.860136 | 2.55E-63 | -1.69E-46 |
| MS.gene050689 | MS.gene072329 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene050737 | MS.gene072329 | 0.811729 | 6.05E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene072329 | 0.851796 | 7.03E-61 | -1.69E-46 |
| MS.gene050931 | MS.gene072329 | 0.811508 | 6.76E-51 | -1.69E-46 |
| MS.gene050941 | MS.gene072329 | 0.849246 | 3.66E-60 | -1.69E-46 |
| MS.gene051003 | MS.gene072329 | 0.858009 | 1.11E-62 | -1.69E-46 |
| MS.gene051184 | MS.gene072329 | 0.81418 | 1.76E-51 | -1.69E-46 |
| MS.gene051234 | MS.gene072329 | 0.824995 | 5.97E-54 | -1.69E-46 |
| MS.gene051343 | MS.gene072329 | 0.823026 | 1.73E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene072329 | 0.81293 | 3.31E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene072329 | 0.827807 | 1.28E-54 | -1.69E-46 |
| MS.gene052342 | MS.gene072329 | 0.83043 | 2.95E-55 | -1.69E-46 |
| MS.gene052434 | MS.gene072329 | 0.837923 | 3.90E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene072329 | 0.814961 | 1.18E-51 | -1.69E-46 |
| MS.gene053058 | MS.gene072329 | 0.843961 | 1.02E-58 | -1.69E-46 |
| MS.gene053167 | MS.gene072329 | 0.802928 | 4.45E-49 | -1.69E-46 |
| MS.gene053381 | MS.gene072329 | 0.833074 | 6.57E-56 | -1.69E-46 |
| MS.gene053564 | MS.gene072329 | 0.844871 | 5.78E-59 | -1.69E-46 |
| MS.gene053786 | MS.gene072329 | 0.824839 | 6.50E-54 | -1.69E-46 |
| MS.gene053895 | MS.gene072329 | -0.809288 | 2.04E-50 | -1.69E-46 |
| MS.gene054823 | MS.gene072329 | 0.812672 | 3.77E-51 | -1.69E-46 |
| MS.gene055222 | MS.gene072329 | 0.802026 | 6.82E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene072329 | 0.84798 | 8.20E-60 | -1.69E-46 |
| MS.gene055313 | MS.gene072329 | 0.818109 | 2.33E-52 | -1.69E-46 |
| MS.gene055314 | MS.gene072329 | 0.816002 | 6.92E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene072329 | 0.802466 | 5.54E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene072329 | 0.849657 | 2.81E-60 | -1.69E-46 |
| MS.gene055864 | MS.gene072329 | 0.822176 | 2.72E-53 | -1.69E-46 |
| MS.gene056097 | MS.gene072329 | 0.83409 | 3.66E-56 | -1.69E-46 |
| MS.gene056181 | MS.gene072329 | 0.853674 | 2.04E-61 | -1.69E-46 |
| MS.gene056390 | MS.gene072329 | 0.819019 | 1.45E-52 | -1.69E-46 |
| MS.gene056752 | MS.gene072329 | 0.805162 | 1.53E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene072329 | 0.825789 | 3.87E-54 | -1.69E-46 |
| MS.gene056831 | MS.gene072329 | 0.826083 | 3.30E-54 | -1.69E-46 |
| MS.gene056986 | MS.gene072329 | 0.807341 | 5.30E-50 | -1.69E-46 |
| MS.gene056992 | MS.gene072329 | 0.82454 | 7.64E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene072329 | -0.818016 | 2.44E-52 | -1.69E-46 |
| MS.gene058261 | MS.gene072329 | 0.808903 | 2.46E-50 | -1.69E-46 |
| MS.gene058292 | MS.gene072329 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene058639 | MS.gene072329 | 0.800142 | 1.66E-48 | -1.69E-46 |
| MS.gene058646 | MS.gene072329 | 0.825505 | 4.52E-54 | -1.69E-46 |
| MS.gene058654 | MS.gene072329 | 0.822424 | 2.39E-53 | -1.69E-46 |
| MS.gene058758 | MS.gene072329 | 0.850195 | 1.99E-60 | -1.69E-46 |
| MS.gene05880 | MS.gene072329 | 0.806283 | 8.87E-50 | -1.69E-46 |
| MS.gene059007 | MS.gene072329 | 0.81266 | 3.79E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene072329 | 0.809323 | 2.00E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene072329 | 0.832154 | 1.11E-55 | -1.69E-46 |
| MS.gene059360 | MS.gene072329 | 0.801605 | 8.32E-49 | -1.69E-46 |
