Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037669.t1 | RHN74026.1 | 98.3 | 233 | 2 | 1 | 1 | 231 | 1 | 233 | 3.20E-83 | 318.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037669.t1 | P93447 | 80.3 | 229 | 42 | 1 | 1 | 229 | 1 | 226 | 1.5e-65 | 250.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037669.t1 | A0A396J742 | 98.3 | 233 | 2 | 1 | 1 | 231 | 1 | 233 | 2.3e-83 | 318.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81545 | MS.gene037669 | PPI |
| MS.gene54761 | MS.gene037669 | PPI |
| MS.gene016914 | MS.gene037669 | PPI |
| MS.gene54763 | MS.gene037669 | PPI |
| MS.gene074184 | MS.gene037669 | PPI |
| MS.gene006000 | MS.gene037669 | PPI |
| MS.gene043773 | MS.gene037669 | PPI |
| MS.gene041769 | MS.gene037669 | PPI |
| MS.gene34006 | MS.gene037669 | PPI |
| MS.gene001097 | MS.gene037669 | PPI |
| MS.gene041766 | MS.gene037669 | PPI |
| MS.gene92572 | MS.gene037669 | PPI |
| MS.gene47052 | MS.gene037669 | PPI |
| MS.gene036405 | MS.gene037669 | PPI |
| MS.gene057052 | MS.gene037669 | PPI |
| MS.gene074183 | MS.gene037669 | PPI |
| MS.gene005994 | MS.gene037669 | PPI |
| MS.gene73243 | MS.gene037669 | PPI |
| MS.gene34008 | MS.gene037669 | PPI |
| MS.gene005996 | MS.gene037669 | PPI |
| MS.gene39764 | MS.gene037669 | PPI |
| MS.gene058469 | MS.gene037669 | PPI |
| MS.gene37588 | MS.gene037669 | PPI |
| MS.gene33103 | MS.gene037669 | PPI |
| MS.gene048096 | MS.gene037669 | PPI |
| MS.gene47051 | MS.gene037669 | PPI |
| MS.gene041771 | MS.gene037669 | PPI |
| MS.gene68663 | MS.gene037669 | PPI |
| MS.gene016105 | MS.gene037669 | PPI |
| MS.gene001098 | MS.gene037669 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037669.t1 | MTR_4g019610 | 96.567 | 233 | 6 | 1 | 1 | 231 | 1 | 233 | 2.40e-162 | 448 |
| MS.gene037669.t1 | MTR_2g461200 | 96.970 | 231 | 5 | 1 | 1 | 229 | 1 | 231 | 5.27e-161 | 444 |
| MS.gene037669.t1 | MTR_2g461200 | 96.970 | 231 | 5 | 1 | 1 | 229 | 1 | 231 | 9.16e-161 | 445 |
| MS.gene037669.t1 | MTR_4g019610 | 96.121 | 232 | 7 | 1 | 1 | 230 | 1 | 232 | 8.44e-160 | 443 |
| MS.gene037669.t1 | MTR_2g461200 | 94.444 | 180 | 8 | 1 | 1 | 178 | 1 | 180 | 1.28e-95 | 277 |
| MS.gene037669.t1 | MTR_5g088660 | 59.825 | 229 | 86 | 3 | 1 | 229 | 1 | 223 | 2.58e-81 | 243 |
| MS.gene037669.t1 | MTR_5g088685 | 75.000 | 48 | 12 | 0 | 131 | 178 | 2 | 49 | 6.09e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037669.t1 | AT2G18110 | 80.263 | 228 | 42 | 2 | 5 | 229 | 4 | 231 | 9.86e-112 | 320 |
| MS.gene037669.t1 | AT1G30230 | 77.391 | 230 | 49 | 2 | 5 | 231 | 4 | 233 | 4.56e-108 | 311 |
| MS.gene037669.t1 | AT1G30230 | 77.193 | 228 | 49 | 2 | 5 | 229 | 4 | 231 | 2.40e-106 | 306 |
| MS.gene037669.t1 | AT5G12110 | 61.304 | 230 | 86 | 3 | 1 | 229 | 1 | 228 | 1.22e-78 | 236 |
| MS.gene037669.t1 | AT5G19510 | 62.009 | 229 | 82 | 2 | 1 | 229 | 1 | 224 | 5.03e-73 | 221 |
Find 59 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCTGTAGTGGTGTTTC+TGG | 0.150024 | 4.3:+79221973 | MS.gene037669:intron |
| TTCAGTTGGAAGGGTTGTTC+TGG | 0.178098 | 4.3:+79222368 | MS.gene037669:CDS |
| TCAGTTCCATCATATGAATA+TGG | 0.245099 | 4.3:+79221753 | MS.gene037669:CDS |
| TCTTGTTTCCGTCGACAATA+TGG | 0.332439 | 4.3:+79224763 | MS.gene037669:CDS |
| GCTGCCTTTGTGTCAGAAAC+TGG | 0.355924 | 4.3:-79222057 | None:intergenic |
| TCAGTTGGAAGGGTTGTTCT+GGG | 0.356979 | 4.3:+79222369 | MS.gene037669:CDS |
| TTCTTGATACCGTACCCAAC+AGG | 0.380470 | 4.3:-79224710 | None:intergenic |
| GATGATGATGTTGATTTGTT+TGG | 0.387949 | 4.3:+79222093 | MS.gene037669:CDS |
| TATAACCTTAAGGCTGAATC+TGG | 0.393170 | 4.3:+79221548 | MS.gene037669:CDS |
| GAAGAAGGCAGCTGAGGAAC+GGG | 0.395604 | 4.3:+79222134 | MS.gene037669:CDS |
| TCAAGCCAGATTCAGCCTTA+AGG | 0.411025 | 4.3:-79221553 | None:intergenic |
| TCAAATTATGCTTACTATTG+TGG | 0.416944 | 4.3:+79224736 | MS.gene037669:CDS |
