Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014213.t1 | XP_024635160.1 | 94 | 533 | 26 | 3 | 5 | 534 | 30 | 559 | 1.00E-297 | 1031.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014213.t1 | A0A1P8B8F8 | 36.5 | 469 | 281 | 10 | 64 | 521 | 89 | 551 | 2.4e-85 | 317.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014213.t1 | A0A396J1W7 | 94.0 | 533 | 26 | 3 | 5 | 534 | 30 | 559 | 7.3e-298 | 1031.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene014213 | MS.gene044959 | PPI |
| MS.gene014213 | MS.gene75410 | PPI |
| MS.gene014213 | MS.gene53185 | PPI |
| MS.gene014213 | MS.gene90963 | PPI |
| MS.gene062453 | MS.gene014213 | PPI |
| MS.gene014213 | MS.gene003507 | PPI |
| MS.gene014213 | MS.gene057723 | PPI |
| MS.gene014213 | MS.gene032541 | PPI |
| MS.gene014213 | MS.gene62099 | PPI |
| MS.gene014213 | MS.gene52090 | PPI |
| MS.gene99993 | MS.gene014213 | PPI |
| MS.gene014213 | MS.gene59021 | PPI |
| MS.gene054660 | MS.gene014213 | PPI |
| MS.gene014213 | MS.gene74061 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014213.t1 | MTR_3g117800 | 94.019 | 535 | 24 | 4 | 4 | 534 | 5 | 535 | 0.0 | 1035 |
| MS.gene014213.t1 | MTR_3g117800 | 97.095 | 482 | 13 | 1 | 53 | 534 | 4 | 484 | 0.0 | 979 |
| MS.gene014213.t1 | MTR_3g117800 | 97.582 | 455 | 10 | 1 | 80 | 534 | 1 | 454 | 0.0 | 932 |
| MS.gene014213.t1 | MTR_4g074070 | 39.630 | 540 | 281 | 11 | 13 | 521 | 22 | 547 | 1.23e-130 | 392 |
| MS.gene014213.t1 | MTR_5g049180 | 39.662 | 532 | 279 | 8 | 13 | 513 | 22 | 542 | 3.32e-130 | 391 |
| MS.gene014213.t1 | MTR_7g024420 | 39.130 | 529 | 280 | 8 | 13 | 510 | 22 | 539 | 3.00e-129 | 389 |
| MS.gene014213.t1 | MTR_1g106200 | 38.986 | 513 | 274 | 9 | 13 | 493 | 31 | 536 | 1.50e-115 | 354 |
| MS.gene014213.t1 | MTR_1g106910 | 38.041 | 531 | 287 | 11 | 13 | 510 | 31 | 552 | 3.98e-114 | 350 |
| MS.gene014213.t1 | MTR_1g106770 | 35.337 | 549 | 311 | 10 | 20 | 532 | 4 | 544 | 2.37e-111 | 342 |
| MS.gene014213.t1 | MTR_1g106790 | 36.911 | 531 | 293 | 11 | 13 | 510 | 31 | 552 | 3.53e-110 | 340 |
| MS.gene014213.t1 | MTR_1g106200 | 36.257 | 513 | 255 | 9 | 13 | 493 | 37 | 509 | 4.98e-103 | 320 |
| MS.gene014213.t1 | MTR_3g103610 | 33.714 | 525 | 308 | 14 | 25 | 534 | 241 | 740 | 2.28e-77 | 258 |
| MS.gene014213.t1 | MTR_1g017020 | 32.079 | 505 | 322 | 9 | 39 | 534 | 411 | 903 | 2.78e-76 | 258 |
| MS.gene014213.t1 | MTR_4g121520 | 31.373 | 204 | 110 | 5 | 276 | 477 | 223 | 398 | 1.82e-24 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene014213.t1 | AT4G38650 | 65.434 | 541 | 180 | 3 | 1 | 534 | 22 | 562 | 0.0 | 754 |
| MS.gene014213.t1 | AT4G38300 | 71.483 | 263 | 64 | 2 | 163 | 424 | 12 | 264 | 9.51e-138 | 400 |
| MS.gene014213.t1 | AT4G33840 | 37.163 | 557 | 305 | 9 | 13 | 534 | 25 | 571 | 3.97e-132 | 396 |
| MS.gene014213.t1 | AT4G33830 | 38.768 | 552 | 292 | 11 | 13 | 529 | 26 | 566 | 1.17e-129 | 390 |
| MS.gene014213.t1 | AT4G33860 | 39.130 | 529 | 283 | 10 | 13 | 510 | 25 | 545 | 8.51e-128 | 385 |
| MS.gene014213.t1 | AT2G14690 | 35.622 | 539 | 317 | 12 | 13 | 530 | 32 | 561 | 2.84e-102 | 319 |
| MS.gene014213.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 49 | 511 | 2.20e-100 | 313 |
| MS.gene014213.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 49 | 511 | 2.20e-100 | 313 |
| MS.gene014213.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 89 | 551 | 1.02e-99 | 313 |
| MS.gene014213.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 89 | 551 | 1.02e-99 | 313 |
| MS.gene014213.t1 | AT4G33810 | 36.674 | 469 | 280 | 10 | 64 | 521 | 89 | 551 | 1.02e-99 | 313 |
| MS.gene014213.t1 | AT4G33820 | 37.063 | 429 | 258 | 7 | 64 | 486 | 89 | 511 | 2.98e-93 | 296 |
| MS.gene014213.t1 | AT1G58370 | 32.016 | 506 | 322 | 10 | 39 | 534 | 421 | 914 | 1.25e-78 | 265 |
| MS.gene014213.t1 | AT1G58370 | 32.016 | 506 | 322 | 10 | 39 | 534 | 449 | 942 | 2.39e-78 | 265 |
| MS.gene014213.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 628 | 1095 | 6.62e-74 | 254 |
| MS.gene014213.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 6.72e-74 | 254 |
| MS.gene014213.t1 | AT1G10050 | 33.543 | 477 | 301 | 10 | 65 | 534 | 596 | 1063 | 6.72e-74 | 254 |