| MS.gene06010 | MS.gene072329 | 0.844831 | 5.92E-59 | -1.69E-46 |
| MS.gene06011 | MS.gene072329 | 0.841724 | 3.99E-58 | -1.69E-46 |
| MS.gene060259 | MS.gene072329 | 0.814415 | 1.56E-51 | -1.69E-46 |
| MS.gene060296 | MS.gene072329 | 0.83499 | 2.18E-56 | -1.69E-46 |
| MS.gene060563 | MS.gene072329 | 0.81118 | 7.97E-51 | -1.69E-46 |
| MS.gene060869 | MS.gene072329 | 0.807362 | 5.25E-50 | -1.69E-46 |
| MS.gene060870 | MS.gene072329 | 0.805186 | 1.51E-49 | -1.69E-46 |
| MS.gene060932 | MS.gene072329 | 0.823792 | 1.14E-53 | -1.69E-46 |
| MS.gene061006 | MS.gene072329 | 0.830967 | 2.18E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene072329 | 0.837927 | 3.89E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072329 | MS.gene017918 | PPI |
| MS.gene01884 | MS.gene072329 | PPI |
| MS.gene00617 | MS.gene072329 | PPI |
| MS.gene072328 | MS.gene072329 | PPI |
| MS.gene072329 | MS.gene002926 | PPI |
| MS.gene047966 | MS.gene072329 | PPI |
| MS.gene014139 | MS.gene072329 | PPI |
| MS.gene072329 | MS.gene047200 | PPI |
| MS.gene017918 | MS.gene072329 | PPI |
| MS.gene072329 | MS.gene04879 | PPI |
| MS.gene04859 | MS.gene072329 | PPI |
| MS.gene072329 | MS.gene04860 | PPI |
| MS.gene072058 | MS.gene072329 | PPI |
| MS.gene00843 | MS.gene072329 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072329.t1 | MTR_7g092020 | 99.448 | 362 | 2 | 0 | 1 | 362 | 2 | 363 | 0.0 | 741 |
| MS.gene072329.t1 | MTR_7g092020 | 99.171 | 362 | 2 | 1 | 1 | 362 | 2 | 362 | 0.0 | 735 |
| MS.gene072329.t1 | MTR_7g092020 | 99.336 | 301 | 2 | 0 | 62 | 362 | 15 | 315 | 0.0 | 615 |
| MS.gene072329.t1 | MTR_7g092020 | 99.003 | 301 | 2 | 1 | 62 | 362 | 15 | 314 | 0.0 | 611 |
| MS.gene072329.t1 | MTR_0374s0010 | 82.000 | 100 | 18 | 0 | 225 | 324 | 1 | 100 | 9.55e-54 | 173 |
| MS.gene072329.t1 | MTR_2g021320 | 36.747 | 166 | 100 | 3 | 135 | 299 | 91 | 252 | 2.15e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072329.t1 | AT3G57550 | 68.156 | 358 | 109 | 4 | 1 | 354 | 2 | 358 | 1.60e-170 | 481 |
| MS.gene072329.t1 | AT3G57550 | 68.245 | 359 | 106 | 5 | 1 | 354 | 2 | 357 | 9.21e-170 | 479 |
| MS.gene072329.t1 | AT3G57550 | 68.245 | 359 | 106 | 5 | 1 | 354 | 2 | 357 | 9.21e-170 | 479 |
| MS.gene072329.t1 | AT2G41880 | 67.898 | 352 | 107 | 4 | 1 | 348 | 2 | 351 | 6.37e-164 | 462 |
| MS.gene072329.t1 | AT2G41880 | 67.898 | 352 | 107 | 4 | 1 | 348 | 2 | 351 | 6.37e-164 | 462 |
| MS.gene072329.t1 | AT2G41880 | 67.898 | 352 | 107 | 4 | 1 | 348 | 2 | 351 | 1.47e-163 | 463 |
| MS.gene072329.t1 | AT2G41880 | 67.898 | 352 | 107 | 4 | 1 | 348 | 2 | 351 | 1.47e-163 | 463 |
| MS.gene072329.t1 | AT2G41880 | 70.497 | 322 | 91 | 3 | 1 | 318 | 2 | 323 | 4.21e-158 | 447 |
| MS.gene072329.t1 | AT2G41880 | 62.730 | 381 | 107 | 5 | 1 | 348 | 2 | 380 | 1.66e-156 | 446 |
| MS.gene072329.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 1.27e-153 | 435 |
| MS.gene072329.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 2.09e-153 | 435 |
| MS.gene072329.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 2.09e-153 | 435 |
| MS.gene072329.t1 | AT3G06200 | 32.418 | 182 | 116 | 4 | 135 | 313 | 91 | 268 | 1.23e-20 | 90.9 |
Find 81 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGCACCCAAATT+AGG | 0.227947 | 7.2:-16985364 | MS.gene072329:intron |
| CTTCAGGATGGACCTCTTAA+TGG | 0.276233 | 7.2:-16987142 | MS.gene072329:CDS |
| ATTGTTATTAGTGGTCCTTC+TGG | 0.288971 | 7.2:-16986464 | MS.gene072329:CDS |
| TTCTCAAGCTCTTCCATTGA+TGG | 0.297823 | 7.2:+16985724 | None:intergenic |
