AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene04879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04879.t1 MTR_7g092020 98.056 360 3 1 1 356 2 361 0.0 719
MS.gene04879.t1 MTR_7g092020 97.784 361 3 2 1 356 2 362 0.0 716
MS.gene04879.t1 MTR_7g092020 99.003 301 3 0 56 356 13 313 0.0 617
MS.gene04879.t1 MTR_7g092020 98.675 302 3 1 56 356 13 314 0.0 612
MS.gene04879.t1 MTR_0374s0010 82.000 100 18 0 221 320 1 100 9.13e-54 172
MS.gene04879.t1 MTR_2g021320 36.747 166 100 3 131 295 91 252 2.19e-24 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene04879.t1 AT3G57550 67.787 357 107 4 1 349 2 358 1.59e-167 473
MS.gene04879.t1 AT3G57550 67.787 357 106 5 1 349 2 357 1.56e-166 470
MS.gene04879.t1 AT3G57550 67.787 357 106 5 1 349 2 357 1.56e-166 470
MS.gene04879.t1 AT2G41880 68.091 351 103 5 1 343 2 351 1.15e-161 457
MS.gene04879.t1 AT2G41880 68.091 351 103 5 1 343 2 351 1.15e-161 457
MS.gene04879.t1 AT2G41880 68.091 351 103 5 1 343 2 351 3.02e-161 457
MS.gene04879.t1 AT2G41880 68.091 351 103 5 1 343 2 351 3.02e-161 457
MS.gene04879.t1 AT2G41880 70.186 322 88 4 1 314 2 323 1.02e-154 438
MS.gene04879.t1 AT2G41880 62.895 380 103 6 1 343 2 380 2.92e-154 440
MS.gene04879.t1 AT2G41880 70.064 314 86 4 1 306 2 315 1.65e-150 427
MS.gene04879.t1 AT2G41880 70.064 314 86 4 1 306 2 315 2.62e-150 427
MS.gene04879.t1 AT2G41880 70.064 314 86 4 1 306 2 315 2.62e-150 427
MS.gene04879.t1 AT3G06200 32.418 182 116 4 131 309 91 268 1.01e-20 91.3

Find 79 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGCAACTGCACCCAAATT+AGG 0.227947 7.2:-17025210 MS.gene04879:intron
CTTCAGGATGGACCTCTTAA+TGG 0.276233 7.2:-17026990 MS.gene04879:CDS
ATTGTTATTAGTGGTCCTTC+TGG 0.288971 7.2:-17026310 MS.gene04879:CDS
TTCTCAAGCTCTTCCATTGA+TGG 0.297823 7.2:+17025570 None:intergenic
GAGCATTACGCAGTCGCTTT+AGG 0.302663 7.2:+17025428 None:intergenic
CCATATCTGGTCATCTGATT+TGG 0.313449 7.2:+17026548 None:intergenic
CCATCTTTCTCCATATTTCT+CGG 0.318499 7.2:+17026202 None:intergenic
TCACACTCTTCTCAGTAAAA+TGG 0.321682 7.2:+17026170 None:intergenic
CCAAATCAGATGACCAGATA+TGG 0.340254 7.2:-17026548 MS.gene04879:CDS
AAGGAATTCCCTTCGATGTT+TGG 0.340728 7.2:-17026253 MS.gene04879:CDS
AACCCGTGCTCCGAGAAATA+TGG 0.350022 7.2:-17026212 MS.gene04879:CDS
CAGAAATTACTGGGACTTGA+TGG 0.358399 7.2:-17025237 MS.gene04879:CDS
GTTCCTTGTTGATGACCTTC+AGG 0.367183 7.2:-17027006 MS.gene04879:CDS
ATCATAAGCTGCATCTCTTC+TGG 0.369022 7.2:-17025032 MS.gene04879:CDS
TTCATTGGTGCAGAAATTAC+TGG 0.369583 7.2:-17025247 MS.gene04879:intron
TCTGTCCATGGTAATTTGTA+TGG 0.376553 7.2:-17026106 MS.gene04879:CDS
CTCGAATTTGCTTCTGTCCA+TGG 0.403156 7.2:-17026118 MS.gene04879:CDS
GAGAAACCTATTGTTATTAG+TGG 0.405407 7.2:-17026319 MS.gene04879:CDS
ATTCTTGATATTGATGTTCA+AGG 0.419974 7.2:-17025648 MS.gene04879:CDS
