Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054660.t1 | XP_003621871.1 | 87.7 | 570 | 59 | 1 | 1 | 559 | 1 | 570 | 4.50E-296 | 1026.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054660.t1 | A0A1P8B8F8 | 38.9 | 552 | 313 | 10 | 7 | 542 | 10 | 553 | 1.7e-110 | 401.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054660.t1 | G7KWV0 | 87.7 | 570 | 59 | 1 | 1 | 559 | 1 | 570 | 3.2e-296 | 1026.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene054660 | MS.gene59021 | PPI |
| MS.gene054660 | MS.gene062453 | PPI |
| MS.gene054660 | MS.gene003507 | PPI |
| MS.gene054660 | MS.gene032541 | PPI |
| MS.gene054660 | MS.gene62099 | PPI |
| MS.gene054660 | MS.gene68749 | PPI |
| MS.gene054660 | MS.gene044959 | PPI |
| MS.gene054660 | MS.gene52090 | PPI |
| MS.gene054660 | MS.gene99993 | PPI |
| MS.gene054660 | MS.gene063101 | PPI |
| MS.gene054660 | MS.gene74061 | PPI |
| MS.gene054660 | MS.gene68149 | PPI |
| MS.gene062453 | MS.gene054660 | PPI |
| MS.gene054660 | MS.gene53185 | PPI |
| MS.gene054660 | MS.gene75410 | PPI |
| MS.gene054660 | MS.gene90963 | PPI |
| MS.gene99993 | MS.gene054660 | PPI |
| MS.gene054660 | MS.gene057723 | PPI |
| MS.gene054660 | MS.gene014213 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054660.t1 | MTR_7g024420 | 87.719 | 570 | 59 | 1 | 1 | 559 | 1 | 570 | 0.0 | 1023 |
| MS.gene054660.t1 | MTR_5g049180 | 78.421 | 570 | 112 | 1 | 1 | 559 | 1 | 570 | 0.0 | 948 |
| MS.gene054660.t1 | MTR_4g074070 | 72.855 | 571 | 143 | 2 | 1 | 559 | 1 | 571 | 0.0 | 894 |
| MS.gene054660.t1 | MTR_1g106200 | 47.970 | 542 | 266 | 4 | 9 | 534 | 18 | 559 | 0.0 | 535 |
| MS.gene054660.t1 | MTR_1g106790 | 47.398 | 538 | 268 | 4 | 8 | 530 | 17 | 554 | 0.0 | 526 |
| MS.gene054660.t1 | MTR_1g106910 | 46.403 | 556 | 280 | 5 | 8 | 548 | 17 | 569 | 0.0 | 523 |
| MS.gene054660.t1 | MTR_1g106770 | 46.641 | 521 | 263 | 4 | 29 | 534 | 4 | 524 | 3.81e-174 | 504 |
| MS.gene054660.t1 | MTR_1g106200 | 43.911 | 542 | 255 | 5 | 9 | 534 | 24 | 532 | 1.30e-159 | 467 |
| MS.gene054660.t1 | MTR_3g117800 | 37.956 | 548 | 314 | 10 | 9 | 549 | 1 | 529 | 3.75e-131 | 393 |
| MS.gene054660.t1 | MTR_3g117800 | 41.037 | 463 | 263 | 6 | 81 | 536 | 9 | 468 | 7.84e-126 | 378 |
| MS.gene054660.t1 | MTR_3g117800 | 43.294 | 425 | 233 | 4 | 117 | 536 | 17 | 438 | 7.15e-125 | 374 |
| MS.gene054660.t1 | MTR_1g017020 | 30.037 | 546 | 319 | 14 | 35 | 532 | 353 | 883 | 2.06e-65 | 229 |
| MS.gene054660.t1 | MTR_3g103610 | 30.712 | 534 | 301 | 15 | 43 | 526 | 200 | 714 | 5.78e-63 | 220 |
| MS.gene054660.t1 | MTR_4g121520 | 39.662 | 237 | 92 | 2 | 294 | 530 | 223 | 408 | 4.15e-46 | 168 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054660.t1 | AT4G33840 | 57.664 | 548 | 213 | 6 | 16 | 547 | 19 | 563 | 0.0 | 667 |
| MS.gene054660.t1 | AT4G33830 | 57.092 | 557 | 219 | 7 | 6 | 546 | 10 | 562 | 0.0 | 659 |
| MS.gene054660.t1 | AT4G33860 | 57.431 | 545 | 213 | 6 | 16 | 544 | 19 | 560 | 0.0 | 656 |
| MS.gene054660.t1 | AT4G33810 | 38.849 | 556 | 308 | 10 | 7 | 542 | 10 | 553 | 1.54e-133 | 400 |
| MS.gene054660.t1 | AT4G33810 | 38.849 | 556 | 308 | 10 | 7 | 542 | 10 | 553 | 1.54e-133 | 400 |
| MS.gene054660.t1 | AT4G33810 | 38.849 | 556 | 308 | 10 | 7 | 542 | 10 | 553 | 1.54e-133 | 400 |
| MS.gene054660.t1 | AT4G33820 | 38.779 | 557 | 308 | 10 | 7 | 542 | 10 | 554 | 1.30e-131 | 395 |
| MS.gene054660.t1 | AT4G38650 | 40.267 | 524 | 291 | 7 | 22 | 535 | 34 | 545 | 1.83e-131 | 395 |
| MS.gene054660.t1 | AT4G33810 | 41.935 | 465 | 260 | 5 | 86 | 542 | 51 | 513 | 6.79e-131 | 392 |
| MS.gene054660.t1 | AT4G33810 | 41.935 | 465 | 260 | 5 | 86 | 542 | 51 | 513 | 6.79e-131 | 392 |
| MS.gene054660.t1 | AT2G14690 | 37.338 | 541 | 309 | 8 | 18 | 542 | 28 | 554 | 3.33e-119 | 364 |
| MS.gene054660.t1 | AT4G38300 | 45.560 | 259 | 129 | 2 | 179 | 437 | 10 | 256 | 3.67e-75 | 240 |
| MS.gene054660.t1 | AT1G58370 | 29.444 | 540 | 319 | 14 | 35 | 526 | 362 | 887 | 7.33e-64 | 225 |
| MS.gene054660.t1 | AT1G58370 | 29.444 | 540 | 319 | 14 | 35 | 526 | 390 | 915 | 9.38e-64 | 225 |
| MS.gene054660.t1 | AT1G10050 | 28.679 | 530 | 322 | 15 | 43 | 526 | 550 | 1069 | 1.92e-56 | 205 |
| MS.gene054660.t1 | AT1G10050 | 28.679 | 530 | 322 | 15 | 43 | 526 | 518 | 1037 | 2.13e-56 | 205 |
| MS.gene054660.t1 | AT1G10050 | 28.679 | 530 | 322 | 15 | 43 | 526 | 518 | 1037 | 2.13e-56 | 205 |
