Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04860.t1 | XP_024627007.1 | 99.2 | 393 | 3 | 0 | 1 | 393 | 2 | 394 | 3.70E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04860.t1 | Q9M682 | 66.5 | 394 | 119 | 7 | 1 | 388 | 2 | 388 | 4.3e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04860.t1 | A2Q3K9 | 99.2 | 393 | 3 | 0 | 1 | 393 | 2 | 394 | 2.6e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene01884 | MS.gene04860 | PPI |
| MS.gene00617 | MS.gene04860 | PPI |
| MS.gene072328 | MS.gene04860 | PPI |
| MS.gene072058 | MS.gene04860 | PPI |
| MS.gene00843 | MS.gene04860 | PPI |
| MS.gene047966 | MS.gene04860 | PPI |
| MS.gene04860 | MS.gene047200 | PPI |
| MS.gene014139 | MS.gene04860 | PPI |
| MS.gene017918 | MS.gene04860 | PPI |
| MS.gene04859 | MS.gene04860 | PPI |
| MS.gene072329 | MS.gene04860 | PPI |
| MS.gene04860 | MS.gene04879 | PPI |
| MS.gene002926 | MS.gene04860 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04860.t1 | MTR_7g092020 | 99.237 | 393 | 3 | 0 | 1 | 393 | 2 | 394 | 0.0 | 800 |
| MS.gene04860.t1 | MTR_7g092020 | 99.171 | 362 | 2 | 1 | 1 | 362 | 2 | 362 | 0.0 | 735 |
| MS.gene04860.t1 | MTR_7g092020 | 99.096 | 332 | 3 | 0 | 62 | 393 | 15 | 346 | 0.0 | 676 |
| MS.gene04860.t1 | MTR_7g092020 | 98.795 | 332 | 3 | 1 | 62 | 393 | 15 | 345 | 0.0 | 672 |
| MS.gene04860.t1 | MTR_0374s0010 | 82.000 | 100 | 18 | 0 | 225 | 324 | 1 | 100 | 1.83e-53 | 173 |
| MS.gene04860.t1 | MTR_2g021320 | 36.747 | 166 | 100 | 3 | 135 | 299 | 91 | 252 | 3.06e-24 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene04860.t1 | AT3G57550 | 66.412 | 393 | 122 | 6 | 1 | 388 | 2 | 389 | 6.16e-180 | 506 |
| MS.gene04860.t1 | AT3G57550 | 66.497 | 394 | 119 | 7 | 1 | 388 | 2 | 388 | 5.84e-179 | 503 |
| MS.gene04860.t1 | AT3G57550 | 66.497 | 394 | 119 | 7 | 1 | 388 | 2 | 388 | 5.84e-179 | 503 |
| MS.gene04860.t1 | AT2G41880 | 66.494 | 385 | 119 | 5 | 1 | 381 | 2 | 380 | 3.82e-175 | 493 |
| MS.gene04860.t1 | AT2G41880 | 66.494 | 385 | 119 | 5 | 1 | 381 | 2 | 380 | 3.82e-175 | 493 |
| MS.gene04860.t1 | AT2G41880 | 62.077 | 414 | 118 | 7 | 1 | 381 | 2 | 409 | 9.03e-168 | 476 |
| MS.gene04860.t1 | AT2G41880 | 67.898 | 352 | 107 | 4 | 1 | 348 | 2 | 351 | 1.73e-163 | 463 |
| MS.gene04860.t1 | AT2G41880 | 67.898 | 352 | 107 | 4 | 1 | 348 | 2 | 351 | 1.73e-163 | 463 |
| MS.gene04860.t1 | AT2G41880 | 70.497 | 322 | 91 | 3 | 1 | 318 | 2 | 323 | 1.37e-157 | 447 |
| MS.gene04860.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 3.97e-153 | 435 |
| MS.gene04860.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 6.53e-153 | 435 |
| MS.gene04860.t1 | AT2G41880 | 70.382 | 314 | 89 | 3 | 1 | 310 | 2 | 315 | 6.53e-153 | 435 |
| MS.gene04860.t1 | AT3G06200 | 32.418 | 182 | 116 | 4 | 135 | 313 | 91 | 268 | 1.89e-20 | 90.9 |
Find 88 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGCACCCAAATT+AGG | 0.227947 | 7.2:-16951644 | MS.gene04860:intron |
| CTTCAGGATGGACCTCTTAA+TGG | 0.276233 | 7.2:-16953422 | MS.gene04860:CDS |
| ATTGTTATTAGTGGTCCTTC+TGG | 0.288971 | 7.2:-16952744 | MS.gene04860:CDS |
| TTCTCAAGCTCTTCCATTGA+TGG | 0.297823 | 7.2:+16952004 | None:intergenic |
| GAGCATTACGCAGTCGCTTT+AGG | 0.302663 | 7.2:+16951862 | None:intergenic |
| CCATATCTGGTCATCTGATT+TGG | 0.313449 | 7.2:+16952981 | None:intergenic |
| CCATCTTTCTCCATATTTCT+CGG | 0.318499 | 7.2:+16952636 | None:intergenic |
