Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53185.t1 | XP_003621871.1 | 87.4 | 570 | 61 | 1 | 1 | 559 | 1 | 570 | 3.80E-295 | 1023.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53185.t1 | A0A1P8B8F8 | 39.1 | 552 | 312 | 10 | 7 | 542 | 10 | 553 | 5.8e-111 | 402.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53185.t1 | G7KWV0 | 87.4 | 570 | 61 | 1 | 1 | 559 | 1 | 570 | 2.7e-295 | 1023.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52090 | MS.gene53185 | PPI |
| MS.gene74061 | MS.gene53185 | PPI |
| MS.gene057723 | MS.gene53185 | PPI |
| MS.gene032541 | MS.gene53185 | PPI |
| MS.gene014213 | MS.gene53185 | PPI |
| MS.gene99993 | MS.gene53185 | PPI |
| MS.gene063101 | MS.gene53185 | PPI |
| MS.gene75410 | MS.gene53185 | PPI |
| MS.gene003507 | MS.gene53185 | PPI |
| MS.gene054660 | MS.gene53185 | PPI |
| MS.gene68149 | MS.gene53185 | PPI |
| MS.gene044959 | MS.gene53185 | PPI |
| MS.gene62099 | MS.gene53185 | PPI |
| MS.gene53185 | MS.gene59021 | PPI |
| MS.gene68749 | MS.gene53185 | PPI |
| MS.gene90963 | MS.gene53185 | PPI |
| MS.gene53185 | MS.gene032541 | PPI |
| MS.gene062453 | MS.gene53185 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53185.t1 | MTR_7g024420 | 87.368 | 570 | 61 | 1 | 1 | 559 | 1 | 570 | 0.0 | 1021 |
| MS.gene53185.t1 | MTR_5g049180 | 78.246 | 570 | 113 | 1 | 1 | 559 | 1 | 570 | 0.0 | 947 |
| MS.gene53185.t1 | MTR_4g074070 | 72.154 | 571 | 147 | 2 | 1 | 559 | 1 | 571 | 0.0 | 889 |
| MS.gene53185.t1 | MTR_1g106200 | 47.786 | 542 | 267 | 4 | 9 | 534 | 18 | 559 | 0.0 | 534 |
| MS.gene53185.t1 | MTR_1g106790 | 47.398 | 538 | 268 | 4 | 8 | 530 | 17 | 554 | 0.0 | 526 |
| MS.gene53185.t1 | MTR_1g106910 | 46.223 | 556 | 281 | 5 | 8 | 548 | 17 | 569 | 0.0 | 524 |
| MS.gene53185.t1 | MTR_1g106770 | 46.449 | 521 | 264 | 4 | 29 | 534 | 4 | 524 | 5.95e-174 | 503 |
| MS.gene53185.t1 | MTR_1g106200 | 43.727 | 542 | 256 | 5 | 9 | 534 | 24 | 532 | 4.02e-159 | 466 |
| MS.gene53185.t1 | MTR_3g117800 | 37.774 | 548 | 315 | 10 | 9 | 549 | 1 | 529 | 6.64e-131 | 393 |
| MS.gene53185.t1 | MTR_3g117800 | 40.909 | 462 | 263 | 6 | 81 | 535 | 9 | 467 | 1.04e-125 | 377 |
| MS.gene53185.t1 | MTR_3g117800 | 43.059 | 425 | 234 | 4 | 117 | 536 | 17 | 438 | 1.27e-124 | 374 |
| MS.gene53185.t1 | MTR_1g017020 | 30.403 | 546 | 317 | 14 | 35 | 532 | 353 | 883 | 4.54e-67 | 234 |
| MS.gene53185.t1 | MTR_3g103610 | 30.524 | 534 | 302 | 15 | 43 | 526 | 200 | 714 | 3.93e-63 | 221 |
| MS.gene53185.t1 | MTR_4g121520 | 43.350 | 203 | 89 | 1 | 294 | 496 | 223 | 399 | 1.94e-45 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53185.t1 | AT4G33840 | 57.482 | 548 | 214 | 6 | 16 | 547 | 19 | 563 | 0.0 | 670 |
| MS.gene53185.t1 | AT4G33830 | 56.912 | 557 | 220 | 7 | 6 | 546 | 10 | 562 | 0.0 | 660 |
| MS.gene53185.t1 | AT4G33860 | 57.248 | 545 | 214 | 6 | 16 | 544 | 19 | 560 | 0.0 | 658 |
| MS.gene53185.t1 | AT4G33810 | 39.029 | 556 | 307 | 10 | 7 | 542 | 10 | 553 | 1.67e-134 | 403 |
| MS.gene53185.t1 | AT4G33810 | 39.029 | 556 | 307 | 10 | 7 | 542 | 10 | 553 | 1.67e-134 | 403 |
| MS.gene53185.t1 | AT4G33810 | 39.029 | 556 | 307 | 10 | 7 | 542 | 10 | 553 | 1.67e-134 | 403 |
| MS.gene53185.t1 | AT4G33820 | 38.959 | 557 | 307 | 10 | 7 | 542 | 10 | 554 | 1.79e-132 | 398 |
| MS.gene53185.t1 | AT4G38650 | 40.875 | 526 | 285 | 11 | 22 | 535 | 34 | 545 | 9.55e-132 | 396 |
| MS.gene53185.t1 | AT4G33810 | 42.151 | 465 | 259 | 5 | 86 | 542 | 51 | 513 | 1.05e-131 | 394 |
| MS.gene53185.t1 | AT4G33810 | 42.151 | 465 | 259 | 5 | 86 | 542 | 51 | 513 | 1.05e-131 | 394 |
| MS.gene53185.t1 | AT2G14690 | 36.969 | 541 | 311 | 7 | 18 | 542 | 28 | 554 | 2.34e-119 | 364 |
| MS.gene53185.t1 | AT4G38300 | 45.946 | 259 | 128 | 2 | 179 | 437 | 10 | 256 | 4.74e-76 | 242 |
| MS.gene53185.t1 | AT1G58370 | 29.074 | 540 | 321 | 14 | 35 | 526 | 362 | 887 | 2.76e-63 | 223 |
| MS.gene53185.t1 | AT1G58370 | 29.074 | 540 | 321 | 14 | 35 | 526 | 390 | 915 | 2.97e-63 | 224 |
| MS.gene53185.t1 | AT1G10050 | 28.868 | 530 | 321 | 15 | 43 | 526 | 518 | 1037 | 1.88e-57 | 208 |
| MS.gene53185.t1 | AT1G10050 | 28.868 | 530 | 321 | 15 | 43 | 526 | 518 | 1037 | 1.88e-57 | 208 |
| MS.gene53185.t1 | AT1G10050 | 28.868 | 530 | 321 | 15 | 43 | 526 | 550 | 1069 | 2.11e-57 | 207 |
| MS.gene53185.t1 | AT4G08160 | 31.980 | 394 | 255 | 9 | 143 | 529 | 339 | 726 | 2.44e-55 | 199 |