| GGTGTTTCTGGTGAGGGATC+TGG | 0.436594 | 4.3:+79221985 | MS.gene037669:CDS |
| GCAGCAGCCGTGAAGGCATC+CGG | 0.445711 | 4.3:+79222156 | MS.gene037669:CDS |
| AGTCACATTCTATAACCTTA+AGG | 0.451347 | 4.3:+79221538 | MS.gene037669:CDS |
| ACTCTGGACATACTCGTTGA+TGG | 0.453826 | 4.3:-79224810 | None:intergenic |
| CAGTTCCATCATATGAATAT+GGG | 0.459928 | 4.3:+79221754 | MS.gene037669:CDS |
| GTACCCAACAGGGACAAGTT+TGG | 0.474254 | 4.3:-79224699 | None:intergenic |
| CAGCCAAACTTGTCCCTGTT+GGG | 0.476052 | 4.3:+79224696 | MS.gene037669:intron |
| TTCCGTCGACAATATGGTTG+AGG | 0.490036 | 4.3:+79224769 | MS.gene037669:CDS |
| TAATGTCATCCTTTGAAGCT+TGG | 0.497827 | 4.3:-79221710 | None:intergenic |
| AGCAGTGAGATCTGTTCAGT+TGG | 0.499725 | 4.3:+79222354 | MS.gene037669:CDS |
| ACATTCCCATATTCATATGA+TGG | 0.500557 | 4.3:-79221759 | None:intergenic |
| GTGAGATCTGTTCAGTTGGA+AGG | 0.509565 | 4.3:+79222358 | MS.gene037669:CDS |
| TGGAAAATCATCTGTACTGT+TGG | 0.509794 | 4.3:+79222285 | MS.gene037669:CDS |
| AGAAGAAGGCAGCTGAGGAA+CGG | 0.514292 | 4.3:+79222133 | MS.gene037669:CDS |
| TTCTTCGAGCTTCTTCATGT+CGG | 0.515820 | 4.3:-79222332 | None:intergenic |
| TATTCATATGATGGAACTGA+TGG | 0.520528 | 4.3:-79221750 | None:intergenic |
| AGAGACTGAGGAAGAGAAGA+AGG | 0.523236 | 4.3:+79222119 | MS.gene037669:CDS |
| GTTTAGGTACCAAGCTTCAA+AGG | 0.531194 | 4.3:+79221701 | MS.gene037669:intron |
| ATGTCGGTTTCATCATCCCA+TGG | 0.531275 | 4.3:-79222316 | None:intergenic |
| TGTAGTGGTGTTTCTGGTGA+GGG | 0.534968 | 4.3:+79221979 | MS.gene037669:intron |
| CTCACACGCAGTTACATCAC+TGG | 0.535094 | 4.3:+79221596 | MS.gene037669:CDS |
| ACAGCCAAACTTGTCCCTGT+TGG | 0.544104 | 4.3:+79224695 | MS.gene037669:intron |
| CTCTGGACATACTCGTTGAT+GGG | 0.546234 | 4.3:-79224809 | None:intergenic |
| AAACTTGTCCCTGTTGGGTA+CGG | 0.548491 | 4.3:+79224701 | MS.gene037669:CDS |
| CAGTTGGAAGGGTTGTTCTG+GGG | 0.550288 | 4.3:+79222370 | MS.gene037669:CDS |
| TTCTGACACAAAGGCAGCTG+AGG | 0.553231 | 4.3:+79222062 | MS.gene037669:CDS |
| TACTGTTGGATGTGAAGCCA+TGG | 0.557522 | 4.3:+79222299 | MS.gene037669:CDS |
| GGAACGGGCAGCAGCCGTGA+AGG | 0.572363 | 4.3:+79222149 | MS.gene037669:CDS |
| TGAGATCTGTTCAGTTGGAA+GGG | 0.572783 | 4.3:+79222359 | MS.gene037669:CDS |
| CTGTAGTGGTGTTTCTGGTG+AGG | 0.577236 | 4.3:+79221978 | MS.gene037669:intron |
| AAGCCACAATGTCACAACTC+TGG | 0.585892 | 4.3:-79224826 | None:intergenic |
| ATCCTCAACCATATTGTCGA+CGG | 0.593242 | 4.3:-79224771 | None:intergenic |
| CACCGTGGAATCTTCTCTTG+TGG | 0.597197 | 4.3:+79222011 | MS.gene037669:CDS |
| ATGAATATGGGAATGTTGCT+AGG | 0.597917 | 4.3:+79221766 | MS.gene037669:CDS |
| GGAAGAGAAGAAGGCAGCTG+AGG | 0.604357 | 4.3:+79222128 | MS.gene037669:CDS |
| TGTGTCAGAAACTGGAGGAG+TGG | 0.624152 | 4.3:-79222049 | None:intergenic |
| TGTCCAGAGTTGTGACATTG+TGG | 0.628474 | 4.3:+79224823 | MS.gene037669:CDS |
| TCCTCCAGTTTCTGACACAA+AGG | 0.631021 | 4.3:+79222053 | MS.gene037669:CDS |
| GCCTTTGTGTCAGAAACTGG+AGG | 0.631902 | 4.3:-79222054 | None:intergenic |
| TCACACGCAGTTACATCACT+GGG | 0.638579 | 4.3:+79221597 | MS.gene037669:CDS |
| TGATGTAACTGCGTGTGAGA+AGG | 0.646574 | 4.3:-79221592 | None:intergenic |
| AGCCACAAGAGAAGATTCCA+CGG | 0.646775 | 4.3:-79222013 | None:intergenic |
| ACTGTTGGATGTGAAGCCAT+GGG | 0.650142 | 4.3:+79222300 | MS.gene037669:CDS |
| TCTTGATACCGTACCCAACA+GGG | 0.655761 | 4.3:-79224709 | None:intergenic |
| TTTGTTTGGTGAAGAGACTG+AGG | 0.673347 | 4.3:+79222107 | MS.gene037669:CDS |
| TGAGGGATCTGGTGTCACCG+TGG | 0.761218 | 4.3:+79221996 | MS.gene037669:CDS |
| AATATGGGAATGTTGCTAGG+TGG | 0.778608 | 4.3:+79221769 | MS.gene037669:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATCTAAATAATAAAAAA+AGG | + | chr4.3:79223853-79223872 | MS.gene037669:intron | 10.0% |
| !! | CTAATCTAAATAATAAAAAA+AGG | - | chr4.3:79223872-79223853 | None:intergenic | 10.0% |
