Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62099.t1 | XP_013453882.1 | 95.7 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.00E+00 | 1117.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62099.t1 | A0A1P8B8F8 | 38.9 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 1.7e-114 | 414.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62099.t1 | A0A072UFN4 | 95.7 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0e+00 | 1117.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99993 | MS.gene62099 | PPI |
| MS.gene62099 | MS.gene59021 | PPI |
| MS.gene62099 | MS.gene003507 | PPI |
| MS.gene054660 | MS.gene62099 | PPI |
| MS.gene62099 | MS.gene032541 | PPI |
| MS.gene62099 | MS.gene68749 | PPI |
| MS.gene62099 | MS.gene063101 | PPI |
| MS.gene044959 | MS.gene62099 | PPI |
| MS.gene62099 | MS.gene68149 | PPI |
| MS.gene062453 | MS.gene62099 | PPI |
| MS.gene014213 | MS.gene62099 | PPI |
| MS.gene52090 | MS.gene62099 | PPI |
| MS.gene62099 | MS.gene75410 | PPI |
| MS.gene62099 | MS.gene53185 | PPI |
| MS.gene62099 | MS.gene90963 | PPI |
| MS.gene74061 | MS.gene62099 | PPI |
| MS.gene057723 | MS.gene62099 | PPI |
| MS.gene62099 | MS.gene057723 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62099.t1 | MTR_5g049180 | 95.722 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1130 |
| MS.gene62099.t1 | MTR_7g024420 | 81.350 | 563 | 105 | 0 | 1 | 563 | 1 | 563 | 0.0 | 956 |
| MS.gene62099.t1 | MTR_4g074070 | 73.070 | 557 | 150 | 0 | 1 | 557 | 1 | 557 | 0.0 | 881 |
| MS.gene62099.t1 | MTR_1g106200 | 47.689 | 541 | 278 | 3 | 9 | 544 | 18 | 558 | 0.0 | 541 |
| MS.gene62099.t1 | MTR_1g106790 | 47.026 | 538 | 279 | 4 | 8 | 540 | 17 | 553 | 0.0 | 532 |
| MS.gene62099.t1 | MTR_1g106910 | 47.038 | 557 | 287 | 5 | 4 | 553 | 10 | 565 | 0.0 | 530 |
| MS.gene62099.t1 | MTR_1g106770 | 47.500 | 520 | 269 | 3 | 29 | 544 | 4 | 523 | 7.13e-178 | 517 |
| MS.gene62099.t1 | MTR_1g106200 | 43.068 | 541 | 270 | 4 | 9 | 544 | 24 | 531 | 6.24e-160 | 471 |
| MS.gene62099.t1 | MTR_3g117800 | 39.781 | 548 | 295 | 11 | 9 | 548 | 1 | 521 | 5.29e-130 | 394 |
| MS.gene62099.t1 | MTR_3g117800 | 43.231 | 458 | 249 | 7 | 99 | 548 | 16 | 470 | 4.62e-126 | 382 |
| MS.gene62099.t1 | MTR_3g117800 | 43.880 | 433 | 234 | 5 | 122 | 548 | 11 | 440 | 4.16e-123 | 373 |
| MS.gene62099.t1 | MTR_1g017020 | 30.474 | 548 | 325 | 15 | 35 | 543 | 353 | 883 | 1.75e-67 | 238 |
| MS.gene62099.t1 | MTR_3g103610 | 30.241 | 539 | 308 | 18 | 43 | 537 | 200 | 714 | 3.00e-64 | 226 |