TTCAAGGAGCAAGATCTGTT+AGG 0.421033 7.2:-17025632 MS.gene04879:CDS
GTCTGTCATAACACTCTTCA+AGG 0.422735 7.2:+17025344 None:intergenic
TGAGGTTGTTGCTTGGAGTA+AGG 0.423659 7.2:-17026359 MS.gene04879:CDS
TGGACAGACAAAGATGAATA+TGG 0.427437 7.2:+17025593 None:intergenic
TGGAACCTTTCTTAAGAACT+AGG 0.427990 7.2:+17026568 None:intergenic
CTTTGTCTGTCCACCATCAA+TGG 0.430337 7.2:-17025583 MS.gene04879:CDS
GAAGGACCACTAATAACAAT+AGG 0.431055 7.2:+17026313 None:intergenic
ATTAGTGGTCCTTCTGGAGT+TGG 0.435618 7.2:-17026304 MS.gene04879:CDS
CTCCATATTTCTCGGAGCAC+GGG 0.445632 7.2:+17026210 None:intergenic
CGGATCCTAGTTCTTAAGAA+AGG 0.451808 7.2:-17026573 MS.gene04879:CDS
TCTCCATATTTCTCGGAGCA+CGG 0.454075 7.2:+17026209 None:intergenic
GGTTTGGTGCCTAGCACAGT+TGG 0.455219 7.2:+17026636 None:intergenic
TTCAATTCAAGACCATTAAG+AGG 0.459949 7.2:+17026978 None:intergenic
CTTTCTTAAGAACTAGGATC+CGG 0.474576 7.2:+17026574 None:intergenic
TTGAGAAGCGCCTTCGTGAC+AGG 0.480044 7.2:-17025554 MS.gene04879:intron
TCCATTGCATGACAAGGGTT+TGG 0.480420 7.2:+17026620 None:intergenic
TCTTCTCAGTAAAATGGTAA+TGG 0.482341 7.2:+17026176 None:intergenic
CTGTCCATGGTAATTTGTAT+GGG 0.487223 7.2:-17026105 MS.gene04879:CDS
CTTGTTGATGACCTTCAGGA+TGG 0.487351 7.2:-17027002 MS.gene04879:CDS
TCACCTCTAGAAACCATATC+TGG 0.487464 7.2:+17026535 None:intergenic
CGAGAAATATGGAGAAAGAT+GGG 0.489516 7.2:-17026201 MS.gene04879:CDS
CCGAGAAATATGGAGAAAGA+TGG 0.490569 7.2:-17026202 MS.gene04879:CDS
GTTTGACAGTATGTCACTGT+TGG 0.492792 7.2:-17026802 MS.gene04879:intron
ATGGAGAAAGAGATCAAAAG+TGG 0.501117 7.2:-17026148 MS.gene04879:CDS
GAGGTTGTTGCTTGGAGTAA+GGG 0.507302 7.2:-17026358 MS.gene04879:CDS
AAAGCGACTGCGTAATGCTC+AGG 0.512562 7.2:-17025425 MS.gene04879:CDS
GGTCCTTCTGGAGTTGGTAA+AGG 0.512799 7.2:-17026298 MS.gene04879:CDS
GTTTGGTGCCTAGCACAGTT+GGG 0.517021 7.2:+17026637 None:intergenic
ACTAATATCAATGCTCATGA+AGG 0.517312 7.2:-17026272 MS.gene04879:CDS
GCTTGGAGTAAGGGTGTGAT+AGG 0.517396 7.2:-17026349 MS.gene04879:CDS
TCAAGGAGCAAGATCTGTTA+GGG 0.522205 7.2:-17025631 MS.gene04879:CDS
TTAGACACTGAATGATCTGT+TGG 0.523783 7.2:+17025071 None:intergenic
GTCACTGTTGGAGCTGATGA+TGG 0.527989 7.2:-17026790 MS.gene04879:CDS
GGGGTTCACCCAACTGTGCT+AGG 0.531119 7.2:-17026645 MS.gene04879:CDS
AGAGTGTTATGACAGACTTA+AGG 0.531515 7.2:-17025338 MS.gene04879:intron
GTTGAAGTGGTAGCTGATGC+AGG 0.538538 7.2:-17026067 MS.gene04879:CDS
TGGGGACTGAGGTTGTTGCT+TGG 0.545642 7.2:-17026366 MS.gene04879:CDS
GTTGGTAGATTAATCTCTCT+AGG 0.546143 7.2:+17025089 None:intergenic
TGCAAAACAACTACTGTCGT+TGG 0.554632 7.2:-17026945 MS.gene04879:CDS
TCAAGCTCTTCCATTGATGG+TGG 0.563601 7.2:+17025573 None:intergenic
CATCTCTTCTGGACTTGACA+AGG 0.573859 7.2:-17025021 MS.gene04879:CDS
AATGGTCTTGAATTGAACAA+TGG 0.577419 7.2:-17026972 MS.gene04879:CDS