| !!! | TGTAAATTAACATTTTTTTT+AGG | - | chr4.3:79223819-79223838 | None:intergenic | 10.0% |
| !! | ATCTAAATAATAAAAAAAGG+AGG | + | chr4.3:79223856-79223875 | MS.gene037669:intron | 15.0% |
| !! | ATCTAAATAATAAAAAAAGG+AGG | - | chr4.3:79223875-79223856 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAGGATAAAAA+AGG | - | chr4.3:79222926-79222945 | None:intergenic | 15.0% |
| !!! | ATTGAAAAACAGTAATTTTA+TGG | - | chr4.3:79224531-79224550 | None:intergenic | 15.0% |
| !!! | TATAATAAAGATTTTGTTTG+CGG | + | chr4.3:79221883-79221902 | MS.gene037669:intron | 15.0% |
| !!! | TGTTTTTATTTGATTTGTTT+AGG | + | chr4.3:79221685-79221704 | MS.gene037669:intron | 15.0% |
| !!! | TTAAGTTCCAATTTTTTTAT+GGG | - | chr4.3:79223888-79223907 | None:intergenic | 15.0% |
| !!! | TTTAAGTTCCAATTTTTTTA+TGG | - | chr4.3:79223889-79223908 | None:intergenic | 15.0% |
| !!! | TTTTATAAATTCCATTTAGT+TGG | - | chr4.3:79224080-79224099 | None:intergenic | 15.0% |
| !! | AAAAACAGAGTTGAAAATAA+AGG | + | chr4.3:79224243-79224262 | MS.gene037669:intron | 20.0% |
| !! | AAATTCTAACCCAAAAAAAT+TGG | + | chr4.3:79223787-79223806 | MS.gene037669:intron | 20.0% |
| !! | CATATAAAATTGTAGCAAAA+GGG | + | chr4.3:79224134-79224153 | MS.gene037669:intron | 20.0% |
| !! | TATGTATAATTGACAAAGAT+CGG | - | chr4.3:79221840-79221859 | None:intergenic | 20.0% |
| !! | TGATTCAAATGAATTGTATT+CGG | + | chr4.3:79221913-79221932 | MS.gene037669:intron | 20.0% |
| !! | TGGATAAAAAATTAGACTAT+TGG | - | chr4.3:79222645-79222664 | None:intergenic | 20.0% |
| !!! | CTTGCTATTACAAAAAAAAA+AGG | + | chr4.3:79223762-79223781 | MS.gene037669:intron | 20.0% |
| !!! | CTTGCTATTACAAAAAAAAA+AGG | - | chr4.3:79223781-79223762 | None:intergenic | 20.0% |
| !!! | TAAGTTCCAATTTTTTTATG+GGG | - | chr4.3:79223887-79223906 | None:intergenic | 20.0% |
| !!! | TATGTTTTTTTGTTCTTCAT+AGG | + | chr4.3:79221625-79221644 | MS.gene037669:intron | 20.0% |
| ! | AAACTTGCACAATTTCAATA+AGG | + | chr4.3:79223178-79223197 | MS.gene037669:intron | 25.0% |
| ! | AAACTTGCACAATTTCAATA+AGG | - | chr4.3:79223197-79223178 | None:intergenic | 25.0% |
| ! | AATAGACGAAAAGATAAGAA+CGG | - | chr4.3:79222421-79222440 | None:intergenic | 25.0% |
| ! | ATAATAAAAAAAGGAGGATG+AGG | - | chr4.3:79222832-79222851 | None:intergenic | 25.0% |
| ! | CCATATAAAATTGTAGCAAA+AGG | + | chr4.3:79224133-79224152 | MS.gene037669:intron | 25.0% |
| ! | GAAATTCCCCATAAAAAAAT+TGG | + | chr4.3:79223878-79223897 | MS.gene037669:intron | 25.0% |
| ! | TCAAATTATGCTTACTATTG+TGG | + | chr4.3:79224736-79224755 | MS.gene037669:CDS | 25.0% |
| ! | TGTTGTATACTATTCTTCAA+GGG | + | chr4.3:79222525-79222544 | MS.gene037669:intron | 25.0% |
| ! | TTGAAAATAAAGGAGAAAGA+AGG | + | chr4.3:79224253-79224272 | MS.gene037669:intron | 25.0% |
| ! | TTGATTTCCATTGAAAAACT+CGG | + | chr4.3:79224167-79224186 | MS.gene037669:intron | 25.0% |
| ! | TTGTTGTATACTATTCTTCA+AGG | + | chr4.3:79222524-79222543 | MS.gene037669:intron | 25.0% |
| !! | CCTTTTGCTACAATTTTATA+TGG | - | chr4.3:79224136-79224155 | None:intergenic | 25.0% |
| !! | TTTTGTAATAGCAAGTACAT+GGG | - | chr4.3:79222960-79222941 | None:intergenic | 25.0% |
| !! | TTTTTGTAATAGCAAGTACA+TGG | - | chr4.3:79222959-79222940 | None:intergenic | 25.0% |
| !!! | AAAGTTTGTTTTCACGATTT+TGG | - | chr4.3:79222665-79222684 | None:intergenic | 25.0% |
| !!! | ACTCATAATTTGTTGAAATC+TGG | + | chr4.3:79222215-79222234 | MS.gene037669:intron | 25.0% |
| !!! | AGGATGATACCAATTTTTTT+GGG | - | chr4.3:79223799-79223818 | None:intergenic | 25.0% |
| !!! | ATAATTTGTTGAAATCTGGT+TGG | + | chr4.3:79222219-79222238 | MS.gene037669:intron | 25.0% |
| !!! | TAGGATGATACCAATTTTTT+TGG | - | chr4.3:79223800-79223819 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTGTGTCTGTAG+TGG | + | chr4.3:79221964-79221983 | MS.gene037669:intron | 25.0% |