| MS.gene62099.t1 | MTR_4g121520 | 44.059 | 202 | 87 | 1 | 305 | 506 | 223 | 398 | 8.66e-46 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62099.t1 | AT4G33840 | 56.932 | 541 | 223 | 5 | 16 | 548 | 19 | 557 | 0.0 | 660 |
| MS.gene62099.t1 | AT4G33830 | 55.935 | 556 | 236 | 6 | 7 | 557 | 11 | 562 | 0.0 | 649 |
| MS.gene62099.t1 | AT4G33860 | 56.604 | 530 | 223 | 4 | 16 | 540 | 19 | 546 | 0.0 | 645 |
| MS.gene62099.t1 | AT4G33810 | 38.899 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 8.68e-139 | 418 |
| MS.gene62099.t1 | AT4G33810 | 38.899 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 8.68e-139 | 418 |
| MS.gene62099.t1 | AT4G33810 | 38.899 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 8.68e-139 | 418 |
| MS.gene62099.t1 | AT4G33810 | 42.767 | 477 | 262 | 5 | 87 | 553 | 38 | 513 | 4.88e-136 | 409 |
| MS.gene62099.t1 | AT4G33810 | 42.767 | 477 | 262 | 5 | 87 | 553 | 38 | 513 | 4.88e-136 | 409 |
| MS.gene62099.t1 | AT4G33820 | 37.824 | 579 | 317 | 9 | 5 | 561 | 8 | 565 | 1.74e-135 | 409 |
| MS.gene62099.t1 | AT4G38650 | 38.951 | 534 | 287 | 10 | 22 | 542 | 34 | 541 | 3.69e-129 | 393 |
| MS.gene62099.t1 | AT2G14690 | 35.379 | 554 | 313 | 8 | 18 | 553 | 28 | 554 | 5.40e-118 | 364 |
| MS.gene62099.t1 | AT4G38300 | 44.747 | 257 | 130 | 2 | 192 | 448 | 12 | 256 | 1.60e-72 | 236 |
| MS.gene62099.t1 | AT1G58370 | 29.650 | 543 | 325 | 16 | 35 | 537 | 362 | 887 | 5.92e-66 | 234 |
| MS.gene62099.t1 | AT1G58370 | 29.650 | 543 | 325 | 16 | 35 | 537 | 390 | 915 | 1.17e-65 | 233 |
| MS.gene62099.t1 | AT1G10050 | 29.336 | 542 | 332 | 17 | 43 | 546 | 550 | 1078 | 7.31e-61 | 220 |
| MS.gene62099.t1 | AT1G10050 | 29.151 | 542 | 333 | 17 | 43 | 546 | 518 | 1046 | 8.16e-61 | 220 |
| MS.gene62099.t1 | AT1G10050 | 29.151 | 542 | 333 | 17 | 43 | 546 | 518 | 1046 | 8.16e-61 | 220 |
| MS.gene62099.t1 | AT4G08160 | 28.102 | 548 | 341 | 15 | 35 | 540 | 190 | 726 | 6.93e-60 | 214 |
| MS.gene62099.t1 | AT4G08160 | 29.079 | 478 | 288 | 13 | 35 | 471 | 190 | 657 | 3.88e-56 | 202 |
Find 148 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATCTTCTTGATATATTT+TGG | 0.098842 | 5.1:+37977743 | None:intergenic |
| ATAATACTTCTGTTGAAATT+TGG | 0.134584 | 5.1:-37978603 | MS.gene62099:CDS |
| TCAGAGGCCACAATATATTT+TGG | 0.162947 | 5.1:-37978051 | MS.gene62099:CDS |
| ACAACTGAAGGATTTAAATT+TGG | 0.187136 | 5.1:-37978847 | MS.gene62099:CDS |
| CTGCCACTGGTTTGCCAATA+TGG | 0.191945 | 5.1:-37977610 | MS.gene62099:CDS |
| GCAATAGTGCATATCATTAT+TGG | 0.208863 | 5.1:-37978207 | MS.gene62099:CDS |
