Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016914.t1 | XP_003617173.1 | 96 | 223 | 8 | 1 | 1 | 222 | 1 | 223 | 1.90E-80 | 308.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016914.t1 | Q84WM9 | 72.4 | 228 | 57 | 1 | 1 | 222 | 1 | 228 | 7.1e-60 | 231.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016914.t1 | B7FMR1 | 96.0 | 223 | 8 | 1 | 1 | 222 | 1 | 223 | 1.4e-80 | 308.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016914 | MS.gene037669 | PPI |
| MS.gene016914 | MS.gene048096 | PPI |
| MS.gene036405 | MS.gene016914 | PPI |
| MS.gene37588 | MS.gene016914 | PPI |
| MS.gene016914 | MS.gene057052 | PPI |
| MS.gene016914 | MS.gene92572 | PPI |
| MS.gene016914 | MS.gene39764 | PPI |
| MS.gene016914 | MS.gene68663 | PPI |
| MS.gene016914 | MS.gene81545 | PPI |
| MS.gene016914 | MS.gene73243 | PPI |
| MS.gene043773 | MS.gene016914 | PPI |
| MS.gene016914 | MS.gene37588 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016914.t1 | MTR_5g088660 | 97.309 | 223 | 5 | 1 | 1 | 222 | 1 | 223 | 5.38e-155 | 429 |
| MS.gene016914.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 1.70e-75 | 228 |
| MS.gene016914.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 3.06e-75 | 228 |
| MS.gene016914.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 1.81e-73 | 223 |
| MS.gene016914.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 2.40e-73 | 223 |
| MS.gene016914.t1 | MTR_2g461200 | 55.556 | 180 | 71 | 4 | 1 | 171 | 1 | 180 | 1.81e-36 | 126 |
| MS.gene016914.t1 | MTR_5g088685 | 90.698 | 43 | 4 | 0 | 129 | 171 | 7 | 49 | 7.23e-21 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016914.t1 | AT5G12110 | 70.175 | 228 | 62 | 3 | 1 | 222 | 1 | 228 | 8.17e-101 | 292 |
| MS.gene016914.t1 | AT5G19510 | 74.107 | 224 | 56 | 2 | 1 | 222 | 1 | 224 | 3.61e-90 | 265 |
| MS.gene016914.t1 | AT2G18110 | 57.642 | 229 | 85 | 4 | 5 | 222 | 4 | 231 | 2.06e-71 | 217 |
| MS.gene016914.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 1.17e-68 | 210 |
| MS.gene016914.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 2.49e-68 | 211 |
Find 49 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGACATACTCGTTAAT+TGG | 0.274565 | 5.2:-75215165 | None:intergenic |
| CAAAGTGTATGGATATGTTT+TGG | 0.310672 | 5.2:+75212952 | MS.gene016914:CDS |
| TTAGCAGGTGCTCCTGCAGC+TGG | 0.312184 | 5.2:-75213221 | None:intergenic |
| TTACTCTCTTTCTTCTTTGC+GGG | 0.314961 | 5.2:-75214678 | None:intergenic |
| GATGATGATCTTGACCTCTT+TGG | 0.382817 | 5.2:+75214600 | MS.gene016914:CDS |
| ACATGCTCCCCAGGTTAAAC+CGG | 0.384492 | 5.2:-75214918 | None:intergenic |
| TCCCTCAATGATTTCCTCTC+TGG | 0.387083 | 5.2:+75212550 | MS.gene016914:CDS |
| TTGAAATTCCCGGTTTAACC+TGG | 0.398982 | 5.2:+75214909 | MS.gene016914:CDS |
| CTTACTCTCTTTCTTCTTTG+CGG | 0.404225 | 5.2:-75214679 | None:intergenic |