| GAGCATTACGCAGTCGCTTT+AGG | 0.302663 | 7.2:+16985582 | None:intergenic |
| CCATATCTGGTCATCTGATT+TGG | 0.313449 | 7.2:+16986701 | None:intergenic |
| CCATCTTTCTCCATATTTCT+CGG | 0.318499 | 7.2:+16986356 | None:intergenic |
| TCACACTCTTCTCAGTAAAA+TGG | 0.321682 | 7.2:+16986324 | None:intergenic |
| CCAAATCAGATGACCAGATA+TGG | 0.340254 | 7.2:-16986701 | MS.gene072329:CDS |
| AAGGAATTCCCTTCGATGTT+TGG | 0.340728 | 7.2:-16986407 | MS.gene072329:CDS |
| AACCCGTGCTCCGAGAAATA+TGG | 0.350022 | 7.2:-16986366 | MS.gene072329:CDS |
| CAGAAATTACTGGGACTTGA+TGG | 0.358399 | 7.2:-16985391 | MS.gene072329:CDS |
| GTTCCTTGTTGATGACCTTC+AGG | 0.367183 | 7.2:-16987158 | MS.gene072329:CDS |
| ATCATAAGCTGCATCTCTTC+TGG | 0.369022 | 7.2:-16985186 | MS.gene072329:CDS |
| TTCATTGGTGCAGAAATTAC+TGG | 0.369583 | 7.2:-16985401 | MS.gene072329:intron |
| TCTGTCCATGGTAATTTGTA+TGG | 0.376553 | 7.2:-16986260 | MS.gene072329:CDS |
| CTCGAATTTGCTTCTGTCCA+TGG | 0.403156 | 7.2:-16986272 | MS.gene072329:CDS |
| GAGAAACCTATTGTTATTAG+TGG | 0.405407 | 7.2:-16986473 | MS.gene072329:CDS |
| ATTCTTGATATTGATGTTCA+AGG | 0.419974 | 7.2:-16985802 | MS.gene072329:CDS |
| TTCAAGGAGCAAGATCTGTT+AGG | 0.421033 | 7.2:-16985786 | MS.gene072329:CDS |
| GTCTGTCATAACACTCTTCA+AGG | 0.422735 | 7.2:+16985498 | None:intergenic |
| TGAGGTTGTTGCTTGGAGTA+AGG | 0.423659 | 7.2:-16986513 | MS.gene072329:CDS |
| TGGACAGACAAAGATGAATA+TGG | 0.427437 | 7.2:+16985747 | None:intergenic |
| TGGAACCTTTCTTAAGAACT+AGG | 0.427990 | 7.2:+16986721 | None:intergenic |
| CTTTGTCTGTCCACCATCAA+TGG | 0.430337 | 7.2:-16985737 | MS.gene072329:CDS |
| GAAGGACCACTAATAACAAT+AGG | 0.431055 | 7.2:+16986467 | None:intergenic |
| ATTAGTGGTCCTTCTGGAGT+TGG | 0.435618 | 7.2:-16986458 | MS.gene072329:CDS |
| CTCCATATTTCTCGGAGCAC+GGG | 0.445632 | 7.2:+16986364 | None:intergenic |
| CGGATCCTAGTTCTTAAGAA+AGG | 0.451808 | 7.2:-16986726 | MS.gene072329:CDS |
| TCTCCATATTTCTCGGAGCA+CGG | 0.454075 | 7.2:+16986363 | None:intergenic |
| GGTTTGGTGCCTAGCACAGT+TGG | 0.455219 | 7.2:+16986789 | None:intergenic |
| TTCAATTCAAGACCATTAAG+AGG | 0.459949 | 7.2:+16987130 | None:intergenic |
| CTTTCTTAAGAACTAGGATC+CGG | 0.474576 | 7.2:+16986727 | None:intergenic |
| TTGAGAAGCGCCTTCGTGAC+AGG | 0.480044 | 7.2:-16985708 | MS.gene072329:intron |
| TCCATTGCATGACAAGGGTT+TGG | 0.480420 | 7.2:+16986773 | None:intergenic |
| TCTTCTCAGTAAAATGGTAA+TGG | 0.482341 | 7.2:+16986330 | None:intergenic |
| TTGACCGTAGTCTTGGAGAA+TGG | 0.486043 | 7.2:-16986893 | MS.gene072329:intron |
| CTGTCCATGGTAATTTGTAT+GGG | 0.487223 | 7.2:-16986259 | MS.gene072329:CDS |
| CTTGTTGATGACCTTCAGGA+TGG | 0.487351 | 7.2:-16987154 | MS.gene072329:CDS |
| TCACCTCTAGAAACCATATC+TGG | 0.487464 | 7.2:+16986688 | None:intergenic |
| CGAGAAATATGGAGAAAGAT+GGG | 0.489516 | 7.2:-16986355 | MS.gene072329:CDS |
| CCGAGAAATATGGAGAAAGA+TGG | 0.490569 | 7.2:-16986356 | MS.gene072329:CDS |
| GTTTGACAGTATGTCACTGT+TGG | 0.492792 | 7.2:-16986954 | MS.gene072329:intron |
| ATGGAGAAAGAGATCAAAAG+TGG | 0.501117 | 7.2:-16986302 | MS.gene072329:CDS |
| GAGGTTGTTGCTTGGAGTAA+GGG | 0.507302 | 7.2:-16986512 | MS.gene072329:CDS |
| AAAGCGACTGCGTAATGCTC+AGG | 0.512562 | 7.2:-16985579 | MS.gene072329:CDS |
| GGTCCTTCTGGAGTTGGTAA+AGG | 0.512799 | 7.2:-16986452 | MS.gene072329:CDS |
| GTTTGGTGCCTAGCACAGTT+GGG | 0.517021 | 7.2:+16986790 | None:intergenic |
| ACTAATATCAATGCTCATGA+AGG | 0.517312 | 7.2:-16986426 | MS.gene072329:CDS |
| GCTTGGAGTAAGGGTGTGAT+AGG | 0.517396 | 7.2:-16986503 | MS.gene072329:CDS |