| MS.gene054660.t1 | AT4G08160 | 31.472 | 394 | 257 | 9 | 143 | 529 | 339 | 726 | 1.38e-53 | 194 |
| MS.gene054660.t1 | AT4G08160 | 33.333 | 324 | 205 | 7 | 143 | 460 | 339 | 657 | 1.94e-49 | 181 |
Find 128 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATACTTCTGCGGAAATT+TGG | 0.146645 | 5.3:-31943902 | MS.gene054660:CDS |
| TTAGAGGCCACAATATATTT+TGG | 0.167474 | 5.3:-31943432 | MS.gene054660:CDS |
| TTTGAATCTCTTTGATCTTT+TGG | 0.167892 | 5.3:+31943113 | None:intergenic |
| ATCCTAAATACCAACCTTAT+TGG | 0.173697 | 5.3:-31943405 | MS.gene054660:CDS |
| ACCCAATAAGGTTGGTATTT+AGG | 0.193871 | 5.3:+31943403 | None:intergenic |
| CTTTGTGTCATCCTACTTTC+AGG | 0.197016 | 5.3:-31945697 | MS.gene054660:intron |
| ACAACCAAAGGATTTAAATT+TGG | 0.200208 | 5.3:-31944108 | MS.gene054660:CDS |
| GCGCCACTGGTTTGCCAATA+TGG | 0.238352 | 5.3:-31942991 | MS.gene054660:CDS |
| GGTCGCCACAAGGTTGTTAT+AGG | 0.291268 | 5.3:-31942777 | MS.gene054660:CDS |
| TGTAGTCCATCATTCAATTC+CGG | 0.295809 | 5.3:+31944327 | None:intergenic |
| ACATTCTCATCCTGGGATTC+AGG | 0.306111 | 5.3:-31942821 | MS.gene054660:CDS |
| AACTACTACTTTCCTCTTGC+GGG | 0.313714 | 5.3:+31943717 | None:intergenic |
| AGGCCTCAAAGTATCCATTT+TGG | 0.316564 | 5.3:+31942653 | None:intergenic |
| GCATTTAGAATATGCATAAA+TGG | 0.323795 | 5.3:+31944080 | None:intergenic |
| ACCACCAAATTTAAATCCTT+TGG | 0.324920 | 5.3:+31944104 | None:intergenic |
| AGCCGATTGCCTCTTGGAAT+TGG | 0.326369 | 5.3:-31943082 | MS.gene054660:CDS |
| TCCTAAATACCAACCTTATT+GGG | 0.330100 | 5.3:-31943404 | MS.gene054660:CDS |
| TAATACTTCTGCGGAAATTT+GGG | 0.337149 | 5.3:-31943901 | MS.gene054660:CDS |
| TAAATGCTGGTCCATGCTTA+AGG | 0.347457 | 5.3:-31944064 | MS.gene054660:CDS |
| ATCAGCATTGGTTTGCATCT+AGG | 0.350966 | 5.3:-31943576 | MS.gene054660:CDS |
| TTTCGTAGTCGCCGTGGAAA+AGG | 0.351378 | 5.3:+31942629 | None:intergenic |
| CGTCGCAAGCCAACCTAATC+AGG | 0.365336 | 5.3:-31942954 | MS.gene054660:intron |
| AGATACAAGGGACAGCTTAT+TGG | 0.366383 | 5.3:-31943316 | MS.gene054660:CDS |
| GTAGTCCATCATTCAATTCC+GGG | 0.366767 | 5.3:+31944328 | None:intergenic |
| CCACAAAAGCCTCAGTATAA+TGG | 0.367830 | 5.3:-31944366 | MS.gene054660:CDS |
| TCAAGGGCAGCTCTCATATA+AGG | 0.370009 | 5.3:+31943022 | None:intergenic |
| TTTCCACGGCGACTACGAAA+TGG | 0.378456 | 5.3:-31942626 | MS.gene054660:CDS |
| GTAAGAGATATACTTGCATT+TGG | 0.383405 | 5.3:+31943664 | None:intergenic |
| TCTAATTCAGTGATCCATAT+TGG | 0.391697 | 5.3:+31942977 | None:intergenic |
| CTACAAGGATGGACAGCATT+TGG | 0.393452 | 5.3:-31944309 | MS.gene054660:CDS |
| TCAGGGATGACAGACCAAAA+TGG | 0.396995 | 5.3:-31942667 | MS.gene054660:CDS |
| TTAACGCTGCAGTCGAAAAC+AGG | 0.406990 | 5.3:-31943357 | MS.gene054660:CDS |
| GGCAAGTTAGGAGGACTACT+AGG | 0.422134 | 5.3:+31943043 | None:intergenic |
| AAATGCTGGTCCATGCTTAA+GGG | 0.423126 | 5.3:-31944063 | MS.gene054660:CDS |
| CTTGATACCCTTCGCGCCAC+TGG | 0.423498 | 5.3:-31943004 | MS.gene054660:CDS |
| GCTCTCATATAAGGCAAGTT+AGG | 0.424374 | 5.3:+31943031 | None:intergenic |
| GCTGATATGCAATATTGTTC+AGG | 0.425967 | 5.3:+31943593 | None:intergenic |
| ACCAAAGGATTTAAATTTGG+TGG | 0.427149 | 5.3:-31944105 | MS.gene054660:CDS |
| GACAGTGAAGAAACCCAATA+AGG | 0.439540 | 5.3:+31943391 | None:intergenic |
| ATAAGCTGTCCCTTGTATCT+TGG | 0.444987 | 5.3:+31943319 | None:intergenic |
| TCGTTCTTTGAAAGTAAACT+AGG | 0.449705 | 5.3:-31943262 | MS.gene054660:CDS |
| CAAGGGACAGCTTATTGGTT+GGG | 0.452749 | 5.3:-31943311 | MS.gene054660:CDS |
| CAGTGGCGCGAAGGGTATCA+AGG | 0.456864 | 5.3:+31943005 | None:intergenic |
| CGATCGGCTGATCAATGAAT+GGG | 0.461415 | 5.3:-31942704 | MS.gene054660:CDS |
| ATCATTCGGCAACAAATTTG+TGG | 0.461505 | 5.3:-31944262 | MS.gene054660:CDS |
| CATTCTCATCCTGGGATTCA+GGG | 0.466892 | 5.3:-31942820 | MS.gene054660:CDS |
| AGAGAGGCACATTCTCATCC+TGG | 0.468556 | 5.3:-31942829 | MS.gene054660:CDS |
| AAACACGGTATTGCTGTTAG+AGG | 0.472356 | 5.3:-31943448 | MS.gene054660:CDS |
| CAGAAGATTTACCTACGAAA+AGG | 0.473611 | 5.3:-31944201 | MS.gene054660:CDS |
| TTTATGCATATTCTAAATGC+TGG | 0.476393 | 5.3:-31944077 | MS.gene054660:CDS |
| TTTCGACTGCAGCGTTAAGC+TGG | 0.478600 | 5.3:+31943362 | None:intergenic |
| ACAATATTGCATATCAGCAT+TGG | 0.483381 | 5.3:-31943588 | MS.gene054660:CDS |
| GTGAATAGCCGATTGCCTCT+TGG | 0.483402 | 5.3:-31943088 | MS.gene054660:CDS |
| ACTGCAGCGTTAAGCTGGTT+CGG | 0.488279 | 5.3:+31943367 | None:intergenic |
| TTTCAAAGAACGAGAAATGC+AGG | 0.489934 | 5.3:+31943272 | None:intergenic |