| MS.gene014213.t1 | AT4G08160 | 30.989 | 526 | 331 | 11 | 25 | 534 | 240 | 749 | 1.49e-69 | 238 |
| MS.gene014213.t1 | AT4G08160 | 33.489 | 427 | 266 | 8 | 25 | 442 | 240 | 657 | 5.40e-63 | 218 |
Find 105 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | 3.4:+100030000 | MS.gene014213:CDS |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | 3.4:-100029179 | None:intergenic |
| TTATTTGTAGGCAATTTATT+TGG | 0.241333 | 3.4:+100029761 | MS.gene014213:intron |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | 3.4:+100027902 | MS.gene014213:CDS |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | 3.4:-100029178 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | 3.4:+100029042 | MS.gene014213:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | 3.4:+100029194 | MS.gene014213:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | 3.4:-100028739 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | 3.4:-100029112 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | 3.4:-100028900 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | 3.4:-100029002 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | 3.4:+100029559 | MS.gene014213:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | 3.4:-100028009 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | 3.4:+100028972 | MS.gene014213:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | 3.4:-100028899 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | 3.4:-100029866 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | 3.4:+100028945 | MS.gene014213:CDS |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | 3.4:+100028994 | MS.gene014213:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | 3.4:-100028008 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | 3.4:-100029542 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | 3.4:-100028171 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | 3.4:+100028572 | MS.gene014213:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | 3.4:+100028531 | MS.gene014213:CDS |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | 3.4:+100029837 | MS.gene014213:CDS |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | 3.4:+100028571 | MS.gene014213:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | 3.4:+100028168 | MS.gene014213:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | 3.4:+100030001 | MS.gene014213:CDS |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | 3.4:+100029006 | MS.gene014213:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | 3.4:+100029939 | MS.gene014213:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | 3.4:+100029927 | MS.gene014213:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | 3.4:+100029817 | MS.gene014213:CDS |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | 3.4:+100029804 | MS.gene014213:CDS |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | 3.4:-100029852 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | 3.4:+100029582 | MS.gene014213:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | 3.4:+100029476 | MS.gene014213:CDS |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | 3.4:+100029349 | MS.gene014213:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | 3.4:-100029344 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | 3.4:-100028768 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | 3.4:-100029597 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | 3.4:-100029208 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | 3.4:-100029596 | None:intergenic |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | 3.4:-100029345 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | 3.4:+100029271 | MS.gene014213:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | 3.4:+100029320 | MS.gene014213:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | 3.4:+100028180 | MS.gene014213:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | 3.4:+100028885 | MS.gene014213:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | 3.4:-100028960 | None:intergenic |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | 3.4:-100028605 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | 3.4:-100030092 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | 3.4:+100029838 | MS.gene014213:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | 3.4:-100029551 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | 3.4:+100029888 | MS.gene014213:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | 3.4:+100028177 | MS.gene014213:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | 3.4:-100029389 | None:intergenic |