TCATTGGTGCAGAAATTACT+GGG 0.585295 7.2:-17025246 MS.gene04879:intron
ACCAAACCCTTGTCATGCAA+TGG 0.601097 7.2:-17026621 MS.gene04879:CDS
AAACAGAGGGACTGAGACTG+AGG 0.601275 7.2:-17025458 MS.gene04879:intron
CAGTGTTGAGGCTGTTGAAG+TGG 0.604055 7.2:-17026080 MS.gene04879:CDS
CATTAAGAGGTCCATCCTGA+AGG 0.605764 7.2:+17026991 None:intergenic
TGAGTGTCCATTGCATGACA+AGG 0.606716 7.2:+17026614 None:intergenic
CATCCTGAAGGTCATCAACA+AGG 0.626232 7.2:+17027003 None:intergenic
CACTTCAACAGCCTCAACAC+TGG 0.628025 7.2:+17026081 None:intergenic
GCTCAGGCTGAGATTGAGCA+AGG 0.631772 7.2:-17025409 MS.gene04879:CDS
GTTCCTTTACCAACTCCAGA+AGG 0.638608 7.2:+17026295 None:intergenic
TGACCAGATATGGTTTCTAG+AGG 0.640137 7.2:-17026538 MS.gene04879:intron
GAGTGTCCATTGCATGACAA+GGG 0.640152 7.2:+17026615 None:intergenic
CTGAATATGTTAGACAGCAG+AGG 0.642982 7.2:-17026396 MS.gene04879:CDS
CCACTACTCACCTGTCACGA+AGG 0.647896 7.2:+17025544 None:intergenic
TGGTCCCATACAAATTACCA+TGG 0.653492 7.2:+17026101 None:intergenic
AGGTCATCAACAAGGAACGC+TGG 0.660018 7.2:+17027011 None:intergenic
GAGAAATATGGAGAAAGATG+GGG 0.669595 7.2:-17026200 MS.gene04879:CDS
TTTGTATGGGACCAGTGTTG+AGG 0.692634 7.2:-17026092 MS.gene04879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATTCTTACCTAATT+TGG + chr7.2:17026834-17026853 None:intergenic 15.0%
!! AAAAAATTCTTACCTAATTT+GGG + chr7.2:17026833-17026852 None:intergenic 15.0%
!!! ATTAAGTTAAGACTAAATTT+TGG + chr7.2:17026543-17026562 None:intergenic 15.0%
!!! TAAATGCTAATTTGTTTTAT+TGG - chr7.2:17025596-17025615 MS.gene04879:CDS 15.0%
!!! TTAATTTTTAAATATTCCAG+AGG - chr7.2:17026354-17026373 MS.gene04879:CDS 15.0%
!! ATATTAGAACATTAAATCGT+GGG - chr7.2:17026047-17026066 MS.gene04879:intron 20.0%
!!! AATCAATTCTAAAAACTTCA+AGG + chr7.2:17026176-17026195 None:intergenic 20.0%
!!! AATTCATTTTATTTGAAGCT+TGG - chr7.2:17026024-17026043 MS.gene04879:intron 20.0%
!!! TAATTTGTTTTATTGGTACT+AGG - chr7.2:17025603-17025622 MS.gene04879:CDS 20.0%
!!! TTTGTTACTGATATTCATTT+TGG - chr7.2:17025354-17025373 MS.gene04879:CDS 20.0%
!!! TTTTTGTTTTAGGCATAAAT+TGG + chr7.2:17025192-17025211 None:intergenic 20.0%
! ATTCTTGATATTGATGTTCA+AGG - chr7.2:17026380-17026399 MS.gene04879:CDS 25.0%
! CTGAAAATTTACATTCAGTT+TGG + chr7.2:17026863-17026882 None:intergenic 25.0%
! GATATTAGAACATTAAATCG+TGG - chr7.2:17026046-17026065 MS.gene04879:intron 25.0%
! TTTATGCCTAAAACAAAAAC+CGG - chr7.2:17025193-17025212 MS.gene04879:intron 25.0%
!!! ACTTAATGTTTTGAAAACAG+AGG - chr7.2:17026556-17026575 MS.gene04879:CDS 25.0%
!!! CTTAATGTTTTGAAAACAGA+GGG - chr7.2:17026557-17026576 MS.gene04879:CDS 25.0%
ACTAATATCAATGCTCATGA+AGG - chr7.2:17025756-17025775 MS.gene04879:intron 30.0%
CATGTTAGTATTTACCTTCA+TGG + chr7.2:17026895-17026914 None:intergenic 30.0%