| CAGAAAATTTACCTACAAAA+TGG | 0.235874 | 5.1:-37983744 | MS.gene62099:CDS |
| AATAGAACATAGAGAATCTT+TGG | 0.248709 | 5.1:-37983820 | MS.gene62099:CDS |
| GGATTGCATTATTCTTTATC+TGG | 0.257416 | 5.1:-37983723 | MS.gene62099:intron |
| ATGTGGTTGATTTCTGTTAT+TGG | 0.257701 | 5.1:+37983779 | None:intergenic |
| ACAATTCGGCTCAGCGTAAA+TGG | 0.263557 | 5.1:+37978819 | None:intergenic |
| CTATGTGTCATCCTACTTGC+AGG | 0.291154 | 5.1:-37984484 | MS.gene62099:intron |
| AATGAAGTTCACAACATTGA+TGG | 0.301444 | 5.1:-37977833 | MS.gene62099:CDS |
| AAGCAATTGCCTCTTGGAAT+TGG | 0.301823 | 5.1:-37977701 | MS.gene62099:CDS |
| TGTAGTCCATCATTCAGTTC+TGG | 0.305480 | 5.1:+37983870 | None:intergenic |
| ATCCTCAATACCAACCTTCT+TGG | 0.306095 | 5.1:-37978024 | MS.gene62099:CDS |
| GTAATAGATATTCTTGCATT+TGG | 0.328996 | 5.1:+37978283 | None:intergenic |
| TCGTTCATGGTGGCGGCAGC+TGG | 0.336095 | 5.1:-37975525 | MS.gene62099:CDS |
| GATCTGGATCAGTTCTTTGC+TGG | 0.341901 | 5.1:-37975436 | MS.gene62099:CDS |
| TGCTCGTCAGTGACAGATCT+TGG | 0.342668 | 5.1:-37975484 | MS.gene62099:CDS |
| GAATTGTTGGTCTATGCTTA+AGG | 0.343869 | 5.1:-37978803 | MS.gene62099:CDS |
| TCGAAAACGCCGAGAGATAT+AGG | 0.350837 | 5.1:+37975574 | None:intergenic |
| GCTCAGGATGTATTTGTTCA+TGG | 0.357032 | 5.1:+37978228 | None:intergenic |
| ATCATTATTGGTTCGCATCT+AGG | 0.357864 | 5.1:-37978195 | MS.gene62099:CDS |
| CTACAAGGATGGACAGCATT+TGG | 0.360370 | 5.1:-37983852 | MS.gene62099:CDS |
| GCAATTGCTTATTCCAACTT+TGG | 0.363618 | 5.1:+37977714 | None:intergenic |
| CCATTGTACTGAGGCCTTTG+TGG | 0.366505 | 5.1:+37983909 | None:intergenic |
| CATTGTACTGAGGCCTTTGT+GGG | 0.387812 | 5.1:+37983910 | None:intergenic |
| GTTATCGACTTTACCTGATT+TGG | 0.388943 | 5.1:+37977560 | None:intergenic |
| TCTAATTCAGTGATCCATAT+TGG | 0.391697 | 5.1:+37977596 | None:intergenic |
| ATATTCTTGCATTTGGTAAA+GGG | 0.397992 | 5.1:+37978290 | None:intergenic |
| TGTTGCAAGCCAGCCAAATC+AGG | 0.400763 | 5.1:-37977573 | MS.gene62099:intron |
| CTCGACACCCTTGCTGCCAC+TGG | 0.401901 | 5.1:-37977623 | MS.gene62099:CDS |
| AATGCTGGCACTATGATCAT+AGG | 0.417516 | 5.1:+37984034 | None:intergenic |
| TGGAATAAGCAATTGCCTCT+TGG | 0.419115 | 5.1:-37977707 | MS.gene62099:CDS |
| AGATACAAGGACCAGCTAAT+TGG | 0.419860 | 5.1:-37977935 | MS.gene62099:CDS |
| GATATTCTTGCATTTGGTAA+AGG | 0.422820 | 5.1:+37978289 | None:intergenic |
| TTTCGACTGCATTGTTAAGT+TGG | 0.426420 | 5.1:+37977981 | None:intergenic |
| AATTGTTGGTCTATGCTTAA+GGG | 0.427116 | 5.1:-37978802 | MS.gene62099:CDS |
| GGTTAGTGAAATTTAAATGT+TGG | 0.428157 | 5.1:-37976658 | MS.gene62099:CDS |