| TTATTTGGAGCAAGTATTGA+GGG | 0.502036 | 3.4:+100029776 | MS.gene014213:CDS |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | 3.4:-100028750 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | 3.4:-100028180 | None:intergenic |
| TTTATTTGGAGCAAGTATTG+AGG | 0.512500 | 3.4:+100029775 | MS.gene014213:CDS |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | 3.4:-100028753 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | 3.4:+100028616 | MS.gene014213:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | 3.4:+100029805 | MS.gene014213:CDS |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | 3.4:-100028671 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | 3.4:-100029568 | None:intergenic |
| TTGGAGCAAGTATTGAGGGA+AGG | 0.535261 | 3.4:+100029780 | MS.gene014213:CDS |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | 3.4:-100028985 | None:intergenic |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | 3.4:+100029315 | MS.gene014213:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | 3.4:+100029270 | MS.gene014213:CDS |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | 3.4:-100028655 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | 3.4:+100028174 | MS.gene014213:CDS |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | 3.4:-100029813 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | 3.4:+100028673 | MS.gene014213:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | 3.4:-100028252 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | 3.4:+100029177 | MS.gene014213:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | 3.4:+100029506 | MS.gene014213:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | 3.4:+100029628 | MS.gene014213:CDS |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | 3.4:+100028900 | MS.gene014213:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | 3.4:+100030050 | MS.gene014213:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | 3.4:-100029812 | None:intergenic |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | 3.4:+100029896 | MS.gene014213:CDS |
| CTCAGATGGTAAAGATCACG+TGG | 0.600768 | 3.4:+100028687 | MS.gene014213:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | 3.4:+100029178 | MS.gene014213:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | 3.4:+100028613 | MS.gene014213:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | 3.4:-100028877 | None:intergenic |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | 3.4:+100029505 | MS.gene014213:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | 3.4:+100029134 | MS.gene014213:CDS |
| CAACAACACCAACACGAACA+CGG | 0.618184 | 3.4:+100028224 | MS.gene014213:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | 3.4:-100029069 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | 3.4:+100028889 | MS.gene014213:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | 3.4:-100029077 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | 3.4:+100029919 | MS.gene014213:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | 3.4:-100030091 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | 3.4:+100029065 | MS.gene014213:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | 3.4:-100029903 | None:intergenic |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | 3.4:+100029899 | MS.gene014213:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | 3.4:+100028737 | MS.gene014213:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | 3.4:+100028536 | MS.gene014213:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | 3.4:+100029957 | MS.gene014213:CDS |