| MS.gene53185.t1 | AT4G08160 | 28.661 | 478 | 279 | 14 | 35 | 460 | 190 | 657 | 1.38e-50 | 184 |
Find 128 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCAATAAGGTTGGTATTT+TGG | 0.105186 | 5.4:+33443434 | None:intergenic |
| ATAATACTTCTGCGGAAATT+TGG | 0.146645 | 5.4:-33443933 | MS.gene53185:CDS |
| TTAGAGGCCACAATATATTT+TGG | 0.167474 | 5.4:-33443463 | MS.gene53185:CDS |
| TTTGAATCTCTTTGATCTTT+TGG | 0.167892 | 5.4:+33443144 | None:intergenic |
| ATCCAAAATACCAACCTTAT+TGG | 0.175169 | 5.4:-33443436 | MS.gene53185:CDS |
| CTTTGTGTCATCCTACTTTC+AGG | 0.197016 | 5.4:-33445762 | MS.gene53185:intron |
| ACAACCAAAGGATTTAAATT+TGG | 0.200208 | 5.4:-33444137 | MS.gene53185:CDS |
| GCGCCACTGGTTTGCCAATA+TGG | 0.238352 | 5.4:-33443022 | MS.gene53185:CDS |
| GGTACTTCGAGCAGGTTCTT+AGG | 0.242834 | 5.4:-33442881 | MS.gene53185:CDS |
| GGCAAGTTAGGAGGACTATT+AGG | 0.280499 | 5.4:+33443074 | None:intergenic |
| GGTCGCCACAAGGTTGTTAT+AGG | 0.291268 | 5.4:-33442809 | MS.gene53185:CDS |
| TGTAGTCCATCATTCAATTC+CGG | 0.295809 | 5.4:+33444356 | None:intergenic |
| AGGCCTCAAAGTATCCATTT+TGG | 0.300460 | 5.4:+33442685 | None:intergenic |
| AACTACTACTTTCCTCTTGC+GGG | 0.313714 | 5.4:+33443748 | None:intergenic |
| GCATTTAGAATATGCATAAA+TGG | 0.323795 | 5.4:+33444109 | None:intergenic |
| ACCACCAAATTTAAATCCTT+TGG | 0.324920 | 5.4:+33444133 | None:intergenic |
| AGCCGATTGCCTCTTGGAAT+TGG | 0.326369 | 5.4:-33443113 | MS.gene53185:CDS |
| TCCAAAATACCAACCTTATT+GGG | 0.334292 | 5.4:-33443435 | MS.gene53185:CDS |
| TAATACTTCTGCGGAAATTT+GGG | 0.337149 | 5.4:-33443932 | MS.gene53185:CDS |
| TAAATGCTGGTCCATGCTTA+AGG | 0.347457 | 5.4:-33444093 | MS.gene53185:CDS |
| ATCAGCATTGGTTTGCATCT+AGG | 0.350966 | 5.4:-33443607 | MS.gene53185:CDS |
| TTTCGTAGTCGCCGTGGAAA+AGG | 0.351378 | 5.4:+33442661 | None:intergenic |
| TCAGGGATGACAAACCAAAA+TGG | 0.352197 | 5.4:-33442699 | MS.gene53185:CDS |
| CATTCTCATCCTGGGATTCA+TGG | 0.353101 | 5.4:-33442852 | MS.gene53185:CDS |
| CGTCGCAAGCCAACCTAATC+AGG | 0.365336 | 5.4:-33442985 | MS.gene53185:intron |
| GTAGTCCATCATTCAATTCC+GGG | 0.366767 | 5.4:+33444357 | None:intergenic |
| AGATACAAGGGACAGCTTAT+TGG | 0.367088 | 5.4:-33443347 | MS.gene53185:CDS |
| CCACAAAAGCCTCAGTATAA+TGG | 0.367830 | 5.4:-33444395 | MS.gene53185:CDS |
| TTTCCACGGCGACTACGAAA+TGG | 0.378456 | 5.4:-33442658 | MS.gene53185:CDS |
| GCAAGTTAGGAGGACTATTA+GGG | 0.379213 | 5.4:+33443075 | None:intergenic |
| GTAAGAGATATACTTGCATT+TGG | 0.383405 | 5.4:+33443695 | None:intergenic |
| GCTCTCATGTAAGGCAAGTT+AGG | 0.385964 | 5.4:+33443062 | None:intergenic |
| TCTAATTCAGTGATCCATAT+TGG | 0.391697 | 5.4:+33443008 | None:intergenic |
| CTACAAGGATGGACAGCATT+TGG | 0.393452 | 5.4:-33444338 | MS.gene53185:CDS |
| TTAACGCTGCAGTCGAAAAC+AGG | 0.406990 | 5.4:-33443388 | MS.gene53185:CDS |
| AAATGCTGGTCCATGCTTAA+GGG | 0.423126 | 5.4:-33444092 | MS.gene53185:CDS |
| CTTGATACCCTTCGCGCCAC+TGG | 0.423498 | 5.4:-33443035 | MS.gene53185:CDS |
| GCTGATATGCAATATTGTTC+AGG | 0.425967 | 5.4:+33443624 | None:intergenic |
| ACCAAAGGATTTAAATTTGG+TGG | 0.427149 | 5.4:-33444134 | MS.gene53185:CDS |
| GACAGTGAAGAAACCCAATA+AGG | 0.439540 | 5.4:+33443422 | None:intergenic |
| GTACTTCGAGCAGGTTCTTA+GGG | 0.448967 | 5.4:-33442880 | MS.gene53185:CDS |
| CAAGGGACAGCTTATTGGTT+GGG | 0.452749 | 5.4:-33443342 | MS.gene53185:CDS |
| TCGTTCTTTGAAAGTAAACT+AGG | 0.456276 | 5.4:-33443293 | MS.gene53185:CDS |
| CAGTGGCGCGAAGGGTATCA+AGG | 0.456864 | 5.4:+33443036 | None:intergenic |
| CGATCGGCTGATCAATGAAT+GGG | 0.461415 | 5.4:-33442736 | MS.gene53185:CDS |
| ATCATTCGGCAACAAATTTG+TGG | 0.461505 | 5.4:-33444291 | MS.gene53185:CDS |
| CGTTCTTTGAAAGTAAACTA+GGG | 0.470094 | 5.4:-33443292 | MS.gene53185:CDS |
| AGGGAGGCACATTCTCATCC+TGG | 0.470704 | 5.4:-33442861 | MS.gene53185:CDS |
| AAACACGGTATTGCTGTTAG+AGG | 0.472356 | 5.4:-33443479 | MS.gene53185:CDS |
| CAGAAGATTTACCTACGAAA+AGG | 0.473611 | 5.4:-33444230 | MS.gene53185:CDS |
| TTTATGCATATTCTAAATGC+TGG | 0.476393 | 5.4:-33444106 | MS.gene53185:CDS |
| TTTCGACTGCAGCGTTAAGC+TGG | 0.478600 | 5.4:+33443393 | None:intergenic |
| ACAATATTGCATATCAGCAT+TGG | 0.483381 | 5.4:-33443619 | MS.gene53185:CDS |
| GTGAATAGCCGATTGCCTCT+TGG | 0.483402 | 5.4:-33443119 | MS.gene53185:CDS |
| ACTGCAGCGTTAAGCTGGTT+CGG | 0.488279 | 5.4:+33443398 | None:intergenic |
| TTTCAAAGAACGAGAAATGC+AGG | 0.489934 | 5.4:+33443303 | None:intergenic |