| GTTCGCAGCGTTGAAATTCC+CGG | 0.412225 | 5.2:+75214899 | MS.gene016914:CDS |
| AAGGATGATATCAAAGTGTA+TGG | 0.446962 | 5.2:+75212941 | MS.gene016914:CDS |
| TAAGAAGGCAGCAGAGGAAA+GGG | 0.453012 | 5.2:+75214641 | MS.gene016914:CDS |
| AGATACAAGATCGTCAATAA+TGG | 0.472820 | 5.2:-75215106 | None:intergenic |
| AGTGGAAGTGCTCCAGCTGC+AGG | 0.481359 | 5.2:+75213209 | MS.gene016914:CDS |
| TGCATTTGTTACAGCCAAGC+TGG | 0.491896 | 5.2:+75215041 | MS.gene016914:intron |
| AAGCTGGTTGCTGTTGGATA+CGG | 0.492710 | 5.2:+75215057 | MS.gene016914:CDS |
| TCCAGAGAGGAAATCATTGA+GGG | 0.494384 | 5.2:-75212551 | None:intergenic |
| TGAGACAGACATGAAGAAGC+TGG | 0.511507 | 5.2:+75214868 | MS.gene016914:CDS |
| TGAAACAGAGGAGGATAAGA+AGG | 0.514826 | 5.2:+75214626 | MS.gene016914:CDS |
| ATAAGAAGGCAGCAGAGGAA+AGG | 0.514986 | 5.2:+75214640 | MS.gene016914:CDS |
| TCATCATCATCTTCAGCAGC+AGG | 0.517729 | 5.2:-75214585 | None:intergenic |
| ATGCGACAATGTCACAGCTC+TGG | 0.527719 | 5.2:-75215182 | None:intergenic |
| ATGTCTGTCTCATCATCCCA+TGG | 0.532053 | 5.2:-75214857 | None:intergenic |
| TTCTGCTTGATGTTAAGCCA+TGG | 0.537433 | 5.2:+75214840 | MS.gene016914:CDS |
| TCTCTTCACATCTTGCTGCA+AGG | 0.539260 | 5.2:+75213023 | MS.gene016914:CDS |
| TGAAATTCCCGGTTTAACCT+GGG | 0.541002 | 5.2:+75214910 | MS.gene016914:CDS |
| TGGCTTAACATCAAGCAGAA+TGG | 0.546092 | 5.2:-75214837 | None:intergenic |
| AGACATGAAGAAGCTGGAAG+AGG | 0.547223 | 5.2:+75214874 | MS.gene016914:CDS |
| TTCCAGAGAGGAAATCATTG+AGG | 0.548339 | 5.2:-75212552 | None:intergenic |
| GAGATACATACAGCTTTAGC+AGG | 0.553332 | 5.2:-75213236 | None:intergenic |
| CTGTGAGTCTTTCTTCAATG+AGG | 0.560347 | 5.2:-75215137 | None:intergenic |
| ATCGTACCAACCAGCAACAT+TGG | 0.561284 | 5.2:-75212996 | None:intergenic |
| CTCAGATCTTCACACAGAAG+AGG | 0.570425 | 5.2:+75212519 | MS.gene016914:CDS |
| ACATTGGCAAAAGCATCACT+TGG | 0.572710 | 5.2:-75212980 | None:intergenic |
| GGAGGATAAGAAGGCAGCAG+AGG | 0.581848 | 5.2:+75214635 | MS.gene016914:CDS |
| TCAGATCTTCACACAGAAGA+GGG | 0.583876 | 5.2:+75212520 | MS.gene016914:CDS |
| GCTCAAGGTGTGAAATTCAG+TGG | 0.585505 | 5.2:+75213191 | MS.gene016914:CDS |
| AGTTTCCCTGGAAAAGCTCA+AGG | 0.588553 | 5.2:+75213176 | MS.gene016914:intron |
| TCTGCTTGATGTTAAGCCAT+GGG | 0.593895 | 5.2:+75214841 | MS.gene016914:CDS |
| CATGCTCCCCAGGTTAAACC+GGG | 0.597168 | 5.2:-75214917 | None:intergenic |
| ACAGCCAAGCTGGTTGCTGT+TGG | 0.600555 | 5.2:+75215051 | MS.gene016914:intron |
| TTCTGTGTGAAGATCTGAGA+AGG | 0.604138 | 5.2:-75212515 | None:intergenic |
| GAAATTCCCGGTTTAACCTG+GGG | 0.605534 | 5.2:+75214911 | MS.gene016914:CDS |
| CCTCTGTTTCATCACCAAAG+AGG | 0.617705 | 5.2:-75214614 | None:intergenic |
| GAAGGCAGCAGAGGAAAGGG+AGG | 0.617890 | 5.2:+75214644 | MS.gene016914:CDS |
