Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048096.t1 | RHN74026.1 | 98.3 | 233 | 3 | 1 | 1 | 232 | 1 | 233 | 3.30E-83 | 318.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048096.t1 | O81918 | 84.0 | 231 | 36 | 1 | 1 | 230 | 1 | 231 | 1.2e-65 | 251.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048096.t1 | A0A396J742 | 98.3 | 233 | 3 | 1 | 1 | 232 | 1 | 233 | 2.3e-83 | 318.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene041771 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene68663 | PPI |
MS.gene34006 | MS.gene048096 | PPI |
MS.gene016105 | MS.gene048096 | PPI |
MS.gene001097 | MS.gene048096 | PPI |
MS.gene016914 | MS.gene048096 | PPI |
MS.gene54763 | MS.gene048096 | PPI |
MS.gene47052 | MS.gene048096 | PPI |
MS.gene043773 | MS.gene048096 | PPI |
MS.gene041769 | MS.gene048096 | PPI |
MS.gene057052 | MS.gene048096 | PPI |
MS.gene036405 | MS.gene048096 | PPI |
MS.gene39764 | MS.gene048096 | PPI |
MS.gene058469 | MS.gene048096 | PPI |
MS.gene37588 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene73243 | PPI |
MS.gene005994 | MS.gene048096 | PPI |
MS.gene73243 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene041766 | PPI |
MS.gene47051 | MS.gene048096 | PPI |
MS.gene34008 | MS.gene048096 | PPI |
MS.gene005996 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene54761 | PPI |
MS.gene001098 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene92572 | PPI |
MS.gene81545 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene037669 | PPI |
MS.gene33103 | MS.gene048096 | PPI |
MS.gene074184 | MS.gene048096 | PPI |
MS.gene048096 | MS.gene074183 | PPI |
MS.gene006000 | MS.gene048096 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048096.t1 | MTR_4g019610 | 96.567 | 233 | 7 | 1 | 1 | 232 | 1 | 233 | 1.45e-162 | 449 |
MS.gene048096.t1 | MTR_2g461200 | 96.970 | 231 | 6 | 1 | 1 | 230 | 1 | 231 | 3.15e-161 | 446 |
MS.gene048096.t1 | MTR_2g461200 | 96.970 | 231 | 6 | 1 | 1 | 230 | 1 | 231 | 3.46e-161 | 445 |
MS.gene048096.t1 | MTR_4g019610 | 96.121 | 232 | 8 | 1 | 1 | 231 | 1 | 232 | 7.88e-160 | 443 |
MS.gene048096.t1 | MTR_2g461200 | 93.889 | 180 | 10 | 1 | 1 | 179 | 1 | 180 | 1.53e-95 | 277 |
MS.gene048096.t1 | MTR_5g088660 | 61.739 | 230 | 81 | 3 | 1 | 230 | 1 | 223 | 3.09e-81 | 242 |
MS.gene048096.t1 | MTR_5g088685 | 75.000 | 48 | 12 | 0 | 132 | 179 | 2 | 49 | 6.15e-18 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene048096.t1 | AT2G18110 | 79.386 | 228 | 45 | 2 | 5 | 230 | 4 | 231 | 4.80e-111 | 318 |
MS.gene048096.t1 | AT1G30230 | 77.391 | 230 | 50 | 2 | 5 | 232 | 4 | 233 | 5.12e-108 | 311 |
