Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75410.t1 | XP_013453882.1 | 95.7 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.00E+00 | 1117.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75410.t1 | A0A1P8B8F8 | 38.9 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 3.9e-114 | 413.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75410.t1 | A0A072UFN4 | 95.7 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0e+00 | 1117.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene52090 | MS.gene75410 | PPI |
| MS.gene75410 | MS.gene59021 | PPI |
| MS.gene75410 | MS.gene003507 | PPI |
| MS.gene74061 | MS.gene75410 | PPI |
| MS.gene75410 | MS.gene032541 | PPI |
| MS.gene057723 | MS.gene75410 | PPI |
| MS.gene75410 | MS.gene68749 | PPI |
| MS.gene014213 | MS.gene75410 | PPI |
| MS.gene99993 | MS.gene75410 | PPI |
| MS.gene75410 | MS.gene68149 | PPI |
| MS.gene063101 | MS.gene75410 | PPI |
| MS.gene75410 | MS.gene53185 | PPI |
| MS.gene003507 | MS.gene75410 | PPI |
| MS.gene90963 | MS.gene75410 | PPI |
| MS.gene054660 | MS.gene75410 | PPI |
| MS.gene044959 | MS.gene75410 | PPI |
| MS.gene62099 | MS.gene75410 | PPI |
| MS.gene062453 | MS.gene75410 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75410.t1 | MTR_5g049180 | 95.722 | 561 | 24 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1130 |
| MS.gene75410.t1 | MTR_7g024420 | 81.350 | 563 | 105 | 0 | 1 | 563 | 1 | 563 | 0.0 | 956 |
| MS.gene75410.t1 | MTR_4g074070 | 73.070 | 557 | 150 | 0 | 1 | 557 | 1 | 557 | 0.0 | 881 |
| MS.gene75410.t1 | MTR_1g106200 | 48.059 | 541 | 276 | 3 | 9 | 544 | 18 | 558 | 0.0 | 544 |
| MS.gene75410.t1 | MTR_1g106790 | 47.398 | 538 | 277 | 4 | 8 | 540 | 17 | 553 | 0.0 | 535 |
| MS.gene75410.t1 | MTR_1g106910 | 47.397 | 557 | 285 | 5 | 4 | 553 | 10 | 565 | 0.0 | 533 |
| MS.gene75410.t1 | MTR_1g106770 | 47.885 | 520 | 267 | 3 | 29 | 544 | 4 | 523 | 2.90e-179 | 520 |
| MS.gene75410.t1 | MTR_1g106200 | 43.623 | 541 | 267 | 4 | 9 | 544 | 24 | 531 | 4.30e-161 | 474 |
| MS.gene75410.t1 | MTR_3g117800 | 39.964 | 548 | 294 | 11 | 9 | 548 | 1 | 521 | 1.06e-130 | 395 |
| MS.gene75410.t1 | MTR_3g117800 | 43.450 | 458 | 248 | 7 | 99 | 548 | 16 | 470 | 1.70e-126 | 383 |
| MS.gene75410.t1 | MTR_3g117800 | 44.111 | 433 | 233 | 5 | 122 | 548 | 11 | 440 | 1.17e-123 | 375 |
| MS.gene75410.t1 | MTR_1g017020 | 30.657 | 548 | 324 | 15 | 35 | 543 | 353 | 883 | 2.46e-68 | 240 |
| MS.gene75410.t1 | MTR_3g103610 | 30.241 | 539 | 308 | 18 | 43 | 537 | 200 | 714 | 2.38e-64 | 226 |
| MS.gene75410.t1 | MTR_4g121520 | 44.059 | 202 | 87 | 1 | 305 | 506 | 223 | 398 | 9.10e-46 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene75410.t1 | AT4G33840 | 57.301 | 541 | 221 | 5 | 16 | 548 | 19 | 557 | 0.0 | 664 |
| MS.gene75410.t1 | AT4G33830 | 56.295 | 556 | 234 | 6 | 7 | 557 | 11 | 562 | 0.0 | 653 |
| MS.gene75410.t1 | AT4G33860 | 56.604 | 530 | 223 | 4 | 16 | 540 | 19 | 546 | 0.0 | 645 |
| MS.gene75410.t1 | AT4G33810 | 38.899 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 1.93e-138 | 417 |
| MS.gene75410.t1 | AT4G33810 | 38.899 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 1.93e-138 | 417 |
| MS.gene75410.t1 | AT4G33810 | 38.899 | 563 | 311 | 7 | 3 | 553 | 12 | 553 | 1.93e-138 | 417 |
| MS.gene75410.t1 | AT4G33810 | 42.767 | 477 | 262 | 5 | 87 | 553 | 38 | 513 | 1.55e-135 | 408 |
| MS.gene75410.t1 | AT4G33810 | 42.767 | 477 | 262 | 5 | 87 | 553 | 38 | 513 | 1.55e-135 | 408 |
| MS.gene75410.t1 | AT4G33820 | 37.824 | 579 | 317 | 9 | 5 | 561 | 8 | 565 | 5.21e-135 | 408 |
| MS.gene75410.t1 | AT4G38650 | 39.139 | 534 | 286 | 10 | 22 | 542 | 34 | 541 | 6.75e-130 | 394 |
| MS.gene75410.t1 | AT2G14690 | 35.199 | 554 | 314 | 8 | 18 | 553 | 28 | 554 | 3.13e-117 | 362 |
| MS.gene75410.t1 | AT4G38300 | 45.136 | 257 | 129 | 2 | 192 | 448 | 12 | 256 | 4.05e-73 | 237 |
| MS.gene75410.t1 | AT1G58370 | 29.834 | 543 | 324 | 16 | 35 | 537 | 362 | 887 | 1.98e-66 | 235 |
| MS.gene75410.t1 | AT1G58370 | 29.834 | 543 | 324 | 16 | 35 | 537 | 390 | 915 | 2.87e-66 | 235 |
| MS.gene75410.t1 | AT4G08160 | 28.571 | 546 | 341 | 15 | 35 | 540 | 190 | 726 | 7.95e-61 | 217 |
| MS.gene75410.t1 | AT1G10050 | 29.151 | 542 | 333 | 17 | 43 | 546 | 550 | 1078 | 1.58e-60 | 219 |
| MS.gene75410.t1 | AT1G10050 | 29.151 | 542 | 333 | 17 | 43 | 546 | 518 | 1046 | 2.05e-60 | 219 |
| MS.gene75410.t1 | AT1G10050 | 29.151 | 542 | 333 | 17 | 43 | 546 | 518 | 1046 | 2.05e-60 | 219 |
| MS.gene75410.t1 | AT4G08160 | 29.622 | 476 | 288 | 13 | 35 | 471 | 190 | 657 | 4.09e-57 | 205 |
Find 146 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATCTTCTTGATATATTT+TGG | 0.098842 | 5.4:+39593130 | None:intergenic |
| ATAATACTTCTGTTGAAATT+TGG | 0.134584 | 5.4:-39593990 | MS.gene75410:CDS |
| TCAGAGGCCACAATATATTT+TGG | 0.162947 | 5.4:-39593438 | MS.gene75410:CDS |
| ACAACTGAAGGATTTAAATT+TGG | 0.187136 | 5.4:-39594234 | MS.gene75410:CDS |
| CTGCCACTGGTTTGCCAATA+TGG | 0.191945 | 5.4:-39592997 | MS.gene75410:CDS |
| GCAATAGTGCATATCATTAT+TGG | 0.208863 | 5.4:-39593594 | MS.gene75410:CDS |
| CAGAAAATTTACCTACAAAA+TGG | 0.235874 | 5.4:-39594927 | MS.gene75410:CDS |
| AATAGAACATAGAGAATCTT+TGG | 0.248709 | 5.4:-39595003 | MS.gene75410:CDS |
| GGATTGCATTATTCTTTATC+TGG | 0.257416 | 5.4:-39594906 | MS.gene75410:intron |
| ATGTGGTTGATTTCTGTTAT+TGG | 0.257701 | 5.4:+39594962 | None:intergenic |
| ACAATTCGGCTCAGCGTAAA+TGG | 0.263557 | 5.4:+39594206 | None:intergenic |
| CTATGTGTCATCCTACTTGC+AGG | 0.291154 | 5.4:-39595667 | MS.gene75410:intron |
| AATGAAGTTCACAACATTGA+TGG | 0.301444 | 5.4:-39593220 | MS.gene75410:CDS |
| AAGCAATTGCCTCTTGGAAT+TGG | 0.301823 | 5.4:-39593088 | MS.gene75410:CDS |