| GTATCCAACAGCAACCAGCT+TGG | 0.624167 | 5.2:-75215055 | None:intergenic |
| ATTCAGGGATCAATTGACAA+AGG | 0.634362 | 5.2:+75212922 | MS.gene016914:intron |
| CCTCTTTGGTGATGAAACAG+AGG | 0.645851 | 5.2:+75214614 | MS.gene016914:CDS |
| CTTTGGTGATGAAACAGAGG+AGG | 0.675786 | 5.2:+75214617 | MS.gene016914:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTATAAA+AGG | - | chr5.2:75214993-75215012 | None:intergenic | 0.0% |
| !! | AATATAAAGATCAATAATTA+AGG | - | chr5.2:75213075-75213094 | None:intergenic | 10.0% |
| !! | AATTTCAATAATAAAATTGT+TGG | - | chr5.2:75214066-75214085 | None:intergenic | 10.0% |
| !! | TTTATATTGAAATATGAATT+TGG | + | chr5.2:75213087-75213106 | MS.gene016914:intron | 10.0% |
| !!! | TCTATTTTATTGTTTTGAAT+GGG | + | chr5.2:75212855-75212874 | MS.gene016914:intron | 15.0% |
| !!! | TTCTATTTTATTGTTTTGAA+TGG | + | chr5.2:75212854-75212873 | MS.gene016914:intron | 15.0% |
| !! | AAAAATTTATAACGACTAGA+AGG | - | chr5.2:75214709-75214728 | None:intergenic | 20.0% |
| !! | AAAATTACAAAATGTCTTCT+AGG | - | chr5.2:75213901-75213920 | None:intergenic | 20.0% |
| !! | AACACGAAAAATTAAAATTG+AGG | - | chr5.2:75213262-75213281 | None:intergenic | 20.0% |
| !! | AATCATTGCATGTTTATTAT+AGG | + | chr5.2:75214186-75214205 | MS.gene016914:intron | 20.0% |
| !! | ACACGAAAAATTAAAATTGA+GGG | - | chr5.2:75213261-75213280 | None:intergenic | 20.0% |
| !! | ATTCGAATCAATAAAATAGA+AGG | - | chr5.2:75212710-75212729 | None:intergenic | 20.0% |
| !! | CTGGAAAAAAATATATTTCT+GGG | + | chr5.2:75212569-75212588 | MS.gene016914:CDS | 20.0% |
| !! | GTTATTGTCAATTGTAAATA+TGG | + | chr5.2:75213736-75213755 | MS.gene016914:intron | 20.0% |
| !! | TAAAAAAAGTAGAAATTGAG+AGG | - | chr5.2:75212607-75212626 | None:intergenic | 20.0% |
| !! | TCTGGAAAAAAATATATTTC+TGG | + | chr5.2:75212568-75212587 | MS.gene016914:CDS | 20.0% |
| !!! | AAATATATTTTTTTCCAGAG+AGG | - | chr5.2:75212567-75212586 | None:intergenic | 20.0% |
| !!! | CTATTTTATTGTTTTGAATG+GGG | + | chr5.2:75212856-75212875 | MS.gene016914:intron | 20.0% |
| !!! | GAAATAAAAATAGAGTACTT+TGG | - | chr5.2:75214013-75214032 | None:intergenic | 20.0% |
| !!! | GAGTCTTTGATTTTATTTAT+TGG | + | chr5.2:75213856-75213875 | MS.gene016914:intron | 20.0% |
| !!! | TCATTAAGTGATATTTTTAC+AGG | + | chr5.2:75214803-75214822 | MS.gene016914:intron | 20.0% |
| !!! | TTTTATTGTTTCTGAGATTT+GGG | + | chr5.2:75212652-75212671 | MS.gene016914:intron | 20.0% |
| !!! | TTTTTACTGTTTTGAGATTT+GGG | + | chr5.2:75212747-75212766 | MS.gene016914:intron | 20.0% |
| !!! | TTTTTATTGTTTCTGAGATT+TGG | + | chr5.2:75212651-75212670 | MS.gene016914:intron | 20.0% |
| !!! | TTTTTTACTGTTTTGAGATT+TGG | + | chr5.2:75212746-75212765 | MS.gene016914:intron | 20.0% |
| ! | ATAAATAATCCACACGAAAA+AGG | + | chr5.2:75213942-75213961 | MS.gene016914:intron | 25.0% |