CCAATGAACATACGTATATT+AGG + chr7.2:17026769-17026788 None:intergenic 30.0%
CCTAATATACGTATGTTCAT+TGG - chr7.2:17026766-17026785 MS.gene04879:CDS 30.0%
GGTAAGAAATTGTCGTAATT+CGG + chr7.2:17026327-17026346 None:intergenic 30.0%
GTCAAAAATTTGAACGTCAA+TGG + chr7.2:17025272-17025291 None:intergenic 30.0%
TCTTCTCAGTAAAATGGTAA+TGG + chr7.2:17025855-17025874 None:intergenic 30.0%
TGTCGAAATCTATGGTAATT+TGG + chr7.2:17026096-17026115 None:intergenic 30.0%
TTATGCCTAAAACAAAAACC+GGG - chr7.2:17025194-17025213 MS.gene04879:intron 30.0%
TTCAATTCAAGACCATTAAG+AGG + chr7.2:17025053-17025072 None:intergenic 30.0%
TTCAGTTTATAAAGCCATGA+AGG - chr7.2:17026878-17026897 MS.gene04879:intron 30.0%
! AATGGTCTTGAATTGAACAA+TGG - chr7.2:17025056-17025075 MS.gene04879:CDS 30.0%
! ATATTCATTTTGGATTGCAG+GGG - chr7.2:17025364-17025383 MS.gene04879:CDS 30.0%
! GAGAAACCTATTGTTATTAG+TGG - chr7.2:17025709-17025728 MS.gene04879:intron 30.0%
! GATATTCATTTTGGATTGCA+GGG - chr7.2:17025363-17025382 MS.gene04879:CDS 30.0%
! TGATATTCATTTTGGATTGC+AGG - chr7.2:17025362-17025381 MS.gene04879:CDS 30.0%
!! AGGATGATAAGAACTTTTTC+AGG + chr7.2:17026749-17026768 None:intergenic 30.0%
!!! TAAGAACTTTTTCAGGATTG+AGG + chr7.2:17026742-17026761 None:intergenic 30.0%
!!! TTTGTTTTATTGGTACTAGG+TGG - chr7.2:17025606-17025625 MS.gene04879:CDS 30.0%
AATCCACAGTTCAGCAATAA+TGG + chr7.2:17026255-17026274 None:intergenic 35.0%
ACAGAAAAACCAAACATCGA+AGG + chr7.2:17025787-17025806 None:intergenic 35.0%
AGACAGCAGAGGAAAAAATT+GGG - chr7.2:17025643-17025662 MS.gene04879:CDS 35.0%
ATGGAGAAAGAGATCAAAAG+TGG - chr7.2:17025880-17025899 MS.gene04879:intron 35.0%
CAGAAAAACCAAACATCGAA+GGG + chr7.2:17025786-17025805 None:intergenic 35.0%
CCATCTTTCTCCATATTTCT+CGG + chr7.2:17025829-17025848 None:intergenic 35.0%
CGAGAAATATGGAGAAAGAT+GGG - chr7.2:17025827-17025846 MS.gene04879:intron 35.0%
CTTTCTTAAGAACTAGGATC+CGG + chr7.2:17025457-17025476 None:intergenic 35.0%
GAAGGACCACTAATAACAAT+AGG + chr7.2:17025718-17025737 None:intergenic 35.0%
GAGAAATATGGAGAAAGATG+GGG - chr7.2:17025828-17025847 MS.gene04879:intron 35.0%
GTGACATACTGTCAAACAAA+CGG + chr7.2:17025223-17025242 None:intergenic 35.0%
TAGACAGCAGAGGAAAAAAT+TGG - chr7.2:17025642-17025661 MS.gene04879:CDS 35.0%
TCACACTCTTCTCAGTAAAA+TGG + chr7.2:17025861-17025880 None:intergenic 35.0%
TCATTGGTGCAGAAATTACT+GGG - chr7.2:17026782-17026801 MS.gene04879:CDS 35.0%
TGACAAGGAGTCAAAGAATT+CGG - chr7.2:17027022-17027041 MS.gene04879:CDS 35.0%
TGGAACCTTTCTTAAGAACT+AGG + chr7.2:17025463-17025482 None:intergenic 35.0%
TGGACAGACAAAGATGAATA+TGG + chr7.2:17026438-17026457 None:intergenic 35.0%
TTAGACACTGAATGATCTGT+TGG + chr7.2:17026960-17026979 None:intergenic 35.0%
TTCATTCTGAGTTCAGCTAA+AGG - chr7.2:17026129-17026148 MS.gene04879:CDS 35.0%