| TGTAGTCCATCATTCAGTTC+TGG | 0.305480 | 5.4:+39595053 | None:intergenic |
| ATCCTCAATACCAACCTTCT+TGG | 0.306095 | 5.4:-39593411 | MS.gene75410:CDS |
| GTAATAGATATTCTTGCATT+TGG | 0.328996 | 5.4:+39593670 | None:intergenic |
| TCGTTCATGGTGGCGGCAGC+TGG | 0.336095 | 5.4:-39590912 | MS.gene75410:CDS |
| GATCTGGATCAGTTCTTTGC+TGG | 0.341901 | 5.4:-39590823 | MS.gene75410:CDS |
| TGCTCGTCAGTGACAGATCT+TGG | 0.342668 | 5.4:-39590871 | MS.gene75410:CDS |
| GAATTGTTGGTCTATGCTTA+AGG | 0.343869 | 5.4:-39594190 | MS.gene75410:CDS |
| TCGAAAACGCCGAGAGATAT+AGG | 0.350837 | 5.4:+39590961 | None:intergenic |
| GCTCAGGATGTATTTGTTCA+TGG | 0.357032 | 5.4:+39593615 | None:intergenic |
| ATCATTATTGGTTCGCATCT+AGG | 0.357864 | 5.4:-39593582 | MS.gene75410:CDS |
| CTACAAGGATGGACAGCATT+TGG | 0.360370 | 5.4:-39595035 | MS.gene75410:CDS |
| GCAATTGCTTATTCCAACTT+TGG | 0.363618 | 5.4:+39593101 | None:intergenic |
| CCATTGTACTGAGGCCTTTG+TGG | 0.366505 | 5.4:+39595092 | None:intergenic |
| CATTGTACTGAGGCCTTTGT+GGG | 0.387812 | 5.4:+39595093 | None:intergenic |
| GTTATCGACTTTACCTGATT+TGG | 0.388943 | 5.4:+39592947 | None:intergenic |
| TCTAATTCAGTGATCCATAT+TGG | 0.391697 | 5.4:+39592983 | None:intergenic |
| ATATTCTTGCATTTGGTAAA+GGG | 0.397992 | 5.4:+39593677 | None:intergenic |
| ATTACAATGCCTCGGATCCC+TGG | 0.399735 | 5.4:+39592692 | None:intergenic |
| TGTTGCAAGCCAGCCAAATC+AGG | 0.400763 | 5.4:-39592960 | MS.gene75410:intron |
| CTCGACACCCTTGCTGCCAC+TGG | 0.401901 | 5.4:-39593010 | MS.gene75410:CDS |
| AATGCTGGCACTATGATCAT+AGG | 0.417516 | 5.4:+39595217 | None:intergenic |
| TGGAATAAGCAATTGCCTCT+TGG | 0.419115 | 5.4:-39593094 | MS.gene75410:CDS |
| AGATACAAGGACCAGCTAAT+TGG | 0.419860 | 5.4:-39593322 | MS.gene75410:CDS |
| GATATTCTTGCATTTGGTAA+AGG | 0.422820 | 5.4:+39593676 | None:intergenic |
| TTTCGACTGCATTGTTAAGT+TGG | 0.426420 | 5.4:+39593368 | None:intergenic |
| AATTGTTGGTCTATGCTTAA+GGG | 0.427116 | 5.4:-39594189 | MS.gene75410:CDS |
| GGTTAGTGAAATTTAAATGT+TGG | 0.428157 | 5.4:-39592045 | MS.gene75410:CDS |
| TACAAGGATGGACAGCATTT+GGG | 0.431640 | 5.4:-39595034 | MS.gene75410:CDS |
| GGTCTCACAGCGGACGCAAC+AGG | 0.436625 | 5.4:-39594165 | MS.gene75410:CDS |
| TTTACGCTGAGCCGAATTGT+TGG | 0.438915 | 5.4:-39594203 | MS.gene75410:CDS |
| ACTGAAGGATTTAAATTTGG+TGG | 0.441063 | 5.4:-39594231 | MS.gene75410:CDS |
| GCTCGTCAGTGACAGATCTT+GGG | 0.445036 | 5.4:-39590870 | MS.gene75410:CDS |
| TCCTCAATACCAACCTTCTT+GGG | 0.445458 | 5.4:-39593410 | MS.gene75410:CDS |
| GCTCTCATGTAAGGCAAGTT+GGG | 0.446579 | 5.4:+39593037 | None:intergenic |
| GGCTCTCATGTAAGGCAAGT+TGG | 0.452068 | 5.4:+39593036 | None:intergenic |
| TCATTCTTTGAAAGTAAACT+AGG | 0.473187 | 5.4:-39593268 | MS.gene75410:CDS |
| ATAGAACATAGAGAATCTTT+GGG | 0.481544 | 5.4:-39595002 | MS.gene75410:CDS |
| ACCCAAGAAGGTTGGTATTG+AGG | 0.486924 | 5.4:+39593409 | None:intergenic |
| TTGGTTCGCATCTAGGTTCA+CGG | 0.486946 | 5.4:-39593575 | MS.gene75410:CDS |
| TAGTTTACTTTCAAAGAATG+AGG | 0.487897 | 5.4:+39593270 | None:intergenic |
| TTGTTCATGGCACTTCCAAA+TGG | 0.489868 | 5.4:+39593628 | None:intergenic |
| ATTTGTGTAGGCAGTGTACT+TGG | 0.490660 | 5.4:-39592744 | MS.gene75410:intron |
| TCGAGGGAGGCTCTCATGTA+AGG | 0.492315 | 5.4:+39593028 | None:intergenic |
| CGACAAACTGATTTATGAGT+GGG | 0.494104 | 5.4:-39592585 | MS.gene75410:CDS |
| CTGCCGCCACCATGAACGAT+GGG | 0.495694 | 5.4:+39590916 | None:intergenic |
| CAAGGACCAGCTAATTGGTT+GGG | 0.496790 | 5.4:-39593317 | MS.gene75410:CDS |
| TTCTTTGCTGGTAAGACTCT+AGG | 0.501078 | 5.4:-39590811 | MS.gene75410:CDS |
| CAGCTCTCTCCTATATCTCT+CGG | 0.501615 | 5.4:-39590970 | MS.gene75410:CDS |
| TAGGAGAGAGCTGGTGCGGA+GGG | 0.503886 | 5.4:+39590980 | None:intergenic |
| TCGACTTTACCTGATTTGGC+TGG | 0.510163 | 5.4:+39592951 | None:intergenic |
| TTAACAATGCAGTCGAAAAG+AGG | 0.510402 | 5.4:-39593363 | MS.gene75410:CDS |
| AATGATATGCACTATTGCTC+AGG | 0.510678 | 5.4:+39593599 | None:intergenic |
| TCTATTACAATGAAGAGGTA+TGG | 0.515108 | 5.4:-39593655 | MS.gene75410:CDS |
| TCAAGAACAGAATATTGAAA+AGG | 0.517817 | 5.4:-39593917 | MS.gene75410:intron |
| CAACATCCCAACCAATTAGC+TGG | 0.523794 | 5.4:+39593311 | None:intergenic |
| AATTTCAAGAATTTGCCTAC+AGG | 0.527179 | 5.4:-39592617 | MS.gene75410:CDS |
| ATAGGAGAGAGCTGGTGCGG+AGG | 0.527773 | 5.4:+39590979 | None:intergenic |
| TTAAGCATAGACCAACAATT+CGG | 0.529114 | 5.4:+39594192 | None:intergenic |
| GTACTACTACGTTCTTCTTG+CGG | 0.534563 | 5.4:+39593722 | None:intergenic |
| TTCTGTTGTGTCAAGATACA+AGG | 0.535595 | 5.4:-39593335 | MS.gene75410:CDS |
| CACGGTGGTGCGATGAGCTG+CGG | 0.544143 | 5.4:-39591006 | MS.gene75410:CDS |
| TTACAATGCCTCGGATCCCT+GGG | 0.544854 | 5.4:+39592693 | None:intergenic |
| CACTCTCACCCAGGGATCCG+AGG | 0.548167 | 5.4:-39592701 | MS.gene75410:CDS |
| GAGAGAGCTTACTTCAATGC+TGG | 0.548545 | 5.4:+39595202 | None:intergenic |
| GGCAGCAAGGGTGTCGAGGG+AGG | 0.552078 | 5.4:+39593015 | None:intergenic |
| AGATAAGAGAGATCCAAAGT+TGG | 0.552172 | 5.4:-39593114 | MS.gene75410:CDS |
| TGGCAAACCAGTGGCAGCAA+GGG | 0.554004 | 5.4:+39593003 | None:intergenic |
| GAATGATTATAATACTATTG+AGG | 0.555610 | 5.4:-39593179 | MS.gene75410:CDS |
| GAGAGCGAAGGTACCCAAGA+AGG | 0.556728 | 5.4:+39593397 | None:intergenic |
| ACTATTGAGGATAGTAGAGA+TGG | 0.560205 | 5.4:-39593166 | MS.gene75410:CDS |
| CAGTGGCAGCAAGGGTGTCG+AGG | 0.563868 | 5.4:+39593011 | None:intergenic |
| CTTGGAGCAAGTTCTTAAAG+AGG | 0.564456 | 5.4:-39592726 | MS.gene75410:CDS |
| GCTGCCGCCACCATGAACGA+TGG | 0.567092 | 5.4:+39590915 | None:intergenic |
| AGTGGCAGCAAGGGTGTCGA+GGG | 0.570712 | 5.4:+39593012 | None:intergenic |
| AAAGAGGCACACTCTCACCC+AGG | 0.573728 | 5.4:-39592710 | MS.gene75410:CDS |
| ACAAGGACCAGCTAATTGGT+TGG | 0.574029 | 5.4:-39593318 | MS.gene75410:CDS |