| ! | ATCATTGGAATTTATTTGTC+AGG | + | chr5.2:75214557-75214576 | MS.gene016914:intron | 25.0% |
| ! | CATGTTTATTATAGGCAATT+AGG | + | chr5.2:75214194-75214213 | MS.gene016914:intron | 25.0% |
| ! | CTACTAACTAATTTGATCAT+TGG | + | chr5.2:75214542-75214561 | MS.gene016914:intron | 25.0% |
| !! | ATTTGGGTTATTGAAATTCA+GGG | + | chr5.2:75212907-75212926 | MS.gene016914:intron | 25.0% |
| !! | CATCCAACATAATTTGAAAT+CGG | + | chr5.2:75213437-75213456 | MS.gene016914:intron | 25.0% |
| !! | CTTTCTGAAAATAAATGACT+AGG | - | chr5.2:75213571-75213590 | None:intergenic | 25.0% |
| !! | TTGATTCGAATTGAAAAGAT+TGG | + | chr5.2:75212719-75212738 | MS.gene016914:intron | 25.0% |
| !! | TTTTGACATGACATACTATA+AGG | + | chr5.2:75214308-75214327 | MS.gene016914:intron | 25.0% |
| !!! | CATTTTTCAGTAATATACTG+TGG | + | chr5.2:75213367-75213386 | MS.gene016914:intron | 25.0% |
| !!! | GGTTTTTCAAATTCTATGTT+GGG | + | chr5.2:75212673-75212692 | MS.gene016914:intron | 25.0% |
| !!! | GGTTTTTTAGAGTAGTATTA+GGG | + | chr5.2:75214113-75214132 | MS.gene016914:intron | 25.0% |
| !!! | TGGTTTTTTAGAGTAGTATT+AGG | + | chr5.2:75214112-75214131 | MS.gene016914:intron | 25.0% |
| !!! | TTAAGTGATATTTTTACAGG+TGG | + | chr5.2:75214806-75214825 | MS.gene016914:intron | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | + | chr5.2:75212797-75212816 | MS.gene016914:intron | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | + | chr5.2:75212796-75212815 | MS.gene016914:intron | 25.0% |
| AAGGATGATATCAAAGTGTA+TGG | + | chr5.2:75212941-75212960 | MS.gene016914:CDS | 30.0% | |
| ACTTAAGATGAAAAGCTTAC+AGG | - | chr5.2:75213522-75213541 | None:intergenic | 30.0% | |
| AGAATACAAAACACTAGAGT+TGG | - | chr5.2:75213820-75213839 | None:intergenic | 30.0% | |
| AGATACAAGATCGTCAATAA+TGG | - | chr5.2:75215109-75215128 | None:intergenic | 30.0% | |
| GAAAAGCTTACAGGTTTAAA+GGG | - | chr5.2:75213513-75213532 | None:intergenic | 30.0% | |
| GTATTTCTTAGAGTAACACT+GGG | + | chr5.2:75213342-75213361 | MS.gene016914:intron | 30.0% | |
| TGAAAAGCTTACAGGTTTAA+AGG | - | chr5.2:75213514-75213533 | None:intergenic | 30.0% | |
| TGTATTTCTTAGAGTAACAC+TGG | + | chr5.2:75213341-75213360 | MS.gene016914:intron | 30.0% | |
| ! | AGTAGAAATTGAGAGGATTT+TGG | - | chr5.2:75212600-75212619 | None:intergenic | 30.0% |
| ! | CAAAGTGTATGGATATGTTT+TGG | + | chr5.2:75212952-75212971 | MS.gene016914:CDS | 30.0% |
| ! | GATTTGGGTTATTGAAATTC+AGG | + | chr5.2:75212906-75212925 | MS.gene016914:intron | 30.0% |
| ! | GTAGAAATTGAGAGGATTTT+GGG | - | chr5.2:75212599-75212618 | None:intergenic | 30.0% |
| ! | TAGAAATTGAGAGGATTTTG+GGG | - | chr5.2:75212598-75212617 | None:intergenic | 30.0% |
| !! | ATGCCGATTTCAAATTATGT+TGG | - | chr5.2:75213443-75213462 | None:intergenic | 30.0% |
| !! | GGGTTTTTCAAATTCTATGT+TGG | + | chr5.2:75212672-75212691 | MS.gene016914:intron | 30.0% |