| AAGGCAACCAAAAAAGAAAT+AGG | + | chr4.3:79223218-79223237 | MS.gene037669:intron | 30.0% | |
| ACATTCCCATATTCATATGA+TGG | - | chr4.3:79221762-79221781 | None:intergenic | 30.0% | |
| AGAAGAAAGAAACACAAAGA+GGG | - | chr4.3:79222733-79222752 | None:intergenic | 30.0% | |
| AGTCACATTCTATAACCTTA+AGG | + | chr4.3:79221538-79221557 | MS.gene037669:CDS | 30.0% | |
| ATAATTGACAAAGATCGGAA+TGG | - | chr4.3:79221835-79221854 | None:intergenic | 30.0% | |
| CACGTAAAAATGTTGTAGAA+GGG | + | chr4.3:79224035-79224054 | MS.gene037669:intron | 30.0% | |
| CAGTTCCATCATATGAATAT+GGG | + | chr4.3:79221754-79221773 | MS.gene037669:CDS | 30.0% | |
| GTTAACTTCAAAAGGAGTTT+GGG | - | chr4.3:79223542-79223561 | None:intergenic | 30.0% | |
| TAATTGACAAAGATCGGAAT+GGG | - | chr4.3:79221834-79221853 | None:intergenic | 30.0% | |
| TCAGTTCCATCATATGAATA+TGG | + | chr4.3:79221753-79221772 | MS.gene037669:CDS | 30.0% | |
| TTTGATCTGTCACAAAGAAT+GGG | + | chr4.3:79223694-79223713 | MS.gene037669:intron | 30.0% | |
| ! | CTTACTTTCTTTCTTTTTGC+CGG | - | chr4.3:79222178-79222197 | None:intergenic | 30.0% |
| ! | TATTCATATGATGGAACTGA+TGG | - | chr4.3:79221753-79221772 | None:intergenic | 30.0% |
| ! | TTTTGATCTGTCACAAAGAA+TGG | + | chr4.3:79223693-79223712 | MS.gene037669:intron | 30.0% |
| !! | GATGATGATGTTGATTTGTT+TGG | + | chr4.3:79222093-79222112 | MS.gene037669:CDS | 30.0% |
| !!! | ACTGCTGATTTTAAATGACT+AGG | - | chr4.3:79223032-79223051 | None:intergenic | 30.0% |
| !!! | AGCAGATCCTATTTCTTTTT+TGG | - | chr4.3:79223228-79223247 | None:intergenic | 30.0% |
| !!! | CCTTTTGAAGTTAACCATTT+CGG | + | chr4.3:79223547-79223566 | MS.gene037669:intron | 30.0% |
| !!! | CTGCTGATTTTAAATGACTA+GGG | - | chr4.3:79223031-79223050 | None:intergenic | 30.0% |
| !!! | TTCTTTTTTGGTTGCCTTAT+AGG | - | chr4.3:79223216-79223235 | None:intergenic | 30.0% |
| AAAAAAAGGAGGATGAGGTT+GGG | - | chr4.3:79222827-79222846 | None:intergenic | 35.0% | |
| AAGAAGGATAGATCCAAATC+AGG | + | chr4.3:79224269-79224288 | MS.gene037669:intron | 35.0% | |
| AGAAGAAAGAAACACAGAGA+GGG | + | chr4.3:79224447-79224466 | MS.gene037669:intron | 35.0% | |
| ATAGGGAGAAGAGTTTATCA+TGG | + | chr4.3:79224388-79224407 | MS.gene037669:intron | 35.0% | |
| ATAGGGAGAAGAGTTTATCA+TGG | - | chr4.3:79224407-79224388 | None:intergenic | 35.0% | |
| ATGAATATGGGAATGTTGCT+AGG | + | chr4.3:79221766-79221785 | MS.gene037669:CDS | 35.0% | |
| CATTGATGCATAAGGATTTG+GGG | - | chr4.3:79223396-79223415 | None:intergenic | 35.0% | |
| CCACGTAAAAATGTTGTAGA+AGG | + | chr4.3:79224034-79224053 | MS.gene037669:intron | 35.0% | |
| CCGAAATGGTTAACTTCAAA+AGG | - | chr4.3:79223550-79223569 | None:intergenic | 35.0% | |
| CTATCGGAAAACAACCATTA+TGG | - | chr4.3:79224308-79224327 | None:intergenic | 35.0% | |
| GAAGAGTTTATCATGGTTGT+TGG | + | chr4.3:79224395-79224414 | MS.gene037669:intron | 35.0% | |
| GAAGAGTTTATCATGGTTGT+TGG | - | chr4.3:79224414-79224395 | None:intergenic | 35.0% | |
| GAGAAGAAAGAAACACAAAG+AGG | - | chr4.3:79222734-79222753 | None:intergenic | 35.0% | |
| GAGAGATTTGTGTGTGAATA+GGG | - | chr4.3:79222797-79222816 | None:intergenic | 35.0% | |
| GGTTAACTTCAAAAGGAGTT+TGG | - | chr4.3:79223543-79223562 | None:intergenic | 35.0% | |
| GGTTTCAATTGGATCAGTTA+TGG | + | chr4.3:79223596-79223615 | MS.gene037669:intron | 35.0% | |
| TAAAAAAAGGAGGATGAGGT+TGG | - | chr4.3:79222828-79222847 | None:intergenic | 35.0% | |
| TATAACCTTAAGGCTGAATC+TGG | + | chr4.3:79221548-79221567 | MS.gene037669:CDS | 35.0% | |
| TCTGGTTGGACATCAATTTA+TGG | + | chr4.3:79222233-79222252 | MS.gene037669:intron | 35.0% | |
| TGAGAGATTTGTGTGTGAAT+AGG | - | chr4.3:79222798-79222817 | None:intergenic | 35.0% | |
| TGGAAAATCATCTGTACTGT+TGG | + | chr4.3:79222285-79222304 | MS.gene037669:CDS | 35.0% | |
| TGGATCAAGTGAGATATGAT+GGG | - | chr4.3:79222625-79222644 | None:intergenic | 35.0% | |