| CTGTCCACATTACAATGCCT+CGG | 0.577744 | 5.4:+39592684 | None:intergenic |
| CGAGAGATATAGGAGAGAGC+TGG | 0.578016 | 5.4:+39590971 | None:intergenic |
| TTGGCAAACCAGTGGCAGCA+AGG | 0.582193 | 5.4:+39593002 | None:intergenic |
| TGTTGGTCTATGCTTAAGGG+TGG | 0.586142 | 5.4:-39594186 | MS.gene75410:CDS |
| AAATGTCCCGGTGACAGCAA+TGG | 0.591314 | 5.4:-39594262 | MS.gene75410:CDS |
| TGAATGATGGACTACAAGGA+TGG | 0.593461 | 5.4:-39595046 | MS.gene75410:CDS |
| AGTGAGTGAGGCAAATGTCC+CGG | 0.594400 | 5.4:-39594274 | MS.gene75410:CDS |
| GAACTGAATGATGGACTACA+AGG | 0.594598 | 5.4:-39595050 | MS.gene75410:CDS |
| GAATATCTATTACAATGAAG+AGG | 0.596129 | 5.4:-39593660 | MS.gene75410:CDS |
| CATTTGAAAATGAAATGAAG+TGG | 0.596860 | 5.4:-39593546 | MS.gene75410:CDS |
| GATATAGGAGAGAGCTGGTG+CGG | 0.599971 | 5.4:+39590976 | None:intergenic |
| GCAATGGTCAAAACAACTGA+AGG | 0.603923 | 5.4:-39594246 | MS.gene75410:CDS |
| GCCGCCACCATGAACGATGG+GGG | 0.604639 | 5.4:+39590918 | None:intergenic |
| CCACAAAGGCCTCAGTACAA+TGG | 0.608931 | 5.4:-39595092 | MS.gene75410:CDS |
| ATCTTTGGGTAACAAATATG+TGG | 0.609080 | 5.4:-39594988 | MS.gene75410:CDS |
| GCGAAGGTACCCAAGAAGGT+TGG | 0.609945 | 5.4:+39593401 | None:intergenic |
| GCATTGTAATGTGGACAGCA+TGG | 0.610898 | 5.4:-39592679 | MS.gene75410:CDS |
| GAATGAATATGCACAAGGCA+AGG | 0.611352 | 5.4:-39593518 | MS.gene75410:CDS |
| GATCCTCCCAAAATATATTG+TGG | 0.612097 | 5.4:+39593431 | None:intergenic |
| ATGATTCCTCCATTGTACTG+AGG | 0.614806 | 5.4:+39595083 | None:intergenic |
| AGTTGGTCTGCTGAGAGCGA+AGG | 0.615345 | 5.4:+39593385 | None:intergenic |
| TTGAAGCCGATGTGATGCTA+CGG | 0.615957 | 5.4:-39593486 | MS.gene75410:CDS |
| TCGACAAACTGATTTATGAG+TGG | 0.617298 | 5.4:-39592586 | MS.gene75410:CDS |
| TGCCGCCACCATGAACGATG+GGG | 0.619190 | 5.4:+39590917 | None:intergenic |
| CGTCAGTGACAGATCTTGGG+CGG | 0.619752 | 5.4:-39590867 | MS.gene75410:CDS |
| ATAATCATTCATGAACAAAG+TGG | 0.625091 | 5.4:+39593192 | None:intergenic |
| AAATGTTGGCAAAATCACAC+AGG | 0.627006 | 5.4:-39592031 | MS.gene75410:intron |
| GTAGGATGACACATAGCAGA+AGG | 0.636550 | 5.4:+39595674 | None:intergenic |
| TGGACAGCATGGTCGCCACA+AGG | 0.636792 | 5.4:-39592668 | MS.gene75410:CDS |
| CTCATGTAAGGCAAGTTGGG+AGG | 0.637521 | 5.4:+39593040 | None:intergenic |
| TCCGATGTAGCTTCTACGCA+CGG | 0.640022 | 5.4:-39591024 | MS.gene75410:intron |
| GGATCCGAGGCATTGTAATG+TGG | 0.640083 | 5.4:-39592688 | MS.gene75410:CDS |
| TCTGTCACTGACGAGCAGAT+CGG | 0.641456 | 5.4:+39590877 | None:intergenic |
| TGCATACCGTAGCATCACAT+CGG | 0.645236 | 5.4:+39593480 | None:intergenic |
| GTGGTTACAAACCTGCAAGT+AGG | 0.646101 | 5.4:+39595656 | None:intergenic |
| AGTGTTTGGCACACCCACAA+AGG | 0.649093 | 5.4:-39595106 | MS.gene75410:CDS |
| CAAAGGCCTCAGTACAATGG+AGG | 0.654580 | 5.4:-39595089 | MS.gene75410:CDS |
| TTGTCGACAACATCGCCTGT+AGG | 0.657951 | 5.4:+39592602 | None:intergenic |
| AGCTTGGATACAAGTGAGTG+AGG | 0.658683 | 5.4:-39594286 | MS.gene75410:CDS |
| ACAAACTGATTTATGAGTGG+GGG | 0.660294 | 5.4:-39592583 | MS.gene75410:CDS |
| GATCCATATTGGCAAACCAG+TGG | 0.665618 | 5.4:+39592994 | None:intergenic |
| AAACACGGTATTGCTGTCAG+AGG | 0.669925 | 5.4:-39593454 | MS.gene75410:CDS |
| GCATCACCGTGGTCAAATCG+CGG | 0.677347 | 5.4:+39590750 | None:intergenic |
| CTACGGTATGCAAAGAAACA+CGG | 0.679684 | 5.4:-39593469 | MS.gene75410:CDS |
| GACTCAAGTCCAATTCCAAG+AGG | 0.679929 | 5.4:+39593079 | None:intergenic |
| AAGAGGCACACTCTCACCCA+GGG | 0.681086 | 5.4:-39592709 | MS.gene75410:CDS |
| TTCTGTGAGACACTATCATG+TGG | 0.686906 | 5.4:+39594945 | None:intergenic |
| TTGAATCGCGGAAAACACGT+CGG | 0.692158 | 5.4:+39590786 | None:intergenic |
| AAACACGTGTGGTTGAATCG+CGG | 0.692295 | 5.4:+39590774 | None:intergenic |
| GACAAACTGATTTATGAGTG+GGG | 0.695455 | 5.4:-39592584 | MS.gene75410:CDS |
| CAAATCGCGGAAAACACGTG+TGG | 0.696832 | 5.4:+39590763 | None:intergenic |
| TACACGAATGAATATGCACA+AGG | 0.712550 | 5.4:-39593523 | MS.gene75410:CDS |
| GTACAAGTACTTGATGAACA+AGG | 0.717039 | 5.4:-39593703 | MS.gene75410:CDS |
| CACATCCTAAAACAACCTTG+TGG | 0.735949 | 5.4:+39592653 | None:intergenic |
| GCTTAAGGGTGGTCTCACAG+CGG | 0.764795 | 5.4:-39594175 | MS.gene75410:CDS |
| GATGTAGCTTCTACGCACGG+TGG | 0.799714 | 5.4:-39591021 | MS.gene75410:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGAAATTTGTATAAAT+TGG | + | chr5.4:39594048-39594067 | None:intergenic | 10.0% |
| !! | AAATATTGTTAGAAAATAAA+CGG | - | chr5.4:39594566-39594585 | MS.gene75410:intron | 10.0% |
| !! | AATAGAAATTTGTATAAATT+GGG | + | chr5.4:39594047-39594066 | None:intergenic | 10.0% |
| !! | ATGTGTAAAATAAATAAAAA+GGG | - | chr5.4:39592665-39592684 | MS.gene75410:CDS | 10.0% |
| !! | TATGTGTAAAATAAATAAAA+AGG | - | chr5.4:39592664-39592683 | MS.gene75410:CDS | 10.0% |
| !! | AATTATTACACTGTAAATAT+TGG | + | chr5.4:39594474-39594493 | None:intergenic | 15.0% |
| !! | ATTTATGCATTAACTAATTT+AGG | - | chr5.4:39593667-39593686 | MS.gene75410:CDS | 15.0% |
| !!! | AAAGTATAATTCTTCTTTTT+AGG | + | chr5.4:39593977-39593996 | None:intergenic | 15.0% |
| !!! | ATACTTTTAGTTTATTTCAT+TGG | - | chr5.4:39594173-39594192 | MS.gene75410:CDS | 15.0% |
| !!! | CTCTTTTATTTATTAGAATA+TGG | + | chr5.4:39594674-39594693 | None:intergenic | 15.0% |
| !!! | TCAAATTTTATTCTAATTGT+TGG | - | chr5.4:39591308-39591327 | MS.gene75410:intron | 15.0% |
| !! | AAAAGGTTTATATCTATGTT+TGG | - | chr5.4:39594769-39594788 | MS.gene75410:intron | 20.0% |
| !! | AAATACAACACTGTAATATA+AGG | + | chr5.4:39591111-39591130 | None:intergenic | 20.0% |
| !! | ATAATACTTCTGTTGAAATT+TGG | - | chr5.4:39592457-39592476 | MS.gene75410:CDS | 20.0% |
| !! | ATTGGATAAATCCTATTTAT+CGG | - | chr5.4:39592606-39592625 | MS.gene75410:CDS | 20.0% |