TTCATTGGTGCAGAAATTAC+TGG - chr7.2:17026781-17026800 MS.gene04879:CDS 35.0%
! AGAGTGTTATGACAGACTTA+AGG - chr7.2:17026690-17026709 MS.gene04879:intron 35.0%
! ATTGTTATTAGTGGTCCTTC+TGG - chr7.2:17025718-17025737 MS.gene04879:intron 35.0%
! CAAATTTTTGACCGTAGTCT+TGG - chr7.2:17025280-17025299 MS.gene04879:intron 35.0%
! CTGTCCATGGTAATTTGTAT+GGG - chr7.2:17025923-17025942 MS.gene04879:intron 35.0%
! GTTGGTAGATTAATCTCTCT+AGG + chr7.2:17026942-17026961 None:intergenic 35.0%
! TCTGTCCATGGTAATTTGTA+TGG - chr7.2:17025922-17025941 MS.gene04879:intron 35.0%
!! TTTTACTGAGAAGAGTGTGA+TGG - chr7.2:17025861-17025880 MS.gene04879:intron 35.0%
AACCACAACAACGTAATGAG+AGG + chr7.2:17026304-17026323 None:intergenic 40.0%
AACCTCTCATTACGTTGTTG+TGG - chr7.2:17026299-17026318 MS.gene04879:CDS 40.0%
AAGGAATTCCCTTCGATGTT+TGG - chr7.2:17025775-17025794 MS.gene04879:intron 40.0%
ACATACTGTCAAACAAACGG+AGG + chr7.2:17025220-17025239 None:intergenic 40.0%
ACATTAAATCGTGGGTACAC+TGG - chr7.2:17026055-17026074 MS.gene04879:intron 40.0%
ATCATAAGCTGCATCTCTTC+TGG - chr7.2:17026996-17027015 MS.gene04879:CDS 40.0%
CAATATCAAGAATGCACCTC+TGG + chr7.2:17026373-17026392 None:intergenic 40.0%
CAGAAATTACTGGGACTTGA+TGG - chr7.2:17026791-17026810 MS.gene04879:CDS 40.0%
CCAAATCAGATGACCAGATA+TGG - chr7.2:17025480-17025499 MS.gene04879:intron 40.0%
CCATATCTGGTCATCTGATT+TGG + chr7.2:17025483-17025502 None:intergenic 40.0%
CCGAGAAATATGGAGAAAGA+TGG - chr7.2:17025826-17025845 MS.gene04879:intron 40.0%
CCTATGACTTCGAGAATGTA+AGG - chr7.2:17026210-17026229 MS.gene04879:CDS 40.0%
CCTTACATTCTCGAAGTCAT+AGG + chr7.2:17026213-17026232 None:intergenic 40.0%
CTGAATATGTTAGACAGCAG+AGG - chr7.2:17025632-17025651 MS.gene04879:CDS 40.0%
GACAGCAGAGGAAAAAATTG+GGG - chr7.2:17025644-17025663 MS.gene04879:CDS 40.0%
GCAAGACTTGTCGAAATCTA+TGG + chr7.2:17026104-17026123 None:intergenic 40.0%
GCCTTACAAAAACAGCTATG+AGG + chr7.2:17025332-17025351 None:intergenic 40.0%
GTCTGTCATAACACTCTTCA+AGG + chr7.2:17026687-17026706 None:intergenic 40.0%
GTTTGACAGTATGTCACTGT+TGG - chr7.2:17025226-17025245 MS.gene04879:CDS 40.0%
TACTGTCGTTGGCGAAAAAA+CGG - chr7.2:17025094-17025113 MS.gene04879:CDS 40.0%
TCAAGGAGCAAGATCTGTTA+GGG - chr7.2:17026397-17026416 MS.gene04879:CDS 40.0%
TGCAAAACAACTACTGTCGT+TGG - chr7.2:17025083-17025102 MS.gene04879:CDS 40.0%
TGGTCCCATACAAATTACCA+TGG + chr7.2:17025930-17025949 None:intergenic 40.0%
TTCAAGGAGCAAGATCTGTT+AGG - chr7.2:17026396-17026415 MS.gene04879:CDS 40.0%
TTCTCAAGCTCTTCCATTGA+TGG + chr7.2:17026461-17026480 None:intergenic 40.0%
! CGGATCCTAGTTCTTAAGAA+AGG - chr7.2:17025455-17025474 MS.gene04879:CDS 40.0%
! GAGGAAGTTTTTGCTTTAGC+AGG + chr7.2:17026723-17026742 None:intergenic 40.0%
! GTGGATTATAGCGTTGTTAG+AGG - chr7.2:17026268-17026287 MS.gene04879:CDS 40.0%