| TCAAGGAGCAAGATCTGTTA+GGG | 0.522205 | 7.2:-16985785 | MS.gene072329:CDS |
| TTAGACACTGAATGATCTGT+TGG | 0.523783 | 7.2:+16985225 | None:intergenic |
| GTCACTGTTGGAGCTGATGA+TGG | 0.527989 | 7.2:-16986942 | MS.gene072329:CDS |
| AGAGTGTTATGACAGACTTA+AGG | 0.531515 | 7.2:-16985492 | MS.gene072329:intron |
| GTTGAAGTGGTAGCTGATGC+AGG | 0.538538 | 7.2:-16986221 | MS.gene072329:CDS |
| TGGGGACTGAGGTTGTTGCT+TGG | 0.545642 | 7.2:-16986520 | MS.gene072329:CDS |
| GTTGGTAGATTAATCTCTCT+AGG | 0.546143 | 7.2:+16985243 | None:intergenic |
| TGCAAAACAACTACTGTCGT+TGG | 0.554632 | 7.2:-16987097 | MS.gene072329:CDS |
| TCAAGCTCTTCCATTGATGG+TGG | 0.563601 | 7.2:+16985727 | None:intergenic |
| AGGGTTCACCCAACTGTGCT+AGG | 0.568022 | 7.2:-16986798 | MS.gene072329:CDS |
| CATCTCTTCTGGACTTGACA+AGG | 0.573859 | 7.2:-16985175 | MS.gene072329:CDS |
| AATGGTCTTGAATTGAACAA+TGG | 0.577419 | 7.2:-16987124 | MS.gene072329:CDS |
| TCATTGGTGCAGAAATTACT+GGG | 0.585295 | 7.2:-16985400 | MS.gene072329:intron |
| ACCAAACCCTTGTCATGCAA+TGG | 0.601097 | 7.2:-16986774 | MS.gene072329:CDS |
| AAACAGAGGGACTGAGACTG+AGG | 0.601275 | 7.2:-16985612 | MS.gene072329:intron |
| CAGTGTTGAGGCTGTTGAAG+TGG | 0.604055 | 7.2:-16986234 | MS.gene072329:CDS |
| CATTAAGAGGTCCATCCTGA+AGG | 0.605764 | 7.2:+16987143 | None:intergenic |
| TGAGTGTCCATTGCATGACA+AGG | 0.606716 | 7.2:+16986767 | None:intergenic |
| CTGACCATTCTCCAAGACTA+CGG | 0.617954 | 7.2:+16986889 | None:intergenic |
| CATCCTGAAGGTCATCAACA+AGG | 0.626232 | 7.2:+16987155 | None:intergenic |
| CACTTCAACAGCCTCAACAC+TGG | 0.628025 | 7.2:+16986235 | None:intergenic |
| GCTCAGGCTGAGATTGAGCA+AGG | 0.631772 | 7.2:-16985563 | MS.gene072329:CDS |
| GTTCCTTTACCAACTCCAGA+AGG | 0.638608 | 7.2:+16986449 | None:intergenic |
| TGACCAGATATGGTTTCTAG+AGG | 0.640137 | 7.2:-16986691 | MS.gene072329:intron |
| GAGTGTCCATTGCATGACAA+GGG | 0.640152 | 7.2:+16986768 | None:intergenic |
| CTGAATATGTTAGACAGCAG+AGG | 0.642982 | 7.2:-16986550 | MS.gene072329:CDS |
| CCACTACTCACCTGTCACGA+AGG | 0.647896 | 7.2:+16985698 | None:intergenic |
| TGGTCCCATACAAATTACCA+TGG | 0.653492 | 7.2:+16986255 | None:intergenic |
| AGGTCATCAACAAGGAACGC+TGG | 0.660018 | 7.2:+16987163 | None:intergenic |
| GAGAAATATGGAGAAAGATG+GGG | 0.669595 | 7.2:-16986354 | MS.gene072329:CDS |
| TTTGTATGGGACCAGTGTTG+AGG | 0.692634 | 7.2:-16986246 | MS.gene072329:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCTTACCTAATT+TGG | + | chr7.2:16986982-16987001 | None:intergenic | 15.0% |
| !! | AAAAAATTCTTACCTAATTT+GGG | + | chr7.2:16986981-16987000 | None:intergenic | 15.0% |
| !!! | ATTAAGTTAAGACTAAATTT+TGG | + | chr7.2:16986691-16986710 | None:intergenic | 15.0% |
| !!! | TAAATGCTAATTTGTTTTAT+TGG | - | chr7.2:16985744-16985763 | MS.gene072329:CDS | 15.0% |
| !!! | TTAATTTTTAAATATTCCAG+AGG | - | chr7.2:16986502-16986521 | MS.gene072329:CDS | 15.0% |
| !! | ATATTAGAACATTAAATCGT+GGG | - | chr7.2:16986195-16986214 | MS.gene072329:intron | 20.0% |
| !!! | AATCAATTCTAAAAACTTCA+AGG | + | chr7.2:16986324-16986343 | None:intergenic | 20.0% |
| !!! | AATTCATTTTATTTGAAGCT+TGG | - | chr7.2:16986172-16986191 | MS.gene072329:intron | 20.0% |
| !!! | TAATTTGTTTTATTGGTACT+AGG | - | chr7.2:16985751-16985770 | MS.gene072329:CDS | 20.0% |
| !!! | TTTGTTACTGATATTCATTT+TGG | - | chr7.2:16985504-16985523 | MS.gene072329:CDS | 20.0% |
| !!! | TTTTTGTTTTAGGCATAAAT+TGG | + | chr7.2:16985342-16985361 | None:intergenic | 20.0% |