| !! | CAAAAAAAATTCCTCTATTA+TGG | + | chr5.4:39594641-39594660 | None:intergenic | 20.0% |
| !! | GAATGATTATAATACTATTG+AGG | - | chr5.4:39593268-39593287 | MS.gene75410:CDS | 20.0% |
| !! | TAAAATCATAAGTAACTTCT+AGG | + | chr5.4:39591155-39591174 | None:intergenic | 20.0% |
| !! | TAATAATTCGATTGTACTAT+GGG | - | chr5.4:39592126-39592145 | MS.gene75410:intron | 20.0% |
| !! | TTAAAATGTAATATCCTGTT+AGG | - | chr5.4:39595246-39595265 | MS.gene75410:intron | 20.0% |
| !!! | AACATAGATATAAACCTTTT+TGG | + | chr5.4:39594769-39594788 | None:intergenic | 20.0% |
| !!! | ATTTTAGTCTATAACTTTGT+TGG | - | chr5.4:39592096-39592115 | MS.gene75410:intron | 20.0% |
| !!! | CAACTATTGATTTTACTATT+TGG | + | chr5.4:39590859-39590878 | None:intergenic | 20.0% |
| !!! | CACATTTCACAATAATTTTA+TGG | + | chr5.4:39595010-39595029 | None:intergenic | 20.0% |
| !!! | CTTATCTTCTTGATATATTT+TGG | + | chr5.4:39593320-39593339 | None:intergenic | 20.0% |
| !!! | TATTGAAATTATGCTTTTGT+AGG | - | chr5.4:39594323-39594342 | MS.gene75410:intron | 20.0% |
| !!! | TGCATTGTTTGTAAATATTT+TGG | + | chr5.4:39595067-39595086 | None:intergenic | 20.0% |
| !!! | TTAATCTTTTATAATTCTGC+TGG | - | chr5.4:39591978-39591997 | MS.gene75410:intron | 20.0% |
| !!! | TTAGTTCTTGCTTTTTATTT+AGG | + | chr5.4:39594885-39594904 | None:intergenic | 20.0% |
| !!! | TTGTAAATATTTTGGCTTAT+TGG | + | chr5.4:39595059-39595078 | None:intergenic | 20.0% |
| !!! | TTTTAGTCTATAACTTTGTT+GGG | - | chr5.4:39592097-39592116 | MS.gene75410:intron | 20.0% |
| ! | AAAATTCCTCTATTATGGTT+AGG | + | chr5.4:39594636-39594655 | None:intergenic | 25.0% |
| ! | AATAGAACATAGAGAATCTT+TGG | - | chr5.4:39591444-39591463 | MS.gene75410:intron | 25.0% |
| ! | AATTATTAGCAACCTTCAAT+AGG | - | chr5.4:39592565-39592584 | MS.gene75410:CDS | 25.0% |
| ! | ACAACTGAAGGATTTAAATT+TGG | - | chr5.4:39592213-39592232 | MS.gene75410:intron | 25.0% |
| ! | ACATTAAGAAATCATAACCT+TGG | + | chr5.4:39590833-39590852 | None:intergenic | 25.0% |
| ! | AGTATAAAGTAAATCTAGCT+AGG | + | chr5.4:39591612-39591631 | None:intergenic | 25.0% |
| ! | ATAATCATTCATGAACAAAG+TGG | + | chr5.4:39593258-39593277 | None:intergenic | 25.0% |
| ! | ATAGAACATAGAGAATCTTT+GGG | - | chr5.4:39591445-39591464 | MS.gene75410:intron | 25.0% |
| ! | ATATTCTTGCATTTGGTAAA+GGG | + | chr5.4:39592773-39592792 | None:intergenic | 25.0% |
| ! | CAGAAAATTTACCTACAAAA+TGG | - | chr5.4:39591520-39591539 | MS.gene75410:intron | 25.0% |
| ! | CATTTGAAAATGAAATGAAG+TGG | - | chr5.4:39592901-39592920 | MS.gene75410:intron | 25.0% |
| ! | GAATATCTATTACAATGAAG+AGG | - | chr5.4:39592787-39592806 | MS.gene75410:intron | 25.0% |
| ! | GGTTAGTGAAATTTAAATGT+TGG | - | chr5.4:39594402-39594421 | MS.gene75410:intron | 25.0% |
| ! | GTAACATTTGAAAATGATCA+TGG | + | chr5.4:39591045-39591064 | None:intergenic | 25.0% |
| ! | GTAATAATTCGATTGTACTA+TGG | - | chr5.4:39592125-39592144 | MS.gene75410:intron | 25.0% |
| ! | GTAATAGATATTCTTGCATT+TGG | + | chr5.4:39592780-39592799 | None:intergenic | 25.0% |
| ! | TAATATTAGTATGATACCAC+AGG | - | chr5.4:39591187-39591206 | MS.gene75410:intron | 25.0% |
| ! | TAGGATTTATCCAATAATTG+AGG | + | chr5.4:39592601-39592620 | None:intergenic | 25.0% |
| ! | TAGTTTACTTTCAAAGAATG+AGG | + | chr5.4:39593180-39593199 | None:intergenic | 25.0% |
| ! | TATCACTGAATGGAAATAAT+AGG | - | chr5.4:39595333-39595352 | MS.gene75410:intron | 25.0% |
| ! | TCAAATGAATTATCACTGAA+TGG | - | chr5.4:39595323-39595342 | MS.gene75410:intron | 25.0% |
| ! | TCAAGAACAGAATATTGAAA+AGG | - | chr5.4:39592530-39592549 | MS.gene75410:CDS | 25.0% |
| ! | TGAGAAATGATAAGCATAAT+TGG | + | chr5.4:39593527-39593546 | None:intergenic | 25.0% |
| ! | TTTAGTTATTTGCTTCTACA+TGG | - | chr5.4:39594065-39594084 | MS.gene75410:intron | 25.0% |
| !! | AATAATGCAATCCATTTTGT+AGG | + | chr5.4:39591534-39591553 | None:intergenic | 25.0% |
| !! | AGTTTCAACTTAATTTGATC+TGG | - | chr5.4:39594242-39594261 | MS.gene75410:CDS | 25.0% |
| !! | CTTCATTTCATTTTCAAATG+CGG | + | chr5.4:39592901-39592920 | None:intergenic | 25.0% |
| !! | TCATTCTTTGAAAGTAAACT+AGG | - | chr5.4:39593179-39593198 | MS.gene75410:CDS | 25.0% |
| !! | TCTCACTAACATTTACATTT+TGG | - | chr5.4:39591264-39591283 | MS.gene75410:intron | 25.0% |
| !! | TTATCAATTCTGTCTACTTT+TGG | + | chr5.4:39595302-39595321 | None:intergenic | 25.0% |
| !!! | ATCTTCTTGATATATTTTGG+TGG | + | chr5.4:39593317-39593336 | None:intergenic | 25.0% |
| !!! | TATAAATTGGGTTGTTTTCT+TGG | + | chr5.4:39594035-39594054 | None:intergenic | 25.0% |
| !!! | TATCAATTCTGTCTACTTTT+GGG | + | chr5.4:39595301-39595320 | None:intergenic | 25.0% |
| !!! | TCTTCTTGATATATTTTGGT+GGG | + | chr5.4:39593316-39593335 | None:intergenic | 25.0% |
| AAAAATCCAGAACTGAATGA+TGG | - | chr5.4:39591388-39591407 | MS.gene75410:intron | 30.0% | |
| AAATCAAAACTAACCTTCAC+TGG | + | chr5.4:39594517-39594536 | None:intergenic | 30.0% | |
| AAATCCTATTTATCGGTCAT+TGG | - | chr5.4:39592613-39592632 | MS.gene75410:CDS | 30.0% | |
| AACCTTTCACGAAAAAACAA+TGG | - | chr5.4:39592499-39592518 | MS.gene75410:CDS | 30.0% | |
| AAGAATAATTCCTCTCGTAT+CGG | - | chr5.4:39591743-39591762 | MS.gene75410:intron | 30.0% | |
| AATGAAGTTCACAACATTGA+TGG | - | chr5.4:39593227-39593246 | MS.gene75410:CDS | 30.0% | |
| AATTGCGATTTAGTGTTACA+TGG | + | chr5.4:39591908-39591927 | None:intergenic | 30.0% | |
| AATTTCAAGAATTTGCCTAC+AGG | - | chr5.4:39593830-39593849 | MS.gene75410:intron | 30.0% | |
| ACTGAAGGATTTAAATTTGG+TGG | - | chr5.4:39592216-39592235 | MS.gene75410:intron | 30.0% | |
| AGAAATGCTAAAATCTGCTT+CGG | + | chr5.4:39594609-39594628 | None:intergenic | 30.0% | |
| AGAACTAAACCAGATATTGA+TGG | - | chr5.4:39594897-39594916 | MS.gene75410:intron | 30.0% | |