! TCACCTCTAGAAACCATATC+TGG + chr7.2:17025496-17025515 None:intergenic 40.0%
! TGACCAGATATGGTTTCTAG+AGG - chr7.2:17025490-17025509 MS.gene04879:intron 40.0%
!!! GCCTCATAGCTGTTTTTGTA+AGG - chr7.2:17025328-17025347 MS.gene04879:intron 40.0%
ACCAAACCCTTGTCATGCAA+TGG - chr7.2:17025407-17025426 MS.gene04879:CDS 45.0%
CATCCTGAAGGTCATCAACA+AGG + chr7.2:17025028-17025047 None:intergenic 45.0%
CATCTCTTCTGGACTTGACA+AGG - chr7.2:17027007-17027026 MS.gene04879:CDS 45.0%
CATTAAGAGGTCCATCCTGA+AGG + chr7.2:17025040-17025059 None:intergenic 45.0%
CTGACCATTCTCCAAGACTA+CGG + chr7.2:17025294-17025313 None:intergenic 45.0%
CTTCAGGATGGACCTCTTAA+TGG - chr7.2:17025038-17025057 MS.gene04879:CDS 45.0%
CTTTGTCTGTCCACCATCAA+TGG - chr7.2:17026445-17026464 MS.gene04879:intron 45.0%
GAGCCATTATTGCTGAACTG+TGG - chr7.2:17026249-17026268 MS.gene04879:CDS 45.0%
GAGGAAAAAATTGGGGACTG+AGG - chr7.2:17025651-17025670 MS.gene04879:CDS 45.0%
GAGTGTCCATTGCATGACAA+GGG + chr7.2:17025416-17025435 None:intergenic 45.0%
GTTCCTTTACCAACTCCAGA+AGG + chr7.2:17025736-17025755 None:intergenic 45.0%
GTTGCAACTGCACCCAAATT+AGG - chr7.2:17026818-17026837 MS.gene04879:intron 45.0%
TCAAGCTCTTCCATTGATGG+TGG + chr7.2:17026458-17026477 None:intergenic 45.0%
TCCATTGCATGACAAGGGTT+TGG + chr7.2:17025411-17025430 None:intergenic 45.0%
TCTCCATATTTCTCGGAGCA+CGG + chr7.2:17025822-17025841 None:intergenic 45.0%
TGAGTGTCCATTGCATGACA+AGG + chr7.2:17025417-17025436 None:intergenic 45.0%
TTTGTATGGGACCAGTGTTG+AGG - chr7.2:17025936-17025955 MS.gene04879:intron 45.0%
! CTCGAATTTGCTTCTGTCCA+TGG - chr7.2:17025910-17025929 MS.gene04879:intron 45.0%
! GAGGTTGTTGCTTGGAGTAA+GGG - chr7.2:17025670-17025689 MS.gene04879:intron 45.0%
! GATCCGGTTTTCGAAAAGCA+CGG + chr7.2:17025441-17025460 None:intergenic 45.0%
! TGAGGTTGTTGCTTGGAGTA+AGG - chr7.2:17025669-17025688 MS.gene04879:intron 45.0%
! TTAATCTCTCTAGGTGCTGC+TGG + chr7.2:17026933-17026952 None:intergenic 45.0%
! TTGACCGTAGTCTTGGAGAA+TGG - chr7.2:17025287-17025306 MS.gene04879:intron 45.0%
!! ATTAGTGGTCCTTCTGGAGT+TGG - chr7.2:17025724-17025743 MS.gene04879:intron 45.0%
!! CTTGTTGATGACCTTCAGGA+TGG - chr7.2:17025026-17025045 MS.gene04879:CDS 45.0%
!! GTTCCTTGTTGATGACCTTC+AGG - chr7.2:17025022-17025041 MS.gene04879:CDS 45.0%
!! TATTTAAAAATTAAAATATC+AGG + chr7.2:17026348-17026367 None:intergenic 5.0%
AAACAGAGGGACTGAGACTG+AGG - chr7.2:17026570-17026589 MS.gene04879:CDS 50.0%
AAAGCGACTGCGTAATGCTC+AGG - chr7.2:17026603-17026622 MS.gene04879:CDS 50.0%
AACCCGTGCTCCGAGAAATA+TGG - chr7.2:17025816-17025835 MS.gene04879:intron 50.0%
AGGTCATCAACAAGGAACGC+TGG + chr7.2:17025020-17025039 None:intergenic 50.0%
CACTTCAACAGCCTCAACAC+TGG + chr7.2:17025950-17025969 None:intergenic 50.0%