| ! | ATTCTTGATATTGATGTTCA+AGG | - | chr7.2:16986528-16986547 | MS.gene072329:CDS | 25.0% |
| ! | CTGAAAATTTACATTCAGTT+TGG | + | chr7.2:16987011-16987030 | None:intergenic | 25.0% |
| ! | GATATTAGAACATTAAATCG+TGG | - | chr7.2:16986194-16986213 | MS.gene072329:intron | 25.0% |
| ! | TTTATGCCTAAAACAAAAAC+CGG | - | chr7.2:16985343-16985362 | MS.gene072329:intron | 25.0% |
| !!! | ACTTAATGTTTTGAAAACAG+AGG | - | chr7.2:16986704-16986723 | MS.gene072329:CDS | 25.0% |
| !!! | CTTAATGTTTTGAAAACAGA+GGG | - | chr7.2:16986705-16986724 | MS.gene072329:CDS | 25.0% |
| ACTAATATCAATGCTCATGA+AGG | - | chr7.2:16985904-16985923 | MS.gene072329:intron | 30.0% | |
| CATGTTAGTATTTACCTTCA+TGG | + | chr7.2:16987043-16987062 | None:intergenic | 30.0% | |
| CCAATGAACATACGTATATT+AGG | + | chr7.2:16986917-16986936 | None:intergenic | 30.0% | |
| CCTAATATACGTATGTTCAT+TGG | - | chr7.2:16986914-16986933 | MS.gene072329:CDS | 30.0% | |
| GGTAAGAAATTGTCGTAATT+CGG | + | chr7.2:16986475-16986494 | None:intergenic | 30.0% | |
| GTCAAAAATTTGAACGTCAA+TGG | + | chr7.2:16985422-16985441 | None:intergenic | 30.0% | |
| TCTTCTCAGTAAAATGGTAA+TGG | + | chr7.2:16986003-16986022 | None:intergenic | 30.0% | |
| TGTCGAAATCTATGGTAATT+TGG | + | chr7.2:16986244-16986263 | None:intergenic | 30.0% | |
| TTATGCCTAAAACAAAAACC+GGG | - | chr7.2:16985344-16985363 | MS.gene072329:intron | 30.0% | |
| TTCAATTCAAGACCATTAAG+AGG | + | chr7.2:16985203-16985222 | None:intergenic | 30.0% | |
| TTCAGTTTATAAAGCCATGA+AGG | - | chr7.2:16987026-16987045 | MS.gene072329:intron | 30.0% | |
| ! | AATGGTCTTGAATTGAACAA+TGG | - | chr7.2:16985206-16985225 | MS.gene072329:CDS | 30.0% |
| ! | GAGAAACCTATTGTTATTAG+TGG | - | chr7.2:16985857-16985876 | MS.gene072329:intron | 30.0% |
| ! | GATATTCATTTTGGATTGCA+GGG | - | chr7.2:16985513-16985532 | MS.gene072329:CDS | 30.0% |
| ! | TGATATTCATTTTGGATTGC+AGG | - | chr7.2:16985512-16985531 | MS.gene072329:CDS | 30.0% |
| !! | AGGATGATAAGAACTTTTTC+AGG | + | chr7.2:16986897-16986916 | None:intergenic | 30.0% |
| !!! | TAAGAACTTTTTCAGGATTG+AGG | + | chr7.2:16986890-16986909 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATTGGTACTAGG+TGG | - | chr7.2:16985754-16985773 | MS.gene072329:CDS | 30.0% |
| AAGGAGTCAAAGAATTCGTA+AGG | - | chr7.2:16987174-16987193 | MS.gene072329:CDS | 35.0% | |
| AATCCACAGTTCAGCAATAA+TGG | + | chr7.2:16986403-16986422 | None:intergenic | 35.0% | |
| ACAGAAAAACCAAACATCGA+AGG | + | chr7.2:16985935-16985954 | None:intergenic | 35.0% | |
| AGACAGCAGAGGAAAAAATT+GGG | - | chr7.2:16985791-16985810 | MS.gene072329:CDS | 35.0% | |
| ATGGAGAAAGAGATCAAAAG+TGG | - | chr7.2:16986028-16986047 | MS.gene072329:intron | 35.0% | |
| CAGAAAAACCAAACATCGAA+GGG | + | chr7.2:16985934-16985953 | None:intergenic | 35.0% | |
| CCATCTTTCTCCATATTTCT+CGG | + | chr7.2:16985977-16985996 | None:intergenic | 35.0% | |
| CGAGAAATATGGAGAAAGAT+GGG | - | chr7.2:16985975-16985994 | MS.gene072329:intron | 35.0% | |
| CTTTCTTAAGAACTAGGATC+CGG | + | chr7.2:16985606-16985625 | None:intergenic | 35.0% | |
| GAAGGACCACTAATAACAAT+AGG | + | chr7.2:16985866-16985885 | None:intergenic | 35.0% | |
| GAGAAATATGGAGAAAGATG+GGG | - | chr7.2:16985976-16985995 | MS.gene072329:intron | 35.0% | |
| GTGACATACTGTCAAACAAA+CGG | + | chr7.2:16985373-16985392 | None:intergenic | 35.0% | |
| TAGACAGCAGAGGAAAAAAT+TGG | - | chr7.2:16985790-16985809 | MS.gene072329:CDS | 35.0% | |
| TCACACTCTTCTCAGTAAAA+TGG | + | chr7.2:16986009-16986028 | None:intergenic | 35.0% | |
| TCATTGGTGCAGAAATTACT+GGG | - | chr7.2:16986930-16986949 | MS.gene072329:CDS | 35.0% | |