| AGGTTTATATCTATGTTTGG+TGG | - | chr5.4:39594772-39594791 | MS.gene75410:intron | 30.0% | |
| ATCTTTGGGTAACAAATATG+TGG | - | chr5.4:39591459-39591478 | MS.gene75410:intron | 30.0% | |
| ATTTCACTAACCTATACATG+AGG | + | chr5.4:39594394-39594413 | None:intergenic | 30.0% | |
| CTATGCAAAGTAGAGATATT+TGG | - | chr5.4:39594937-39594956 | MS.gene75410:CDS | 30.0% | |
| GATATTCTTGCATTTGGTAA+AGG | + | chr5.4:39592774-39592793 | None:intergenic | 30.0% | |
| GCAATAGTGCATATCATTAT+TGG | - | chr5.4:39592853-39592872 | MS.gene75410:intron | 30.0% | |
| GGATTGCATTATTCTTTATC+TGG | - | chr5.4:39591541-39591560 | MS.gene75410:intron | 30.0% | |
| GTACTTTAGCACTATACATT+TGG | + | chr5.4:39591782-39591801 | None:intergenic | 30.0% | |
| TACTTAGATCAAATTGTGGA+TGG | + | chr5.4:39591718-39591737 | None:intergenic | 30.0% | |
| TCCACAATTTGATCTAAGTA+AGG | - | chr5.4:39591718-39591737 | MS.gene75410:intron | 30.0% | |
| TCTAATTCAGTGATCCATAT+TGG | + | chr5.4:39593467-39593486 | None:intergenic | 30.0% | |
| TCTATTACAATGAAGAGGTA+TGG | - | chr5.4:39592792-39592811 | MS.gene75410:intron | 30.0% | |
| TTAAGCATAGACCAACAATT+CGG | + | chr5.4:39592258-39592277 | None:intergenic | 30.0% | |
| TTTCAATAAAACCTCATGAG+TGG | - | chr5.4:39590926-39590945 | MS.gene75410:CDS | 30.0% | |
| ! | AATTGTTGGTCTATGCTTAA+GGG | - | chr5.4:39592258-39592277 | MS.gene75410:intron | 30.0% |
| ! | AGATATTTGGAGCAAGAAAA+GGG | - | chr5.4:39594950-39594969 | MS.gene75410:CDS | 30.0% |
| ! | ATGTGGTTGATTTCTGTTAT+TGG | + | chr5.4:39591488-39591507 | None:intergenic | 30.0% |
| ! | CTTTTTCCTAACCATAATAG+AGG | - | chr5.4:39594627-39594646 | MS.gene75410:intron | 30.0% |
| ! | TACCAGTATAATGGAAATGA+AGG | - | chr5.4:39594218-39594237 | MS.gene75410:CDS | 30.0% |
| ! | TAGGACAAAATTTTACAGCA+AGG | - | chr5.4:39593198-39593217 | MS.gene75410:CDS | 30.0% |
| ! | TTTCCACTAATGATTTGTGT+AGG | - | chr5.4:39593691-39593710 | MS.gene75410:CDS | 30.0% |
| !! | AAGAGCATTGCTATTTGTTA+AGG | - | chr5.4:39594689-39594708 | MS.gene75410:intron | 30.0% |
| !! | ATCAATTCTGTCTACTTTTG+GGG | + | chr5.4:39595300-39595319 | None:intergenic | 30.0% |
| !! | GGTAAACTTGTTGCTTATAA+TGG | - | chr5.4:39594086-39594105 | MS.gene75410:intron | 30.0% |
| !! | TTTTCTCGCATTCTGAAAAA+AGG | + | chr5.4:39595200-39595219 | None:intergenic | 30.0% |
| !!! | ATTTTGAGGTACAATTCTTG+TGG | - | chr5.4:39592319-39592338 | MS.gene75410:intron | 30.0% |
| !!! | CTTCTTGATATATTTTGGTG+GGG | + | chr5.4:39593315-39593334 | None:intergenic | 30.0% |
| !!! | TATTTTGGCTTATTGGTTTC+TGG | + | chr5.4:39595052-39595071 | None:intergenic | 30.0% |
| AAATGTTGGCAAAATCACAC+AGG | - | chr5.4:39594416-39594435 | MS.gene75410:intron | 35.0% | |
| AATGATATGCACTATTGCTC+AGG | + | chr5.4:39592851-39592870 | None:intergenic | 35.0% | |
| ACGCATTTGTACCAGTATAA+TGG | - | chr5.4:39594209-39594228 | MS.gene75410:CDS | 35.0% | |
| ACTATTGAGGATAGTAGAGA+TGG | - | chr5.4:39593281-39593300 | MS.gene75410:CDS | 35.0% | |
| AGATAAGAGAGATCCAAAGT+TGG | - | chr5.4:39593333-39593352 | MS.gene75410:CDS | 35.0% | |
| AGTATGTTTGTGTTATGCGA+AGG | - | chr5.4:39591069-39591088 | MS.gene75410:intron | 35.0% | |
| ATTGGATTGATCCAACGATT+GGG | - | chr5.4:39592631-39592650 | MS.gene75410:CDS | 35.0% | |
| CAATCCAATGACCGATAAAT+AGG | + | chr5.4:39592620-39592639 | None:intergenic | 35.0% | |
| CAGGGACAACAGATAAAAAT+GGG | - | chr5.4:39593900-39593919 | MS.gene75410:intron | 35.0% | |
| GATCCTCCCAAAATATATTG+TGG | + | chr5.4:39593019-39593038 | None:intergenic | 35.0% | |
| GCAATTGCTTATTCCAACTT+TGG | + | chr5.4:39593349-39593368 | None:intergenic | 35.0% | |
| GCATATGTTGTGCAAATCAA+CGG | - | chr5.4:39594805-39594824 | MS.gene75410:intron | 35.0% | |
| GCCTTACTTAGATCAAATTG+TGG | + | chr5.4:39591722-39591741 | None:intergenic | 35.0% | |
| GTACAAGTACTTGATGAACA+AGG | - | chr5.4:39592744-39592763 | MS.gene75410:intron | 35.0% | |
| TAACCGTATAAACCTTTGCT+TGG | + | chr5.4:39590957-39590976 | None:intergenic | 35.0% | |
| TACACGAATGAATATGCACA+AGG | - | chr5.4:39592924-39592943 | MS.gene75410:intron | 35.0% | |
| TATGATAACCTTGCACTCAA+AGG | - | chr5.4:39595365-39595384 | MS.gene75410:intron | 35.0% | |
| TCACCAAGCAAAGGTTTATA+CGG | - | chr5.4:39590951-39590970 | MS.gene75410:CDS | 35.0% | |
| TCAGGGACAACAGATAAAAA+TGG | - | chr5.4:39593899-39593918 | MS.gene75410:intron | 35.0% | |
| TCCAATAATTGAGGTTCAAC+TGG | + | chr5.4:39592592-39592611 | None:intergenic | 35.0% | |
| TCCAGTTGAACCTCAATTAT+TGG | - | chr5.4:39592588-39592607 | MS.gene75410:CDS | 35.0% | |
| TCTGTCTTTACAATATCTGC+AGG | - | chr5.4:39594143-39594162 | MS.gene75410:CDS | 35.0% | |
| TGCCTTCATTTCCATTATAC+TGG | + | chr5.4:39594223-39594242 | None:intergenic | 35.0% | |
| TGTCTATATATTGTGTGTGC+TGG | - | chr5.4:39594286-39594305 | MS.gene75410:CDS | 35.0% | |
| TTAACAATGCAGTCGAAAAG+AGG | - | chr5.4:39593084-39593103 | MS.gene75410:CDS | 35.0% | |
| TTCTGTTGTGTCAAGATACA+AGG | - | chr5.4:39593112-39593131 | MS.gene75410:CDS | 35.0% | |
| TTTCGACTGCATTGTTAAGT+TGG | + | chr5.4:39593082-39593101 | None:intergenic | 35.0% | |
| ! | AACTCTGAGTCTTTTAGATC+TGG | - | chr5.4:39595608-39595627 | MS.gene75410:intron | 35.0% |
| ! | ACAAACTGATTTATGAGTGG+GGG | - | chr5.4:39593864-39593883 | MS.gene75410:intron | 35.0% |
| ! | ATCATAACCTTGGTGATTAG+TGG | + | chr5.4:39590823-39590842 | None:intergenic | 35.0% |
| ! | CAGAGGCCACAATATATTTT+GGG | - | chr5.4:39593010-39593029 | MS.gene75410:CDS | 35.0% |
| ! | CGACAAACTGATTTATGAGT+GGG | - | chr5.4:39593862-39593881 | MS.gene75410:intron | 35.0% |
| ! | GAATTGTTGGTCTATGCTTA+AGG | - | chr5.4:39592257-39592276 | MS.gene75410:intron | 35.0% |
| ! | GACAAACTGATTTATGAGTG+GGG | - | chr5.4:39593863-39593882 | MS.gene75410:intron | 35.0% |