| TCACACTCTTCTCAGTAAAA+TGG | 0.321682 | 7.2:+16952604 | None:intergenic |
| CCAAATCAGATGACCAGATA+TGG | 0.340254 | 7.2:-16952981 | MS.gene04860:CDS |
| AAGGAATTCCCTTCGATGTT+TGG | 0.340728 | 7.2:-16952687 | MS.gene04860:CDS |
| TCAAGTCCTCTTGTCCTTCC+AGG | 0.345102 | 7.2:+16951127 | None:intergenic |
| AACCCGTGCTCCGAGAAATA+TGG | 0.350022 | 7.2:-16952646 | MS.gene04860:CDS |
| CAGAAATTACTGGGACTTGA+TGG | 0.358399 | 7.2:-16951671 | MS.gene04860:CDS |
| GTTCCTTGTTGATGACCTTC+AGG | 0.367183 | 7.2:-16953438 | MS.gene04860:CDS |
| ATCATAAGCTGCATCTCTTC+TGG | 0.369022 | 7.2:-16951466 | MS.gene04860:CDS |
| TTCATTGGTGCAGAAATTAC+TGG | 0.369583 | 7.2:-16951681 | MS.gene04860:intron |
| TCTGTCCATGGTAATTTGTA+TGG | 0.376553 | 7.2:-16952540 | MS.gene04860:CDS |
| CTCGAATTTGCTTCTGTCCA+TGG | 0.403156 | 7.2:-16952552 | MS.gene04860:CDS |
| GAGAAACCTATTGTTATTAG+TGG | 0.405407 | 7.2:-16952753 | MS.gene04860:CDS |
| ATTCTTGATATTGATGTTCA+AGG | 0.419974 | 7.2:-16952082 | MS.gene04860:CDS |
| TTCAAGGAGCAAGATCTGTT+AGG | 0.421033 | 7.2:-16952066 | MS.gene04860:CDS |
| GTCTGTCATAACACTCTTCA+AGG | 0.422735 | 7.2:+16951778 | None:intergenic |
| TGAGGTTGTTGCTTGGAGTA+AGG | 0.423659 | 7.2:-16952793 | MS.gene04860:CDS |
| TGGACAGACAAAGATGAATA+TGG | 0.427437 | 7.2:+16952027 | None:intergenic |
| TGGAACCTTTCTTAAGAACT+AGG | 0.427990 | 7.2:+16953001 | None:intergenic |
| CTTTGTCTGTCCACCATCAA+TGG | 0.430337 | 7.2:-16952017 | MS.gene04860:CDS |
| GAAGGACCACTAATAACAAT+AGG | 0.431055 | 7.2:+16952747 | None:intergenic |
| ATTAGTGGTCCTTCTGGAGT+TGG | 0.435618 | 7.2:-16952738 | MS.gene04860:CDS |
| CTCCATATTTCTCGGAGCAC+GGG | 0.445632 | 7.2:+16952644 | None:intergenic |
| CGGATCCTAGTTCTTAAGAA+AGG | 0.451808 | 7.2:-16953006 | MS.gene04860:CDS |
| TCTCCATATTTCTCGGAGCA+CGG | 0.454075 | 7.2:+16952643 | None:intergenic |
| GGTTTGGTGCCTAGCACAGT+TGG | 0.455219 | 7.2:+16953069 | None:intergenic |
| TGGATGTTTCCTCACTGAAA+GGG | 0.456264 | 7.2:-16951156 | MS.gene04860:CDS |
| TTCAATTCAAGACCATTAAG+AGG | 0.459949 | 7.2:+16953410 | None:intergenic |
| CTTTCTTAAGAACTAGGATC+CGG | 0.474576 | 7.2:+16953007 | None:intergenic |
| TTGAGAAGCGCCTTCGTGAC+AGG | 0.480044 | 7.2:-16951988 | MS.gene04860:intron |
| TCCATTGCATGACAAGGGTT+TGG | 0.480420 | 7.2:+16953053 | None:intergenic |
| TCTTCTCAGTAAAATGGTAA+TGG | 0.482341 | 7.2:+16952610 | None:intergenic |
| TTGACCGTAGTCTTGGAGAA+TGG | 0.486043 | 7.2:-16953173 | MS.gene04860:intron |
| CTGTCCATGGTAATTTGTAT+GGG | 0.487223 | 7.2:-16952539 | MS.gene04860:CDS |
| CTTGTTGATGACCTTCAGGA+TGG | 0.487351 | 7.2:-16953434 | MS.gene04860:CDS |
| TCACCTCTAGAAACCATATC+TGG | 0.487464 | 7.2:+16952968 | None:intergenic |
| CGAGAAATATGGAGAAAGAT+GGG | 0.489516 | 7.2:-16952635 | MS.gene04860:CDS |
| CCGAGAAATATGGAGAAAGA+TGG | 0.490569 | 7.2:-16952636 | MS.gene04860:CDS |
| GTTTGACAGTATGTCACTGT+TGG | 0.492792 | 7.2:-16953234 | MS.gene04860:intron |
| ATGGAGAAAGAGATCAAAAG+TGG | 0.501117 | 7.2:-16952582 | MS.gene04860:CDS |
| GAGGTTGTTGCTTGGAGTAA+GGG | 0.507302 | 7.2:-16952792 | MS.gene04860:CDS |
| AAAGCGACTGCGTAATGCTC+AGG | 0.512562 | 7.2:-16951859 | MS.gene04860:CDS |
| GGTCCTTCTGGAGTTGGTAA+AGG | 0.512799 | 7.2:-16952732 | MS.gene04860:CDS |
| GTTTGGTGCCTAGCACAGTT+GGG | 0.517021 | 7.2:+16953070 | None:intergenic |
| ACTAATATCAATGCTCATGA+AGG | 0.517312 | 7.2:-16952706 | MS.gene04860:CDS |
| GCTTGGAGTAAGGGTGTGAT+AGG | 0.517396 | 7.2:-16952783 | MS.gene04860:CDS |