| TGGAACCTTTCTTAAGAACT+AGG | + | chr7.2:16985612-16985631 | None:intergenic | 35.0% | |
| TGGACAGACAAAGATGAATA+TGG | + | chr7.2:16986586-16986605 | None:intergenic | 35.0% | |
| TTAGACACTGAATGATCTGT+TGG | + | chr7.2:16987108-16987127 | None:intergenic | 35.0% | |
| TTCATTCTGAGTTCAGCTAA+AGG | - | chr7.2:16986277-16986296 | MS.gene072329:CDS | 35.0% | |
| TTCATTGGTGCAGAAATTAC+TGG | - | chr7.2:16986929-16986948 | MS.gene072329:CDS | 35.0% | |
| ! | AGAGTGTTATGACAGACTTA+AGG | - | chr7.2:16986838-16986857 | MS.gene072329:intron | 35.0% |
| ! | ATTGTTATTAGTGGTCCTTC+TGG | - | chr7.2:16985866-16985885 | MS.gene072329:intron | 35.0% |
| ! | CAAATTTTTGACCGTAGTCT+TGG | - | chr7.2:16985430-16985449 | MS.gene072329:intron | 35.0% |
| ! | CTGTCCATGGTAATTTGTAT+GGG | - | chr7.2:16986071-16986090 | MS.gene072329:intron | 35.0% |
| ! | GTTGGTAGATTAATCTCTCT+AGG | + | chr7.2:16987090-16987109 | None:intergenic | 35.0% |
| ! | TCTGTCCATGGTAATTTGTA+TGG | - | chr7.2:16986070-16986089 | MS.gene072329:intron | 35.0% |
| !! | TTTTACTGAGAAGAGTGTGA+TGG | - | chr7.2:16986009-16986028 | MS.gene072329:intron | 35.0% |
| AACCACAACAACGTAATGAG+AGG | + | chr7.2:16986452-16986471 | None:intergenic | 40.0% | |
| AACCTCTCATTACGTTGTTG+TGG | - | chr7.2:16986447-16986466 | MS.gene072329:CDS | 40.0% | |
| AAGGAATTCCCTTCGATGTT+TGG | - | chr7.2:16985923-16985942 | MS.gene072329:intron | 40.0% | |
| ACATACTGTCAAACAAACGG+AGG | + | chr7.2:16985370-16985389 | None:intergenic | 40.0% | |
| ACATTAAATCGTGGGTACAC+TGG | - | chr7.2:16986203-16986222 | MS.gene072329:intron | 40.0% | |
| ATCATAAGCTGCATCTCTTC+TGG | - | chr7.2:16987144-16987163 | MS.gene072329:CDS | 40.0% | |
| CAATATCAAGAATGCACCTC+TGG | + | chr7.2:16986521-16986540 | None:intergenic | 40.0% | |
| CAGAAATTACTGGGACTTGA+TGG | - | chr7.2:16986939-16986958 | MS.gene072329:CDS | 40.0% | |
| CCAAATCAGATGACCAGATA+TGG | - | chr7.2:16985629-16985648 | MS.gene072329:intron | 40.0% | |
| CCATATCTGGTCATCTGATT+TGG | + | chr7.2:16985632-16985651 | None:intergenic | 40.0% | |
| CCGAGAAATATGGAGAAAGA+TGG | - | chr7.2:16985974-16985993 | MS.gene072329:intron | 40.0% | |
| CCTATGACTTCGAGAATGTA+AGG | - | chr7.2:16986358-16986377 | MS.gene072329:CDS | 40.0% | |
| CCTTACATTCTCGAAGTCAT+AGG | + | chr7.2:16986361-16986380 | None:intergenic | 40.0% | |
| CTGAATATGTTAGACAGCAG+AGG | - | chr7.2:16985780-16985799 | MS.gene072329:CDS | 40.0% | |
| GACAGCAGAGGAAAAAATTG+GGG | - | chr7.2:16985792-16985811 | MS.gene072329:CDS | 40.0% | |
| GCAAGACTTGTCGAAATCTA+TGG | + | chr7.2:16986252-16986271 | None:intergenic | 40.0% | |
| GCCTTACAAAAACAGCTATG+AGG | + | chr7.2:16985482-16985501 | None:intergenic | 40.0% | |
| GTCTGTCATAACACTCTTCA+AGG | + | chr7.2:16986835-16986854 | None:intergenic | 40.0% | |
| GTTTGACAGTATGTCACTGT+TGG | - | chr7.2:16985376-16985395 | MS.gene072329:CDS | 40.0% | |
| TACTGTCGTTGGCGAAAAAA+CGG | - | chr7.2:16985244-16985263 | MS.gene072329:CDS | 40.0% | |
| TCAAGGAGCAAGATCTGTTA+GGG | - | chr7.2:16986545-16986564 | MS.gene072329:CDS | 40.0% | |
| TGCAAAACAACTACTGTCGT+TGG | - | chr7.2:16985233-16985252 | MS.gene072329:CDS | 40.0% | |
| TGGTCCCATACAAATTACCA+TGG | + | chr7.2:16986078-16986097 | None:intergenic | 40.0% | |
| TTCAAGGAGCAAGATCTGTT+AGG | - | chr7.2:16986544-16986563 | MS.gene072329:CDS | 40.0% | |
| TTCTCAAGCTCTTCCATTGA+TGG | + | chr7.2:16986609-16986628 | None:intergenic | 40.0% | |
| ! | CGGATCCTAGTTCTTAAGAA+AGG | - | chr7.2:16985604-16985623 | MS.gene072329:CDS | 40.0% |