CTCCATATTTCTCGGAGCAC+GGG + chr7.2:17025821-17025840 None:intergenic 50.0%
GTCACTGTTGGAGCTGATGA+TGG - chr7.2:17025238-17025257 MS.gene04879:intron 50.0%
GTTGAAGTGGTAGCTGATGC+AGG - chr7.2:17025961-17025980 MS.gene04879:intron 50.0%
! CAGCCGTGCTTTTCGAAAAC+CGG - chr7.2:17025435-17025454 MS.gene04879:CDS 50.0%
! CAGTGTTGAGGCTGTTGAAG+TGG - chr7.2:17025948-17025967 MS.gene04879:intron 50.0%
! GAGCATTACGCAGTCGCTTT+AGG + chr7.2:17026603-17026622 None:intergenic 50.0%
! GCTTGGAGTAAGGGTGTGAT+AGG - chr7.2:17025679-17025698 MS.gene04879:intron 50.0%
!! GGTCCTTCTGGAGTTGGTAA+AGG - chr7.2:17025730-17025749 MS.gene04879:intron 50.0%
!! GTTTGGTGCCTAGCACAGTT+GGG + chr7.2:17025394-17025413 None:intergenic 50.0%
!!! GGAGGCCCGGTTTTTGTTTT+AGG + chr7.2:17025202-17025221 None:intergenic 50.0%
ATCGTGGGTACACTGGTGTG+TGG - chr7.2:17026062-17026081 MS.gene04879:intron 55.0%
CCACTACTCACCTGTCACGA+AGG + chr7.2:17026487-17026506 None:intergenic 55.0%
CCTTCGTGACAGGTGAGTAG+TGG - chr7.2:17026484-17026503 MS.gene04879:intron 55.0%
CTGTCAAACAAACGGAGGCC+CGG + chr7.2:17025215-17025234 None:intergenic 55.0%
GCTCAGGCTGAGATTGAGCA+AGG - chr7.2:17026619-17026638 MS.gene04879:CDS 55.0%
TGGGGACTGAGGTTGTTGCT+TGG - chr7.2:17025662-17025681 MS.gene04879:intron 55.0%
!! GGTTTGGTGCCTAGCACAGT+TGG + chr7.2:17025395-17025414 None:intergenic 55.0%
!! TTGAGAAGCGCCTTCGTGAC+AGG - chr7.2:17026474-17026493 MS.gene04879:intron 55.0%
GGGGTTCACCCAACTGTGCT+AGG - chr7.2:17025383-17025402 MS.gene04879:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 17025008 17027042 17025008 ID=MS.gene04879
chr7.2 mRNA 17025008 17027042 17025008 ID=MS.gene04879.t1;Parent=MS.gene04879
chr7.2 exon 17026935 17027042 17026935 ID=MS.gene04879.t1.exon1;Parent=MS.gene04879.t1
chr7.2 CDS 17026935 17027042 17026935 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17026755 17026815 17026755 ID=MS.gene04879.t1.exon2;Parent=MS.gene04879.t1
chr7.2 CDS 17026755 17026815 17026755 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17026539 17026666 17026539 ID=MS.gene04879.t1.exon3;Parent=MS.gene04879.t1
chr7.2 CDS 17026539 17026666 17026539 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17026063 17026425 17026063 ID=MS.gene04879.t1.exon4;Parent=MS.gene04879.t1
chr7.2 CDS 17026063 17026425 17026063 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17025555 17025676 17025555 ID=MS.gene04879.t1.exon5;Parent=MS.gene04879.t1
chr7.2 CDS 17025555 17025676 17025555 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17025339 17025474 17025339 ID=MS.gene04879.t1.exon6;Parent=MS.gene04879.t1
chr7.2 CDS 17025339 17025474 17025339 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17025211 17025256 17025211 ID=MS.gene04879.t1.exon7;Parent=MS.gene04879.t1