MS.gene048096.t1 | AT1G30230 | 77.193 | 228 | 50 | 2 | 5 | 230 | 4 | 231 | 3.47e-106 | 306 |
MS.gene048096.t1 | AT5G12110 | 62.174 | 230 | 85 | 2 | 1 | 230 | 1 | 228 | 3.20e-80 | 240 |
MS.gene048096.t1 | AT5G19510 | 61.304 | 230 | 83 | 2 | 1 | 230 | 1 | 224 | 7.48e-73 | 221 |
Find 59 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGTCTGTAGTGGTGTTTC+TGG | 0.150024 | 4.4:+81624322 | MS.gene048096:intron |
TTCAGTTGGAAGGGTTGTTC+TGG | 0.178098 | 4.4:+81624720 | MS.gene048096:CDS |
TCAGTTCCATCATATGAATA+TGG | 0.245099 | 4.4:+81624122 | MS.gene048096:CDS |
TCTTGTTTCCGTCGACAATA+TGG | 0.332439 | 4.4:+81627122 | MS.gene048096:CDS |
GCTGCCTTTGTGTCAGAAAC+TGG | 0.355924 | 4.4:-81624406 | None:intergenic |
TCAGTTGGAAGGGTTGTTCT+GGG | 0.356979 | 4.4:+81624721 | MS.gene048096:CDS |
TTCTTGATACCGTACCCAAC+AGG | 0.380470 | 4.4:-81627069 | None:intergenic |
TATAACCTTAAGGCTGAATC+TGG | 0.393170 | 4.4:+81623917 | MS.gene048096:CDS |
GAAGAAGGCAGCTGAGGAAC+GGG | 0.395604 | 4.4:+81624486 | MS.gene048096:CDS |
GATGACGATGTTGATTTGTT+TGG | 0.410866 | 4.4:+81624445 | MS.gene048096:CDS |
TCAAGCCAGATTCAGCCTTA+AGG | 0.411025 | 4.4:-81623922 | None:intergenic |
TCAAATTATGCTTACTATTG+TGG | 0.416944 | 4.4:+81627095 | MS.gene048096:CDS |
GGTGTTTCTGGTGAGGGATC+TGG | 0.436594 | 4.4:+81624334 | MS.gene048096:CDS |
GCAGCAGCCGTGAAGGCATC+CGG | 0.445711 | 4.4:+81624508 | MS.gene048096:CDS |
AGTCACATTCTATAACCTTA+AGG | 0.451347 | 4.4:+81623907 | MS.gene048096:CDS |
ACTCTGGACATACTCGTTGA+TGG | 0.453826 | 4.4:-81627169 | None:intergenic |
CAGTTCCATCATATGAATAT+GGG | 0.459928 | 4.4:+81624123 | MS.gene048096:CDS |
GTACCCAACAGGGACAAGTT+TGG | 0.474254 | 4.4:-81627058 | None:intergenic |
CAGCCAAACTTGTCCCTGTT+GGG | 0.476052 | 4.4:+81627055 | MS.gene048096:intron |
TTCCGTCGACAATATGGTTG+AGG | 0.490036 | 4.4:+81627128 | MS.gene048096:CDS |
TAATGTCATCCTTTGAAGCT+TGG | 0.497827 | 4.4:-81624079 | None:intergenic |
AGCAGTGAGATCTGTTCAGT+TGG | 0.499725 | 4.4:+81624706 | MS.gene048096:CDS |
ACATTCCCATATTCATATGA+TGG | 0.500557 | 4.4:-81624128 | None:intergenic |
GTGAGATCTGTTCAGTTGGA+AGG | 0.509565 | 4.4:+81624710 | MS.gene048096:CDS |
TGGAAAATCATCTGTACTGT+TGG | 0.509794 | 4.4:+81624637 | MS.gene048096:CDS |
AGAAGAAGGCAGCTGAGGAA+CGG | 0.514292 | 4.4:+81624485 | MS.gene048096:CDS |
TTCTTCGAGCTTCTTCATGT+CGG | 0.515820 | 4.4:-81624684 | None:intergenic |
TATTCATATGATGGAACTGA+TGG | 0.520528 | 4.4:-81624119 | None:intergenic |
AGAGACTGAGGAAGAGAAGA+AGG | 0.523236 | 4.4:+81624471 | MS.gene048096:CDS |
GTTTAGGTACCAAGCTTCAA+AGG | 0.531194 | 4.4:+81624070 | MS.gene048096:intron |