| ! | GAGGAAGTTTTTGCTTTAGC+AGG | + | chr7.2:16986871-16986890 | None:intergenic | 40.0% |
| ! | GTGGATTATAGCGTTGTTAG+AGG | - | chr7.2:16986416-16986435 | MS.gene072329:CDS | 40.0% |
| ! | TCACCTCTAGAAACCATATC+TGG | + | chr7.2:16985645-16985664 | None:intergenic | 40.0% |
| ! | TGACCAGATATGGTTTCTAG+AGG | - | chr7.2:16985639-16985658 | MS.gene072329:intron | 40.0% |
| !!! | GCCTCATAGCTGTTTTTGTA+AGG | - | chr7.2:16985478-16985497 | MS.gene072329:intron | 40.0% |
| ACCAAACCCTTGTCATGCAA+TGG | - | chr7.2:16985556-16985575 | MS.gene072329:CDS | 45.0% | |
| CATCCTGAAGGTCATCAACA+AGG | + | chr7.2:16985178-16985197 | None:intergenic | 45.0% | |
| CATCTCTTCTGGACTTGACA+AGG | - | chr7.2:16987155-16987174 | MS.gene072329:CDS | 45.0% | |
| CATTAAGAGGTCCATCCTGA+AGG | + | chr7.2:16985190-16985209 | None:intergenic | 45.0% | |
| CTGACCATTCTCCAAGACTA+CGG | + | chr7.2:16985444-16985463 | None:intergenic | 45.0% | |
| CTTCAGGATGGACCTCTTAA+TGG | - | chr7.2:16985188-16985207 | MS.gene072329:CDS | 45.0% | |
| CTTTGTCTGTCCACCATCAA+TGG | - | chr7.2:16986593-16986612 | MS.gene072329:intron | 45.0% | |
| GAGCCATTATTGCTGAACTG+TGG | - | chr7.2:16986397-16986416 | MS.gene072329:CDS | 45.0% | |
| GAGGAAAAAATTGGGGACTG+AGG | - | chr7.2:16985799-16985818 | MS.gene072329:CDS | 45.0% | |
| GAGTGTCCATTGCATGACAA+GGG | + | chr7.2:16985565-16985584 | None:intergenic | 45.0% | |
| GTTCCTTTACCAACTCCAGA+AGG | + | chr7.2:16985884-16985903 | None:intergenic | 45.0% | |
| GTTGCAACTGCACCCAAATT+AGG | - | chr7.2:16986966-16986985 | MS.gene072329:intron | 45.0% | |
| TCAAGCTCTTCCATTGATGG+TGG | + | chr7.2:16986606-16986625 | None:intergenic | 45.0% | |
| TCCATTGCATGACAAGGGTT+TGG | + | chr7.2:16985560-16985579 | None:intergenic | 45.0% | |
| TCTCCATATTTCTCGGAGCA+CGG | + | chr7.2:16985970-16985989 | None:intergenic | 45.0% | |
| TGAGTGTCCATTGCATGACA+AGG | + | chr7.2:16985566-16985585 | None:intergenic | 45.0% | |
| TTTGTATGGGACCAGTGTTG+AGG | - | chr7.2:16986084-16986103 | MS.gene072329:intron | 45.0% | |
| ! | CTCGAATTTGCTTCTGTCCA+TGG | - | chr7.2:16986058-16986077 | MS.gene072329:intron | 45.0% |
| ! | GAGGTTGTTGCTTGGAGTAA+GGG | - | chr7.2:16985818-16985837 | MS.gene072329:intron | 45.0% |
| ! | GATCCGGTTTTCGAAAAGCA+CGG | + | chr7.2:16985590-16985609 | None:intergenic | 45.0% |
| ! | TGAGGTTGTTGCTTGGAGTA+AGG | - | chr7.2:16985817-16985836 | MS.gene072329:intron | 45.0% |
| ! | TTAATCTCTCTAGGTGCTGC+TGG | + | chr7.2:16987081-16987100 | None:intergenic | 45.0% |
| ! | TTGACCGTAGTCTTGGAGAA+TGG | - | chr7.2:16985437-16985456 | MS.gene072329:intron | 45.0% |
| !! | ATTAGTGGTCCTTCTGGAGT+TGG | - | chr7.2:16985872-16985891 | MS.gene072329:intron | 45.0% |
| !! | CTTGTTGATGACCTTCAGGA+TGG | - | chr7.2:16985176-16985195 | MS.gene072329:CDS | 45.0% |
| !! | GTTCCTTGTTGATGACCTTC+AGG | - | chr7.2:16985172-16985191 | MS.gene072329:CDS | 45.0% |
| !! | TATTTAAAAATTAAAATATC+AGG | + | chr7.2:16986496-16986515 | None:intergenic | 5.0% |
| AAACAGAGGGACTGAGACTG+AGG | - | chr7.2:16986718-16986737 | MS.gene072329:CDS | 50.0% | |
| AAAGCGACTGCGTAATGCTC+AGG | - | chr7.2:16986751-16986770 | MS.gene072329:CDS | 50.0% | |
| AACCCGTGCTCCGAGAAATA+TGG | - | chr7.2:16985964-16985983 | MS.gene072329:intron | 50.0% | |
| AGGTCATCAACAAGGAACGC+TGG | + | chr7.2:16985170-16985189 | None:intergenic | 50.0% | |
| CACTTCAACAGCCTCAACAC+TGG | + | chr7.2:16986098-16986117 | None:intergenic | 50.0% | |
| CTCCATATTTCTCGGAGCAC+GGG | + | chr7.2:16985969-16985988 | None:intergenic | 50.0% | |