| AGGTGAAGCCGTGTTCGTGT+TGG | 0.662305 | 3.4:-100028232 | None:intergenic |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | 3.4:-100029191 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | 3.4:-100028007 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | 3.4:+100028015 | MS.gene014213:CDS |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | 3.4:+100028501 | MS.gene014213:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | 3.4:+100029453 | MS.gene014213:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | 3.4:+100028171 | MS.gene014213:CDS |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | 3.4:-100029875 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATTGAATCAATAAA+AGG | - | chr3.4:100027940-100027959 | None:intergenic | 15.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | + | chr3.4:100029761-100029780 | MS.gene014213:intron | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | - | chr3.4:100028801-100028820 | None:intergenic | 20.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | - | chr3.4:100029348-100029367 | None:intergenic | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | - | chr3.4:100029347-100029366 | None:intergenic | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | + | chr3.4:100028571-100028590 | MS.gene014213:CDS | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | + | chr3.4:100029270-100029289 | MS.gene014213:CDS | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | + | chr3.4:100029476-100029495 | MS.gene014213:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | + | chr3.4:100028945-100028964 | MS.gene014213:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | + | chr3.4:100028572-100028591 | MS.gene014213:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | + | chr3.4:100029271-100029290 | MS.gene014213:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | + | chr3.4:100030001-100030020 | MS.gene014213:CDS | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | + | chr3.4:100028531-100028550 | MS.gene014213:CDS | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | + | chr3.4:100030000-100030019 | MS.gene014213:CDS | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | - | chr3.4:100029392-100029411 | None:intergenic | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | - | chr3.4:100029268-100029287 | None:intergenic | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | + | chr3.4:100029487-100029506 | MS.gene014213:CDS | 25.0% |
| AAGATGGTAGATGAATTTGA+AGG | - | chr3.4:100028658-100028677 | None:intergenic | 30.0% | |
| AGATTATAGAAGACAAGTGA+AGG | - | chr3.4:100028255-100028274 | None:intergenic | 30.0% | |
| ATTAAAAATGATTCCGTTGC+CGG | + | chr3.4:100028368-100028387 | MS.gene014213:intron | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | + | chr3.4:100028536-100028555 | MS.gene014213:CDS | 30.0% | |
| CTCTAACAAATTGCATCATT+TGG | - | chr3.4:100029115-100029134 | None:intergenic | 30.0% | |
| CTTGTAATTTCCTTCCATTA+GGG | - | chr3.4:100028902-100028921 | None:intergenic | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | + | chr3.4:100028449-100028468 | MS.gene014213:intron | 30.0% | |
| TGCCTACAAATAAAGAATGA+AGG | - | chr3.4:100029754-100029773 | None:intergenic | 30.0% | |
| TGCTACATTTCATTTCTTTG+AGG | + | chr3.4:100029349-100029368 | MS.gene014213:CDS | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | - | chr3.4:100029005-100029024 | None:intergenic | 30.0% | |
| ! | ACTTTGATTTCTACGAACAA+AGG | + | chr3.4:100029315-100029334 | MS.gene014213:CDS | 30.0% |
| ! | ATGGTTCACATAGCTTTTAT+GGG | + | chr3.4:100029976-100029995 | MS.gene014213:CDS | 30.0% |
| ! | GACACTATCTATTCTTTTTC+TGG | + | chr3.4:100028282-100028301 | MS.gene014213:CDS | 30.0% |
| ! | TAGAGGACACAATATTTTCT+GGG | + | chr3.4:100029151-100029170 | MS.gene014213:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | + | chr3.4:100029042-100029061 | MS.gene014213:CDS | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | + | chr3.4:100029749-100029768 | MS.gene014213:intron | 30.0% |
| ! | TTTATTTGGAGCAAGTATTG+AGG | + | chr3.4:100029775-100029794 | MS.gene014213:CDS | 30.0% |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | + | chr3.4:100029006-100029025 | MS.gene014213:CDS | 30.0% |