| !! | TTGTTTTTCACTTTTGAGCA+TGG | - | chr5.2:75213785-75213804 | None:intergenic | 30.0% |
| !!! | AAGCATAGTTTTGAGAAAAG+TGG | + | chr5.2:75214760-75214779 | MS.gene016914:intron | 30.0% |
| !!! | TTTTGTATGATTAGTTTCCC+TGG | + | chr5.2:75213164-75213183 | MS.gene016914:intron | 30.0% |
| ACCTAAACTTCACAACAACT+TGG | - | chr5.2:75214485-75214504 | None:intergenic | 35.0% | |
| ACTTGGTAAACATCTCTATC+AGG | - | chr5.2:75214365-75214384 | None:intergenic | 35.0% | |
| AGAAAAGTGGTCATTGAGTT+TGG | + | chr5.2:75214773-75214792 | MS.gene016914:intron | 35.0% | |
| AGTTGTATTGAAGTCACTGA+AGG | + | chr5.2:75214517-75214536 | MS.gene016914:intron | 35.0% | |
| ATTCAGGGATCAATTGACAA+AGG | + | chr5.2:75212922-75212941 | MS.gene016914:intron | 35.0% | |
| CAATTCCTATGTGACTGATT+TGG | + | chr5.2:75215013-75215032 | MS.gene016914:intron | 35.0% | |
| CCTAAACTTCACAACAACTT+GGG | - | chr5.2:75214484-75214503 | None:intergenic | 35.0% | |
| CTTACTCTCTTTCTTCTTTG+CGG | - | chr5.2:75214682-75214701 | None:intergenic | 35.0% | |
| GACATAGTTGTTAGCTAAGT+TGG | + | chr5.2:75214385-75214404 | MS.gene016914:intron | 35.0% | |
| GACATGACATACTATAAGGA+TGG | + | chr5.2:75214312-75214331 | MS.gene016914:intron | 35.0% | |
| GCAATGATTAAAAACATGCG+TGG | - | chr5.2:75214175-75214194 | None:intergenic | 35.0% | |
| TAGCTAACAACTATGTCACT+TGG | - | chr5.2:75214382-75214401 | None:intergenic | 35.0% | |
| TTACTCTCTTTCTTCTTTGC+GGG | - | chr5.2:75214681-75214700 | None:intergenic | 35.0% | |
| TTATGTCACGTAGAGTTGTA+TGG | + | chr5.2:75213305-75213324 | MS.gene016914:intron | 35.0% | |
| !! | AAGTATTGTCCTTTTTCGTG+TGG | - | chr5.2:75213954-75213973 | None:intergenic | 35.0% |
| !! | GCTAAGTTGGTAACTATGAA+AGG | + | chr5.2:75214398-75214417 | MS.gene016914:intron | 35.0% |
| !! | GGGTTTTTCAAATTCTATGC+TGG | + | chr5.2:75212767-75212786 | MS.gene016914:intron | 35.0% |
| AACCATCCATGTTGCTATCT+TGG | - | chr5.2:75214097-75214116 | None:intergenic | 40.0% | |
| ACAAGCCAAATCAGTCACAT+AGG | - | chr5.2:75215021-75215040 | None:intergenic | 40.0% | |
| CCCAAGTTGTTGTGAAGTTT+AGG | + | chr5.2:75214481-75214500 | MS.gene016914:intron | 40.0% | |
| CTATCAGGTTCAACTAACAC+AGG | - | chr5.2:75214350-75214369 | None:intergenic | 40.0% | |
| CTCTGGACATACTCGTTAAT+TGG | - | chr5.2:75215168-75215187 | None:intergenic | 40.0% | |
| CTGTGAGTCTTTCTTCAATG+AGG | - | chr5.2:75215140-75215159 | None:intergenic | 40.0% | |
| GATGATGATCTTGACCTCTT+TGG | + | chr5.2:75214600-75214619 | MS.gene016914:CDS | 40.0% | |
| TCAGATCTTCACACAGAAGA+GGG | + | chr5.2:75212520-75212539 | MS.gene016914:CDS | 40.0% | |
| TCCAGAGAGGAAATCATTGA+GGG | - | chr5.2:75212554-75212573 | None:intergenic | 40.0% | |
| TCTGCTTGATGTTAAGCCAT+GGG | + | chr5.2:75214841-75214860 | MS.gene016914:CDS | 40.0% | |