| TTGGATCAAGTGAGATATGA+TGG | - | chr4.3:79222626-79222645 | None:intergenic | 35.0% | |
| TTTGATCTGTCTCAGAGAAT+GGG | - | chr4.3:79223004-79223023 | None:intergenic | 35.0% | |
| ! | ACATTTTTACGTGGTCGTTT+TGG | - | chr4.3:79224028-79224047 | None:intergenic | 35.0% |
| ! | AGATGATTTTCCACCTAGAA+TGG | - | chr4.3:79222278-79222297 | None:intergenic | 35.0% |
| ! | CCCTAGTCATTTAAAATCAG+CGG | - | chr4.3:79223047-79223028 | None:intergenic | 35.0% |
| ! | CCTTCTACAACATTTTTACG+TGG | - | chr4.3:79224037-79224056 | None:intergenic | 35.0% |
| ! | CTGGTGCACAAATAAGATTT+TGG | + | chr4.3:79222553-79222572 | MS.gene037669:intron | 35.0% |
| ! | GCATTGATGCATAAGGATTT+GGG | - | chr4.3:79223397-79223416 | None:intergenic | 35.0% |
| ! | TTTTCTGCTCATTCCATTCT+AGG | + | chr4.3:79222262-79222281 | MS.gene037669:intron | 35.0% |
| ! | TTTTGATCTGTCTCAGAGAA+TGG | - | chr4.3:79223005-79223024 | None:intergenic | 35.0% |
| !! | ACAAGTTTGTTTTCCCCTAT+TGG | + | chr4.3:79222586-79222605 | MS.gene037669:intron | 35.0% |
| !! | ACTAGATCCGAGTTTTTCAA+TGG | - | chr4.3:79224177-79224196 | None:intergenic | 35.0% |
| !! | AGCAGATCCTATTTCTTTTC+TGG | + | chr4.3:79223469-79223488 | MS.gene037669:intron | 35.0% |
| !! | CAAGTTTGTTTTCCCCTATT+GGG | + | chr4.3:79222587-79222606 | MS.gene037669:intron | 35.0% |
| !! | CATAATGGTTGTTTTCCGAT+AGG | + | chr4.3:79224306-79224325 | MS.gene037669:intron | 35.0% |
| !! | GTTGTTTGATTTGTGACATG+AGG | + | chr4.3:79224336-79224355 | MS.gene037669:intron | 35.0% |
| !! | TAATGTCATCCTTTGAAGCT+TGG | - | chr4.3:79221713-79221732 | None:intergenic | 35.0% |
| !! | TTGATTTGTGACATGAGGTT+GGG | + | chr4.3:79224341-79224360 | MS.gene037669:intron | 35.0% |
| !! | TTTGATTTGTGACATGAGGT+TGG | + | chr4.3:79224340-79224359 | MS.gene037669:intron | 35.0% |
| !!! | ACCGCTGATTTTAAATGACT+AGG | + | chr4.3:79223665-79223684 | MS.gene037669:intron | 35.0% |
| !!! | CCGCTGATTTTAAATGACTA+GGG | + | chr4.3:79223666-79223685 | MS.gene037669:intron | 35.0% |
| !!! | CCTTTTGAAGTTGACCATTT+CGG | - | chr4.3:79223150-79223169 | None:intergenic | 35.0% |
| !!! | GGTTTTGATTGGATCAGTTA+TGG | - | chr4.3:79223101-79223120 | None:intergenic | 35.0% |
| AAGAGATGAGAGAGAGGATT+AGG | + | chr4.3:79223574-79223593 | MS.gene037669:intron | 40.0% | |
| AAGAGATGAGAGAGAGGATT+AGG | - | chr4.3:79223593-79223574 | None:intergenic | 40.0% | |
| AAGAGATGAGATAGGGTATG+AGG | + | chr4.3:79223623-79223642 | MS.gene037669:intron | 40.0% | |
| AAGGCAGCCAGAAAAGAAAT+AGG | - | chr4.3:79223479-79223498 | None:intergenic | 40.0% | |
| AATATGGGAATGTTGCTAGG+TGG | + | chr4.3:79221769-79221788 | MS.gene037669:CDS | 40.0% | |
| ACAGATCTGTGCCAACTAAA+TGG | + | chr4.3:79224066-79224085 | MS.gene037669:intron | 40.0% | |
| ACTTGAGATTGACCCAATAG+GGG | - | chr4.3:79222602-79222621 | None:intergenic | 40.0% | |
| AGAAAGAAACACAAAGAGGG+AGG | - | chr4.3:79222730-79222749 | None:intergenic | 40.0% | |
| AGAGATGAGAGAGAGGATTA+GGG | + | chr4.3:79223575-79223594 | MS.gene037669:intron | 40.0% | |
| AGAGATGAGAGAGAGGATTA+GGG | - | chr4.3:79223594-79223575 | None:intergenic | 40.0% | |
| ATCCTCAACCATATTGTCGA+CGG | - | chr4.3:79224774-79224793 | None:intergenic | 40.0% | |
| ATGGACGAAAGAGATGAGAT+AGG | + | chr4.3:79223615-79223634 | MS.gene037669:intron | 40.0% | |
| CAAACAACACCACAACCTAT+CGG | - | chr4.3:79224324-79224343 | None:intergenic | 40.0% | |
| CATTGATGCACAAGGATTTG+GGG | + | chr4.3:79223301-79223320 | MS.gene037669:intron | 40.0% | |
| CCGAAATGGTCAACTTCAAA+AGG | + | chr4.3:79223147-79223166 | MS.gene037669:intron | 40.0% | |
| CTACAACATCACGAAGACTA+AGG | - | chr4.3:79224592-79224611 | None:intergenic | 40.0% | |
| CTCATCTCTTTCATCCGAAA+TGG | - | chr4.3:79223564-79223583 | None:intergenic | 40.0% | |
| GAAAGAAACACAAAGAGGGA+GGG | - | chr4.3:79222729-79222748 | None:intergenic | 40.0% | |