| TACAAGGATGGACAGCATTT+GGG | 0.431640 | 5.1:-37983851 | MS.gene62099:CDS |
| ATTACAATTCCTCGGATCCC+TGG | 0.432127 | 5.1:+37977305 | None:intergenic |
| GGTCTCACAGCGGACGCAAC+AGG | 0.436625 | 5.1:-37978778 | MS.gene62099:CDS |
| TTTACGCTGAGCCGAATTGT+TGG | 0.438915 | 5.1:-37978816 | MS.gene62099:CDS |
| ACTGAAGGATTTAAATTTGG+TGG | 0.441063 | 5.1:-37978844 | MS.gene62099:CDS |
| GCTCGTCAGTGACAGATCTT+GGG | 0.445036 | 5.1:-37975483 | MS.gene62099:CDS |
| TCCTCAATACCAACCTTCTT+GGG | 0.445458 | 5.1:-37978023 | MS.gene62099:CDS |
| GCTCTCATGTAAGGCAAGTT+GGG | 0.446579 | 5.1:+37977650 | None:intergenic |
| GGCTCTCATGTAAGGCAAGT+TGG | 0.452068 | 5.1:+37977649 | None:intergenic |
| TCATTCTTTGAAAGTAAACT+AGG | 0.473187 | 5.1:-37977881 | MS.gene62099:CDS |
| ATAGAACATAGAGAATCTTT+GGG | 0.481544 | 5.1:-37983819 | MS.gene62099:CDS |
| ACCCAAGAAGGTTGGTATTG+AGG | 0.486924 | 5.1:+37978022 | None:intergenic |
| TTGGTTCGCATCTAGGTTCA+CGG | 0.486946 | 5.1:-37978188 | MS.gene62099:CDS |
| TAGTTTACTTTCAAAGAATG+AGG | 0.487897 | 5.1:+37977883 | None:intergenic |
| TTGTTCATGGCACTTCCAAA+TGG | 0.489868 | 5.1:+37978241 | None:intergenic |
| ATTTGTGTAGGCAGTGTACT+TGG | 0.490660 | 5.1:-37977357 | MS.gene62099:intron |
| TCGAGGGAGGCTCTCATGTA+AGG | 0.492315 | 5.1:+37977641 | None:intergenic |
| CGACAAACTGATTTATGAGT+GGG | 0.494104 | 5.1:-37977198 | MS.gene62099:CDS |
| CTGCCGCCACCATGAACGAT+GGG | 0.495694 | 5.1:+37975529 | None:intergenic |
| CAAGGACCAGCTAATTGGTT+GGG | 0.496790 | 5.1:-37977930 | MS.gene62099:CDS |
| TTCTTTGCTGGTAAGACTCT+AGG | 0.501078 | 5.1:-37975424 | MS.gene62099:CDS |
| CAGCTCTCTCCTATATCTCT+CGG | 0.501615 | 5.1:-37975583 | MS.gene62099:CDS |
| TAGGAGAGAGCTGGTGCGGA+GGG | 0.503886 | 5.1:+37975593 | None:intergenic |
| TCGACTTTACCTGATTTGGC+TGG | 0.510163 | 5.1:+37977564 | None:intergenic |
| TTAACAATGCAGTCGAAAAG+AGG | 0.510402 | 5.1:-37977976 | MS.gene62099:CDS |
| AATGATATGCACTATTGCTC+AGG | 0.510678 | 5.1:+37978212 | None:intergenic |
| TCTATTACAATGAAGAGGTA+TGG | 0.515108 | 5.1:-37978268 | MS.gene62099:CDS |
| TCAAGAACAGAATATTGAAA+AGG | 0.517817 | 5.1:-37978530 | MS.gene62099:intron |
| CAACATCCCAACCAATTAGC+TGG | 0.523794 | 5.1:+37977924 | None:intergenic |
| AATTTCAAGAATTTGCCTAC+AGG | 0.527179 | 5.1:-37977230 | MS.gene62099:CDS |
| ATAGGAGAGAGCTGGTGCGG+AGG | 0.527773 | 5.1:+37975592 | None:intergenic |
| TTAAGCATAGACCAACAATT+CGG | 0.529114 | 5.1:+37978805 | None:intergenic |
| TTCTGTTGTGTCAAGATACA+AGG | 0.535595 | 5.1:-37977948 | MS.gene62099:CDS |
| GTACTACTACGTTCTTCTTG+CGG | 0.542899 | 5.1:+37978335 | None:intergenic |