| TGAAACAGAGGAGGATAAGA+AGG | + | chr5.2:75214626-75214645 | MS.gene016914:CDS | 40.0% | |
| TGAAATTCCCGGTTTAACCT+GGG | + | chr5.2:75214910-75214929 | MS.gene016914:CDS | 40.0% | |
| TGCGTGGATCTCATTAAGAA+AGG | - | chr5.2:75214159-75214178 | None:intergenic | 40.0% | |
| TGGCTTAACATCAAGCAGAA+TGG | - | chr5.2:75214840-75214859 | None:intergenic | 40.0% | |
| TTCCAGAGAGGAAATCATTG+AGG | - | chr5.2:75212555-75212574 | None:intergenic | 40.0% | |
| TTCTGCTTGATGTTAAGCCA+TGG | + | chr5.2:75214840-75214859 | MS.gene016914:CDS | 40.0% | |
| TTCTGTGTGAAGATCTGAGA+AGG | - | chr5.2:75212518-75212537 | None:intergenic | 40.0% | |
| TTGAAATTCCCGGTTTAACC+TGG | + | chr5.2:75214909-75214928 | MS.gene016914:CDS | 40.0% | |
| TTTCAGCCAAGATAGCAACA+TGG | + | chr5.2:75214088-75214107 | MS.gene016914:intron | 40.0% | |
| ! | GAGATACATACAGCTTTAGC+AGG | - | chr5.2:75213239-75213258 | None:intergenic | 40.0% |
| ! | TTTTAACATACATGCTCCCC+AGG | - | chr5.2:75214930-75214949 | None:intergenic | 40.0% |
| !! | ACATTGGCAAAAGCATCACT+TGG | - | chr5.2:75212983-75213002 | None:intergenic | 40.0% |
| AGAAAGGAGCTCTACAGTAC+TGG | - | chr5.2:75214143-75214162 | None:intergenic | 45.0% | |
| AGACATGAAGAAGCTGGAAG+AGG | + | chr5.2:75214874-75214893 | MS.gene016914:CDS | 45.0% | |
| AGCCAAGATAGCAACATGGA+TGG | + | chr5.2:75214092-75214111 | MS.gene016914:intron | 45.0% | |
| AGTTTCCCTGGAAAAGCTCA+AGG | + | chr5.2:75213176-75213195 | MS.gene016914:intron | 45.0% | |
| ATAAGAAGGCAGCAGAGGAA+AGG | + | chr5.2:75214640-75214659 | MS.gene016914:CDS | 45.0% | |
| ATCGTACCAACCAGCAACAT+TGG | - | chr5.2:75212999-75213018 | None:intergenic | 45.0% | |
| ATGTCTGTCTCATCATCCCA+TGG | - | chr5.2:75214860-75214879 | None:intergenic | 45.0% | |
| CCTCTGTTTCATCACCAAAG+AGG | - | chr5.2:75214617-75214636 | None:intergenic | 45.0% | |
| CTCAGATCTTCACACAGAAG+AGG | + | chr5.2:75212519-75212538 | MS.gene016914:CDS | 45.0% | |
| GAAATTCCCGGTTTAACCTG+GGG | + | chr5.2:75214911-75214930 | MS.gene016914:CDS | 45.0% | |
| GCTCAAGGTGTGAAATTCAG+TGG | + | chr5.2:75213191-75213210 | MS.gene016914:CDS | 45.0% | |
| TAAGAAGGCAGCAGAGGAAA+GGG | + | chr5.2:75214641-75214660 | MS.gene016914:CDS | 45.0% | |
| TCATCATCATCTTCAGCAGC+AGG | - | chr5.2:75214588-75214607 | None:intergenic | 45.0% | |
| TCCCTCAATGATTTCCTCTC+TGG | + | chr5.2:75212550-75212569 | MS.gene016914:CDS | 45.0% | |
| TCTCTTCACATCTTGCTGCA+AGG | + | chr5.2:75213023-75213042 | MS.gene016914:CDS | 45.0% | |
| TGAGACAGACATGAAGAAGC+TGG | + | chr5.2:75214868-75214887 | MS.gene016914:CDS | 45.0% | |
| ! | AAGCTGGTTGCTGTTGGATA+CGG | + | chr5.2:75215057-75215076 | MS.gene016914:CDS | 45.0% |
| ! | CTTTTGCCAATGTTGCTGGT+TGG | + | chr5.2:75212990-75213009 | MS.gene016914:CDS | 45.0% |
| ! | GATGCTTTTGCCAATGTTGC+TGG | + | chr5.2:75212986-75213005 | MS.gene016914:CDS | 45.0% |