| !! | CAATATGGTGTTTTTATGGA+TGG | + | chr3.4:100029491-100029510 | MS.gene014213:CDS | 30.0% |
| !! | CAGTGTTGATGATATATTGT+TGG | - | chr3.4:100028771-100028790 | None:intergenic | 30.0% |
| !! | TTATTTGGAGCAAGTATTGA+GGG | + | chr3.4:100029776-100029795 | MS.gene014213:CDS | 30.0% |
| AAGAGCTATCCTAGACAAAT+TGG | + | chr3.4:100029559-100029578 | MS.gene014213:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | - | chr3.4:100028436-100028455 | None:intergenic | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | - | chr3.4:100028988-100029007 | None:intergenic | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | - | chr3.4:100029600-100029619 | None:intergenic | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | - | chr3.4:100028674-100028693 | None:intergenic | 35.0% | |
| ATCTTAACTGTGTACCTGTA+AGG | - | chr3.4:100029211-100029230 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | + | chr3.4:100028673-100028692 | MS.gene014213:CDS | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | + | chr3.4:100028900-100028919 | MS.gene014213:CDS | 35.0% | |
| CCTTGTAATTTCCTTCCATT+AGG | - | chr3.4:100028903-100028922 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | + | chr3.4:100028448-100028467 | MS.gene014213:intron | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | + | chr3.4:100029888-100029907 | MS.gene014213:CDS | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | + | chr3.4:100028994-100029013 | MS.gene014213:CDS | 35.0% | |
| GCTCTTATAAGTGGAAGATT+TGG | - | chr3.4:100029545-100029564 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | - | chr3.4:100028011-100028030 | None:intergenic | 35.0% | |
| TAAGCAGTAGAGTCATATAG+GGG | - | chr3.4:100028010-100028029 | None:intergenic | 35.0% | |
| TCAACTTTCTCTCTATGTAG+AGG | + | chr3.4:100030050-100030069 | MS.gene014213:CDS | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | + | chr3.4:100029919-100029938 | MS.gene014213:CDS | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | - | chr3.4:100028012-100028031 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | - | chr3.4:100029878-100029897 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | + | chr3.4:100028369-100028388 | MS.gene014213:intron | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | - | chr3.4:100028756-100028775 | None:intergenic | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | + | chr3.4:100029984-100030003 | MS.gene014213:CDS | 35.0% |
| ! | CATGGTTCACATAGCTTTTA+TGG | + | chr3.4:100029975-100029994 | MS.gene014213:CDS | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | + | chr3.4:100029150-100029169 | MS.gene014213:CDS | 35.0% |
| ! | TCCTCTAGCTATGATTTTGT+TGG | - | chr3.4:100029138-100029157 | None:intergenic | 35.0% |
| ! | TCTAGGATAGCTCTTATAAG+TGG | - | chr3.4:100029554-100029573 | None:intergenic | 35.0% |
| !! | CGATATTGTTTTGTTGCAGA+TGG | + | chr3.4:100027983-100028002 | MS.gene014213:intron | 35.0% |
| !! | GGTGTTTTTATGGATGGAAT+TGG | + | chr3.4:100029497-100029516 | MS.gene014213:CDS | 35.0% |
| AAATGACCAACATCCACGTT+TGG | - | chr3.4:100028608-100028627 | None:intergenic | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | - | chr3.4:100029182-100029201 | None:intergenic | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | + | chr3.4:100029177-100029196 | MS.gene014213:CDS | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | - | chr3.4:100029816-100029835 | None:intergenic | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | + | chr3.4:100028889-100028908 | MS.gene014213:CDS | 40.0% | |
| CACACTTGATCATGATACTC+AGG | + | chr3.4:100029628-100029647 | MS.gene014213:CDS | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | - | chr3.4:100028482-100028501 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | + | chr3.4:100029817-100029836 | MS.gene014213:CDS | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | + | chr3.4:100028480-100028499 | MS.gene014213:intron | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | - | chr3.4:100029181-100029200 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | + | chr3.4:100029178-100029197 | MS.gene014213:CDS | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | + | chr3.4:100028428-100028447 | MS.gene014213:intron | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | - | chr3.4:100029571-100029590 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | + | chr3.4:100029320-100029339 | MS.gene014213:CDS | 40.0% | |