| TTCAGCTAGGATGTTTAATG+AGG | 0.497481 | 5.3:-31943230 | MS.gene054660:CDS |
| TTGGTTTGCATCTAGGTTCA+CGG | 0.499951 | 5.3:-31943569 | MS.gene054660:CDS |
| ATTATAATGCCCTGAATCCC+AGG | 0.500660 | 5.3:+31942811 | None:intergenic |
| TTCGTAGTCGCCGTGGAAAA+GGG | 0.505722 | 5.3:+31942630 | None:intergenic |
| TCAAGAACAAAGTATCGAAA+AGG | 0.510123 | 5.3:-31943829 | MS.gene054660:intron |
| CGTTCTTTGAAAGTAAACTA+GGG | 0.511926 | 5.3:-31943261 | MS.gene054660:CDS |
| TCGATCGGCTGATCAATGAA+TGG | 0.512209 | 5.3:-31942705 | MS.gene054660:CDS |
| GAGAGGCACATTCTCATCCT+GGG | 0.514013 | 5.3:-31942828 | MS.gene054660:CDS |
| TTGTTGATGGCACTTCCAAA+TGG | 0.526049 | 5.3:+31943622 | None:intergenic |
| ATAGAATACAGAGAATCATT+CGG | 0.526685 | 5.3:-31944276 | MS.gene054660:CDS |
| TCTCTTACAATGAAGAGGTA+TGG | 0.528303 | 5.3:-31943649 | MS.gene054660:CDS |
| GTCCAATTCCAAGAGGCAAT+CGG | 0.535358 | 5.3:+31943080 | None:intergenic |
| GAACTACTACTTTCCTCTTG+CGG | 0.539477 | 5.3:+31943716 | None:intergenic |
| AATTTCAAGAACTTGCCTGC+AGG | 0.540391 | 5.3:-31942736 | MS.gene054660:CDS |
| TGGCAAACCAGTGGCGCGAA+GGG | 0.543313 | 5.3:+31942997 | None:intergenic |
| GTTCAAGCCGTTGACGAACA+AGG | 0.543613 | 5.3:-31943697 | MS.gene054660:CDS |
| GACGTTCGCACTATAATCAT+AGG | 0.544116 | 5.3:+31944490 | None:intergenic |
| TTCCATTGTACCAAGATACA+AGG | 0.544434 | 5.3:-31943329 | MS.gene054660:CDS |
| ACATTATTATTCTTCTTGAG+AGG | 0.544752 | 5.3:+31942592 | None:intergenic |
| ACAAGGGACAGCTTATTGGT+TGG | 0.545098 | 5.3:-31943312 | MS.gene054660:CDS |
| TTGGCAAACCAGTGGCGCGA+AGG | 0.547234 | 5.3:+31942996 | None:intergenic |
| GGTCTTATAGCAGATACAAC+AGG | 0.554787 | 5.3:-31944039 | MS.gene054660:CDS |
| CATTATTATTCTTCTTGAGA+GGG | 0.555776 | 5.3:+31942593 | None:intergenic |
| TCCCTTGTATCTTGGTACAA+TGG | 0.560383 | 5.3:+31943327 | None:intergenic |
| GTAGGCATGGTACTTCGAGC+AGG | 0.561753 | 5.3:-31942857 | MS.gene054660:intron |
| AATGCTGGTCCATGCTTAAG+GGG | 0.562077 | 5.3:-31944062 | MS.gene054660:CDS |
| GCAAGTTAGGAGGACTACTA+GGG | 0.569336 | 5.3:+31943044 | None:intergenic |
| CTCATATAAGGCAAGTTAGG+AGG | 0.569850 | 5.3:+31943034 | None:intergenic |
| ACCGTCTCTACTATCCTCAA+TGG | 0.570829 | 5.3:+31943159 | None:intergenic |
| GAATTGAATGATGGACTACA+AGG | 0.572886 | 5.3:-31944324 | MS.gene054660:CDS |
| GTGGTTACAAACCTGAAAGT+AGG | 0.579019 | 5.3:+31945686 | None:intergenic |
| CGATCGACAACATCACCTGC+AGG | 0.581257 | 5.3:+31942721 | None:intergenic |
| AGCAGCTGAGCTCTACTTCG+AGG | 0.583057 | 5.3:-31944016 | MS.gene054660:intron |
| GTGAAGAAACCCAATAAGGT+TGG | 0.583381 | 5.3:+31943395 | None:intergenic |
| AGACCAAAATGGATACTTTG+AGG | 0.584675 | 5.3:-31942656 | MS.gene054660:CDS |
| GTATATCTCTTACAATGAAG+AGG | 0.584879 | 5.3:-31943654 | MS.gene054660:CDS |
| AGAGTGCCCTTGTTCGTCAA+CGG | 0.584953 | 5.3:+31943690 | None:intergenic |
| ACCATTGAGGATAGTAGAGA+CGG | 0.587187 | 5.3:-31943160 | MS.gene054660:CDS |
| CATTTGAAAATGAAATGAAG+TGG | 0.592024 | 5.3:-31943540 | MS.gene054660:CDS |
| TGAATGATGGACTACAAGGA+TGG | 0.595944 | 5.3:-31944320 | MS.gene054660:CDS |
| CTGCAGGTGATGTTGTCGAT+CGG | 0.596803 | 5.3:-31942720 | MS.gene054660:CDS |
| GTAGAGCAATAATACTTCTG+CGG | 0.599674 | 5.3:-31943910 | MS.gene054660:intron |
| GATCATCCCAAAATATATTG+TGG | 0.599802 | 5.3:+31943425 | None:intergenic |
| AGTGGCGCGAAGGGTATCAA+GGG | 0.605278 | 5.3:+31943006 | None:intergenic |
| ATGCTGGTCCATGCTTAAGG+GGG | 0.608093 | 5.3:-31944061 | MS.gene054660:CDS |
| ATGATTCCTCCATTATACTG+AGG | 0.608257 | 5.3:+31944357 | None:intergenic |
| CTTCGAGCAGGTTCTTAGAG+AGG | 0.610309 | 5.3:-31942845 | MS.gene054660:CDS |
| TTTCCATTTCGTAGTCGCCG+TGG | 0.612939 | 5.3:+31942623 | None:intergenic |
| TAACTTGGCAGGCCCGCAAG+AGG | 0.615535 | 5.3:-31943729 | MS.gene054660:intron |
| GCAGTAGTCAAAACAACCAA+AGG | 0.615768 | 5.3:-31944120 | MS.gene054660:CDS |
| TTGACGCTGATGTGATGCTA+CGG | 0.617241 | 5.3:-31943480 | MS.gene054660:CDS |
| AACCATTCACAGAAAAGCAA+TGG | 0.617386 | 5.3:-31943860 | MS.gene054660:CDS |
| GAATGAATATAATACCATTG+AGG | 0.618665 | 5.3:-31943173 | MS.gene054660:CDS |
| GATCCATATTGGCAAACCAG+TGG | 0.621061 | 5.3:+31942988 | None:intergenic |
| CAAAAGCCTCAGTATAATGG+AGG | 0.621253 | 5.3:-31944363 | MS.gene054660:CDS |
| TTCAAGCCGTTGACGAACAA+GGG | 0.621402 | 5.3:-31943696 | MS.gene054660:CDS |
| GATCGGCTGATCAATGAATG+GGG | 0.622857 | 5.3:-31942703 | MS.gene054660:CDS |