| CACGGTGGTGCGATGAGCTG+CGG | 0.544143 | 5.1:-37975619 | MS.gene62099:CDS |
| TTACAATTCCTCGGATCCCT+GGG | 0.547293 | 5.1:+37977306 | None:intergenic |
| GAGAGAGCTTACTTCAATGC+TGG | 0.548545 | 5.1:+37984019 | None:intergenic |
| GGCAGCAAGGGTGTCGAGGG+AGG | 0.552078 | 5.1:+37977628 | None:intergenic |
| AGATAAGAGAGATCCAAAGT+TGG | 0.552172 | 5.1:-37977727 | MS.gene62099:CDS |
| TGGCAAACCAGTGGCAGCAA+GGG | 0.554004 | 5.1:+37977616 | None:intergenic |
| GAATGATTATAATACTATTG+AGG | 0.555610 | 5.1:-37977792 | MS.gene62099:CDS |
| GAGAGCGAAGGTACCCAAGA+AGG | 0.556728 | 5.1:+37978010 | None:intergenic |
| ACTATTGAGGATAGTAGAGA+TGG | 0.560205 | 5.1:-37977779 | MS.gene62099:CDS |
| CAGTGGCAGCAAGGGTGTCG+AGG | 0.563868 | 5.1:+37977624 | None:intergenic |
| CTTGGAGCAAGTTCTTAAAG+AGG | 0.564456 | 5.1:-37977339 | MS.gene62099:CDS |
| GCTGCCGCCACCATGAACGA+TGG | 0.567092 | 5.1:+37975528 | None:intergenic |
| AGTGGCAGCAAGGGTGTCGA+GGG | 0.570712 | 5.1:+37977625 | None:intergenic |
| CTGTCCACATTACAATTCCT+CGG | 0.573241 | 5.1:+37977297 | None:intergenic |
| AAAGAGGCACACTCTCACCC+AGG | 0.573728 | 5.1:-37977323 | MS.gene62099:CDS |
| ACAAGGACCAGCTAATTGGT+TGG | 0.574029 | 5.1:-37977931 | MS.gene62099:CDS |
| CACTCTCACCCAGGGATCCG+AGG | 0.574921 | 5.1:-37977314 | MS.gene62099:CDS |
| CGAGAGATATAGGAGAGAGC+TGG | 0.578016 | 5.1:+37975584 | None:intergenic |
| TTGGCAAACCAGTGGCAGCA+AGG | 0.582193 | 5.1:+37977615 | None:intergenic |
| TGTTGGTCTATGCTTAAGGG+TGG | 0.586142 | 5.1:-37978799 | MS.gene62099:CDS |
| AAATGTCCCGGTGACAGCAA+TGG | 0.591314 | 5.1:-37978875 | MS.gene62099:CDS |
| TGAATGATGGACTACAAGGA+TGG | 0.593461 | 5.1:-37983863 | MS.gene62099:CDS |
| AGTGAGGGAGGCAAATGTCC+CGG | 0.594400 | 5.1:-37978887 | MS.gene62099:CDS |
| GAACTGAATGATGGACTACA+AGG | 0.594598 | 5.1:-37983867 | MS.gene62099:CDS |
| GAATATCTATTACAATGAAG+AGG | 0.596129 | 5.1:-37978273 | MS.gene62099:CDS |
| CATTTGAAAATGAAATGAAG+TGG | 0.596860 | 5.1:-37978159 | MS.gene62099:CDS |
| GATATAGGAGAGAGCTGGTG+CGG | 0.599971 | 5.1:+37975589 | None:intergenic |
| GCAATGGTCAAAACAACTGA+AGG | 0.603923 | 5.1:-37978859 | MS.gene62099:CDS |
| GCCGCCACCATGAACGATGG+GGG | 0.604639 | 5.1:+37975531 | None:intergenic |
| CCACAAAGGCCTCAGTACAA+TGG | 0.608931 | 5.1:-37983909 | MS.gene62099:CDS |
| ATCTTTGGGTAACAAATATG+TGG | 0.609080 | 5.1:-37983805 | MS.gene62099:CDS |
| GCGAAGGTACCCAAGAAGGT+TGG | 0.609945 | 5.1:+37978014 | None:intergenic |
| GAATTGTAATGTGGACAGCA+TGG | 0.610898 | 5.1:-37977292 | MS.gene62099:CDS |
| GAATGAATATGCACAAGGCA+AGG | 0.611352 | 5.1:-37978131 | MS.gene62099:CDS |