| TTCAGCTAGGATGTTTAATG+AGG | 0.497481 | 5.4:-33443261 | MS.gene53185:CDS |
| TTGGTTTGCATCTAGGTTCA+CGG | 0.499951 | 5.4:-33443600 | MS.gene53185:CDS |
| TCAAGGGCAGCTCTCATGTA+AGG | 0.502828 | 5.4:+33443053 | None:intergenic |
| TTCGTAGTCGCCGTGGAAAA+GGG | 0.505722 | 5.4:+33442662 | None:intergenic |
| TCAAGAACAAAGTATCGAAA+AGG | 0.510123 | 5.4:-33443860 | MS.gene53185:intron |
| AAACCAAAATGGATACTTTG+AGG | 0.511607 | 5.4:-33442688 | MS.gene53185:CDS |
| TCGATCGGCTGATCAATGAA+TGG | 0.512209 | 5.4:-33442737 | MS.gene53185:CDS |
| TTGTTGATGGCACTTCCAAA+TGG | 0.526049 | 5.4:+33443653 | None:intergenic |
| ATAGAATACAGAGAATCATT+CGG | 0.526685 | 5.4:-33444305 | MS.gene53185:CDS |
| TCTCTTACAATGAAGAGGTA+TGG | 0.528303 | 5.4:-33443680 | MS.gene53185:CDS |
| TCCCTTGTATCTTGTTACAA+TGG | 0.532207 | 5.4:+33443358 | None:intergenic |
| GGGAGGCACATTCTCATCCT+GGG | 0.533767 | 5.4:-33442860 | MS.gene53185:CDS |
| GTCCAATTCCAAGAGGCAAT+CGG | 0.535358 | 5.4:+33443111 | None:intergenic |
| GAACTACTACTTTCCTCTTG+CGG | 0.539477 | 5.4:+33443747 | None:intergenic |
| ATTATAATGCCATGAATCCC+AGG | 0.539605 | 5.4:+33442843 | None:intergenic |
| AATTTCAAGAACTTGCCTGC+AGG | 0.540391 | 5.4:-33442768 | MS.gene53185:CDS |
| CTAGGCACGGTACTTCGAGC+AGG | 0.542454 | 5.4:-33442889 | MS.gene53185:intron |
| TGGCAAACCAGTGGCGCGAA+GGG | 0.543313 | 5.4:+33443028 | None:intergenic |
| GTTCAAGCCGTTGACGAACA+AGG | 0.543613 | 5.4:-33443728 | MS.gene53185:CDS |
| GACGTTCGCACTATAATCAT+AGG | 0.544116 | 5.4:+33444519 | None:intergenic |
| ACATTATTATTCTTCTTGAG+AGG | 0.544752 | 5.4:+33442624 | None:intergenic |
| ACAAGGGACAGCTTATTGGT+TGG | 0.545098 | 5.4:-33443343 | MS.gene53185:CDS |
| ACCATTGAGGATAGTAGAGA+TGG | 0.546920 | 5.4:-33443191 | MS.gene53185:CDS |
| TTGGCAAACCAGTGGCGCGA+AGG | 0.547234 | 5.4:+33443027 | None:intergenic |
| TTCCATTGTAACAAGATACA+AGG | 0.550778 | 5.4:-33443360 | MS.gene53185:CDS |
| GGTCTTATAGCAGATACAAC+AGG | 0.554787 | 5.4:-33444068 | MS.gene53185:CDS |
| CATTATTATTCTTCTTGAGA+GGG | 0.555776 | 5.4:+33442625 | None:intergenic |
| AATGCTGGTCCATGCTTAAG+GGG | 0.562077 | 5.4:-33444091 | MS.gene53185:CDS |
| ACCATCTCTACTATCCTCAA+TGG | 0.563345 | 5.4:+33443190 | None:intergenic |
| GATCATCCCAAAATATATTG+TGG | 0.564135 | 5.4:+33443456 | None:intergenic |
| GAATTGAATGATGGACTACA+AGG | 0.572886 | 5.4:-33444353 | MS.gene53185:CDS |
| GTGGTTACAAACCTGAAAGT+AGG | 0.579019 | 5.4:+33445751 | None:intergenic |
| CGATCGACAACATCACCTGC+AGG | 0.581257 | 5.4:+33442753 | None:intergenic |
| AGCAGCTGAGCTCTACTTCG+AGG | 0.583057 | 5.4:-33444045 | MS.gene53185:intron |
| GTGAAGAAACCCAATAAGGT+TGG | 0.583381 | 5.4:+33443426 | None:intergenic |
| GTATATCTCTTACAATGAAG+AGG | 0.584879 | 5.4:-33443685 | MS.gene53185:CDS |
| AGAGTGCCCTTGTTCGTCAA+CGG | 0.584953 | 5.4:+33443721 | None:intergenic |
| CTCATGTAAGGCAAGTTAGG+AGG | 0.585719 | 5.4:+33443065 | None:intergenic |
| CATTTGAAAATGAAATGAAG+TGG | 0.592024 | 5.4:-33443571 | MS.gene53185:CDS |
| TGAATGATGGACTACAAGGA+TGG | 0.595944 | 5.4:-33444349 | MS.gene53185:CDS |
| CTGCAGGTGATGTTGTCGAT+CGG | 0.596803 | 5.4:-33442752 | MS.gene53185:CDS |
| GTAGAGCAATAATACTTCTG+CGG | 0.599674 | 5.4:-33443941 | MS.gene53185:intron |
| AGTGGCGCGAAGGGTATCAA+GGG | 0.605278 | 5.4:+33443037 | None:intergenic |
| ATGCTGGTCCATGCTTAAGG+GGG | 0.608093 | 5.4:-33444090 | MS.gene53185:CDS |
| ATGATTCCTCCATTATACTG+AGG | 0.608257 | 5.4:+33444386 | None:intergenic |
| TTTCCATTTCGTAGTCGCCG+TGG | 0.612939 | 5.4:+33442655 | None:intergenic |
| GGATTCATGGCATTATAATG+TGG | 0.613523 | 5.4:-33442839 | MS.gene53185:CDS |
| TAACTTGGCAGGCCCGCAAG+AGG | 0.615535 | 5.4:-33443760 | MS.gene53185:intron |
| GCAGTAGTCAAAACAACCAA+AGG | 0.615768 | 5.4:-33444149 | MS.gene53185:CDS |
| GTTCTTTGAAAGTAAACTAG+GGG | 0.616605 | 5.4:-33443291 | MS.gene53185:CDS |
| TTGACGCTGATGTGATGCTA+CGG | 0.617241 | 5.4:-33443511 | MS.gene53185:CDS |
| AACCATTCACAGAAAAGCAA+TGG | 0.617386 | 5.4:-33443891 | MS.gene53185:CDS |
| GAATGAATATAATACCATTG+AGG | 0.618665 | 5.4:-33443204 | MS.gene53185:CDS |
| GATCCATATTGGCAAACCAG+TGG | 0.621061 | 5.4:+33443019 | None:intergenic |
| CAAAAGCCTCAGTATAATGG+AGG | 0.621253 | 5.4:-33444392 | MS.gene53185:CDS |
| TTCAAGCCGTTGACGAACAA+GGG | 0.621402 | 5.4:-33443727 | MS.gene53185:CDS |
| GATCGGCTGATCAATGAATG+GGG | 0.622857 | 5.4:-33442735 | MS.gene53185:CDS |
| TGGACAGCGTGGTCGCCACA+AGG | 0.629546 | 5.4:-33442819 | MS.gene53185:CDS |