| ! | GAGATATTTGGAGCAAGAAA+AGG | - | chr5.4:39594949-39594968 | MS.gene75410:CDS | 35.0% |
| ! | GATATTTGGAGCAAGAAAAG+GGG | - | chr5.4:39594951-39594970 | MS.gene75410:CDS | 35.0% |
| ! | GGGGGAGAAAAATATTTTCA+GGG | - | chr5.4:39593882-39593901 | MS.gene75410:intron | 35.0% |
| ! | GTTGTTGTTACCTCATGTAT+AGG | - | chr5.4:39594381-39594400 | MS.gene75410:intron | 35.0% |
| ! | GTTTAATATGAGAGTGTGAG+AGG | - | chr5.4:39591635-39591654 | MS.gene75410:intron | 35.0% |
| ! | TCAGAGGCCACAATATATTT+TGG | - | chr5.4:39593009-39593028 | MS.gene75410:CDS | 35.0% |
| ! | TCGACAAACTGATTTATGAG+TGG | - | chr5.4:39593861-39593880 | MS.gene75410:intron | 35.0% |
| ! | TGGGGGAGAAAAATATTTTC+AGG | - | chr5.4:39593881-39593900 | MS.gene75410:intron | 35.0% |
| !! | AAGAGGTATGGTTTTCCATT+TGG | - | chr5.4:39592804-39592823 | MS.gene75410:intron | 35.0% |
| !! | AGCATTGCTATTTGTTAAGG+AGG | - | chr5.4:39594692-39594711 | MS.gene75410:intron | 35.0% |
| !! | ATCATTATTGGTTCGCATCT+AGG | - | chr5.4:39592865-39592884 | MS.gene75410:intron | 35.0% |
| !! | GTTATCGACTTTACCTGATT+TGG | + | chr5.4:39593503-39593522 | None:intergenic | 35.0% |
| !! | GTTGATTTGCACAACATATG+CGG | + | chr5.4:39594806-39594825 | None:intergenic | 35.0% |
| !!! | GATCTGGCAGTTTATTTTGT+TGG | - | chr5.4:39594258-39594277 | MS.gene75410:CDS | 35.0% |
| !!! | GTCCATTGTTTTTTCGTGAA+AGG | + | chr5.4:39592504-39592523 | None:intergenic | 35.0% |
| !!! | TTTTTTCGTGAAAGGTTGCA+AGG | + | chr5.4:39592496-39592515 | None:intergenic | 35.0% |
| AAATGTCACGTGACCATCTA+TGG | + | chr5.4:39591681-39591700 | None:intergenic | 40.0% | |
| AACTTCCAATACTCCAGTGA+AGG | - | chr5.4:39594501-39594520 | MS.gene75410:intron | 40.0% | |
| AAGCAATTGCCTCTTGGAAT+TGG | - | chr5.4:39593359-39593378 | MS.gene75410:CDS | 40.0% | |
| AATGCTGGCACTATGATCAT+AGG | + | chr5.4:39591233-39591252 | None:intergenic | 40.0% | |
| ACTAACCTTCACTGGAGTAT+TGG | + | chr5.4:39594509-39594528 | None:intergenic | 40.0% | |
| AGAATAGAAACTTGCCTCAG+TGG | - | chr5.4:39595146-39595165 | MS.gene75410:intron | 40.0% | |
| AGATACAAGGACCAGCTAAT+TGG | - | chr5.4:39593125-39593144 | MS.gene75410:CDS | 40.0% | |
| ATCCTCAATACCAACCTTCT+TGG | - | chr5.4:39593036-39593055 | MS.gene75410:CDS | 40.0% | |
| ATGATTCCTCCATTGTACTG+AGG | + | chr5.4:39591367-39591386 | None:intergenic | 40.0% | |
| ATTGATCCAACGATTGGGTA+AGG | - | chr5.4:39592636-39592655 | MS.gene75410:CDS | 40.0% | |
| ATTTGTGTAGGCAGTGTACT+TGG | - | chr5.4:39593703-39593722 | MS.gene75410:CDS | 40.0% | |
| CACATCCTAAAACAACCTTG+TGG | + | chr5.4:39593797-39593816 | None:intergenic | 40.0% | |
| CATTGGATTGATCCAACGAT+TGG | - | chr5.4:39592630-39592649 | MS.gene75410:CDS | 40.0% | |
| CTACGGTATGCAAAGAAACA+CGG | - | chr5.4:39592978-39592997 | MS.gene75410:CDS | 40.0% | |
| CTGCCTACACAAATCATTAG+TGG | + | chr5.4:39593697-39593716 | None:intergenic | 40.0% | |
| CTGGACCATAAAACCATAGA+TGG | - | chr5.4:39591665-39591684 | MS.gene75410:intron | 40.0% | |
| CTTGGAGCAAGTTCTTAAAG+AGG | - | chr5.4:39593721-39593740 | MS.gene75410:CDS | 40.0% | |
| GAATGAATATGCACAAGGCA+AGG | - | chr5.4:39592929-39592948 | MS.gene75410:intron | 40.0% | |
| GAGGAACAATGCAGAACTTA+TGG | + | chr5.4:39591586-39591605 | None:intergenic | 40.0% | |
| GCAATGGTCAAAACAACTGA+AGG | - | chr5.4:39592201-39592220 | MS.gene75410:intron | 40.0% | |
| GCTCAGGATGTATTTGTTCA+TGG | + | chr5.4:39592835-39592854 | None:intergenic | 40.0% | |
| GTACTACTACGTTCTTCTTG+CGG | + | chr5.4:39592728-39592747 | None:intergenic | 40.0% | |
| TACAAGGATGGACAGCATTT+GGG | - | chr5.4:39591413-39591432 | MS.gene75410:intron | 40.0% | |
| TCCTCAATACCAACCTTCTT+GGG | - | chr5.4:39593037-39593056 | MS.gene75410:CDS | 40.0% | |
| TGGAATAAGCAATTGCCTCT+TGG | - | chr5.4:39593353-39593372 | MS.gene75410:CDS | 40.0% | |
| TGGGTTAAAATTGTGCAGCT+TGG | - | chr5.4:39592145-39592164 | MS.gene75410:intron | 40.0% | |
| TGTAGTCCATCATTCAGTTC+TGG | + | chr5.4:39591397-39591416 | None:intergenic | 40.0% | |
| TTCTGTGAGACACTATCATG+TGG | + | chr5.4:39591505-39591524 | None:intergenic | 40.0% | |
| TTCTTTGCTGGTAAGACTCT+AGG | - | chr5.4:39595636-39595655 | MS.gene75410:intron | 40.0% | |
| TTGGTTTCATCCACAGTGTT+TGG | - | chr5.4:39591327-39591346 | MS.gene75410:intron | 40.0% | |
| TTGTTCATGGCACTTCCAAA+TGG | + | chr5.4:39592822-39592841 | None:intergenic | 40.0% | |
| TTTGTAGTCGCCGTGAAAAA+GGG | + | chr5.4:39593939-39593958 | None:intergenic | 40.0% | |
| ! | TTTTACCACCTTTGAGTGCA+AGG | + | chr5.4:39595376-39595395 | None:intergenic | 40.0% |
| ! | TTTTCACGGCGACTACAAAA+TGG | - | chr5.4:39593940-39593959 | MS.gene75410:CDS | 40.0% |
| ! | TTTTGTAGTCGCCGTGAAAA+AGG | + | chr5.4:39593940-39593959 | None:intergenic | 40.0% |
| !! | AGGCCACAATATATTTTGGG+AGG | - | chr5.4:39593013-39593032 | MS.gene75410:CDS | 40.0% |
| !! | CGTGACCATCTATGGTTTTA+TGG | + | chr5.4:39591673-39591692 | None:intergenic | 40.0% |
| !! | CTACTTTTGGGGAGTTTGAT+TGG | + | chr5.4:39595289-39595308 | None:intergenic | 40.0% |
| !! | CTTAATGCCTCCCTTTTTCA+CGG | - | chr5.4:39593926-39593945 | MS.gene75410:CDS | 40.0% |
| !! | GAACTGAATGATGGACTACA+AGG | - | chr5.4:39591397-39591416 | MS.gene75410:intron | 40.0% |
| !! | GCGCTTAAGTTTTGTGCATT+TGG | - | chr5.4:39591874-39591893 | MS.gene75410:intron | 40.0% |
| !! | TGAATGATGGACTACAAGGA+TGG | - | chr5.4:39591401-39591420 | MS.gene75410:intron | 40.0% |
| AAACACGGTATTGCTGTCAG+AGG | - | chr5.4:39592993-39593012 | MS.gene75410:CDS | 45.0% | |
| AAACACGTGTGGTTGAATCG+CGG | + | chr5.4:39595676-39595695 | None:intergenic | 45.0% | |
| ACAAGGACCAGCTAATTGGT+TGG | - | chr5.4:39593129-39593148 | MS.gene75410:CDS | 45.0% | |
| ACAATTCGGCTCAGCGTAAA+TGG | + | chr5.4:39592244-39592263 | None:intergenic | 45.0% | |