| TGGACAGCGTGGTCGCCACA+AGG | 0.629546 | 5.3:-31942787 | MS.gene054660:CDS |
| CATTCACAGAAAAGCAATGG+AGG | 0.635054 | 5.3:-31943857 | MS.gene054660:CDS |
| GGATTCAGGGCATTATAATG+TGG | 0.640941 | 5.3:-31942807 | MS.gene054660:CDS |
| TGCTGGTCCATGCTTAAGGG+GGG | 0.652331 | 5.3:-31944060 | MS.gene054660:CDS |
| AAATGAAATGAAGTGGTACA+CGG | 0.669668 | 5.3:-31943533 | MS.gene054660:CDS |
| TTCTGAGAGACACTATCATG+TGG | 0.671533 | 5.3:+31944219 | None:intergenic |
| TCCATTGTACCAAGATACAA+GGG | 0.676119 | 5.3:-31943328 | MS.gene054660:CDS |
| GCATTATAATGTGGACAGCG+TGG | 0.676144 | 5.3:-31942798 | MS.gene054660:CDS |
| ATCGGCTGATCAATGAATGG+GGG | 0.677429 | 5.3:-31942702 | MS.gene054660:CDS |
| CTACGGTATGCAAAGAAACA+CGG | 0.679684 | 5.3:-31943463 | MS.gene054660:CDS |
| GACTCAAGTCCAATTCCAAG+AGG | 0.679929 | 5.3:+31943073 | None:intergenic |
| CAAATCCTATAACAACCTTG+TGG | 0.682143 | 5.3:+31942772 | None:intergenic |
| GTAGGATGACACAAAGCACA+AGG | 0.692479 | 5.3:+31945704 | None:intergenic |
| GTAGTCGCCGTGGAAAAGGG+AGG | 0.696262 | 5.3:+31942633 | None:intergenic |
| TACACGGATGAATATGCACA+AGG | 0.712550 | 5.3:-31943517 | MS.gene054660:CDS |
| ACGGTTTATCAACCCCACCA+AGG | 0.719550 | 5.3:-31943141 | MS.gene054660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTTATTCAATTAAGA+TGG | - | chr5.3:31942713-31942732 | MS.gene054660:CDS | 10.0% |
| !! | AAACTAATTATCATACTTTA+AGG | + | chr5.3:31942836-31942855 | None:intergenic | 15.0% |
| !! | ATATCATAGGAAAATAAAAA+TGG | + | chr5.3:31943632-31943651 | None:intergenic | 15.0% |
| !! | TATCATAGGAAAATAAAAAT+GGG | + | chr5.3:31943631-31943650 | None:intergenic | 15.0% |
| !! | TCATCAAATTATTATATCAT+AGG | + | chr5.3:31943645-31943664 | None:intergenic | 15.0% |
| !! | TCTTATTAAATGATAAACTA+CGG | - | chr5.3:31944266-31944285 | MS.gene054660:CDS | 15.0% |
| !!! | AGAATAAAATTGATAGTTAT+AGG | - | chr5.3:31943073-31943092 | MS.gene054660:CDS | 15.0% |
| !!! | TGTTTAATTCTTTAAAATGA+TGG | - | chr5.3:31944296-31944315 | MS.gene054660:CDS | 15.0% |
| !!! | TTCATTATTTTCAATATTAG+CGG | - | chr5.3:31943292-31943311 | MS.gene054660:CDS | 15.0% |
| !! | AGGATTGTATTATTCTTTAT+CGG | - | chr5.3:31944053-31944072 | MS.gene054660:CDS | 20.0% |
| !! | CTTATTAAATGATAAACTAC+GGG | - | chr5.3:31944267-31944286 | MS.gene054660:CDS | 20.0% |
| !! | TAACAAGTTTAATTCTAACT+TGG | - | chr5.3:31944490-31944509 | MS.gene054660:CDS | 20.0% |
| !!! | AAAACAAACTATTGATGATT+TGG | - | chr5.3:31943192-31943211 | MS.gene054660:CDS | 20.0% |
| !!! | AAACAAACTATTGATGATTT+GGG | - | chr5.3:31943193-31943212 | MS.gene054660:CDS | 20.0% |
| !!! | AATTTTTTTGTTACCTGATT+AGG | + | chr5.3:31945296-31945315 | None:intergenic | 20.0% |
| !!! | GTTTAATTTATATGCATTGT+CGG | + | chr5.3:31945322-31945341 | None:intergenic | 20.0% |
| !!! | TTTAAAACAGAGATTTCAAT+CGG | - | chr5.3:31943167-31943186 | MS.gene054660:CDS | 20.0% |
| ! | AAAAAAAAACATGTTACCAC+AGG | - | chr5.3:31943701-31943720 | MS.gene054660:CDS | 25.0% |
| ! | AAAAAGAAAAAGAACAGAAG+AGG | + | chr5.3:31943130-31943149 | None:intergenic | 25.0% |
| ! | AAAACTAATTGAGGTTCAAA+TGG | + | chr5.3:31943486-31943505 | None:intergenic | 25.0% |
| ! | ACAACCAAAGGATTTAAATT+TGG | - | chr5.3:31944126-31944145 | MS.gene054660:CDS | 25.0% |
| ! | ACATTATTATTCTTCTTGAG+AGG | + | chr5.3:31945645-31945664 | None:intergenic | 25.0% |
| ! | ATAGAATACAGAGAATCATT+CGG | - | chr5.3:31943958-31943977 | MS.gene054660:intron | 25.0% |
| ! | CATTATTATTCTTCTTGAGA+GGG | + | chr5.3:31945644-31945663 | None:intergenic | 25.0% |
| ! | CATTTGAAAATGAAATGAAG+TGG | - | chr5.3:31944694-31944713 | MS.gene054660:intron | 25.0% |
| ! | GAATGAATATAATACCATTG+AGG | - | chr5.3:31945061-31945080 | MS.gene054660:intron | 25.0% |
| ! | TCTTCTCTTATATTCGATAT+CGG | + | chr5.3:31942639-31942658 | None:intergenic | 25.0% |
| ! | TTTATGCATATTCTAAATGC+TGG | - | chr5.3:31944157-31944176 | MS.gene054660:intron | 25.0% |
| !! | AATAATACAATCCTTTTCGT+AGG | + | chr5.3:31944047-31944066 | None:intergenic | 25.0% |
| !! | CTTCATTTCATTTTCAAATG+TGG | + | chr5.3:31944694-31944713 | None:intergenic | 25.0% |
| !! | GCATTTAGAATATGCATAAA+TGG | + | chr5.3:31944157-31944176 | None:intergenic | 25.0% |
| !! | TATTTTCAATATTAGCGGTA+TGG | - | chr5.3:31943297-31943316 | MS.gene054660:CDS | 25.0% |
| !! | TTTGAAACCAAAACTAATTG+AGG | + | chr5.3:31943495-31943514 | None:intergenic | 25.0% |
| !! | TTTGAATCTCTTTGATCTTT+TGG | + | chr5.3:31945124-31945143 | None:intergenic | 25.0% |