| CATTCACAGAAAAGCAATGG+AGG | 0.635054 | 5.4:-33443888 | MS.gene53185:CDS |
| CTTCGAGCAGGTTCTTAGGG+AGG | 0.638997 | 5.4:-33442877 | MS.gene53185:CDS |
| TGCTGGTCCATGCTTAAGGG+GGG | 0.652331 | 5.4:-33444089 | MS.gene53185:CDS |
| CAAATCCTATAACAACCTTG+TGG | 0.659795 | 5.4:+33442804 | None:intergenic |
| GTAGGATGACACAAAGCACA+TGG | 0.664336 | 5.4:+33445769 | None:intergenic |
| TCCATTGTAACAAGATACAA+GGG | 0.667061 | 5.4:-33443359 | MS.gene53185:CDS |
| TTCTGAGAGACACTATCATG+TGG | 0.671533 | 5.4:+33444248 | None:intergenic |
| GCATTATAATGTGGACAGCG+TGG | 0.672493 | 5.4:-33442830 | MS.gene53185:CDS |
| ATCGGCTGATCAATGAATGG+GGG | 0.677429 | 5.4:-33442734 | MS.gene53185:CDS |
| CTACGGTATGCAAAGAAACA+CGG | 0.679684 | 5.4:-33443494 | MS.gene53185:CDS |
| GACTCGAGTCCAATTCCAAG+AGG | 0.682225 | 5.4:+33443104 | None:intergenic |
| GTAGTCGCCGTGGAAAAGGG+AGG | 0.696262 | 5.4:+33442665 | None:intergenic |
| ATGGTTTATCAACCCCACCA+AGG | 0.707131 | 5.4:-33443172 | MS.gene53185:CDS |
| TACACGAATGAATATGCACA+AGG | 0.712550 | 5.4:-33443548 | MS.gene53185:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTTATTCAATTAAGA+TGG | - | chr5.4:33442746-33442765 | MS.gene53185:CDS | 10.0% |
| !! | ATATCATAGGAAAATAAAAA+TGG | + | chr5.4:33443702-33443721 | None:intergenic | 15.0% |
| !! | TATCATAGGAAAATAAAAAT+GGG | + | chr5.4:33443701-33443720 | None:intergenic | 15.0% |
| !! | TCATCAAATTATTATATCAT+AGG | + | chr5.4:33443715-33443734 | None:intergenic | 15.0% |
| !!! | AGAATAAAATTGATAGTTAT+AGG | - | chr5.4:33443134-33443153 | MS.gene53185:CDS | 15.0% |
| !!! | TAATTTTTTTTTACCTGATT+AGG | + | chr5.4:33445362-33445381 | None:intergenic | 15.0% |
| !!! | TGTTTAATTCTTTAAAATGA+TGG | - | chr5.4:33444362-33444381 | MS.gene53185:CDS | 15.0% |
| !!! | TTTAAAACATAGATTTCAAT+CGG | - | chr5.4:33443228-33443247 | MS.gene53185:CDS | 15.0% |
| !! | AAACGAATTATCATACTTTA+AGG | + | chr5.4:33442901-33442920 | None:intergenic | 20.0% |
| !! | AGGATTGTATTATTCTTTAT+CGG | - | chr5.4:33444121-33444140 | MS.gene53185:CDS | 20.0% |
| !! | TAACAAGTTTAATTCTAACT+TGG | - | chr5.4:33444556-33444575 | MS.gene53185:intron | 20.0% |
| !!! | ATTTGAAACCAAAACTAATT+GGG | + | chr5.4:33443566-33443585 | None:intergenic | 20.0% |
| !!! | TTCATTATTTTCAACATTAG+CGG | - | chr5.4:33443353-33443372 | MS.gene53185:CDS | 20.0% |
| !!! | TTTTTTTTATGTTAATCCTC+TGG | - | chr5.4:33443439-33443458 | MS.gene53185:CDS | 20.0% |
| ! | AAAAAAAAACATGTTACCAC+AGG | - | chr5.4:33443769-33443788 | MS.gene53185:intron | 25.0% |
| ! | AAAAAGAAAAAGAACAGAAG+AGG | + | chr5.4:33443191-33443210 | None:intergenic | 25.0% |
| ! | AATCGGTTAAAACAAACTAT+TGG | - | chr5.4:33443245-33443264 | MS.gene53185:CDS | 25.0% |
| ! | ACAACCAAAGGATTTAAATT+TGG | - | chr5.4:33444194-33444213 | MS.gene53185:intron | 25.0% |
| ! | ACATTATTATTCTTCTTGAG+AGG | + | chr5.4:33445710-33445729 | None:intergenic | 25.0% |
| ! | ATAGAATACAGAGAATCATT+CGG | - | chr5.4:33444026-33444045 | MS.gene53185:intron | 25.0% |
| ! | CATTATTATTCTTCTTGAGA+GGG | + | chr5.4:33445709-33445728 | None:intergenic | 25.0% |
| ! | CATTTGAAAATGAAATGAAG+TGG | - | chr5.4:33444760-33444779 | MS.gene53185:intron | 25.0% |
| ! | GAATGAATATAATACCATTG+AGG | - | chr5.4:33445127-33445146 | MS.gene53185:intron | 25.0% |
| ! | TCTTCTCTTATATTCGATAT+CGG | + | chr5.4:33442671-33442690 | None:intergenic | 25.0% |
| ! | TTTATGCATATTCTAAATGC+TGG | - | chr5.4:33444225-33444244 | MS.gene53185:intron | 25.0% |
| !! | AAAACAAACTATTGGTGATT+TGG | - | chr5.4:33443253-33443272 | MS.gene53185:CDS | 25.0% |
| !! | AAACAAACTATTGGTGATTT+GGG | - | chr5.4:33443254-33443273 | MS.gene53185:CDS | 25.0% |
| !! | AATAATACAATCCTTTTCGT+AGG | + | chr5.4:33444115-33444134 | None:intergenic | 25.0% |
| !! | CTTCATTTCATTTTCAAATG+TGG | + | chr5.4:33444760-33444779 | None:intergenic | 25.0% |
| !! | GATTTGAAACCAAAACTAAT+TGG | + | chr5.4:33443567-33443586 | None:intergenic | 25.0% |
| !! | GCATTTAGAATATGCATAAA+TGG | + | chr5.4:33444225-33444244 | None:intergenic | 25.0% |
| !! | GTTTAATTTATATGCACTGT+CGG | + | chr5.4:33445387-33445406 | None:intergenic | 25.0% |
| !! | TTTGAAACCAAAACTAATTG+GGG | + | chr5.4:33443565-33443584 | None:intergenic | 25.0% |
| !! | TTTGAATCTCTTTGATCTTT+TGG | + | chr5.4:33445190-33445209 | None:intergenic | 25.0% |
| !!! | TGACTCATTTTTATCTTGAA+AGG | - | chr5.4:33443848-33443867 | MS.gene53185:intron | 25.0% |