ATGTCGGTTTCATCATCCCA+TGG | 0.531275 | 4.4:-81624668 | None:intergenic |
TGTAGTGGTGTTTCTGGTGA+GGG | 0.534968 | 4.4:+81624328 | MS.gene048096:intron |
CTCACACGCAGTTACATCAC+TGG | 0.535094 | 4.4:+81623965 | MS.gene048096:CDS |
ACAGCCAAACTTGTCCCTGT+TGG | 0.544104 | 4.4:+81627054 | MS.gene048096:intron |
CTCTGGACATACTCGTTGAT+GGG | 0.546234 | 4.4:-81627168 | None:intergenic |
AAACTTGTCCCTGTTGGGTA+CGG | 0.548491 | 4.4:+81627060 | MS.gene048096:CDS |
CAGTTGGAAGGGTTGTTCTG+GGG | 0.550288 | 4.4:+81624722 | MS.gene048096:CDS |
TTCTGACACAAAGGCAGCTG+AGG | 0.553231 | 4.4:+81624411 | MS.gene048096:CDS |
TACTGTTGGATGTGAAGCCA+TGG | 0.557522 | 4.4:+81624651 | MS.gene048096:CDS |
GGAACGGGCAGCAGCCGTGA+AGG | 0.572363 | 4.4:+81624501 | MS.gene048096:CDS |
TGAGATCTGTTCAGTTGGAA+GGG | 0.572783 | 4.4:+81624711 | MS.gene048096:CDS |
CTGTAGTGGTGTTTCTGGTG+AGG | 0.577236 | 4.4:+81624327 | MS.gene048096:intron |
AGGCCACAATGTCACAACTC+TGG | 0.585892 | 4.4:-81627185 | None:intergenic |
ATCCTCAACCATATTGTCGA+CGG | 0.593242 | 4.4:-81627130 | None:intergenic |
CACCGTGGAATCTTCTCTTG+TGG | 0.597197 | 4.4:+81624360 | MS.gene048096:CDS |
ATGAATATGGGAATGTTGCT+AGG | 0.597917 | 4.4:+81624135 | MS.gene048096:CDS |
GGAAGAGAAGAAGGCAGCTG+AGG | 0.604357 | 4.4:+81624480 | MS.gene048096:CDS |
TGTGTCAGAAACTGGAGGAG+TGG | 0.624152 | 4.4:-81624398 | None:intergenic |
TCCTCCAGTTTCTGACACAA+AGG | 0.631021 | 4.4:+81624402 | MS.gene048096:CDS |
GCCTTTGTGTCAGAAACTGG+AGG | 0.631902 | 4.4:-81624403 | None:intergenic |
TCACACGCAGTTACATCACT+GGG | 0.638579 | 4.4:+81623966 | MS.gene048096:CDS |
TGTCCAGAGTTGTGACATTG+TGG | 0.639251 | 4.4:+81627182 | MS.gene048096:CDS |
TGATGTAACTGCGTGTGAGA+AGG | 0.646574 | 4.4:-81623961 | None:intergenic |
AGCCACAAGAGAAGATTCCA+CGG | 0.646775 | 4.4:-81624362 | None:intergenic |
ACTGTTGGATGTGAAGCCAT+GGG | 0.650142 | 4.4:+81624652 | MS.gene048096:CDS |
TCTTGATACCGTACCCAACA+GGG | 0.655761 | 4.4:-81627068 | None:intergenic |
TTTGTTTGGTGAAGAGACTG+AGG | 0.673347 | 4.4:+81624459 | MS.gene048096:CDS |
TGAGGGATCTGGTGTCACCG+TGG | 0.761218 | 4.4:+81624345 | MS.gene048096:CDS |
AATATGGGAATGTTGCTAGG+TGG | 0.778608 | 4.4:+81624138 | MS.gene048096:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTAATCTAAATAATAAAAAA+AGG | + | chr4.4:81626222-81626241 | MS.gene048096:intron | 10.0% |
!! | CTAATCTAAATAATAAAAAA+AGG | - | chr4.4:81626241-81626222 | None:intergenic | 10.0% |
!!! | TGTAAATTAACATTTTTTTT+AGG | - | chr4.4:81626178-81626197 | None:intergenic | 10.0% |
!!! | TGTAAATTAACTTTTTTTTT+GGG | + | chr4.4:81625238-81625257 | MS.gene048096:intron | 10.0% |