| !!! | ATTTGAACCTCAATTAGTTT+TGG | - | chr5.3:31943485-31943504 | MS.gene054660:CDS | 25.0% |
| !!! | TGACTCATTTTTATCTTGAA+AGG | - | chr5.3:31943780-31943799 | MS.gene054660:intron | 25.0% |
| !!! | TTTTCACTTATGATTTGTGT+AGG | - | chr5.3:31945359-31945378 | MS.gene054660:intron | 25.0% |
| AAAATCTAACAGCTAGACTA+TGG | + | chr5.3:31942921-31942940 | None:intergenic | 30.0% | |
| AAATGAAATGAAGTGGTACA+CGG | - | chr5.3:31944701-31944720 | MS.gene054660:intron | 30.0% | |
| AAGTTTAATTCTAACTTGGC+AGG | - | chr5.3:31944494-31944513 | MS.gene054660:CDS | 30.0% | |
| ACAATATTGCATATCAGCAT+TGG | - | chr5.3:31944646-31944665 | MS.gene054660:intron | 30.0% | |
| ACCAAAGGATTTAAATTTGG+TGG | - | chr5.3:31944129-31944148 | MS.gene054660:CDS | 30.0% | |
| ACCACCAAATTTAAATCCTT+TGG | + | chr5.3:31944133-31944152 | None:intergenic | 30.0% | |
| ATAATACTTCTGCGGAAATT+TGG | - | chr5.3:31944332-31944351 | MS.gene054660:CDS | 30.0% | |
| ATCCTAAATACCAACCTTAT+TGG | - | chr5.3:31944829-31944848 | MS.gene054660:intron | 30.0% | |
| CAGTGTAACGCTTATAAAAA+TGG | + | chr5.3:31943249-31943268 | None:intergenic | 30.0% | |
| GATCATCCCAAAATATATTG+TGG | + | chr5.3:31944812-31944831 | None:intergenic | 30.0% | |
| GTAAGAGATATACTTGCATT+TGG | + | chr5.3:31944573-31944592 | None:intergenic | 30.0% | |
| GTATATCTCTTACAATGAAG+AGG | - | chr5.3:31944580-31944599 | MS.gene054660:intron | 30.0% | |
| TAATACTTCTGCGGAAATTT+GGG | - | chr5.3:31944333-31944352 | MS.gene054660:CDS | 30.0% | |
| TCCTAAATACCAACCTTATT+GGG | - | chr5.3:31944830-31944849 | MS.gene054660:intron | 30.0% | |
| TCTAATTCAGTGATCCATAT+TGG | + | chr5.3:31945260-31945279 | None:intergenic | 30.0% | |
| TTCATCCAAAAGTCGAATTA+GGG | - | chr5.3:31943441-31943460 | MS.gene054660:CDS | 30.0% | |
| TTGACATGAACCATACATTA+GGG | + | chr5.3:31942971-31942990 | None:intergenic | 30.0% | |
| TTTCATCCAAAAGTCGAATT+AGG | - | chr5.3:31943440-31943459 | MS.gene054660:CDS | 30.0% | |
| ! | AAAAACCCTAATTCGACTTT+TGG | + | chr5.3:31943449-31943468 | None:intergenic | 30.0% |
| ! | CGTTCTTTGAAAGTAAACTA+GGG | - | chr5.3:31944973-31944992 | MS.gene054660:intron | 30.0% |
| ! | TAGAGGCCACAATATATTTT+GGG | - | chr5.3:31944803-31944822 | MS.gene054660:intron | 30.0% |
| ! | TCGTTCTTTGAAAGTAAACT+AGG | - | chr5.3:31944972-31944991 | MS.gene054660:intron | 30.0% |
| ! | TGTATTATTCTTTATCGGCT+TGG | - | chr5.3:31944058-31944077 | MS.gene054660:CDS | 30.0% |
| ! | TTAGAGGCCACAATATATTT+TGG | - | chr5.3:31944802-31944821 | MS.gene054660:intron | 30.0% |
| ! | TTGATCTTTTGGATATACCT+TGG | + | chr5.3:31945113-31945132 | None:intergenic | 30.0% |
| ! | TTTTTGTTACCTGATTAGGT+TGG | + | chr5.3:31945292-31945311 | None:intergenic | 30.0% |
| !! | TCAAGAACAAAGTATCGAAA+AGG | - | chr5.3:31944405-31944424 | MS.gene054660:intron | 30.0% |
| AAAAACCCGGAATTGAATGA+TGG | - | chr5.3:31943901-31943920 | MS.gene054660:CDS | 35.0% | |
| AACCATTCACAGAAAAGCAA+TGG | - | chr5.3:31944374-31944393 | MS.gene054660:CDS | 35.0% | |
| AAGAAAAAGAACAGAAGAGG+TGG | + | chr5.3:31943127-31943146 | None:intergenic | 35.0% | |
| ACAATAACCCTAATGAAGAG+TGG | + | chr5.3:31942580-31942599 | None:intergenic | 35.0% | |
| AGACCAAAATGGATACTTTG+AGG | - | chr5.3:31945578-31945597 | MS.gene054660:intron | 35.0% | |
| ATCATTCGGCAACAAATTTG+TGG | - | chr5.3:31943972-31943991 | MS.gene054660:intron | 35.0% | |
| ATGATTCCTCCATTATACTG+AGG | + | chr5.3:31943880-31943899 | None:intergenic | 35.0% | |
| CAAATCCTATAACAACCTTG+TGG | + | chr5.3:31945465-31945484 | None:intergenic | 35.0% | |
| CAGAAGATTTACCTACGAAA+AGG | - | chr5.3:31944033-31944052 | MS.gene054660:CDS | 35.0% | |
| GCTGATATGCAATATTGTTC+AGG | + | chr5.3:31944644-31944663 | None:intergenic | 35.0% | |
| GTAGAGCAATAATACTTCTG+CGG | - | chr5.3:31944324-31944343 | MS.gene054660:CDS | 35.0% | |
| GTTGACATGAACCATACATT+AGG | + | chr5.3:31942972-31942991 | None:intergenic | 35.0% | |
| TCCATTGTACCAAGATACAA+GGG | - | chr5.3:31944906-31944925 | MS.gene054660:intron | 35.0% | |
| TCTCTTACAATGAAGAGGTA+TGG | - | chr5.3:31944585-31944604 | MS.gene054660:intron | 35.0% | |
| TCTCTTATATTCGATATCGG+AGG | + | chr5.3:31942636-31942655 | None:intergenic | 35.0% | |
| TGGAGGAATCATAAAAAACC+CGG | - | chr5.3:31943888-31943907 | MS.gene054660:CDS | 35.0% | |
| TGTAGTCCATCATTCAATTC+CGG | + | chr5.3:31943910-31943929 | None:intergenic | 35.0% | |
| TTCAGCTAGGATGTTTAATG+AGG | - | chr5.3:31945004-31945023 | MS.gene054660:intron | 35.0% | |