| !!! | TTTTCACTTATGATTTGTCT+AGG | - | chr5.4:33445424-33445443 | MS.gene53185:intron | 25.0% |
| !!! | TTTTTTTTACCTGATTAGGT+TGG | + | chr5.4:33445358-33445377 | None:intergenic | 25.0% |
| AAAATCTAACAGCTAGACTA+TGG | + | chr5.4:33442988-33443007 | None:intergenic | 30.0% | |
| AAACCAAAATGGATACTTTG+AGG | - | chr5.4:33445643-33445662 | MS.gene53185:intron | 30.0% | |
| AAGTTTAATTCTAACTTGGC+AGG | - | chr5.4:33444560-33444579 | MS.gene53185:intron | 30.0% | |
| ACAATATTGCATATCAGCAT+TGG | - | chr5.4:33444712-33444731 | MS.gene53185:intron | 30.0% | |
| ACCAAAGGATTTAAATTTGG+TGG | - | chr5.4:33444197-33444216 | MS.gene53185:intron | 30.0% | |
| ACCACCAAATTTAAATCCTT+TGG | + | chr5.4:33444201-33444220 | None:intergenic | 30.0% | |
| ATAATACTTCTGCGGAAATT+TGG | - | chr5.4:33444398-33444417 | MS.gene53185:CDS | 30.0% | |
| ATCCAAAATACCAACCTTAT+TGG | - | chr5.4:33444895-33444914 | MS.gene53185:intron | 30.0% | |
| GATCATCCCAAAATATATTG+TGG | + | chr5.4:33444878-33444897 | None:intergenic | 30.0% | |
| GTAAGAGATATACTTGCATT+TGG | + | chr5.4:33444639-33444658 | None:intergenic | 30.0% | |
| GTATATCTCTTACAATGAAG+AGG | - | chr5.4:33444646-33444665 | MS.gene53185:intron | 30.0% | |
| TAATACTTCTGCGGAAATTT+GGG | - | chr5.4:33444399-33444418 | MS.gene53185:CDS | 30.0% | |
| TCCAAAATACCAACCTTATT+GGG | - | chr5.4:33444896-33444915 | MS.gene53185:intron | 30.0% | |
| TCCATTGTAACAAGATACAA+GGG | - | chr5.4:33444972-33444991 | MS.gene53185:intron | 30.0% | |
| TCTAATTCAGTGATCCATAT+TGG | + | chr5.4:33445326-33445345 | None:intergenic | 30.0% | |
| TTCATCCAAAAGTCGAATTA+GGG | - | chr5.4:33443511-33443530 | MS.gene53185:CDS | 30.0% | |
| TTCCATTGTAACAAGATACA+AGG | - | chr5.4:33444971-33444990 | MS.gene53185:intron | 30.0% | |
| TTCTTACATCCATAGTAATG+TGG | - | chr5.4:33443462-33443481 | MS.gene53185:CDS | 30.0% | |
| TTGACATGAACCATACATTA+GGG | + | chr5.4:33443038-33443057 | None:intergenic | 30.0% | |
| TTTCATCCAAAAGTCGAATT+AGG | - | chr5.4:33443510-33443529 | MS.gene53185:CDS | 30.0% | |
| ! | AAAAACCCTAATTCGACTTT+TGG | + | chr5.4:33443519-33443538 | None:intergenic | 30.0% |
| ! | CGTTCTTTGAAAGTAAACTA+GGG | - | chr5.4:33445039-33445058 | MS.gene53185:intron | 30.0% |
| ! | GTTCTTTGAAAGTAAACTAG+GGG | - | chr5.4:33445040-33445059 | MS.gene53185:intron | 30.0% |
| ! | TAGAGGCCACAATATATTTT+GGG | - | chr5.4:33444869-33444888 | MS.gene53185:intron | 30.0% |
| ! | TATTTTCAACATTAGCGGTA+TGG | - | chr5.4:33443358-33443377 | MS.gene53185:CDS | 30.0% |
| ! | TCGTTCTTTGAAAGTAAACT+AGG | - | chr5.4:33445038-33445057 | MS.gene53185:intron | 30.0% |
| ! | TGTATTATTCTTTATCGGCT+TGG | - | chr5.4:33444126-33444145 | MS.gene53185:CDS | 30.0% |
| ! | TTAGAGGCCACAATATATTT+TGG | - | chr5.4:33444868-33444887 | MS.gene53185:intron | 30.0% |
| ! | TTGATCTTTTGGATATACCT+TGG | + | chr5.4:33445179-33445198 | None:intergenic | 30.0% |
| !! | TCAAGAACAAAGTATCGAAA+AGG | - | chr5.4:33444471-33444490 | MS.gene53185:intron | 30.0% |
| AAAAACCCGGAATTGAATGA+TGG | - | chr5.4:33443969-33443988 | MS.gene53185:intron | 35.0% | |
| AAAACTAATTGGGGTTCGAA+TGG | + | chr5.4:33443556-33443575 | None:intergenic | 35.0% | |
| AACCATTCACAGAAAAGCAA+TGG | - | chr5.4:33444440-33444459 | MS.gene53185:intron | 35.0% | |
| AAGAAAAAGAACAGAAGAGG+TGG | + | chr5.4:33443188-33443207 | None:intergenic | 35.0% | |
| ACAATAACCCTAATGAAGAG+TGG | + | chr5.4:33442612-33442631 | None:intergenic | 35.0% | |
| ATCATTCGGCAACAAATTTG+TGG | - | chr5.4:33444040-33444059 | MS.gene53185:intron | 35.0% | |
| ATCCATAGTAATGTGGAGTT+CGG | - | chr5.4:33443469-33443488 | MS.gene53185:CDS | 35.0% | |
| ATGATTCCTCCATTATACTG+AGG | + | chr5.4:33443948-33443967 | None:intergenic | 35.0% | |
| ATTATAATGCCATGAATCCC+AGG | + | chr5.4:33445491-33445510 | None:intergenic | 35.0% | |
| CAAATCCTATAACAACCTTG+TGG | + | chr5.4:33445530-33445549 | None:intergenic | 35.0% | |
| CAGAAGATTTACCTACGAAA+AGG | - | chr5.4:33444101-33444120 | MS.gene53185:CDS | 35.0% | |
| GCTGATATGCAATATTGTTC+AGG | + | chr5.4:33444710-33444729 | None:intergenic | 35.0% | |
| GGATTCATGGCATTATAATG+TGG | - | chr5.4:33445492-33445511 | MS.gene53185:intron | 35.0% | |
| GTAGAGCAATAATACTTCTG+CGG | - | chr5.4:33444390-33444409 | MS.gene53185:CDS | 35.0% | |
| GTTGACATGAACCATACATT+AGG | + | chr5.4:33443039-33443058 | None:intergenic | 35.0% | |
| TACACGAATGAATATGCACA+AGG | - | chr5.4:33444783-33444802 | MS.gene53185:intron | 35.0% | |