| ACGATACCTTACCCAATCGT+TGG | + | chr5.4:39592645-39592664 | None:intergenic | 45.0% | |
| AGCTTGGATACAAGTGAGTG+AGG | - | chr5.4:39592161-39592180 | MS.gene75410:intron | 45.0% | |
| AGTAAATCTAGCTAGGTGCG+AGG | + | chr5.4:39591605-39591624 | None:intergenic | 45.0% | |
| CAACATCCCAACCAATTAGC+TGG | + | chr5.4:39593139-39593158 | None:intergenic | 45.0% | |
| CAAGGACCAGCTAATTGGTT+GGG | - | chr5.4:39593130-39593149 | MS.gene75410:CDS | 45.0% | |
| CAGCTCTCTCCTATATCTCT+CGG | - | chr5.4:39595477-39595496 | MS.gene75410:intron | 45.0% | |
| CATTGTACTGAGGCCTTTGT+GGG | + | chr5.4:39591357-39591376 | None:intergenic | 45.0% | |
| CCAATTGCTGAGTTCCTAAC+AGG | + | chr5.4:39595263-39595282 | None:intergenic | 45.0% | |
| CCTGTTAGGAACTCAGCAAT+TGG | - | chr5.4:39595260-39595279 | MS.gene75410:intron | 45.0% | |
| CGAATCTCCACTAATCACCA+AGG | - | chr5.4:39590813-39590832 | MS.gene75410:CDS | 45.0% | |
| CTACAAGGATGGACAGCATT+TGG | - | chr5.4:39591412-39591431 | MS.gene75410:intron | 45.0% | |
| CTATGTGTCATCCTACTTGC+AGG | - | chr5.4:39590780-39590799 | MS.gene75410:CDS | 45.0% | |
| CTGTCCACATTACAATGCCT+CGG | + | chr5.4:39593766-39593785 | None:intergenic | 45.0% | |
| GACTCAAGTCCAATTCCAAG+AGG | + | chr5.4:39593371-39593390 | None:intergenic | 45.0% | |
| GAGAGAGCTTACTTCAATGC+TGG | + | chr5.4:39591248-39591267 | None:intergenic | 45.0% | |
| GATAACCTTGCACTCAAAGG+TGG | - | chr5.4:39595368-39595387 | MS.gene75410:intron | 45.0% | |
| GATCCATATTGGCAAACCAG+TGG | + | chr5.4:39593456-39593475 | None:intergenic | 45.0% | |
| GATCTGGATCAGTTCTTTGC+TGG | - | chr5.4:39595624-39595643 | MS.gene75410:intron | 45.0% | |
| GCATTGTAATGTGGACAGCA+TGG | - | chr5.4:39593768-39593787 | MS.gene75410:intron | 45.0% | |
| GCTCTCATGTAAGGCAAGTT+GGG | + | chr5.4:39593413-39593432 | None:intergenic | 45.0% | |
| GGTTCAACTGGACCTATTGA+AGG | + | chr5.4:39592580-39592599 | None:intergenic | 45.0% | |
| GTAGGATGACACATAGCAGA+AGG | + | chr5.4:39590776-39590795 | None:intergenic | 45.0% | |
| GTGGTTACAAACCTGCAAGT+AGG | + | chr5.4:39590794-39590813 | None:intergenic | 45.0% | |
| GTTTGAAGAAGAGTCCACTG+AGG | + | chr5.4:39595163-39595182 | None:intergenic | 45.0% | |
| TCGAAAACGCCGAGAGATAT+AGG | + | chr5.4:39595489-39595508 | None:intergenic | 45.0% | |
| TGCATACCGTAGCATCACAT+CGG | + | chr5.4:39592970-39592989 | None:intergenic | 45.0% | |
| TGCTTCAGCTTCAAAACCTG+TGG | + | chr5.4:39591206-39591225 | None:intergenic | 45.0% | |
| TGGTGATTAGTGGAGATTCG+TGG | + | chr5.4:39590813-39590832 | None:intergenic | 45.0% | |
| TTGAAGCCGATGTGATGCTA+CGG | - | chr5.4:39592961-39592980 | MS.gene75410:CDS | 45.0% | |
| TTGAATCGCGGAAAACACGT+CGG | + | chr5.4:39595664-39595683 | None:intergenic | 45.0% | |
| TTTACGCTGAGCCGAATTGT+TGG | - | chr5.4:39592244-39592263 | MS.gene75410:intron | 45.0% | |
| ! | AGCAGCTGAGCTCTATTTTG+AGG | - | chr5.4:39592305-39592324 | MS.gene75410:intron | 45.0% |
| ! | GTTTTCGACACCGATGGTTT+TGG | - | chr5.4:39595501-39595520 | MS.gene75410:intron | 45.0% |
| ! | TGTTGGTCTATGCTTAAGGG+TGG | - | chr5.4:39592261-39592280 | MS.gene75410:intron | 45.0% |
| ! | TTGGTTCGCATCTAGGTTCA+CGG | - | chr5.4:39592872-39592891 | MS.gene75410:intron | 45.0% |
| ! | TTTTGACCATTGCTGTCACC+GGG | + | chr5.4:39592194-39592213 | None:intergenic | 45.0% |
| !! | ACCCAAGAAGGTTGGTATTG+AGG | + | chr5.4:39593041-39593060 | None:intergenic | 45.0% |
| !! | CGTGAAAAAGGGAGGCATTA+AGG | + | chr5.4:39593928-39593947 | None:intergenic | 45.0% |
| !! | GTTTTGACCATTGCTGTCAC+CGG | + | chr5.4:39592195-39592214 | None:intergenic | 45.0% |
| !! | TCGACTTTACCTGATTTGGC+TGG | + | chr5.4:39593499-39593518 | None:intergenic | 45.0% |
| AAATGTCCCGGTGACAGCAA+TGG | - | chr5.4:39592185-39592204 | MS.gene75410:intron | 50.0% | |
| ACCGTGCGTAGAAGCTACAT+CGG | + | chr5.4:39595427-39595446 | None:intergenic | 50.0% | |
| ACGAAACGCAAGAACGACTG+TGG | + | chr5.4:39594831-39594850 | None:intergenic | 50.0% | |
| AGTGAGTGAGGCAAATGTCC+CGG | - | chr5.4:39592173-39592192 | MS.gene75410:intron | 50.0% | |
| AGTGTTTGGCACACCCACAA+AGG | - | chr5.4:39591341-39591360 | MS.gene75410:intron | 50.0% | |
| ATTACAATGCCTCGGATCCC+TGG | + | chr5.4:39593758-39593777 | None:intergenic | 50.0% | |
| CAAAGGCCTCAGTACAATGG+AGG | - | chr5.4:39591358-39591377 | MS.gene75410:intron | 50.0% | |
| CAAATCGCGGAAAACACGTG+TGG | + | chr5.4:39595687-39595706 | None:intergenic | 50.0% | |
| CCACAAAGGCCTCAGTACAA+TGG | - | chr5.4:39591355-39591374 | MS.gene75410:intron | 50.0% | |
| CCATTGTACTGAGGCCTTTG+TGG | + | chr5.4:39591358-39591377 | None:intergenic | 50.0% | |
| CGAGAGATATAGGAGAGAGC+TGG | + | chr5.4:39595479-39595498 | None:intergenic | 50.0% | |
| CGCAGTGCTCCATCAATATC+TGG | + | chr5.4:39594909-39594928 | None:intergenic | 50.0% | |
| GAGTGTGAGAGGAGTAGATC+TGG | - | chr5.4:39591646-39591665 | MS.gene75410:intron | 50.0% | |
| GATATAGGAGAGAGCTGGTG+CGG | + | chr5.4:39595474-39595493 | None:intergenic | 50.0% | |
| GCTCGTCAGTGACAGATCTT+GGG | - | chr5.4:39595577-39595596 | MS.gene75410:intron | 50.0% | |
| GGCTCTCATGTAAGGCAAGT+TGG | + | chr5.4:39593414-39593433 | None:intergenic | 50.0% | |
| TCCGATGTAGCTTCTACGCA+CGG | - | chr5.4:39595423-39595442 | MS.gene75410:intron | 50.0% | |
| TCTGTCACTGACGAGCAGAT+CGG | + | chr5.4:39595573-39595592 | None:intergenic | 50.0% | |
| TGCTCGTCAGTGACAGATCT+TGG | - | chr5.4:39595576-39595595 | MS.gene75410:intron | 50.0% | |
| TGTTGCAAGCCAGCCAAATC+AGG | - | chr5.4:39593487-39593506 | MS.gene75410:CDS | 50.0% | |
| TTACAATGCCTCGGATCCCT+GGG | + | chr5.4:39593757-39593776 | None:intergenic | 50.0% | |
| TTGTCGACAACATCGCCTGT+AGG | + | chr5.4:39593848-39593867 | None:intergenic | 50.0% | |
| TTTGACGATGCCGATACGAG+AGG | + | chr5.4:39591756-39591775 | None:intergenic | 50.0% | |