| TTCCATTGTACCAAGATACA+AGG | - | chr5.3:31944905-31944924 | MS.gene054660:intron | 35.0% | |
| TTTCAAAGAACGAGAAATGC+AGG | + | chr5.3:31944965-31944984 | None:intergenic | 35.0% | |
| ! | ACTTATGATTTGTGTAGGCA+TGG | - | chr5.3:31945364-31945383 | MS.gene054660:intron | 35.0% |
| ! | ATCTTTTGGATATACCTTGG+TGG | + | chr5.3:31945110-31945129 | None:intergenic | 35.0% |
| ! | CATTATACTGAGGCTTTTGT+GGG | + | chr5.3:31943870-31943889 | None:intergenic | 35.0% |
| ! | CTAGCTGTTAGATTTTCATC+CGG | - | chr5.3:31942925-31942944 | MS.gene054660:intron | 35.0% |
| ! | TAGCTGTTAGATTTTCATCC+GGG | - | chr5.3:31942926-31942945 | MS.gene054660:intron | 35.0% |
| ! | TAGGGCAAAAATTTTCAGCT+AGG | - | chr5.3:31944991-31945010 | MS.gene054660:intron | 35.0% |
| ! | TCTTTTGGATATACCTTGGT+GGG | + | chr5.3:31945109-31945128 | None:intergenic | 35.0% |
| ! | TTGTTTTCGACTTCAGTGTT+TGG | - | chr5.3:31943840-31943859 | MS.gene054660:CDS | 35.0% |
| !! | AAGAGGTATGGTTTTCCATT+TGG | - | chr5.3:31944597-31944616 | MS.gene054660:intron | 35.0% |
| !! | ACCCAATAAGGTTGGTATTT+AGG | + | chr5.3:31944834-31944853 | None:intergenic | 35.0% |
| !! | GAATTGAATGATGGACTACA+AGG | - | chr5.3:31943910-31943929 | MS.gene054660:intron | 35.0% |
| !! | GTTCAGGATGTTTTTGTTGA+TGG | + | chr5.3:31944628-31944647 | None:intergenic | 35.0% |
| AAATGCTGGTCCATGCTTAA+GGG | - | chr5.3:31944171-31944190 | MS.gene054660:intron | 40.0% | |
| AACTACTACTTTCCTCTTGC+GGG | + | chr5.3:31944520-31944539 | None:intergenic | 40.0% | |
| AATTTCAAGAACTTGCCTGC+AGG | - | chr5.3:31945498-31945517 | MS.gene054660:intron | 40.0% | |
| ACCATTGAGGATAGTAGAGA+CGG | - | chr5.3:31945074-31945093 | MS.gene054660:intron | 40.0% | |
| ACGAATCTCCACTCTTCATT+AGG | - | chr5.3:31942569-31942588 | MS.gene054660:CDS | 40.0% | |
| AGATACAAGGGACAGCTTAT+TGG | - | chr5.3:31944918-31944937 | MS.gene054660:intron | 40.0% | |
| ATAAGCTGTCCCTTGTATCT+TGG | + | chr5.3:31944918-31944937 | None:intergenic | 40.0% | |
| ATCCGAACTCCACATTACTA+TGG | + | chr5.3:31943404-31943423 | None:intergenic | 40.0% | |
| ATTATAATGCCCTGAATCCC+AGG | + | chr5.3:31945426-31945445 | None:intergenic | 40.0% | |
| CAAAAGCCTCAGTATAATGG+AGG | - | chr5.3:31943871-31943890 | MS.gene054660:CDS | 40.0% | |
| CATTCACAGAAAAGCAATGG+AGG | - | chr5.3:31944377-31944396 | MS.gene054660:CDS | 40.0% | |
| CCACAAAAGCCTCAGTATAA+TGG | - | chr5.3:31943868-31943887 | MS.gene054660:CDS | 40.0% | |
| CGAATCTCCACTCTTCATTA+GGG | - | chr5.3:31942570-31942589 | MS.gene054660:CDS | 40.0% | |
| CTACGGTATGCAAAGAAACA+CGG | - | chr5.3:31944771-31944790 | MS.gene054660:intron | 40.0% | |
| CTCATATAAGGCAAGTTAGG+AGG | + | chr5.3:31945203-31945222 | None:intergenic | 40.0% | |
| CTTTGTGTCATCCTACTTTC+AGG | - | chr5.3:31942537-31942556 | MS.gene054660:CDS | 40.0% | |
| GAACTACTACTTTCCTCTTG+CGG | + | chr5.3:31944521-31944540 | None:intergenic | 40.0% | |
| GACAGTGAAGAAACCCAATA+AGG | + | chr5.3:31944846-31944865 | None:intergenic | 40.0% | |
| GACGTTCGCACTATAATCAT+AGG | + | chr5.3:31943747-31943766 | None:intergenic | 40.0% | |
| GAGTTTCGAACCCTAATGTA+TGG | - | chr5.3:31942958-31942977 | MS.gene054660:CDS | 40.0% | |
| GCAGTAGTCAAAACAACCAA+AGG | - | chr5.3:31944114-31944133 | MS.gene054660:CDS | 40.0% | |
| GCTCTCATATAAGGCAAGTT+AGG | + | chr5.3:31945206-31945225 | None:intergenic | 40.0% | |
| GTAGTCCATCATTCAATTCC+GGG | + | chr5.3:31943909-31943928 | None:intergenic | 40.0% | |
| GTCCATAGTAATGTGGAGTT+CGG | - | chr5.3:31943399-31943418 | MS.gene054660:CDS | 40.0% | |
| GTGAAGAAACCCAATAAGGT+TGG | + | chr5.3:31944842-31944861 | None:intergenic | 40.0% | |
| GTGGTTACAAACCTGAAAGT+AGG | + | chr5.3:31942551-31942570 | None:intergenic | 40.0% | |
| TAAATGCTGGTCCATGCTTA+AGG | - | chr5.3:31944170-31944189 | MS.gene054660:intron | 40.0% | |
| TAATGAAGAGTGGAGATTCG+TGG | + | chr5.3:31942570-31942589 | None:intergenic | 40.0% | |
| TACACGGATGAATATGCACA+AGG | - | chr5.3:31944717-31944736 | MS.gene054660:intron | 40.0% | |
| TCAACTGAGTTATGCTTGCA+GGG | - | chr5.3:31942987-31943006 | MS.gene054660:CDS | 40.0% | |
| TCCACATTACTATGGACGTA+AGG | + | chr5.3:31943396-31943415 | None:intergenic | 40.0% | |
| TCCCTTGTATCTTGGTACAA+TGG | + | chr5.3:31944910-31944929 | None:intergenic | 40.0% | |
| TCCTTACGTCCATAGTAATG+TGG | - | chr5.3:31943392-31943411 | MS.gene054660:CDS | 40.0% | |
| ! | AAACACGGTATTGCTGTTAG+AGG | - | chr5.3:31944786-31944805 | MS.gene054660:intron | 40.0% |