chr7.2 CDS 17025211 17025256 17025211 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
chr7.2 exon 17025008 17025113 17025008 ID=MS.gene04879.t1.exon8;Parent=MS.gene04879.t1
chr7.2 CDS 17025008 17025113 17025008 ID=cds.MS.gene04879.t1;Parent=MS.gene04879.t1
Gene Sequence

>MS.gene04879

GGTGAAGCACCAGCGTTCCTTGTTGATGACCTTCAGGATGGACCTCTTAATGGTCTTGAATTGAACAATGGAACTTGCAAAACAACTACTGTCGTTGGCGAAAAAACGGTAAGATTATACTTTATGCTTTCAAGATCATATTTTTATGTGTATTTGTTCATTAATTAGATTAGCTAGCTAGCCAATTTATGCCTAAAACAAAAACCGGGCCTCCGTTTGTTTGACAGTATGTCACTGTTGGAGCTGATGATGGAACTTTGTCCATTGACGTTCAAATTTTTGACCGTAGTCTTGGAGAATGGTCAGTTTGAAGTTTCTTAGCCTCATAGCTGTTTTTGTAAGGCTTTTTGTTACTGATATTCATTTTGGATTGCAGGGGTTCACCCAACTGTGCTAGGCACCAAACCCTTGTCATGCAATGGACACTCAGCCGTGCTTTTCGAAAACCGGATCCTAGTTCTTAAGAAAGGTTCCAAATCAGATGACCAGATATGGTTTCTAGAGGTGAGTGTTTATAAGAAAAGAATATAGTAATGCATGAAAAGTCTGAAAAAATGTAGTAGATTTCTGTGTTATATAAATAAGTGCTAAATGCTAATTTGTTTTATTGGTACTAGGTGGACACTGAATATGTTAGACAGCAGAGGAAAAAATTGGGGACTGAGGTTGTTGCTTGGAGTAAGGGTGTGATAGGCAATGCTGAGAAACCTATTGTTATTAGTGGTCCTTCTGGAGTTGGTAAAGGAACACTAATATCAATGCTCATGAAGGAATTCCCTTCGATGTTTGGTTTTTCTGTGAGTCATACAACCCGTGCTCCGAGAAATATGGAGAAAGATGGGGTCCATTACCATTTTACTGAGAAGAGTGTGATGGAGAAAGAGATCAAAAGTGGAAAGTTTCTCGAATTTGCTTCTGTCCATGGTAATTTGTATGGGACCAGTGTTGAGGCTGTTGAAGTGGTAGCTGATGCAGGAAAAGTAAGTTACTTCTACTTGACTATCATTCTAAATTCTAATTCATTTTATTTGAAGCTTGGATATTAGAACATTAAATCGTGGGTACACTGGTGTGTGGCATTTTATCCAAATTACCATAGATTTCGACAAGTCTTGCATTTATTCATTCTGAGTTCAGCTAAAGGTTTTAAATAAATATTTTTTTTCCTTGAAGTTTTTAGAATTGATTGATTTTTACAAATACCTATGACTTCGAGAATGTAAGGATTGACTTGACTTGAAGAGCCATTATTGCTGAACTGTGGATTATAGCGTTGTTAGAGGCACATAATAACCTCTCATTACGTTGTTGTGGTTCCGAATTACGACAATTTCTTACCTGATATTTTAATTTTTAAATATTCCAGAGGTGCATTCTTGATATTGATGTTCAAGGAGCAAGATCTGTTAGGGCTAGTTCTCTCGAAGCCATATTCATCTTTGTCTGTCCACCATCAATGGAAGAGCTTGAGAAGCGCCTTCGTGACAGGTGAGTAGTGGCTGCTTAGTGATGTATTTTTATTCTCGACTAATCCAAAATTTAGTCTTAACTTAATGTTTTGAAAACAGAGGGACTGAGACTGAGGAACAGATCCTAAAGCGACTGCGTAATGCTCAGGCTGAGATTGAGCAAGGAAAGTCTTCGAATATATTTGATTTCATCTTATACAATGACAACCTTGAAGAGTGTTATGACAGACTTAAGGTAACTCTCCTGCTAAAGCAAAAACTTCCTCAATCCTGAAAAAGTTCTTATCATCCTAATATACGTATGTTCATTGGTGCAGAAATTACTGGGACTTGATGGTTTTGTTGCAACTGCACCCAAATTAGGTAAGAATTTTTTTAAGTAGCCAAACTGAATGTAAATTTTCAGTTTATAAAGCCATGAAGGTAAATACTAACATGTATAAATCTGTCAATCCAGCAGCACCTAGAGAGATTAATCTACCAACAGATCATTCAGTGTCTAAAATTGATGACAAAATCATCATAAGCTGCATCTCTTCTGGACTTGACAAGGAGTCAAAGAATTC
Protein sequence

>MS.gene04879.t1

GEAPAFLVDDLQDGPLNGLELNNGTCKTTTVVGEKTYVTVGADDGTLSIDVQIFDRRVHPTVLGTKPLSCNGHSAVLFENRILVLKKGSKSDDQIWFLEVDTEYVRQQRKKLGTEVVAWSKGVIGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRNMEKDGVHYHFTEKSVMEKEIKSGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGARSVRASSLEAIFIFVCPPSMEELEKRLRDRGTETEEQILKRLRNAQAEIEQGKSSNIFDFILYNDNLEECYDRLKKLLGLDGFVATAPKLAPREINLPTDHSVSKIDDKIIISCISSGLDKESKN