| GTCACTGTTGGAGCTGATGA+TGG | - | chr7.2:16985388-16985407 | MS.gene072329:CDS | 50.0% | |
| GTTGAAGTGGTAGCTGATGC+AGG | - | chr7.2:16986109-16986128 | MS.gene072329:intron | 50.0% | |
| ! | CAGCCGTGCTTTTCGAAAAC+CGG | - | chr7.2:16985584-16985603 | MS.gene072329:CDS | 50.0% |
| ! | CAGTGTTGAGGCTGTTGAAG+TGG | - | chr7.2:16986096-16986115 | MS.gene072329:intron | 50.0% |
| ! | GAGCATTACGCAGTCGCTTT+AGG | + | chr7.2:16986751-16986770 | None:intergenic | 50.0% |
| ! | GCTTGGAGTAAGGGTGTGAT+AGG | - | chr7.2:16985827-16985846 | MS.gene072329:intron | 50.0% |
| !! | GGTCCTTCTGGAGTTGGTAA+AGG | - | chr7.2:16985878-16985897 | MS.gene072329:intron | 50.0% |
| !! | GTTTGGTGCCTAGCACAGTT+GGG | + | chr7.2:16985543-16985562 | None:intergenic | 50.0% |
| !!! | GGAGGCCCGGTTTTTGTTTT+AGG | + | chr7.2:16985352-16985371 | None:intergenic | 50.0% |
| AGGGTTCACCCAACTGTGCT+AGG | - | chr7.2:16985532-16985551 | MS.gene072329:CDS | 55.0% | |
| ATCGTGGGTACACTGGTGTG+TGG | - | chr7.2:16986210-16986229 | MS.gene072329:intron | 55.0% | |
| CCACTACTCACCTGTCACGA+AGG | + | chr7.2:16986635-16986654 | None:intergenic | 55.0% | |
| CCTTCGTGACAGGTGAGTAG+TGG | - | chr7.2:16986632-16986651 | MS.gene072329:intron | 55.0% | |
| CTGTCAAACAAACGGAGGCC+CGG | + | chr7.2:16985365-16985384 | None:intergenic | 55.0% | |
| GCTCAGGCTGAGATTGAGCA+AGG | - | chr7.2:16986767-16986786 | MS.gene072329:CDS | 55.0% | |
| TGGGGACTGAGGTTGTTGCT+TGG | - | chr7.2:16985810-16985829 | MS.gene072329:CDS | 55.0% | |
| !! | GGTTTGGTGCCTAGCACAGT+TGG | + | chr7.2:16985544-16985563 | None:intergenic | 55.0% |
| !! | TTGAGAAGCGCCTTCGTGAC+AGG | - | chr7.2:16986622-16986641 | MS.gene072329:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 16985158 | 16987194 | 16985158 | ID=MS.gene072329 |
| chr7.2 | mRNA | 16985158 | 16987194 | 16985158 | ID=MS.gene072329.t1;Parent=MS.gene072329 |
| chr7.2 | exon | 16987087 | 16987194 | 16987087 | ID=MS.gene072329.t1.exon1;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16987087 | 16987194 | 16987087 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16986894 | 16986967 | 16986894 | ID=MS.gene072329.t1.exon2;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16986894 | 16986967 | 16986894 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16986692 | 16986818 | 16986692 | ID=MS.gene072329.t1.exon3;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16986692 | 16986818 | 16986692 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16986217 | 16986579 | 16986217 | ID=MS.gene072329.t1.exon4;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16986217 | 16986579 | 16986217 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16985709 | 16985830 | 16985709 | ID=MS.gene072329.t1.exon5;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16985709 | 16985830 | 16985709 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16985493 | 16985628 | 16985493 | ID=MS.gene072329.t1.exon6;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16985493 | 16985628 | 16985493 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16985365 | 16985410 | 16985365 | ID=MS.gene072329.t1.exon7;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16985365 | 16985410 | 16985365 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| chr7.2 | exon | 16985158 | 16985270 | 16985158 | ID=MS.gene072329.t1.exon8;Parent=MS.gene072329.t1 |
| chr7.2 | CDS | 16985158 | 16985270 | 16985158 | ID=cds.MS.gene072329.t1;Parent=MS.gene072329.t1 |
| Gene Sequence |
| Protein sequence |