| ! | CATCTAAAACGTACTCTCTC+AGG | + | chr5.3:31942758-31942777 | None:intergenic | 40.0% |
| ! | CCATTATACTGAGGCTTTTG+TGG | + | chr5.3:31943871-31943890 | None:intergenic | 40.0% |
| ! | CTTTTGGATATACCTTGGTG+GGG | + | chr5.3:31945108-31945127 | None:intergenic | 40.0% |
| ! | GGATTCAGGGCATTATAATG+TGG | - | chr5.3:31945427-31945446 | MS.gene054660:intron | 40.0% |
| ! | GGTCTTATAGCAGATACAAC+AGG | - | chr5.3:31944195-31944214 | MS.gene054660:intron | 40.0% |
| ! | TTCTGAGAGACACTATCATG+TGG | + | chr5.3:31944018-31944037 | None:intergenic | 40.0% |
| !! | AGGCCTCAAAGTATCCATTT+TGG | + | chr5.3:31945584-31945603 | None:intergenic | 40.0% |
| !! | ATCAGCATTGGTTTGCATCT+AGG | - | chr5.3:31944658-31944677 | MS.gene054660:intron | 40.0% |
| !! | CTCCATTGCTTTTCTGTGAA+TGG | + | chr5.3:31944379-31944398 | None:intergenic | 40.0% |
| !! | TGAATGATGGACTACAAGGA+TGG | - | chr5.3:31943914-31943933 | MS.gene054660:intron | 40.0% |
| !! | TTGGTTTGCATCTAGGTTCA+CGG | - | chr5.3:31944665-31944684 | MS.gene054660:intron | 40.0% |
| !! | TTGTTGATGGCACTTCCAAA+TGG | + | chr5.3:31944615-31944634 | None:intergenic | 40.0% |
| AATGCTGGTCCATGCTTAAG+GGG | - | chr5.3:31944172-31944191 | MS.gene054660:intron | 45.0% | |
| ACAAGGGACAGCTTATTGGT+TGG | - | chr5.3:31944922-31944941 | MS.gene054660:intron | 45.0% | |
| ACATTCTCATCCTGGGATTC+AGG | - | chr5.3:31945413-31945432 | MS.gene054660:intron | 45.0% | |
| ACCGTCTCTACTATCCTCAA+TGG | + | chr5.3:31945078-31945097 | None:intergenic | 45.0% | |
| ATCGGCTGATCAATGAATGG+GGG | - | chr5.3:31945532-31945551 | MS.gene054660:intron | 45.0% | |
| CATTCTCATCCTGGGATTCA+GGG | - | chr5.3:31945414-31945433 | MS.gene054660:intron | 45.0% | |
| CGATCGGCTGATCAATGAAT+GGG | - | chr5.3:31945530-31945549 | MS.gene054660:intron | 45.0% | |
| CTACAAGGATGGACAGCATT+TGG | - | chr5.3:31943925-31943944 | MS.gene054660:intron | 45.0% | |
| GACTCAAGTCCAATTCCAAG+AGG | + | chr5.3:31945164-31945183 | None:intergenic | 45.0% | |
| GATCCATATTGGCAAACCAG+TGG | + | chr5.3:31945249-31945268 | None:intergenic | 45.0% | |
| GATCGGCTGATCAATGAATG+GGG | - | chr5.3:31945531-31945550 | MS.gene054660:intron | 45.0% | |
| GCAAGTTAGGAGGACTACTA+GGG | + | chr5.3:31945193-31945212 | None:intergenic | 45.0% | |
| GCATTATAATGTGGACAGCG+TGG | - | chr5.3:31945436-31945455 | MS.gene054660:intron | 45.0% | |
| GGGGGAGAGCAAAAATATCA+GGG | - | chr5.3:31945550-31945569 | MS.gene054660:intron | 45.0% | |
| GTAGGATGACACAAAGCACA+AGG | + | chr5.3:31942533-31942552 | None:intergenic | 45.0% | |
| GTCAACTGAGTTATGCTTGC+AGG | - | chr5.3:31942986-31943005 | MS.gene054660:CDS | 45.0% | |
| GTCCAATTCCAAGAGGCAAT+CGG | + | chr5.3:31945157-31945176 | None:intergenic | 45.0% | |
| TATAAGACCCCCCTTAAGCA+TGG | + | chr5.3:31944184-31944203 | None:intergenic | 45.0% | |
| TCAAGGGCAGCTCTCATATA+AGG | + | chr5.3:31945215-31945234 | None:intergenic | 45.0% | |
| TCAGGGATGACAGACCAAAA+TGG | - | chr5.3:31945567-31945586 | MS.gene054660:intron | 45.0% | |
| TCGATCGGCTGATCAATGAA+TGG | - | chr5.3:31945529-31945548 | MS.gene054660:intron | 45.0% | |
| TGCTTCAGCTTCAAAACCTG+TGG | + | chr5.3:31943720-31943739 | None:intergenic | 45.0% | |
| TGGGGGAGAGCAAAAATATC+AGG | - | chr5.3:31945549-31945568 | MS.gene054660:intron | 45.0% | |
| TTAACGCTGCAGTCGAAAAC+AGG | - | chr5.3:31944877-31944896 | MS.gene054660:intron | 45.0% | |
| TTCAAGCCGTTGACGAACAA+GGG | - | chr5.3:31944538-31944557 | MS.gene054660:intron | 45.0% | |
| TTGACGCTGATGTGATGCTA+CGG | - | chr5.3:31944754-31944773 | MS.gene054660:intron | 45.0% | |
| ! | CAAGGGACAGCTTATTGGTT+GGG | - | chr5.3:31944923-31944942 | MS.gene054660:intron | 45.0% |
| !!! | GTTTTGACTACTGCTGTGAC+AGG | + | chr5.3:31944108-31944127 | None:intergenic | 45.0% |
| !!! | AATTTTTTCAATTAATAAAT+AGG | + | chr5.3:31943519-31943538 | None:intergenic | 5.0% |
| ACGGTTTATCAACCCCACCA+AGG | - | chr5.3:31945093-31945112 | MS.gene054660:intron | 50.0% | |
| ACTGCAGCGTTAAGCTGGTT+CGG | + | chr5.3:31944870-31944889 | None:intergenic | 50.0% | |
| AGCCGATTGCCTCTTGGAAT+TGG | - | chr5.3:31945152-31945171 | MS.gene054660:intron | 50.0% | |
| ATGCTGGTCCATGCTTAAGG+GGG | - | chr5.3:31944173-31944192 | MS.gene054660:intron | 50.0% | |
| CTGCAGGTGATGTTGTCGAT+CGG | - | chr5.3:31945514-31945533 | MS.gene054660:intron | 50.0% | |
| CTTCGAGCAGGTTCTTAGAG+AGG | - | chr5.3:31945389-31945408 | MS.gene054660:intron | 50.0% | |