| TCAAGGAGCAAGATCTGTTA+GGG | 0.522205 | 7.2:-16952065 | MS.gene04860:CDS |
| TTAGACACTGAATGATCTGT+TGG | 0.523783 | 7.2:+16951505 | None:intergenic |
| GTCACTGTTGGAGCTGATGA+TGG | 0.527989 | 7.2:-16953222 | MS.gene04860:CDS |
| TTGGATGTTTCCTCACTGAA+AGG | 0.528344 | 7.2:-16951157 | MS.gene04860:CDS |
| AGAGTGTTATGACAGACTTA+AGG | 0.531515 | 7.2:-16951772 | MS.gene04860:intron |
| GTTGAAGTGGTAGCTGATGC+AGG | 0.538538 | 7.2:-16952501 | MS.gene04860:CDS |
| TGGGGACTGAGGTTGTTGCT+TGG | 0.545642 | 7.2:-16952800 | MS.gene04860:CDS |
| GTTGGTAGATTAATCTCTCT+AGG | 0.546143 | 7.2:+16951523 | None:intergenic |
| TGCAAAACAACTACTGTCGT+TGG | 0.554632 | 7.2:-16953377 | MS.gene04860:CDS |
| TTGACTTGACAGGATCATGT+TGG | 0.561118 | 7.2:-16951176 | MS.gene04860:intron |
| TCAAGCTCTTCCATTGATGG+TGG | 0.563601 | 7.2:+16952007 | None:intergenic |
| GGATGTTTCCTCACTGAAAG+GGG | 0.566805 | 7.2:-16951155 | MS.gene04860:CDS |
| AGGGTTCACCCAACTGTGCT+AGG | 0.568022 | 7.2:-16953078 | MS.gene04860:CDS |
| CATCTCTTCTGGACTTGACA+AGG | 0.573859 | 7.2:-16951455 | MS.gene04860:CDS |
| GGTGCACCTGGAAGGACAAG+AGG | 0.574956 | 7.2:-16951133 | MS.gene04860:CDS |
| AATGGTCTTGAATTGAACAA+TGG | 0.577419 | 7.2:-16953404 | MS.gene04860:CDS |
| TCATTGGTGCAGAAATTACT+GGG | 0.585295 | 7.2:-16951680 | MS.gene04860:intron |
| ACCAAACCCTTGTCATGCAA+TGG | 0.601097 | 7.2:-16953054 | MS.gene04860:CDS |
| AAACAGAGGGACTGAGACTG+AGG | 0.601275 | 7.2:-16951892 | MS.gene04860:intron |
| CAGTGTTGAGGCTGTTGAAG+TGG | 0.604055 | 7.2:-16952514 | MS.gene04860:CDS |
| CATTAAGAGGTCCATCCTGA+AGG | 0.605764 | 7.2:+16953423 | None:intergenic |
| TGAGTGTCCATTGCATGACA+AGG | 0.606716 | 7.2:+16953047 | None:intergenic |
| CTGACCATTCTCCAAGACTA+CGG | 0.617954 | 7.2:+16953169 | None:intergenic |
| GATGTTTCCTCACTGAAAGG+GGG | 0.625893 | 7.2:-16951154 | MS.gene04860:CDS |
| CATCCTGAAGGTCATCAACA+AGG | 0.626232 | 7.2:+16953435 | None:intergenic |
| CACTTCAACAGCCTCAACAC+TGG | 0.628025 | 7.2:+16952515 | None:intergenic |
| GCTCAGGCTGAGATTGAGCA+AGG | 0.631772 | 7.2:-16951843 | MS.gene04860:CDS |
| GTTCCTTTACCAACTCCAGA+AGG | 0.638608 | 7.2:+16952729 | None:intergenic |
| TGACCAGATATGGTTTCTAG+AGG | 0.640137 | 7.2:-16952971 | MS.gene04860:intron |
| GAGTGTCCATTGCATGACAA+GGG | 0.640152 | 7.2:+16953048 | None:intergenic |
| CTGAATATGTTAGACAGCAG+AGG | 0.642982 | 7.2:-16952830 | MS.gene04860:CDS |
| CCACTACTCACCTGTCACGA+AGG | 0.647896 | 7.2:+16951978 | None:intergenic |
| TGGTCCCATACAAATTACCA+TGG | 0.653492 | 7.2:+16952535 | None:intergenic |
| AGGTCATCAACAAGGAACGC+TGG | 0.660018 | 7.2:+16953443 | None:intergenic |
| GAGAAATATGGAGAAAGATG+GGG | 0.669595 | 7.2:-16952634 | MS.gene04860:CDS |
| TTTGTATGGGACCAGTGTTG+AGG | 0.692634 | 7.2:-16952526 | MS.gene04860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTCTTACCTAATT+TGG | + | chr7.2:16952914-16952933 | None:intergenic | 15.0% |
| !! | AAAAAATTCTTACCTAATTT+GGG | + | chr7.2:16952913-16952932 | None:intergenic | 15.0% |
| !! | TTGTTAATTTATGAATCAAA+TGG | + | chr7.2:16953194-16953213 | None:intergenic | 15.0% |
| !!! | ATTAAGTTAAGACTAAATTT+TGG | + | chr7.2:16952623-16952642 | None:intergenic | 15.0% |
| !!! | TAAATGCTAATTTGTTTTAT+TGG | - | chr7.2:16951676-16951695 | MS.gene04860:intron | 15.0% |
| !!! | TTAATTTTTAAATATTCCAG+AGG | - | chr7.2:16952434-16952453 | MS.gene04860:intron | 15.0% |
| !! | ATATTAGAACATTAAATCGT+GGG | - | chr7.2:16952127-16952146 | MS.gene04860:intron | 20.0% |