| GCATTATCCCATTCACTGAA+GGG | - | chr3.4:100029815-100029834 | None:intergenic | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | + | chr3.4:100029134-100029153 | MS.gene014213:CDS | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | + | chr3.4:100028613-100028632 | MS.gene014213:CDS | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | + | chr3.4:100027902-100027921 | MS.gene014213:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | - | chr3.4:100028423-100028442 | None:intergenic | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | - | chr3.4:100028880-100028899 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | + | chr3.4:100028885-100028904 | MS.gene014213:CDS | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | - | chr3.4:100029599-100029618 | None:intergenic | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | + | chr3.4:100028616-100028635 | MS.gene014213:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | + | chr3.4:100029633-100029652 | MS.gene014213:intron | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | + | chr3.4:100028599-100028618 | MS.gene014213:CDS | 40.0% |
| AGCCATTTACTCACCACCAA+TGG | + | chr3.4:100028737-100028756 | MS.gene014213:CDS | 45.0% | |
| CAACAACACCAACACGAACA+CGG | + | chr3.4:100028224-100028243 | MS.gene014213:CDS | 45.0% | |
| CAACACTAGATCTTCCCGTT+TGG | + | chr3.4:100029582-100029601 | MS.gene014213:CDS | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | + | chr3.4:100029896-100029915 | MS.gene014213:CDS | 45.0% | |
| CATTGTCTGTGAGGCACATT+TGG | - | chr3.4:100029869-100029888 | None:intergenic | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | - | chr3.4:100028431-100028450 | None:intergenic | 45.0% | |
| CTCAGATGGTAAAGATCACG+TGG | + | chr3.4:100028687-100028706 | MS.gene014213:CDS | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | + | chr3.4:100029927-100029946 | MS.gene014213:CDS | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | + | chr3.4:100029194-100029213 | MS.gene014213:CDS | 45.0% | |
| GCGATAGCAAAGACCATTCT+TGG | + | chr3.4:100028972-100028991 | MS.gene014213:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | + | chr3.4:100029838-100029857 | MS.gene014213:CDS | 45.0% | |
| GTAAGGTTAAGAACCCATGC+AGG | - | chr3.4:100029194-100029213 | None:intergenic | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | + | chr3.4:100029805-100029824 | MS.gene014213:CDS | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | + | chr3.4:100028015-100028034 | MS.gene014213:CDS | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | + | chr3.4:100029837-100029856 | MS.gene014213:CDS | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | - | chr3.4:100029906-100029925 | None:intergenic | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | + | chr3.4:100029804-100029823 | MS.gene014213:CDS | 45.0% | |
| ! | ATGGATGGAATTGGTCTCGA+GGG | + | chr3.4:100029506-100029525 | MS.gene014213:CDS | 45.0% |
| ! | CACATTTGGTAGCACCCATA+TGG | - | chr3.4:100029855-100029874 | None:intergenic | 45.0% |
| ! | CATCCAGAGAAGCCACTTTA+CGG | + | chr3.4:100028168-100028187 | MS.gene014213:CDS | 45.0% |
| ! | GCGTTGACGCTTATATCTCA+CGG | + | chr3.4:100029453-100029472 | MS.gene014213:CDS | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | - | chr3.4:100028753-100028772 | None:intergenic | 45.0% |
| ! | TAGTTGACTCTGCCTTCATG+AGG | - | chr3.4:100029080-100029099 | None:intergenic | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | + | chr3.4:100029505-100029524 | MS.gene014213:CDS | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | - | chr3.4:100028963-100028982 | None:intergenic | 45.0% |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | - | chr3.4:100028742-100028761 | None:intergenic | 45.0% |
| !! | GAAGGTATCACAGATGAGCA+TGG | + | chr3.4:100029957-100029976 | MS.gene014213:CDS | 45.0% |