| ! | CTCATGTAAGGCAAGTTGGG+AGG | + | chr5.4:39593410-39593429 | None:intergenic | 50.0% |
| !! | CTGCCACTGGTTTGCCAATA+TGG | - | chr5.4:39593450-39593469 | MS.gene75410:CDS | 50.0% |
| !! | GGATCCGAGGCATTGTAATG+TGG | - | chr5.4:39593759-39593778 | MS.gene75410:intron | 50.0% |
| !! | GGTCGCCACAAGGTTGTTTT+AGG | - | chr5.4:39593789-39593808 | MS.gene75410:intron | 50.0% |
| !! | TGAGTGGTGTCACCAAGCAA+AGG | - | chr5.4:39590942-39590961 | MS.gene75410:CDS | 50.0% |
| !!! | TTCGACACCGATGGTTTTGG+TGG | - | chr5.4:39595504-39595523 | MS.gene75410:intron | 50.0% |
| CGTCAGTGACAGATCTTGGG+CGG | - | chr5.4:39595580-39595599 | MS.gene75410:intron | 55.0% | |
| GATGTAGCTTCTACGCACGG+TGG | - | chr5.4:39595426-39595445 | MS.gene75410:intron | 55.0% | |
| GCTTAAGGGTGGTCTCACAG+CGG | - | chr5.4:39592272-39592291 | MS.gene75410:intron | 55.0% | |
| GTAGTCGCCGTGAAAAAGGG+AGG | + | chr5.4:39593936-39593955 | None:intergenic | 55.0% | |
| TCGAGGGAGGCTCTCATGTA+AGG | + | chr5.4:39593422-39593441 | None:intergenic | 55.0% | |
| TGGCAAACCAGTGGCAGCAA+GGG | + | chr5.4:39593447-39593466 | None:intergenic | 55.0% | |
| TGTGGGTGTGCCAAACACTG+TGG | + | chr5.4:39591340-39591359 | None:intergenic | 55.0% | |
| TTGGCAAACCAGTGGCAGCA+AGG | + | chr5.4:39593448-39593467 | None:intergenic | 55.0% | |
| ! | AAAGAGGCACACTCTCACCC+AGG | - | chr5.4:39593737-39593756 | MS.gene75410:intron | 55.0% |
| ! | AAGAGGCACACTCTCACCCA+GGG | - | chr5.4:39593738-39593757 | MS.gene75410:intron | 55.0% |
| ! | AGTTGGTCTGCTGAGAGCGA+AGG | + | chr5.4:39593065-39593084 | None:intergenic | 55.0% |
| ! | GCTTGGTGACACCACTCATG+AGG | + | chr5.4:39590940-39590959 | None:intergenic | 55.0% |
| !! | GAGAGCGAAGGTACCCAAGA+AGG | + | chr5.4:39593053-39593072 | None:intergenic | 55.0% |
| !! | GCGAAGGTACCCAAGAAGGT+TGG | + | chr5.4:39593049-39593068 | None:intergenic | 55.0% |
| ATAGGAGAGAGCTGGTGCGG+AGG | + | chr5.4:39595471-39595490 | None:intergenic | 60.0% | |
| CTGCCGCCACCATGAACGAT+GGG | + | chr5.4:39595534-39595553 | None:intergenic | 60.0% | |
| GGGGGCTCCACCAAAACCAT+CGG | + | chr5.4:39595514-39595533 | None:intergenic | 60.0% | |
| TAGGAGAGAGCTGGTGCGGA+GGG | + | chr5.4:39595470-39595489 | None:intergenic | 60.0% | |
| TGCCGCCACCATGAACGATG+GGG | + | chr5.4:39595533-39595552 | None:intergenic | 60.0% | |
| TGGACAGCATGGTCGCCACA+AGG | - | chr5.4:39593779-39593798 | MS.gene75410:intron | 60.0% | |
| ! | CTCGGCGTTTTCGACACCGA+TGG | - | chr5.4:39595495-39595514 | MS.gene75410:intron | 60.0% |
| !! | AGTGGCAGCAAGGGTGTCGA+GGG | + | chr5.4:39593438-39593457 | None:intergenic | 60.0% |
| CACGGTGGTGCGATGAGCTG+CGG | - | chr5.4:39595441-39595460 | MS.gene75410:intron | 65.0% | |
| CACTCTCACCCAGGGATCCG+AGG | - | chr5.4:39593746-39593765 | MS.gene75410:intron | 65.0% | |
| CTCGACACCCTTGCTGCCAC+TGG | - | chr5.4:39593437-39593456 | MS.gene75410:CDS | 65.0% | |
| GCCCCCATCGTTCATGGTGG+CGG | - | chr5.4:39595528-39595547 | MS.gene75410:intron | 65.0% | |
| GCCGCCACCATGAACGATGG+GGG | + | chr5.4:39595532-39595551 | None:intergenic | 65.0% | |
| GCTGCCGCCACCATGAACGA+TGG | + | chr5.4:39595535-39595554 | None:intergenic | 65.0% | |
| GGAGCCCCCATCGTTCATGG+TGG | - | chr5.4:39595525-39595544 | MS.gene75410:intron | 65.0% | |
| GGTCTCACAGCGGACGCAAC+AGG | - | chr5.4:39592282-39592301 | MS.gene75410:intron | 65.0% | |
| GGTGGAGCCCCCATCGTTCA+TGG | - | chr5.4:39595522-39595541 | MS.gene75410:intron | 65.0% | |
| !! | CAGTGGCAGCAAGGGTGTCG+AGG | + | chr5.4:39593439-39593458 | None:intergenic | 65.0% |
| !! | TCGTTCATGGTGGCGGCAGC+TGG | - | chr5.4:39595535-39595554 | MS.gene75410:intron | 65.0% |
| !! | GGCAGCAAGGGTGTCGAGGG+AGG | + | chr5.4:39593435-39593454 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 39590762 | 39595707 | 39590762 | ID=MS.gene75410 |
| chr5.4 | mRNA | 39590762 | 39595707 | 39590762 | ID=MS.gene75410.t1;Parent=MS.gene75410 |
| chr5.4 | exon | 39595668 | 39595707 | 39595668 | ID=MS.gene75410.t1.exon1;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39595668 | 39595707 | 39595668 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39595214 | 39595260 | 39595214 | ID=MS.gene75410.t1.exon2;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39595214 | 39595260 | 39595214 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39594907 | 39595126 | 39594907 | ID=MS.gene75410.t1.exon3;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39594907 | 39595126 | 39594907 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39594143 | 39594306 | 39594143 | ID=MS.gene75410.t1.exon4;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39594143 | 39594306 | 39594143 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39593918 | 39594016 | 39593918 | ID=MS.gene75410.t1.exon5;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39593918 | 39594016 | 39593918 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39592961 | 39593746 | 39592961 | ID=MS.gene75410.t1.exon6;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39592961 | 39593746 | 39592961 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39592440 | 39592756 | 39592440 | ID=MS.gene75410.t1.exon7;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39592440 | 39592756 | 39592440 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39592032 | 39592066 | 39592032 | ID=MS.gene75410.t1.exon8;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39592032 | 39592066 | 39592032 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| chr5.4 | exon | 39590762 | 39591036 | 39590762 | ID=MS.gene75410.t1.exon9;Parent=MS.gene75410.t1 |
| chr5.4 | CDS | 39590762 | 39591036 | 39590762 | ID=cds.MS.gene75410.t1;Parent=MS.gene75410.t1 |
| Gene Sequence |
| Protein sequence |