| !! | ATTAAGGAATTTCAATTTCA+GGG | + | chr7.2:16953231-16953250 | None:intergenic | 20.0% |
| !! | CAAAAGAACTAATATGATTA+AGG | + | chr7.2:16953247-16953266 | None:intergenic | 20.0% |
| !! | GAAATTAACAAAATTCCAAA+AGG | + | chr7.2:16953275-16953294 | None:intergenic | 20.0% |
| !! | TGCTAAAACAAGAAAATTAT+AGG | + | chr7.2:16953319-16953338 | None:intergenic | 20.0% |
| !!! | AATCAATTCTAAAAACTTCA+AGG | + | chr7.2:16952256-16952275 | None:intergenic | 20.0% |
| !!! | AATTCATTTTATTTGAAGCT+TGG | - | chr7.2:16952104-16952123 | MS.gene04860:intron | 20.0% |
| !!! | CTTAATCATATTAGTTCTTT+TGG | - | chr7.2:16953245-16953264 | MS.gene04860:intron | 20.0% |
| !!! | TAATTTGTTTTATTGGTACT+AGG | - | chr7.2:16951683-16951702 | MS.gene04860:intron | 20.0% |
| !!! | TTTGGAATTTTGTTAATTTC+AGG | - | chr7.2:16953275-16953294 | MS.gene04860:intron | 20.0% |
| !!! | TTTGTTACTGATATTCATTT+TGG | - | chr7.2:16951436-16951455 | MS.gene04860:intron | 20.0% |
| !!! | TTTTTGTTTTAGGCATAAAT+TGG | + | chr7.2:16951274-16951293 | None:intergenic | 20.0% |
| ! | ATTCTTGATATTGATGTTCA+AGG | - | chr7.2:16952460-16952479 | MS.gene04860:intron | 25.0% |
| ! | CTGAAAATTTACATTCAGTT+TGG | + | chr7.2:16952943-16952962 | None:intergenic | 25.0% |
| ! | GATATTAGAACATTAAATCG+TGG | - | chr7.2:16952126-16952145 | MS.gene04860:intron | 25.0% |
| ! | GATTAAGGAATTTCAATTTC+AGG | + | chr7.2:16953232-16953251 | None:intergenic | 25.0% |
| ! | TACGATTTAAGAAACGAAAT+TGG | + | chr7.2:16953162-16953181 | None:intergenic | 25.0% |
| ! | TTTATGCCTAAAACAAAAAC+CGG | - | chr7.2:16951275-16951294 | MS.gene04860:intron | 25.0% |
| !!! | ACTTAATGTTTTGAAAACAG+AGG | - | chr7.2:16952636-16952655 | MS.gene04860:CDS | 25.0% |
| !!! | CTTAATGTTTTGAAAACAGA+GGG | - | chr7.2:16952637-16952656 | MS.gene04860:CDS | 25.0% |
| !!! | TTTCTTGTTTTAGCACTATA+GGG | - | chr7.2:16953324-16953343 | MS.gene04860:intron | 25.0% |
| !!! | TTTTCTTGTTTTAGCACTAT+AGG | - | chr7.2:16953323-16953342 | MS.gene04860:intron | 25.0% |
| ACTAATATCAATGCTCATGA+AGG | - | chr7.2:16951836-16951855 | MS.gene04860:CDS | 30.0% | |
| CATGTTAGTATTTACCTTCA+TGG | + | chr7.2:16952975-16952994 | None:intergenic | 30.0% | |
| CCAATGAACATACGTATATT+AGG | + | chr7.2:16952849-16952868 | None:intergenic | 30.0% | |
| CCTAATATACGTATGTTCAT+TGG | - | chr7.2:16952846-16952865 | MS.gene04860:intron | 30.0% | |
| GGTAAGAAATTGTCGTAATT+CGG | + | chr7.2:16952407-16952426 | None:intergenic | 30.0% | |
| GTCAAAAATTTGAACGTCAA+TGG | + | chr7.2:16951354-16951373 | None:intergenic | 30.0% | |
| GTTTCTTAAATCGTAGACAT+TGG | - | chr7.2:16953167-16953186 | MS.gene04860:intron | 30.0% | |
| TCTTCTCAGTAAAATGGTAA+TGG | + | chr7.2:16951935-16951954 | None:intergenic | 30.0% | |
| TGTCGAAATCTATGGTAATT+TGG | + | chr7.2:16952176-16952195 | None:intergenic | 30.0% | |
| TTATGCCTAAAACAAAAACC+GGG | - | chr7.2:16951276-16951295 | MS.gene04860:intron | 30.0% | |
| TTCAATTCAAGACCATTAAG+AGG | + | chr7.2:16951135-16951154 | None:intergenic | 30.0% | |
| TTCAGTTTATAAAGCCATGA+AGG | - | chr7.2:16952958-16952977 | MS.gene04860:intron | 30.0% | |
| ! | AATGGTCTTGAATTGAACAA+TGG | - | chr7.2:16951138-16951157 | MS.gene04860:CDS | 30.0% |
| ! | GAGAAACCTATTGTTATTAG+TGG | - | chr7.2:16951789-16951808 | MS.gene04860:CDS | 30.0% |
| ! | GATATTCATTTTGGATTGCA+GGG | - | chr7.2:16951445-16951464 | MS.gene04860:CDS | 30.0% |