| GGCAAGTTAGGAGGACTACT+AGG | + | chr5.3:31945194-31945213 | None:intergenic | 50.0% | |
| GGCTTGGATACAAGTGAGTG+AGG | - | chr5.3:31944074-31944093 | MS.gene054660:CDS | 50.0% | |
| GGTCGCCACAAGGTTGTTAT+AGG | - | chr5.3:31945457-31945476 | MS.gene054660:intron | 50.0% | |
| GTGAATAGCCGATTGCCTCT+TGG | - | chr5.3:31945146-31945165 | MS.gene054660:intron | 50.0% | |
| GTTCAAGCCGTTGACGAACA+AGG | - | chr5.3:31944537-31944556 | MS.gene054660:intron | 50.0% | |
| TCGAAACTCAAGCTCGAACC+CGG | + | chr5.3:31942947-31942966 | None:intergenic | 50.0% | |
| TTCGTAGTCGCCGTGGAAAA+GGG | + | chr5.3:31945607-31945626 | None:intergenic | 50.0% | |
| TTTCCACGGCGACTACGAAA+TGG | - | chr5.3:31945608-31945627 | MS.gene054660:intron | 50.0% | |
| TTTCCATTTCGTAGTCGCCG+TGG | + | chr5.3:31945614-31945633 | None:intergenic | 50.0% | |
| TTTCGACTGCAGCGTTAAGC+TGG | + | chr5.3:31944875-31944894 | None:intergenic | 50.0% | |
| TTTCGTAGTCGCCGTGGAAA+AGG | + | chr5.3:31945608-31945627 | None:intergenic | 50.0% | |
| ! | AGAGAGGCACATTCTCATCC+TGG | - | chr5.3:31945405-31945424 | MS.gene054660:intron | 50.0% |
| ! | AGAGTGCCCTTGTTCGTCAA+CGG | + | chr5.3:31944547-31944566 | None:intergenic | 50.0% |
| ! | GAGAGGCACATTCTCATCCT+GGG | - | chr5.3:31945406-31945425 | MS.gene054660:intron | 50.0% |
| !! | TTTGAGGCCTCCCTTTTCCA+CGG | - | chr5.3:31945594-31945613 | MS.gene054660:intron | 50.0% |
| AGCAGCTGAGCTCTACTTCG+AGG | - | chr5.3:31944218-31944237 | MS.gene054660:CDS | 55.0% | |
| CGATCGACAACATCACCTGC+AGG | + | chr5.3:31945516-31945535 | None:intergenic | 55.0% | |
| CGTCGCAAGCCAACCTAATC+AGG | - | chr5.3:31945280-31945299 | MS.gene054660:intron | 55.0% | |
| GTAGGCATGGTACTTCGAGC+AGG | - | chr5.3:31945377-31945396 | MS.gene054660:intron | 55.0% | |
| TGCTGGTCCATGCTTAAGGG+GGG | - | chr5.3:31944174-31944193 | MS.gene054660:intron | 55.0% | |
| !! | AGTGGCGCGAAGGGTATCAA+GGG | + | chr5.3:31945231-31945250 | None:intergenic | 55.0% |
| !! | GCGCCACTGGTTTGCCAATA+TGG | - | chr5.3:31945243-31945262 | MS.gene054660:intron | 55.0% |
| CTTGATACCCTTCGCGCCAC+TGG | - | chr5.3:31945230-31945249 | MS.gene054660:intron | 60.0% | |
| GTAGTCGCCGTGGAAAAGGG+AGG | + | chr5.3:31945604-31945623 | None:intergenic | 60.0% | |
| TAACTTGGCAGGCCCGCAAG+AGG | - | chr5.3:31944505-31944524 | MS.gene054660:CDS | 60.0% | |
| TGGCAAACCAGTGGCGCGAA+GGG | + | chr5.3:31945240-31945259 | None:intergenic | 60.0% | |
| TTGGCAAACCAGTGGCGCGA+AGG | + | chr5.3:31945241-31945260 | None:intergenic | 60.0% | |
| !! | CAGTGGCGCGAAGGGTATCA+AGG | + | chr5.3:31945232-31945251 | None:intergenic | 60.0% |
| TGGACAGCGTGGTCGCCACA+AGG | - | chr5.3:31945447-31945466 | MS.gene054660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 31942519 | 31945737 | 31942519 | ID=MS.gene054660 |
| chr5.3 | mRNA | 31942519 | 31945737 | 31942519 | ID=MS.gene054660.t1;Parent=MS.gene054660 |
| chr5.3 | exon | 31945698 | 31945737 | 31945698 | ID=MS.gene054660.t1.exon1;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31945698 | 31945737 | 31945698 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| chr5.3 | exon | 31944487 | 31944533 | 31944487 | ID=MS.gene054660.t1.exon2;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31944487 | 31944533 | 31944487 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| chr5.3 | exon | 31944198 | 31944400 | 31944198 | ID=MS.gene054660.t1.exon3;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31944198 | 31944400 | 31944198 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| chr5.3 | exon | 31944017 | 31944164 | 31944017 | ID=MS.gene054660.t1.exon4;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31944017 | 31944164 | 31944017 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| chr5.3 | exon | 31943830 | 31943928 | 31943830 | ID=MS.gene054660.t1.exon5;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31943830 | 31943928 | 31943830 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| chr5.3 | exon | 31942955 | 31943740 | 31942955 | ID=MS.gene054660.t1.exon6;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31942955 | 31943740 | 31942955 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| chr5.3 | exon | 31942519 | 31942875 | 31942519 | ID=MS.gene054660.t1.exon7;Parent=MS.gene054660.t1 |
| chr5.3 | CDS | 31942519 | 31942875 | 31942519 | ID=cds.MS.gene054660.t1;Parent=MS.gene054660.t1 |
| Gene Sequence |
| Protein sequence |