| GACTTGAGATTGACCCAATA+GGG | - | chr4.3:79222603-79222622 | None:intergenic | 40.0% | |
| GAGAAGAAAGAAACACAGAG+AGG | + | chr4.3:79224446-79224465 | MS.gene037669:intron | 40.0% | |
| GAGAGATCTGTGTGTGAATA+GGG | + | chr4.3:79224371-79224390 | MS.gene037669:intron | 40.0% | |
| GAGAGGATTAGGGTTTCAAT+TGG | + | chr4.3:79223585-79223604 | MS.gene037669:intron | 40.0% | |
| GAGTTTATCATGGTTGTTGG+AGG | + | chr4.3:79224398-79224417 | MS.gene037669:intron | 40.0% | |
| GAGTTTATCATGGTTGTTGG+AGG | - | chr4.3:79224417-79224398 | None:intergenic | 40.0% | |
| GTAATAGCAAGTACATGAGC+CGG | + | chr4.3:79222945-79222964 | MS.gene037669:intron | 40.0% | |
| GTCAACTTCAAAAGGAGTCT+GGG | + | chr4.3:79223155-79223174 | MS.gene037669:intron | 40.0% | |
| GTTTAGGTACCAAGCTTCAA+AGG | + | chr4.3:79221701-79221720 | MS.gene037669:intron | 40.0% | |
| TAATAGCAAGTACATGAGCC+GGG | + | chr4.3:79222946-79222965 | MS.gene037669:intron | 40.0% | |
| TGAGAGATCTGTGTGTGAAT+AGG | + | chr4.3:79224370-79224389 | MS.gene037669:intron | 40.0% | |
| TGAGATCTGTTCAGTTGGAA+GGG | + | chr4.3:79222359-79222378 | MS.gene037669:CDS | 40.0% | |
| TGGACGAAAGAGATGAGATA+GGG | + | chr4.3:79223616-79223635 | MS.gene037669:intron | 40.0% | |
| TTCTTCGAGCTTCTTCATGT+CGG | - | chr4.3:79222335-79222354 | None:intergenic | 40.0% | |
| TTGCAGCATAAGATGCAGTT+GGG | + | chr4.3:79223326-79223345 | MS.gene037669:intron | 40.0% | |
| TTTGCAACACCAGATGCAAT+TGG | - | chr4.3:79223372-79223391 | None:intergenic | 40.0% | |
| TTTGCAGCATAAGATGCAGT+TGG | + | chr4.3:79223325-79223344 | MS.gene037669:intron | 40.0% | |
| ! | AAGAGATGAGAGAGAGTATG+AGG | - | chr4.3:79223074-79223093 | None:intergenic | 40.0% |
| ! | GCATTGATGCACAAGGATTT+GGG | + | chr4.3:79223300-79223319 | MS.gene037669:intron | 40.0% |
| ! | TCTTGTTTCCGTCGACAATA+TGG | + | chr4.3:79224763-79224782 | MS.gene037669:CDS | 40.0% |
| ! | TTTGTTTGGTGAAGAGACTG+AGG | + | chr4.3:79222107-79222126 | MS.gene037669:CDS | 40.0% |
| !! | GAGAGGATTAGGGTTTTGAT+TGG | - | chr4.3:79223112-79223131 | None:intergenic | 40.0% |
| !! | GGCATTGATGCATAAGGATT+TGG | - | chr4.3:79223398-79223417 | None:intergenic | 40.0% |
| !! | GTTGTTGGAGGATTTGTTGT+TGG | + | chr4.3:79224410-79224429 | MS.gene037669:intron | 40.0% |
| !!! | TTCTTTTCTGGCTGCCTTAT+AGG | + | chr4.3:79223481-79223500 | MS.gene037669:intron | 40.0% |
| AAACTTGTCCCTGTTGGGTA+CGG | + | chr4.3:79224701-79224720 | MS.gene037669:CDS | 45.0% | |
| AACACCAGATGCAATTGGCA+TGG | - | chr4.3:79223367-79223386 | None:intergenic | 45.0% | |
| AAGCCACAATGTCACAACTC+TGG | - | chr4.3:79224829-79224848 | None:intergenic | 45.0% | |
| ACTCTGGACATACTCGTTGA+TGG | - | chr4.3:79224813-79224832 | None:intergenic | 45.0% | |
| ACTGTTGGATGTGAAGCCAT+GGG | + | chr4.3:79222300-79222319 | MS.gene037669:CDS | 45.0% | |
| AGAAAGAAACACAGAGAGGG+AGG | + | chr4.3:79224450-79224469 | MS.gene037669:intron | 45.0% | |
| AGAGACACACTCTCCTGATT+TGG | - | chr4.3:79224285-79224304 | None:intergenic | 45.0% | |
| AGAGACTGAGGAAGAGAAGA+AGG | + | chr4.3:79222119-79222138 | MS.gene037669:CDS | 45.0% | |
| AGATGCAGTTGGGTATGCAA+CGG | + | chr4.3:79223336-79223355 | MS.gene037669:intron | 45.0% | |
| AGCAGTGAGATCTGTTCAGT+TGG | + | chr4.3:79222354-79222373 | MS.gene037669:CDS | 45.0% | |
| AGCCACAAGAGAAGATTCCA+CGG | - | chr4.3:79222016-79222035 | None:intergenic | 45.0% | |
| ATCTGTCACAAAGAATGGGC+CGG | + | chr4.3:79223698-79223717 | MS.gene037669:intron | 45.0% | |
| CTCATCTCTTTCGTCCGAAA+TGG | + | chr4.3:79223133-79223152 | MS.gene037669:intron | 45.0% | |
| CTCTGGACATACTCGTTGAT+GGG | - | chr4.3:79224812-79224831 | None:intergenic | 45.0% | |
| CTCTGGATTCTACTATGACC+CGG | - | chr4.3:79222967-79222986 | None:intergenic | 45.0% | |
| GAAAGAAACACAGAGAGGGA+GGG | + | chr4.3:79224451-79224470 | MS.gene037669:intron | 45.0% | |
| GGACTTGAGATTGACCCAAT+AGG | - | chr4.3:79222604-79222623 | None:intergenic | 45.0% | |