| ! | TGATATTCATTTTGGATTGC+AGG | - | chr7.2:16951444-16951463 | MS.gene04860:CDS | 30.0% |
| !! | AGGATGATAAGAACTTTTTC+AGG | + | chr7.2:16952829-16952848 | None:intergenic | 30.0% |
| !!! | TAAGAACTTTTTCAGGATTG+AGG | + | chr7.2:16952822-16952841 | None:intergenic | 30.0% |
| !!! | TTTGTTTTATTGGTACTAGG+TGG | - | chr7.2:16951686-16951705 | MS.gene04860:intron | 30.0% |
| AATCCACAGTTCAGCAATAA+TGG | + | chr7.2:16952335-16952354 | None:intergenic | 35.0% | |
| ACAGAAAAACCAAACATCGA+AGG | + | chr7.2:16951867-16951886 | None:intergenic | 35.0% | |
| AGACAGCAGAGGAAAAAATT+GGG | - | chr7.2:16951723-16951742 | MS.gene04860:intron | 35.0% | |
| ATGGAGAAAGAGATCAAAAG+TGG | - | chr7.2:16951960-16951979 | MS.gene04860:intron | 35.0% | |
| CAGAAAAACCAAACATCGAA+GGG | + | chr7.2:16951866-16951885 | None:intergenic | 35.0% | |
| CCATCTTTCTCCATATTTCT+CGG | + | chr7.2:16951909-16951928 | None:intergenic | 35.0% | |
| CGAGAAATATGGAGAAAGAT+GGG | - | chr7.2:16951907-16951926 | MS.gene04860:intron | 35.0% | |
| CTTTCTTAAGAACTAGGATC+CGG | + | chr7.2:16951538-16951557 | None:intergenic | 35.0% | |
| GAAGGACCACTAATAACAAT+AGG | + | chr7.2:16951798-16951817 | None:intergenic | 35.0% | |
| GAGAAATATGGAGAAAGATG+GGG | - | chr7.2:16951908-16951927 | MS.gene04860:intron | 35.0% | |
| GTGACATACTGTCAAACAAA+CGG | + | chr7.2:16951305-16951324 | None:intergenic | 35.0% | |
| TAGACAGCAGAGGAAAAAAT+TGG | - | chr7.2:16951722-16951741 | MS.gene04860:intron | 35.0% | |
| TCACACTCTTCTCAGTAAAA+TGG | + | chr7.2:16951941-16951960 | None:intergenic | 35.0% | |
| TCATTGGTGCAGAAATTACT+GGG | - | chr7.2:16952862-16952881 | MS.gene04860:intron | 35.0% | |
| TCTATTGATCAGCTTAGCTA+AGG | - | chr7.2:16953454-16953473 | MS.gene04860:CDS | 35.0% | |
| TGGAACCTTTCTTAAGAACT+AGG | + | chr7.2:16951544-16951563 | None:intergenic | 35.0% | |
| TGGACAGACAAAGATGAATA+TGG | + | chr7.2:16952518-16952537 | None:intergenic | 35.0% | |
| TTAGACACTGAATGATCTGT+TGG | + | chr7.2:16953040-16953059 | None:intergenic | 35.0% | |
| TTCATTCTGAGTTCAGCTAA+AGG | - | chr7.2:16952209-16952228 | MS.gene04860:intron | 35.0% | |
| TTCATTGGTGCAGAAATTAC+TGG | - | chr7.2:16952861-16952880 | MS.gene04860:intron | 35.0% | |
| ! | AGAGTGTTATGACAGACTTA+AGG | - | chr7.2:16952770-16952789 | MS.gene04860:CDS | 35.0% |
| ! | AGTTCTTTTGGATCACCTTT+TGG | - | chr7.2:16953257-16953276 | MS.gene04860:intron | 35.0% |
| ! | ATTGTTATTAGTGGTCCTTC+TGG | - | chr7.2:16951798-16951817 | MS.gene04860:CDS | 35.0% |
| ! | CAAATTTTTGACCGTAGTCT+TGG | - | chr7.2:16951362-16951381 | MS.gene04860:intron | 35.0% |
| ! | CTGTCCATGGTAATTTGTAT+GGG | - | chr7.2:16952003-16952022 | MS.gene04860:CDS | 35.0% |
| ! | GTTGGTAGATTAATCTCTCT+AGG | + | chr7.2:16953022-16953041 | None:intergenic | 35.0% |
| ! | TCTGTCCATGGTAATTTGTA+TGG | - | chr7.2:16952002-16952021 | MS.gene04860:CDS | 35.0% |
| !! | GATCTTGTATTTGACTTGAC+AGG | - | chr7.2:16953356-16953375 | MS.gene04860:intron | 35.0% |
| !! | TTTTACTGAGAAGAGTGTGA+TGG | - | chr7.2:16951941-16951960 | MS.gene04860:intron | 35.0% |
| !!! | GGACTTGATTTTCAAGTCAT+AGG | - | chr7.2:16953430-16953449 | MS.gene04860:CDS | 35.0% |
| !!! | TGTTTTAGCACTATAGGGTA+AGG | - | chr7.2:16953329-16953348 | MS.gene04860:intron | 35.0% |
| AACCACAACAACGTAATGAG+AGG | + | chr7.2:16952384-16952403 | None:intergenic | 40.0% | |
| AACCTCTCATTACGTTGTTG+TGG | - | chr7.2:16952379-16952398 | MS.gene04860:intron | 40.0% | |