| GATCCTCCCAAAATATATTG+TGG | 0.612097 | 5.1:+37978044 | None:intergenic |
| ATGATTCCTCCATTGTACTG+AGG | 0.614806 | 5.1:+37983900 | None:intergenic |
| AGTTGGTCTGCTGAGAGCGA+AGG | 0.615345 | 5.1:+37977998 | None:intergenic |
| TTGAAGCCGATGTGATGCTA+CGG | 0.615957 | 5.1:-37978099 | MS.gene62099:CDS |
| TGCAGCTTGGATACAAGTGA+GGG | 0.616716 | 5.1:-37978902 | MS.gene62099:intron |
| TCGACAAACTGATTTATGAG+TGG | 0.617298 | 5.1:-37977199 | MS.gene62099:CDS |
| TGCCGCCACCATGAACGATG+GGG | 0.619190 | 5.1:+37975530 | None:intergenic |
| CGTCAGTGACAGATCTTGGG+CGG | 0.619752 | 5.1:-37975480 | MS.gene62099:CDS |
| ATAATCATTCATGAACAAAG+TGG | 0.625091 | 5.1:+37977805 | None:intergenic |
| AAATGTTGGCAAAATCACAC+AGG | 0.627006 | 5.1:-37976644 | MS.gene62099:intron |
| GTAGGATGACACATAGCAGA+AGG | 0.636550 | 5.1:+37984491 | None:intergenic |
| TGGACAGCATGGTCGCCACA+AGG | 0.636792 | 5.1:-37977281 | MS.gene62099:CDS |
| CTCATGTAAGGCAAGTTGGG+AGG | 0.637521 | 5.1:+37977653 | None:intergenic |
| TCCGATGTAGCTTCTACGCA+CGG | 0.640022 | 5.1:-37975637 | MS.gene62099:intron |
| TCTGTCACTGACGAGCAGAT+CGG | 0.641456 | 5.1:+37975490 | None:intergenic |
| TGCATACCGTAGCATCACAT+CGG | 0.645236 | 5.1:+37978093 | None:intergenic |
| GTGGTTACAAACCTGCAAGT+AGG | 0.646101 | 5.1:+37984473 | None:intergenic |
| AGTGTTTGGCACACCCACAA+AGG | 0.649093 | 5.1:-37983923 | MS.gene62099:CDS |
| GTGCAGCTTGGATACAAGTG+AGG | 0.649603 | 5.1:-37978903 | MS.gene62099:intron |
| CAAAGGCCTCAGTACAATGG+AGG | 0.654580 | 5.1:-37983906 | MS.gene62099:CDS |
| TTGTCGACAACATCGCCTGT+AGG | 0.657951 | 5.1:+37977215 | None:intergenic |
| AGCTTGGATACAAGTGAGGG+AGG | 0.658683 | 5.1:-37978899 | MS.gene62099:CDS |
| ACAAACTGATTTATGAGTGG+GGG | 0.660294 | 5.1:-37977196 | MS.gene62099:CDS |
| GATCCATATTGGCAAACCAG+TGG | 0.665618 | 5.1:+37977607 | None:intergenic |
| AAACACGGTATTGCTGTCAG+AGG | 0.669925 | 5.1:-37978067 | MS.gene62099:CDS |
| GGATCCGAGGAATTGTAATG+TGG | 0.677338 | 5.1:-37977301 | MS.gene62099:CDS |
| GCATCACCGTGGTCAAATCG+CGG | 0.677347 | 5.1:+37975363 | None:intergenic |
| CTACGGTATGCAAAGAAACA+CGG | 0.679684 | 5.1:-37978082 | MS.gene62099:CDS |
| GACTCAAGTCCAATTCCAAG+AGG | 0.679929 | 5.1:+37977692 | None:intergenic |
| AAGAGGCACACTCTCACCCA+GGG | 0.681086 | 5.1:-37977322 | MS.gene62099:CDS |
| TTCTGTGAGACACTATCATG+TGG | 0.686906 | 5.1:+37983762 | None:intergenic |
| TTGAATCGCGGAAAACACGT+CGG | 0.692158 | 5.1:+37975399 | None:intergenic |
| AAACACGTGTGGTTGAATCG+CGG | 0.692295 | 5.1:+37975387 | None:intergenic |