| ! | TCACACCTTGAGCTTTTCCA+GGG | - | chr5.2:75213184-75213203 | None:intergenic | 45.0% |
| ! | TGCATTTGTTACAGCCAAGC+TGG | + | chr5.2:75215041-75215060 | MS.gene016914:intron | 45.0% |
| ! | TTCACACCTTGAGCTTTTCC+AGG | - | chr5.2:75213185-75213204 | None:intergenic | 45.0% |
| !! | CCTCTTTGGTGATGAAACAG+AGG | + | chr5.2:75214614-75214633 | MS.gene016914:CDS | 45.0% |
| !! | CTTTGGTGATGAAACAGAGG+AGG | + | chr5.2:75214617-75214636 | MS.gene016914:CDS | 45.0% |
| ACATGCTCCCCAGGTTAAAC+CGG | - | chr5.2:75214921-75214940 | None:intergenic | 50.0% | |
| ATGCGACAATGTCACAGCTC+TGG | - | chr5.2:75215185-75215204 | None:intergenic | 50.0% | |
| GTATCCAACAGCAACCAGCT+TGG | - | chr5.2:75215058-75215077 | None:intergenic | 50.0% | |
| ! | GTTCGCAGCGTTGAAATTCC+CGG | + | chr5.2:75214899-75214918 | MS.gene016914:CDS | 50.0% |
| ACAGCCAAGCTGGTTGCTGT+TGG | + | chr5.2:75215051-75215070 | MS.gene016914:intron | 55.0% | |
| CATGCTCCCCAGGTTAAACC+GGG | - | chr5.2:75214920-75214939 | None:intergenic | 55.0% | |
| GGAGGATAAGAAGGCAGCAG+AGG | + | chr5.2:75214635-75214654 | MS.gene016914:CDS | 55.0% | |
| GAAGGCAGCAGAGGAAAGGG+AGG | + | chr5.2:75214644-75214663 | MS.gene016914:CDS | 60.0% | |
| TTAGCAGGTGCTCCTGCAGC+TGG | - | chr5.2:75213224-75213243 | None:intergenic | 60.0% | |
| !! | AGTGGAAGTGCTCCAGCTGC+AGG | + | chr5.2:75213209-75213228 | MS.gene016914:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 75212505 | 75215218 | 75212505 | ID=MS.gene016914 |
| chr5.2 | mRNA | 75212505 | 75215218 | 75212505 | ID=MS.gene016914.t1;Parent=MS.gene016914 |
| chr5.2 | exon | 75212505 | 75212590 | 75212505 | ID=MS.gene016914.t1.exon1;Parent=MS.gene016914.t1 |
| chr5.2 | CDS | 75212505 | 75212590 | 75212505 | ID=cds.MS.gene016914.t1;Parent=MS.gene016914.t1 |
| chr5.2 | exon | 75212928 | 75213044 | 75212928 | ID=MS.gene016914.t1.exon2;Parent=MS.gene016914.t1 |
| chr5.2 | CDS | 75212928 | 75213044 | 75212928 | ID=cds.MS.gene016914.t1;Parent=MS.gene016914.t1 |
| chr5.2 | exon | 75213178 | 75213247 | 75213178 | ID=MS.gene016914.t1.exon3;Parent=MS.gene016914.t1 |
| chr5.2 | CDS | 75213178 | 75213247 | 75213178 | ID=cds.MS.gene016914.t1;Parent=MS.gene016914.t1 |
| chr5.2 | exon | 75214579 | 75214696 | 75214579 | ID=MS.gene016914.t1.exon4;Parent=MS.gene016914.t1 |
| chr5.2 | CDS | 75214579 | 75214696 | 75214579 | ID=cds.MS.gene016914.t1;Parent=MS.gene016914.t1 |
| chr5.2 | exon | 75214825 | 75214938 | 75214825 | ID=MS.gene016914.t1.exon5;Parent=MS.gene016914.t1 |
| chr5.2 | CDS | 75214825 | 75214938 | 75214825 | ID=cds.MS.gene016914.t1;Parent=MS.gene016914.t1 |
| chr5.2 | exon | 75215055 | 75215218 | 75215055 | ID=MS.gene016914.t1.exon6;Parent=MS.gene016914.t1 |
| chr5.2 | CDS | 75215055 | 75215218 | 75215055 | ID=cds.MS.gene016914.t1;Parent=MS.gene016914.t1 |
| Gene Sequence |
| Protein sequence |