| AAGGAATTCCCTTCGATGTT+TGG | - | chr7.2:16951855-16951874 | MS.gene04860:CDS | 40.0% | |
| ACATACTGTCAAACAAACGG+AGG | + | chr7.2:16951302-16951321 | None:intergenic | 40.0% | |
| ACATTAAATCGTGGGTACAC+TGG | - | chr7.2:16952135-16952154 | MS.gene04860:intron | 40.0% | |
| ATCATAAGCTGCATCTCTTC+TGG | - | chr7.2:16953076-16953095 | MS.gene04860:CDS | 40.0% | |
| CAATATCAAGAATGCACCTC+TGG | + | chr7.2:16952453-16952472 | None:intergenic | 40.0% | |
| CAGAAATTACTGGGACTTGA+TGG | - | chr7.2:16952871-16952890 | MS.gene04860:intron | 40.0% | |
| CCAAATCAGATGACCAGATA+TGG | - | chr7.2:16951561-16951580 | MS.gene04860:intron | 40.0% | |
| CCATATCTGGTCATCTGATT+TGG | + | chr7.2:16951564-16951583 | None:intergenic | 40.0% | |
| CCGAGAAATATGGAGAAAGA+TGG | - | chr7.2:16951906-16951925 | MS.gene04860:intron | 40.0% | |
| CCTATGACTTCGAGAATGTA+AGG | - | chr7.2:16952290-16952309 | MS.gene04860:intron | 40.0% | |
| CCTTACATTCTCGAAGTCAT+AGG | + | chr7.2:16952293-16952312 | None:intergenic | 40.0% | |
| CTGAATATGTTAGACAGCAG+AGG | - | chr7.2:16951712-16951731 | MS.gene04860:intron | 40.0% | |
| GACAGCAGAGGAAAAAATTG+GGG | - | chr7.2:16951724-16951743 | MS.gene04860:intron | 40.0% | |
| GCAAGACTTGTCGAAATCTA+TGG | + | chr7.2:16952184-16952203 | None:intergenic | 40.0% | |
| GCCTTACAAAAACAGCTATG+AGG | + | chr7.2:16951414-16951433 | None:intergenic | 40.0% | |
| GTCTGTCATAACACTCTTCA+AGG | + | chr7.2:16952767-16952786 | None:intergenic | 40.0% | |
| GTTTGACAGTATGTCACTGT+TGG | - | chr7.2:16951308-16951327 | MS.gene04860:intron | 40.0% | |
| TACTGTCGTTGGCGAAAAAA+CGG | - | chr7.2:16951176-16951195 | MS.gene04860:intron | 40.0% | |
| TCAAGGAGCAAGATCTGTTA+GGG | - | chr7.2:16952477-16952496 | MS.gene04860:intron | 40.0% | |
| TGCAAAACAACTACTGTCGT+TGG | - | chr7.2:16951165-16951184 | MS.gene04860:CDS | 40.0% | |
| TGGATGTTTCCTCACTGAAA+GGG | - | chr7.2:16953386-16953405 | MS.gene04860:CDS | 40.0% | |
| TGGTCCCATACAAATTACCA+TGG | + | chr7.2:16952010-16952029 | None:intergenic | 40.0% | |
| TTCAAGGAGCAAGATCTGTT+AGG | - | chr7.2:16952476-16952495 | MS.gene04860:intron | 40.0% | |
| TTCTCAAGCTCTTCCATTGA+TGG | + | chr7.2:16952541-16952560 | None:intergenic | 40.0% | |
| TTGGATGTTTCCTCACTGAA+AGG | - | chr7.2:16953385-16953404 | MS.gene04860:CDS | 40.0% | |
| ! | CGGATCCTAGTTCTTAAGAA+AGG | - | chr7.2:16951536-16951555 | MS.gene04860:intron | 40.0% |
| ! | GAGGAAGTTTTTGCTTTAGC+AGG | + | chr7.2:16952803-16952822 | None:intergenic | 40.0% |
| ! | GTGGATTATAGCGTTGTTAG+AGG | - | chr7.2:16952348-16952367 | MS.gene04860:intron | 40.0% |
| ! | TCACCTCTAGAAACCATATC+TGG | + | chr7.2:16951577-16951596 | None:intergenic | 40.0% |
| ! | TGACCAGATATGGTTTCTAG+AGG | - | chr7.2:16951571-16951590 | MS.gene04860:intron | 40.0% |
| ! | TTGACTTGACAGGATCATGT+TGG | - | chr7.2:16953366-16953385 | MS.gene04860:intron | 40.0% |
| !!! | GCCTCATAGCTGTTTTTGTA+AGG | - | chr7.2:16951410-16951429 | MS.gene04860:intron | 40.0% |
| ACCAAACCCTTGTCATGCAA+TGG | - | chr7.2:16951488-16951507 | MS.gene04860:CDS | 45.0% | |
| CATCCTGAAGGTCATCAACA+AGG | + | chr7.2:16951110-16951129 | None:intergenic | 45.0% | |
| CATCTCTTCTGGACTTGACA+AGG | - | chr7.2:16953087-16953106 | MS.gene04860:intron | 45.0% | |
| CATTAAGAGGTCCATCCTGA+AGG | + | chr7.2:16951122-16951141 | None:intergenic | 45.0% | |
| CTGACCATTCTCCAAGACTA+CGG | + | chr7.2:16951376-16951395 | None:intergenic | 45.0% | |
| CTTCAGGATGGACCTCTTAA+TGG | - | chr7.2:16951120-16951139 | MS.gene04860:CDS | 45.0% | |