| GTACAAGCACTTGATGAACA+AGG | 0.693004 | 5.1:-37978316 | MS.gene62099:CDS |
| GACAAACTGATTTATGAGTG+GGG | 0.695455 | 5.1:-37977197 | MS.gene62099:CDS |
| CAAATCGCGGAAAACACGTG+TGG | 0.696832 | 5.1:+37975376 | None:intergenic |
| TACACGAATGAATATGCACA+AGG | 0.712550 | 5.1:-37978136 | MS.gene62099:CDS |
| CACATCCTAAAACAACCTTG+TGG | 0.735949 | 5.1:+37977266 | None:intergenic |
| GCTTAAGGGTGGTCTCACAG+CGG | 0.764795 | 5.1:-37978788 | MS.gene62099:CDS |
| GATGTAGCTTCTACGCACGG+TGG | 0.799714 | 5.1:-37975634 | MS.gene62099:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 37975375 | 37984524 | 37975375 | ID=MS.gene62099 |
| chr5.1 | mRNA | 37975375 | 37984524 | 37975375 | ID=MS.gene62099.t1;Parent=MS.gene62099 |
| chr5.1 | exon | 37984485 | 37984524 | 37984485 | ID=MS.gene62099.t1.exon1;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37984485 | 37984524 | 37984485 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37984031 | 37984077 | 37984031 | ID=MS.gene62099.t1.exon2;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37984031 | 37984077 | 37984031 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37983724 | 37983943 | 37983724 | ID=MS.gene62099.t1.exon3;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37983724 | 37983943 | 37983724 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37978756 | 37978919 | 37978756 | ID=MS.gene62099.t1.exon4;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37978756 | 37978919 | 37978756 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37978531 | 37978629 | 37978531 | ID=MS.gene62099.t1.exon5;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37978531 | 37978629 | 37978531 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37977574 | 37978359 | 37977574 | ID=MS.gene62099.t1.exon6;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37977574 | 37978359 | 37977574 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37977053 | 37977369 | 37977053 | ID=MS.gene62099.t1.exon7;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37977053 | 37977369 | 37977053 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37976645 | 37976679 | 37976645 | ID=MS.gene62099.t1.exon8;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37976645 | 37976679 | 37976645 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| chr5.1 | exon | 37975375 | 37975649 | 37975375 | ID=MS.gene62099.t1.exon9;Parent=MS.gene62099.t1 |
| chr5.1 | CDS | 37975375 | 37975649 | 37975375 | ID=cds.MS.gene62099.t1;Parent=MS.gene62099.t1 |
| Gene Sequence |
| Protein sequence |