| !! | TTGGAGCAAGTATTGAGGGA+AGG | + | chr3.4:100029780-100029799 | MS.gene014213:CDS | 45.0% |
| CTACTGCTTACACTCAGGTG+AGG | + | chr3.4:100028020-100028039 | MS.gene014213:intron | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | + | chr3.4:100029899-100029918 | MS.gene014213:CDS | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | + | chr3.4:100029655-100029674 | MS.gene014213:intron | 50.0% | |
| TATGCCACAGAGCCTCATGA+AGG | + | chr3.4:100029065-100029084 | MS.gene014213:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | + | chr3.4:100028495-100028514 | MS.gene014213:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | + | chr3.4:100029939-100029958 | MS.gene014213:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | + | chr3.4:100028592-100028611 | MS.gene014213:CDS | 50.0% |
| AGGTGAAGCCGTGTTCGTGT+TGG | - | chr3.4:100028235-100028254 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | - | chr3.4:100028174-100028193 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | + | chr3.4:100028494-100028513 | MS.gene014213:intron | 55.0% | |
| CTGCTTACACTCAGGTGAGG+TGG | + | chr3.4:100028023-100028042 | MS.gene014213:intron | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | + | chr3.4:100028501-100028520 | MS.gene014213:intron | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | - | chr3.4:100029072-100029091 | None:intergenic | 55.0% | |
| ! | AAGCCACTTTACGGTGGAGG+AGG | + | chr3.4:100028177-100028196 | MS.gene014213:CDS | 55.0% |
| ! | CCAGAGAAGCCACTTTACGG+TGG | + | chr3.4:100028171-100028190 | MS.gene014213:CDS | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | + | chr3.4:100028174-100028193 | MS.gene014213:CDS | 55.0% |
| AGAGACCCGGGTTCAAGTCC+CGG | - | chr3.4:100028390-100028409 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | + | chr3.4:100028180-100028199 | MS.gene014213:CDS | 60.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | - | chr3.4:100028183-100028202 | None:intergenic | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | + | chr3.4:100028391-100028410 | MS.gene014213:intron | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | + | chr3.4:100028390-100028409 | MS.gene014213:intron | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | - | chr3.4:100028384-100028403 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | + | chr3.4:100028381-100028400 | MS.gene014213:intron | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | + | chr3.4:100028382-100028401 | MS.gene014213:intron | 65.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | - | chr3.4:100028403-100028422 | None:intergenic | 70.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | - | chr3.4:100028402-100028421 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 100027899 | 100030106 | 100027899 | ID=MS.gene014213 |
| chr3.4 | mRNA | 100027899 | 100030106 | 100027899 | ID=MS.gene014213.t1;Parent=MS.gene014213 |
| chr3.4 | exon | 100027899 | 100027923 | 100027899 | ID=MS.gene014213.t1.exon1;Parent=MS.gene014213.t1 |
| chr3.4 | CDS | 100027899 | 100027923 | 100027899 | ID=cds.MS.gene014213.t1;Parent=MS.gene014213.t1 |
| chr3.4 | exon | 100028002 | 100028036 | 100028002 | ID=MS.gene014213.t1.exon2;Parent=MS.gene014213.t1 |
| chr3.4 | CDS | 100028002 | 100028036 | 100028002 | ID=cds.MS.gene014213.t1;Parent=MS.gene014213.t1 |
| chr3.4 | exon | 100028159 | 100028303 | 100028159 | ID=MS.gene014213.t1.exon3;Parent=MS.gene014213.t1 |
| chr3.4 | CDS | 100028159 | 100028303 | 100028159 | ID=cds.MS.gene014213.t1;Parent=MS.gene014213.t1 |
| chr3.4 | exon | 100028512 | 100028789 | 100028512 | ID=MS.gene014213.t1.exon4;Parent=MS.gene014213.t1 |
| chr3.4 | CDS | 100028512 | 100028789 | 100028512 | ID=cds.MS.gene014213.t1;Parent=MS.gene014213.t1 |
| chr3.4 | exon | 100028864 | 100029649 | 100028864 | ID=MS.gene014213.t1.exon5;Parent=MS.gene014213.t1 |
| chr3.4 | CDS | 100028864 | 100029649 | 100028864 | ID=cds.MS.gene014213.t1;Parent=MS.gene014213.t1 |
| chr3.4 | exon | 100029771 | 100030106 | 100029771 | ID=MS.gene014213.t1.exon6;Parent=MS.gene014213.t1 |
| chr3.4 | CDS | 100029771 | 100030106 | 100029771 | ID=cds.MS.gene014213.t1;Parent=MS.gene014213.t1 |
| Gene Sequence |
| Protein sequence |