| TCCCTTGTATCTTGTTACAA+TGG | + | chr5.4:33444976-33444995 | None:intergenic | 35.0% | |
| TCTCTTACAATGAAGAGGTA+TGG | - | chr5.4:33444651-33444670 | MS.gene53185:intron | 35.0% | |
| TCTCTTATATTCGATATCGG+AGG | + | chr5.4:33442668-33442687 | None:intergenic | 35.0% | |
| TGGAGGAATCATAAAAAACC+CGG | - | chr5.4:33443956-33443975 | MS.gene53185:intron | 35.0% | |
| TGTAGTCCATCATTCAATTC+CGG | + | chr5.4:33443978-33443997 | None:intergenic | 35.0% | |
| TTCAGCTAGGATGTTTAATG+AGG | - | chr5.4:33445070-33445089 | MS.gene53185:intron | 35.0% | |
| TTTCAAAGAACGAGAAATGC+AGG | + | chr5.4:33445031-33445050 | None:intergenic | 35.0% | |
| ! | ACTTATGATTTGTCTAGGCA+CGG | - | chr5.4:33445429-33445448 | MS.gene53185:intron | 35.0% |
| ! | ATCTTTTGGATATACCTTGG+TGG | + | chr5.4:33445176-33445195 | None:intergenic | 35.0% |
| ! | CATTATACTGAGGCTTTTGT+GGG | + | chr5.4:33443938-33443957 | None:intergenic | 35.0% |
| ! | CTAGCTGTTAGATTTTCATC+CGG | - | chr5.4:33442992-33443011 | MS.gene53185:CDS | 35.0% |
| ! | TAGCTGTTAGATTTTCATCC+GGG | - | chr5.4:33442993-33443012 | MS.gene53185:CDS | 35.0% |
| ! | TAGGGGAAAAATTTTCAGCT+AGG | - | chr5.4:33445057-33445076 | MS.gene53185:intron | 35.0% |
| ! | TCTTTTGGATATACCTTGGT+GGG | + | chr5.4:33445175-33445194 | None:intergenic | 35.0% |
| ! | TTGTTTTCGACTTCAGTGTT+TGG | - | chr5.4:33443908-33443927 | MS.gene53185:CDS | 35.0% |
| !! | AAGAGGTATGGTTTTCCATT+TGG | - | chr5.4:33444663-33444682 | MS.gene53185:intron | 35.0% |
| !! | ATTCGAACCCCAATTAGTTT+TGG | - | chr5.4:33443555-33443574 | MS.gene53185:CDS | 35.0% |
| !! | GAATTGAATGATGGACTACA+AGG | - | chr5.4:33443978-33443997 | MS.gene53185:intron | 35.0% |
| !! | GTTCAGGATGTTTTTGTTGA+TGG | + | chr5.4:33444694-33444713 | None:intergenic | 35.0% |
| !!! | ACCCAATAAGGTTGGTATTT+TGG | + | chr5.4:33444900-33444919 | None:intergenic | 35.0% |
| AAATGCTGGTCCATGCTTAA+GGG | - | chr5.4:33444239-33444258 | MS.gene53185:CDS | 40.0% | |
| AACTACTACTTTCCTCTTGC+GGG | + | chr5.4:33444586-33444605 | None:intergenic | 40.0% | |
| AATTTCAAGAACTTGCCTGC+AGG | - | chr5.4:33445563-33445582 | MS.gene53185:intron | 40.0% | |
| ACCATCTCTACTATCCTCAA+TGG | + | chr5.4:33445144-33445163 | None:intergenic | 40.0% | |
| ACCATTGAGGATAGTAGAGA+TGG | - | chr5.4:33445140-33445159 | MS.gene53185:intron | 40.0% | |
| ACGAATCTCCACTCTTCATT+AGG | - | chr5.4:33442601-33442620 | MS.gene53185:CDS | 40.0% | |
| ACTATGGATGTAAGAACCAG+AGG | + | chr5.4:33443458-33443477 | None:intergenic | 40.0% | |
| AGATACAAGGGACAGCTTAT+TGG | - | chr5.4:33444984-33445003 | MS.gene53185:intron | 40.0% | |
| ATCCGAACTCCACATTACTA+TGG | + | chr5.4:33443474-33443493 | None:intergenic | 40.0% | |
| CAAAAGCCTCAGTATAATGG+AGG | - | chr5.4:33443939-33443958 | MS.gene53185:CDS | 40.0% | |
| CATTCACAGAAAAGCAATGG+AGG | - | chr5.4:33444443-33444462 | MS.gene53185:intron | 40.0% | |
| CCACAAAAGCCTCAGTATAA+TGG | - | chr5.4:33443936-33443955 | MS.gene53185:CDS | 40.0% | |
| CGAATCTCCACTCTTCATTA+GGG | - | chr5.4:33442602-33442621 | MS.gene53185:CDS | 40.0% | |
| CTACGGTATGCAAAGAAACA+CGG | - | chr5.4:33444837-33444856 | MS.gene53185:intron | 40.0% | |
| CTTTGTGTCATCCTACTTTC+AGG | - | chr5.4:33442569-33442588 | MS.gene53185:CDS | 40.0% | |
| GAACTACTACTTTCCTCTTG+CGG | + | chr5.4:33444587-33444606 | None:intergenic | 40.0% | |
| GACAGTGAAGAAACCCAATA+AGG | + | chr5.4:33444912-33444931 | None:intergenic | 40.0% | |
| GACGTTCGCACTATAATCAT+AGG | + | chr5.4:33443815-33443834 | None:intergenic | 40.0% | |
| GAGTTTCGAACCCTAATGTA+TGG | - | chr5.4:33443025-33443044 | MS.gene53185:CDS | 40.0% | |
| GCAAGTTAGGAGGACTATTA+GGG | + | chr5.4:33445259-33445278 | None:intergenic | 40.0% | |
| GCAGTAGTCAAAACAACCAA+AGG | - | chr5.4:33444182-33444201 | MS.gene53185:intron | 40.0% | |
| GTAGTCCATCATTCAATTCC+GGG | + | chr5.4:33443977-33443996 | None:intergenic | 40.0% | |
| GTGAAGAAACCCAATAAGGT+TGG | + | chr5.4:33444908-33444927 | None:intergenic | 40.0% | |
| GTGGTTACAAACCTGAAAGT+AGG | + | chr5.4:33442583-33442602 | None:intergenic | 40.0% | |
| TAAATGCTGGTCCATGCTTA+AGG | - | chr5.4:33444238-33444257 | MS.gene53185:CDS | 40.0% | |
| TAATGAAGAGTGGAGATTCG+TGG | + | chr5.4:33442602-33442621 | None:intergenic | 40.0% | |
| TCAACTGAGTTATGCTTGCA+GGG | - | chr5.4:33443054-33443073 | MS.gene53185:CDS | 40.0% | |
| TCAGGGATGACAAACCAAAA+TGG | - | chr5.4:33445632-33445651 | MS.gene53185:intron | 40.0% | |