| GGATGAAAGAGATGAGAGAG+AGG | + | chr4.3:79223568-79223587 | MS.gene037669:intron | 45.0% | |
| GGTCAACTTCAAAAGGAGTC+TGG | + | chr4.3:79223154-79223173 | MS.gene037669:intron | 45.0% | |
| GTAATAGCAAGTACATGGGC+CGG | - | chr4.3:79223753-79223772 | None:intergenic | 45.0% | |
| GTGAGATCTGTTCAGTTGGA+AGG | + | chr4.3:79222358-79222377 | MS.gene037669:CDS | 45.0% | |
| TAATAGCAAGTACATGGGCC+GGG | - | chr4.3:79223752-79223771 | None:intergenic | 45.0% | |
| TACTGTTGGATGTGAAGCCA+TGG | + | chr4.3:79222299-79222318 | MS.gene037669:CDS | 45.0% | |
| TCAAGCCAGATTCAGCCTTA+AGG | - | chr4.3:79221556-79221575 | None:intergenic | 45.0% | |
| TCACACGCAGTTACATCACT+GGG | + | chr4.3:79221597-79221616 | MS.gene037669:CDS | 45.0% | |
| TCAGTTGGAAGGGTTGTTCT+GGG | + | chr4.3:79222369-79222388 | MS.gene037669:CDS | 45.0% | |
| TCCTCCAGTTTCTGACACAA+AGG | + | chr4.3:79222053-79222072 | MS.gene037669:CDS | 45.0% | |
| TCTCACAGAACGCTTAGCAT+TGG | + | chr4.3:79223433-79223452 | MS.gene037669:intron | 45.0% | |
| TCTGCTCATTCCATTCTAGG+TGG | + | chr4.3:79222265-79222284 | MS.gene037669:intron | 45.0% | |
| TCTTGATACCGTACCCAACA+GGG | - | chr4.3:79224712-79224731 | None:intergenic | 45.0% | |
| TGATGTAACTGCGTGTGAGA+AGG | - | chr4.3:79221595-79221614 | None:intergenic | 45.0% | |
| TGTCCAGAGTTGTGACATTG+TGG | + | chr4.3:79224823-79224842 | MS.gene037669:CDS | 45.0% | |
| TGTGTCTGTAGTGGTGTTTC+TGG | + | chr4.3:79221973-79221992 | MS.gene037669:intron | 45.0% | |
| TTCAGTTGGAAGGGTTGTTC+TGG | + | chr4.3:79222368-79222387 | MS.gene037669:CDS | 45.0% | |
| TTCCGTCGACAATATGGTTG+AGG | + | chr4.3:79224769-79224788 | MS.gene037669:CDS | 45.0% | |
| TTCTTGATACCGTACCCAAC+AGG | - | chr4.3:79224713-79224732 | None:intergenic | 45.0% | |
| ! | AATCCAGAGTGTTCAAGACC+CGG | + | chr4.3:79222978-79222997 | MS.gene037669:intron | 45.0% |
| ! | CTATTCTTCAAGGGCATGTC+TGG | + | chr4.3:79222534-79222553 | MS.gene037669:intron | 45.0% |
| ! | GAGAGTGTGTCTCTCCATAA+TGG | + | chr4.3:79224291-79224310 | MS.gene037669:intron | 45.0% |
| ! | GGAGCTTGCTTCTTCCTATA+AGG | - | chr4.3:79223498-79223517 | None:intergenic | 45.0% |
| !! | ATGTCGGTTTCATCATCCCA+TGG | - | chr4.3:79222319-79222338 | None:intergenic | 45.0% |
| !! | GATGCTGGCATTGATGCATA+AGG | - | chr4.3:79223404-79223423 | None:intergenic | 45.0% |
| !! | GGCATTGATGCACAAGGATT+TGG | + | chr4.3:79223299-79223318 | MS.gene037669:intron | 45.0% |
| !! | GGTTGTTTTCCGATAGGTTG+TGG | + | chr4.3:79224312-79224331 | MS.gene037669:intron | 45.0% |
| !! | TGTAGTGGTGTTTCTGGTGA+GGG | + | chr4.3:79221979-79221998 | MS.gene037669:intron | 45.0% |
| !!! | AAATTAACTTTTTTTTTTTT+TGG | + | chr4.3:79222888-79222907 | MS.gene037669:intron | 5.0% |
| !!! | AATTAACTTTTTTTTTTTTT+GGG | + | chr4.3:79222889-79222908 | MS.gene037669:intron | 5.0% |
| ACAGCCAAACTTGTCCCTGT+TGG | + | chr4.3:79224695-79224714 | MS.gene037669:intron | 50.0% | |
| ACGCAGTTACATCACTGGGT+AGG | + | chr4.3:79221601-79221620 | MS.gene037669:intron | 50.0% | |
| AGAAGAAGGCAGCTGAGGAA+CGG | + | chr4.3:79222133-79222152 | MS.gene037669:CDS | 50.0% | |
| ATCTGTCTCAGAGAATGGGC+CGG | - | chr4.3:79223000-79223019 | None:intergenic | 50.0% | |
| CACCGTGGAATCTTCTCTTG+TGG | + | chr4.3:79222011-79222030 | MS.gene037669:CDS | 50.0% | |
| CAGCCAAACTTGTCCCTGTT+GGG | + | chr4.3:79224696-79224715 | MS.gene037669:intron | 50.0% | |
| CAGTTGGAAGGGTTGTTCTG+GGG | + | chr4.3:79222370-79222389 | MS.gene037669:CDS | 50.0% | |
| CGTTCCATGCCAATTGCATC+TGG | + | chr4.3:79223360-79223379 | MS.gene037669:intron | 50.0% | |
| CTCACACGCAGTTACATCAC+TGG | + | chr4.3:79221596-79221615 | MS.gene037669:CDS | 50.0% | |
| CTCCGGATTCTACTATGACC+CGG | + | chr4.3:79223731-79223750 | MS.gene037669:intron | 50.0% | |
| GCCTTTGTGTCAGAAACTGG+AGG | - | chr4.3:79222057-79222076 | None:intergenic | 50.0% | |