| CTTTGTCTGTCCACCATCAA+TGG | - | chr7.2:16952525-16952544 | MS.gene04860:CDS | 45.0% | |
| GAGCCATTATTGCTGAACTG+TGG | - | chr7.2:16952329-16952348 | MS.gene04860:intron | 45.0% | |
| GAGGAAAAAATTGGGGACTG+AGG | - | chr7.2:16951731-16951750 | MS.gene04860:intron | 45.0% | |
| GAGTGTCCATTGCATGACAA+GGG | + | chr7.2:16951497-16951516 | None:intergenic | 45.0% | |
| GATGTTTCCTCACTGAAAGG+GGG | - | chr7.2:16953388-16953407 | MS.gene04860:CDS | 45.0% | |
| GGATGTTTCCTCACTGAAAG+GGG | - | chr7.2:16953387-16953406 | MS.gene04860:CDS | 45.0% | |
| GTTCCTTTACCAACTCCAGA+AGG | + | chr7.2:16951816-16951835 | None:intergenic | 45.0% | |
| GTTGCAACTGCACCCAAATT+AGG | - | chr7.2:16952898-16952917 | MS.gene04860:intron | 45.0% | |
| TCAAGCTCTTCCATTGATGG+TGG | + | chr7.2:16952538-16952557 | None:intergenic | 45.0% | |
| TCCATTGCATGACAAGGGTT+TGG | + | chr7.2:16951492-16951511 | None:intergenic | 45.0% | |
| TCTCCATATTTCTCGGAGCA+CGG | + | chr7.2:16951902-16951921 | None:intergenic | 45.0% | |
| TGAGTGTCCATTGCATGACA+AGG | + | chr7.2:16951498-16951517 | None:intergenic | 45.0% | |
| TTTGTATGGGACCAGTGTTG+AGG | - | chr7.2:16952016-16952035 | MS.gene04860:CDS | 45.0% | |
| ! | CTCGAATTTGCTTCTGTCCA+TGG | - | chr7.2:16951990-16952009 | MS.gene04860:CDS | 45.0% |
| ! | GAGGTTGTTGCTTGGAGTAA+GGG | - | chr7.2:16951750-16951769 | MS.gene04860:intron | 45.0% |
| ! | GATCCGGTTTTCGAAAAGCA+CGG | + | chr7.2:16951522-16951541 | None:intergenic | 45.0% |
| ! | TGAGGTTGTTGCTTGGAGTA+AGG | - | chr7.2:16951749-16951768 | MS.gene04860:intron | 45.0% |
| ! | TTAATCTCTCTAGGTGCTGC+TGG | + | chr7.2:16953013-16953032 | None:intergenic | 45.0% |
| ! | TTGACCGTAGTCTTGGAGAA+TGG | - | chr7.2:16951369-16951388 | MS.gene04860:intron | 45.0% |
| !! | ATTAGTGGTCCTTCTGGAGT+TGG | - | chr7.2:16951804-16951823 | MS.gene04860:CDS | 45.0% |
| !! | CTTGTTGATGACCTTCAGGA+TGG | - | chr7.2:16951108-16951127 | MS.gene04860:CDS | 45.0% |
| !! | GTTCCTTGTTGATGACCTTC+AGG | - | chr7.2:16951104-16951123 | MS.gene04860:CDS | 45.0% |
| !! | TATTTAAAAATTAAAATATC+AGG | + | chr7.2:16952428-16952447 | None:intergenic | 5.0% |
| AAACAGAGGGACTGAGACTG+AGG | - | chr7.2:16952650-16952669 | MS.gene04860:CDS | 50.0% | |
| AAAGCGACTGCGTAATGCTC+AGG | - | chr7.2:16952683-16952702 | MS.gene04860:CDS | 50.0% | |
| AACCCGTGCTCCGAGAAATA+TGG | - | chr7.2:16951896-16951915 | MS.gene04860:intron | 50.0% | |
| AGGTCATCAACAAGGAACGC+TGG | + | chr7.2:16951102-16951121 | None:intergenic | 50.0% | |
| CACTTCAACAGCCTCAACAC+TGG | + | chr7.2:16952030-16952049 | None:intergenic | 50.0% | |
| CTCCATATTTCTCGGAGCAC+GGG | + | chr7.2:16951901-16951920 | None:intergenic | 50.0% | |
| GTCACTGTTGGAGCTGATGA+TGG | - | chr7.2:16951320-16951339 | MS.gene04860:intron | 50.0% | |
| GTTGAAGTGGTAGCTGATGC+AGG | - | chr7.2:16952041-16952060 | MS.gene04860:CDS | 50.0% | |
| TCAAGTCCTCTTGTCCTTCC+AGG | + | chr7.2:16953418-16953437 | None:intergenic | 50.0% | |
| ! | CAGCCGTGCTTTTCGAAAAC+CGG | - | chr7.2:16951516-16951535 | MS.gene04860:CDS | 50.0% |
| ! | CAGTGTTGAGGCTGTTGAAG+TGG | - | chr7.2:16952028-16952047 | MS.gene04860:CDS | 50.0% |
| ! | GAGCATTACGCAGTCGCTTT+AGG | + | chr7.2:16952683-16952702 | None:intergenic | 50.0% |
| ! | GCTTGGAGTAAGGGTGTGAT+AGG | - | chr7.2:16951759-16951778 | MS.gene04860:intron | 50.0% |
| !! | GGTCCTTCTGGAGTTGGTAA+AGG | - | chr7.2:16951810-16951829 | MS.gene04860:CDS | 50.0% |