| ! | AAACACGGTATTGCTGTTAG+AGG | - | chr5.4:33444852-33444871 | MS.gene53185:intron | 40.0% |
| ! | CATCTAAAACGTACTCTCTC+AGG | + | chr5.4:33442791-33442810 | None:intergenic | 40.0% |
| ! | CCATTATACTGAGGCTTTTG+TGG | + | chr5.4:33443939-33443958 | None:intergenic | 40.0% |
| ! | CTTTTGGATATACCTTGGTG+GGG | + | chr5.4:33445174-33445193 | None:intergenic | 40.0% |
| ! | GGTCTTATAGCAGATACAAC+AGG | - | chr5.4:33444263-33444282 | MS.gene53185:CDS | 40.0% |
| ! | TTCTGAGAGACACTATCATG+TGG | + | chr5.4:33444086-33444105 | None:intergenic | 40.0% |
| !! | AGGCCTCAAAGTATCCATTT+TGG | + | chr5.4:33445649-33445668 | None:intergenic | 40.0% |
| !! | ATCAGCATTGGTTTGCATCT+AGG | - | chr5.4:33444724-33444743 | MS.gene53185:intron | 40.0% |
| !! | CAGTGTAACGCTTCTAAAAC+TGG | + | chr5.4:33443310-33443329 | None:intergenic | 40.0% |
| !! | CTCCATTGCTTTTCTGTGAA+TGG | + | chr5.4:33444445-33444464 | None:intergenic | 40.0% |
| !! | TGAATGATGGACTACAAGGA+TGG | - | chr5.4:33443982-33444001 | MS.gene53185:intron | 40.0% |
| !! | TTGGTTTGCATCTAGGTTCA+CGG | - | chr5.4:33444731-33444750 | MS.gene53185:intron | 40.0% |
| !! | TTGTTGATGGCACTTCCAAA+TGG | + | chr5.4:33444681-33444700 | None:intergenic | 40.0% |
| AATGCTGGTCCATGCTTAAG+GGG | - | chr5.4:33444240-33444259 | MS.gene53185:CDS | 45.0% | |
| ACAAGGGACAGCTTATTGGT+TGG | - | chr5.4:33444988-33445007 | MS.gene53185:intron | 45.0% | |
| ATCGGCTGATCAATGAATGG+GGG | - | chr5.4:33445597-33445616 | MS.gene53185:intron | 45.0% | |
| ATGGTTTATCAACCCCACCA+AGG | - | chr5.4:33445159-33445178 | MS.gene53185:intron | 45.0% | |
| CATTCTCATCCTGGGATTCA+TGG | - | chr5.4:33445479-33445498 | MS.gene53185:intron | 45.0% | |
| CGATCGGCTGATCAATGAAT+GGG | - | chr5.4:33445595-33445614 | MS.gene53185:intron | 45.0% | |
| CTACAAGGATGGACAGCATT+TGG | - | chr5.4:33443993-33444012 | MS.gene53185:intron | 45.0% | |
| CTCATGTAAGGCAAGTTAGG+AGG | + | chr5.4:33445269-33445288 | None:intergenic | 45.0% | |
| GATCCATATTGGCAAACCAG+TGG | + | chr5.4:33445315-33445334 | None:intergenic | 45.0% | |
| GATCGGCTGATCAATGAATG+GGG | - | chr5.4:33445596-33445615 | MS.gene53185:intron | 45.0% | |
| GCATTATAATGTGGACAGCG+TGG | - | chr5.4:33445501-33445520 | MS.gene53185:intron | 45.0% | |
| GCTCTCATGTAAGGCAAGTT+AGG | + | chr5.4:33445272-33445291 | None:intergenic | 45.0% | |
| GGCAAGTTAGGAGGACTATT+AGG | + | chr5.4:33445260-33445279 | None:intergenic | 45.0% | |
| GGGGGAGAGCAAAAATATCA+GGG | - | chr5.4:33445615-33445634 | MS.gene53185:intron | 45.0% | |
| GTACTTCGAGCAGGTTCTTA+GGG | - | chr5.4:33445451-33445470 | MS.gene53185:intron | 45.0% | |
| GTAGGATGACACAAAGCACA+TGG | + | chr5.4:33442565-33442584 | None:intergenic | 45.0% | |
| GTCAACTGAGTTATGCTTGC+AGG | - | chr5.4:33443053-33443072 | MS.gene53185:CDS | 45.0% | |
| GTCCAATTCCAAGAGGCAAT+CGG | + | chr5.4:33445223-33445242 | None:intergenic | 45.0% | |
| TATAAGACCCCCCTTAAGCA+TGG | + | chr5.4:33444252-33444271 | None:intergenic | 45.0% | |
| TCGATCGGCTGATCAATGAA+TGG | - | chr5.4:33445594-33445613 | MS.gene53185:intron | 45.0% | |
| TGCTTCAGCTTCAAAACCTG+TGG | + | chr5.4:33443788-33443807 | None:intergenic | 45.0% | |
| TGGGGGAGAGCAAAAATATC+AGG | - | chr5.4:33445614-33445633 | MS.gene53185:intron | 45.0% | |
| TTAACGCTGCAGTCGAAAAC+AGG | - | chr5.4:33444943-33444962 | MS.gene53185:intron | 45.0% | |
| TTCAAGCCGTTGACGAACAA+GGG | - | chr5.4:33444604-33444623 | MS.gene53185:intron | 45.0% | |
| TTGACGCTGATGTGATGCTA+CGG | - | chr5.4:33444820-33444839 | MS.gene53185:intron | 45.0% | |
| ! | CAAGGGACAGCTTATTGGTT+GGG | - | chr5.4:33444989-33445008 | MS.gene53185:intron | 45.0% |
| !!! | GTTTTGACTACTGCTGTGAC+AGG | + | chr5.4:33444176-33444195 | None:intergenic | 45.0% |
| !!! | AATTTTTTCAATTAATAAAT+AGG | + | chr5.4:33443589-33443608 | None:intergenic | 5.0% |
| ACTGCAGCGTTAAGCTGGTT+CGG | + | chr5.4:33444936-33444955 | None:intergenic | 50.0% | |
| AGCCGATTGCCTCTTGGAAT+TGG | - | chr5.4:33445218-33445237 | MS.gene53185:intron | 50.0% | |
| ATGCTGGTCCATGCTTAAGG+GGG | - | chr5.4:33444241-33444260 | MS.gene53185:CDS | 50.0% | |
| CTGCAGGTGATGTTGTCGAT+CGG | - | chr5.4:33445579-33445598 | MS.gene53185:intron | 50.0% | |
| GACTCGAGTCCAATTCCAAG+AGG | + | chr5.4:33445230-33445249 | None:intergenic | 50.0% | |
| GGCTTGGATACAAGTGAGTG+AGG | - | chr5.4:33444142-33444161 | MS.gene53185:CDS | 50.0% | |
| GGTACTTCGAGCAGGTTCTT+AGG | - | chr5.4:33445450-33445469 | MS.gene53185:intron | 50.0% | |