| GCGTTCTGTGAGACATGCAA+AGG | - | chr4.3:79223426-79223445 | None:intergenic | 50.0% | |
| GCTGCCTTTGTGTCAGAAAC+TGG | - | chr4.3:79222060-79222079 | None:intergenic | 50.0% | |
| GGACGAAAGAGATGAGAGAG+AGG | - | chr4.3:79223080-79223099 | None:intergenic | 50.0% | |
| GTACCCAACAGGGACAAGTT+TGG | - | chr4.3:79224702-79224721 | None:intergenic | 50.0% | |
| GTGAGACATGCAAAGGATGC+TGG | + | chr4.3:79223278-79223297 | MS.gene037669:intron | 50.0% | |
| GTGAGACATGCAAAGGATGC+TGG | - | chr4.3:79223297-79223278 | None:intergenic | 50.0% | |
| TCTCACAGCACGCTTAGCAT+TGG | - | chr4.3:79223264-79223283 | None:intergenic | 50.0% | |
| TCTGTCACAAAGAATGGGCC+GGG | + | chr4.3:79223699-79223718 | MS.gene037669:intron | 50.0% | |
| TGTGTCAGAAACTGGAGGAG+TGG | - | chr4.3:79222052-79222071 | None:intergenic | 50.0% | |
| TTCTGACACAAAGGCAGCTG+AGG | + | chr4.3:79222062-79222081 | MS.gene037669:CDS | 50.0% | |
| ! | AATCCGGAGTGTTCAAGACC+CGG | - | chr4.3:79223720-79223739 | None:intergenic | 50.0% |
| ! | CACAAGTGAGACGAGTGTTG+TGG | - | chr4.3:79224506-79224525 | None:intergenic | 50.0% |
| ! | CTTTTTGCCGGATGCCTTCA+CGG | - | chr4.3:79222166-79222185 | None:intergenic | 50.0% |
| ! | GGAGCTTGCTTCTGCCTATA+AGG | + | chr4.3:79223199-79223218 | MS.gene037669:intron | 50.0% |
| !! | CTGTAGTGGTGTTTCTGGTG+AGG | + | chr4.3:79221978-79221997 | MS.gene037669:intron | 50.0% |
| !! | GATGCTGGCATTGATGCACA+AGG | + | chr4.3:79223293-79223312 | MS.gene037669:intron | 50.0% |
| GAAGAAGGCAGCTGAGGAAC+GGG | + | chr4.3:79222134-79222153 | MS.gene037669:CDS | 55.0% | |
| GCGTGCTGTGAGACATGCAA+AGG | + | chr4.3:79223271-79223290 | MS.gene037669:intron | 55.0% | |
| GGAAGAGAAGAAGGCAGCTG+AGG | + | chr4.3:79222128-79222147 | MS.gene037669:CDS | 55.0% | |
| GGCCGGGTCATAGTAGAATC+CGG | - | chr4.3:79223736-79223755 | None:intergenic | 55.0% | |
| TCTGTCTCAGAGAATGGGCC+GGG | - | chr4.3:79222999-79223018 | None:intergenic | 55.0% | |
| !! | GGTGTTTCTGGTGAGGGATC+TGG | + | chr4.3:79221985-79222004 | MS.gene037669:CDS | 55.0% |
| ! | GTGAGACGAGTGTTGTGGCG+CGG | - | chr4.3:79224501-79224520 | None:intergenic | 60.0% |
| !! | TGAGGGATCTGGTGTCACCG+TGG | + | chr4.3:79221996-79222015 | MS.gene037669:CDS | 60.0% |
| GGGCCGGGTCTTGAACACTC+CGG | + | chr4.3:79223714-79223733 | MS.gene037669:intron | 65.0% | |
| GGGCCGGGTCTTGAACACTC+TGG | - | chr4.3:79223733-79223714 | None:intergenic | 65.0% | |
| !! | GCAGCAGCCGTGAAGGCATC+CGG | + | chr4.3:79222156-79222175 | MS.gene037669:CDS | 65.0% |
| GGAACGGGCAGCAGCCGTGA+AGG | + | chr4.3:79222149-79222168 | MS.gene037669:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 79221533 | 79224868 | 79221533 | ID=MS.gene037669 |
| chr4.3 | mRNA | 79221533 | 79224868 | 79221533 | ID=MS.gene037669.t1;Parent=MS.gene037669 |
| chr4.3 | exon | 79221533 | 79221618 | 79221533 | ID=MS.gene037669.t1.exon1;Parent=MS.gene037669.t1 |
| chr4.3 | CDS | 79221533 | 79221618 | 79221533 | ID=cds.MS.gene037669.t1;Parent=MS.gene037669.t1 |
| chr4.3 | exon | 79221707 | 79221823 | 79221707 | ID=MS.gene037669.t1.exon2;Parent=MS.gene037669.t1 |
| chr4.3 | CDS | 79221707 | 79221823 | 79221707 | ID=cds.MS.gene037669.t1;Parent=MS.gene037669.t1 |
| chr4.3 | exon | 79221984 | 79222192 | 79221984 | ID=MS.gene037669.t1.exon3;Parent=MS.gene037669.t1 |
| chr4.3 | CDS | 79221984 | 79222192 | 79221984 | ID=cds.MS.gene037669.t1;Parent=MS.gene037669.t1 |
| chr4.3 | exon | 79222284 | 79222397 | 79222284 | ID=MS.gene037669.t1.exon4;Parent=MS.gene037669.t1 |
| chr4.3 | CDS | 79222284 | 79222397 | 79222284 | ID=cds.MS.gene037669.t1;Parent=MS.gene037669.t1 |
| chr4.3 | exon | 79224699 | 79224868 | 79224699 | ID=MS.gene037669.t1.exon5;Parent=MS.gene037669.t1 |
| chr4.3 | CDS | 79224699 | 79224868 | 79224699 | ID=cds.MS.gene037669.t1;Parent=MS.gene037669.t1 |
| Gene Sequence |
| Protein sequence |