| !! | GTTTGGTGCCTAGCACAGTT+GGG | + | chr7.2:16951475-16951494 | None:intergenic | 50.0% |
| !!! | GGAGGCCCGGTTTTTGTTTT+AGG | + | chr7.2:16951284-16951303 | None:intergenic | 50.0% |
| AGGGTTCACCCAACTGTGCT+AGG | - | chr7.2:16951464-16951483 | MS.gene04860:CDS | 55.0% | |
| ATCGTGGGTACACTGGTGTG+TGG | - | chr7.2:16952142-16952161 | MS.gene04860:intron | 55.0% | |
| CCACTACTCACCTGTCACGA+AGG | + | chr7.2:16952567-16952586 | None:intergenic | 55.0% | |
| CCTTCGTGACAGGTGAGTAG+TGG | - | chr7.2:16952564-16952583 | MS.gene04860:CDS | 55.0% | |
| CTGTCAAACAAACGGAGGCC+CGG | + | chr7.2:16951297-16951316 | None:intergenic | 55.0% | |
| GCTCAGGCTGAGATTGAGCA+AGG | - | chr7.2:16952699-16952718 | MS.gene04860:CDS | 55.0% | |
| TGGGGACTGAGGTTGTTGCT+TGG | - | chr7.2:16951742-16951761 | MS.gene04860:intron | 55.0% | |
| !! | GGTTTGGTGCCTAGCACAGT+TGG | + | chr7.2:16951476-16951495 | None:intergenic | 55.0% |
| !! | TTGAGAAGCGCCTTCGTGAC+AGG | - | chr7.2:16952554-16952573 | MS.gene04860:CDS | 55.0% |
| AGGTGCACCCCCTTTCAGTG+AGG | + | chr7.2:16953398-16953417 | None:intergenic | 60.0% | |
| GGTGCACCTGGAAGGACAAG+AGG | - | chr7.2:16953409-16953428 | MS.gene04860:CDS | 60.0% | |
| ! | TCACTGAAAGGGGGTGCACC+TGG | - | chr7.2:16953397-16953416 | MS.gene04860:CDS | 60.0% |
| ! | TGAAAGGGGGTGCACCTGGA+AGG | - | chr7.2:16953401-16953420 | MS.gene04860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 16951090 | 16953474 | 16951090 | ID=MS.gene04860 |
| chr7.2 | mRNA | 16951090 | 16953474 | 16951090 | ID=MS.gene04860.t1;Parent=MS.gene04860 |
| chr7.2 | exon | 16953367 | 16953474 | 16953367 | ID=MS.gene04860.t1.exon1;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16953367 | 16953474 | 16953367 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16953174 | 16953247 | 16953174 | ID=MS.gene04860.t1.exon2;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16953174 | 16953247 | 16953174 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16952972 | 16953098 | 16952972 | ID=MS.gene04860.t1.exon3;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16952972 | 16953098 | 16952972 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16952497 | 16952859 | 16952497 | ID=MS.gene04860.t1.exon4;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16952497 | 16952859 | 16952497 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16951989 | 16952110 | 16951989 | ID=MS.gene04860.t1.exon5;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16951989 | 16952110 | 16951989 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16951773 | 16951908 | 16951773 | ID=MS.gene04860.t1.exon6;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16951773 | 16951908 | 16951773 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16951645 | 16951690 | 16951645 | ID=MS.gene04860.t1.exon7;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16951645 | 16951690 | 16951645 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16951442 | 16951550 | 16951442 | ID=MS.gene04860.t1.exon8;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16951442 | 16951550 | 16951442 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| chr7.2 | exon | 16951090 | 16951186 | 16951090 | ID=MS.gene04860.t1.exon9;Parent=MS.gene04860.t1 |
| chr7.2 | CDS | 16951090 | 16951186 | 16951090 | ID=cds.MS.gene04860.t1;Parent=MS.gene04860.t1 |
| Gene Sequence |
| Protein sequence |