| GGTCGCCACAAGGTTGTTAT+AGG | - | chr5.4:33445522-33445541 | MS.gene53185:intron | 50.0% | |
| GTGAATAGCCGATTGCCTCT+TGG | - | chr5.4:33445212-33445231 | MS.gene53185:intron | 50.0% | |
| GTTCAAGCCGTTGACGAACA+AGG | - | chr5.4:33444603-33444622 | MS.gene53185:intron | 50.0% | |
| TCAAGGGCAGCTCTCATGTA+AGG | + | chr5.4:33445281-33445300 | None:intergenic | 50.0% | |
| TCGAAACTCAAGCTCGAACC+CGG | + | chr5.4:33443014-33443033 | None:intergenic | 50.0% | |
| TTCGTAGTCGCCGTGGAAAA+GGG | + | chr5.4:33445672-33445691 | None:intergenic | 50.0% | |
| TTTCCACGGCGACTACGAAA+TGG | - | chr5.4:33445673-33445692 | MS.gene53185:intron | 50.0% | |
| TTTCCATTTCGTAGTCGCCG+TGG | + | chr5.4:33445679-33445698 | None:intergenic | 50.0% | |
| TTTCGACTGCAGCGTTAAGC+TGG | + | chr5.4:33444941-33444960 | None:intergenic | 50.0% | |
| TTTCGTAGTCGCCGTGGAAA+AGG | + | chr5.4:33445673-33445692 | None:intergenic | 50.0% | |
| ! | AGAGTGCCCTTGTTCGTCAA+CGG | + | chr5.4:33444613-33444632 | None:intergenic | 50.0% |
| !! | TTTGAGGCCTCCCTTTTCCA+CGG | - | chr5.4:33445659-33445678 | MS.gene53185:intron | 50.0% |
| AGCAGCTGAGCTCTACTTCG+AGG | - | chr5.4:33444286-33444305 | MS.gene53185:CDS | 55.0% | |
| CGATCGACAACATCACCTGC+AGG | + | chr5.4:33445581-33445600 | None:intergenic | 55.0% | |
| CGTCGCAAGCCAACCTAATC+AGG | - | chr5.4:33445346-33445365 | MS.gene53185:intron | 55.0% | |
| CTTCGAGCAGGTTCTTAGGG+AGG | - | chr5.4:33445454-33445473 | MS.gene53185:intron | 55.0% | |
| TGCTGGTCCATGCTTAAGGG+GGG | - | chr5.4:33444242-33444261 | MS.gene53185:CDS | 55.0% | |
| ! | AGGGAGGCACATTCTCATCC+TGG | - | chr5.4:33445470-33445489 | MS.gene53185:intron | 55.0% |
| ! | GGGAGGCACATTCTCATCCT+GGG | - | chr5.4:33445471-33445490 | MS.gene53185:intron | 55.0% |
| !! | AGTGGCGCGAAGGGTATCAA+GGG | + | chr5.4:33445297-33445316 | None:intergenic | 55.0% |
| !! | GCGCCACTGGTTTGCCAATA+TGG | - | chr5.4:33445309-33445328 | MS.gene53185:intron | 55.0% |
| CTAGGCACGGTACTTCGAGC+AGG | - | chr5.4:33445442-33445461 | MS.gene53185:intron | 60.0% | |
| CTTGATACCCTTCGCGCCAC+TGG | - | chr5.4:33445296-33445315 | MS.gene53185:intron | 60.0% | |
| GTAGTCGCCGTGGAAAAGGG+AGG | + | chr5.4:33445669-33445688 | None:intergenic | 60.0% | |
| TAACTTGGCAGGCCCGCAAG+AGG | - | chr5.4:33444571-33444590 | MS.gene53185:intron | 60.0% | |
| TGGCAAACCAGTGGCGCGAA+GGG | + | chr5.4:33445306-33445325 | None:intergenic | 60.0% | |
| TTGGCAAACCAGTGGCGCGA+AGG | + | chr5.4:33445307-33445326 | None:intergenic | 60.0% | |
| !! | CAGTGGCGCGAAGGGTATCA+AGG | + | chr5.4:33445298-33445317 | None:intergenic | 60.0% |
| TGGACAGCGTGGTCGCCACA+AGG | - | chr5.4:33445512-33445531 | MS.gene53185:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 33442551 | 33445802 | 33442551 | ID=MS.gene53185 |
| chr5.4 | mRNA | 33442551 | 33445802 | 33442551 | ID=MS.gene53185.t1;Parent=MS.gene53185 |
| chr5.4 | exon | 33445763 | 33445802 | 33445763 | ID=MS.gene53185.t1.exon1;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33445763 | 33445802 | 33445763 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| chr5.4 | exon | 33444516 | 33444562 | 33444516 | ID=MS.gene53185.t1.exon2;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33444516 | 33444562 | 33444516 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| chr5.4 | exon | 33444227 | 33444429 | 33444227 | ID=MS.gene53185.t1.exon3;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33444227 | 33444429 | 33444227 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| chr5.4 | exon | 33444046 | 33444193 | 33444046 | ID=MS.gene53185.t1.exon4;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33444046 | 33444193 | 33444046 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| chr5.4 | exon | 33443861 | 33443959 | 33443861 | ID=MS.gene53185.t1.exon5;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33443861 | 33443959 | 33443861 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| chr5.4 | exon | 33442986 | 33443771 | 33442986 | ID=MS.gene53185.t1.exon6;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33442986 | 33443771 | 33442986 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| chr5.4 | exon | 33442551 | 33442907 | 33442551 | ID=MS.gene53185.t1.exon7;Parent=MS.gene53185.t1 |
| chr5.4 | CDS | 33442551 | 33442907 | 33442551 | ID=cds.MS.gene53185.t1;Parent=MS.gene53185.t1 |
| Gene Sequence |
| Protein sequence |