!!! | TTGTAAATTAACTTTTTTTT+TGG | + | chr4.4:81625237-81625256 | MS.gene048096:intron | 10.0% |
!! | AAAAATAAAAGGGATAAAAA+AGG | + | chr4.4:81626120-81626139 | MS.gene048096:intron | 15.0% |
!! | ACAAAAAAAAAGGATAAAAA+AGG | - | chr4.4:81625275-81625294 | None:intergenic | 15.0% |
!! | ATCTAAATAATAAAAAAAGG+AGG | + | chr4.4:81626225-81626244 | MS.gene048096:intron | 15.0% |
!! | ATCTAAATAATAAAAAAAGG+AGG | - | chr4.4:81626244-81626225 | None:intergenic | 15.0% |
!! | TAATTCAAATGAATTGTATT+CGG | + | chr4.4:81624262-81624281 | MS.gene048096:intron | 15.0% |
!! | TCTAATTAATTTACAAAGAT+TGG | - | chr4.4:81624209-81624228 | None:intergenic | 15.0% |
!!! | ATTGAAAAACAGTAATTTTA+TGG | - | chr4.4:81626884-81626903 | None:intergenic | 15.0% |
!!! | TATAATAAAGATTTTGTTTG+CGG | + | chr4.4:81624232-81624251 | MS.gene048096:intron | 15.0% |
!!! | TGTTTTTATTTGATTTGTTT+AGG | + | chr4.4:81624054-81624073 | MS.gene048096:intron | 15.0% |
!!! | TTGCTATTACAAAAATAAAA+GGG | + | chr4.4:81626110-81626129 | MS.gene048096:intron | 15.0% |
!! | AAAAACAGAGATGAAAATAA+AGG | + | chr4.4:81626596-81626615 | MS.gene048096:intron | 20.0% |
!! | AAACTTGAACAATTTCAATA+AGG | + | chr4.4:81625525-81625544 | MS.gene048096:intron | 20.0% |
!! | AATAATAAAAAAAGGAGGAA+TGG | + | chr4.4:81626230-81626249 | MS.gene048096:intron | 20.0% |
!! | AATTCTAACCCAAAAAAAAT+TGG | + | chr4.4:81626146-81626165 | MS.gene048096:intron | 20.0% |
!! | CATATAAAATTGTAGCAAAA+GGG | + | chr4.4:81626486-81626505 | MS.gene048096:intron | 20.0% |
!! | TAATTTACAAAGATTGGAAT+GGG | - | chr4.4:81624203-81624222 | None:intergenic | 20.0% |
!! | TGGATAAAAAATTAGACTAT+TGG | - | chr4.4:81624997-81625016 | None:intergenic | 20.0% |
!! | TTAATTTACAAAGATTGGAA+TGG | - | chr4.4:81624204-81624223 | None:intergenic | 20.0% |
!!! | AAAGTTTGTTTTCACTATTT+TGG | - | chr4.4:81625017-81625036 | None:intergenic | 20.0% |
!!! | ACTTGCTATTACAAAAAAAA+AGG | - | chr4.4:81625285-81625304 | None:intergenic | 20.0% |
!!! | CTTGCTATTACAAAAATAAA+AGG | + | chr4.4:81626109-81626128 | MS.gene048096:intron | 20.0% |
!!! | TTTTATAAATGCCATTTAGT+TGG | - | chr4.4:81626432-81626451 | None:intergenic | 20.0% |
! | AAACTTGCACAATTTCAATA+AGG | - | chr4.4:81625866-81625885 | None:intergenic | 25.0% |
! | AATAGACGAAAAGATAAGAA+CGG | - | chr4.4:81624773-81624792 | None:intergenic | 25.0% |
! | ATAATAAAAAAAGGAGGATG+AGG | - | chr4.4:81625185-81625204 | None:intergenic | 25.0% |
! | ATGAAAATAAAGGAGAAAGA+AGG | + | chr4.4:81626606-81626625 | MS.gene048096:intron | 25.0% |
! | CCATATAAAATTGTAGCAAA+AGG | + | chr4.4:81626485-81626504 | MS.gene048096:intron | 25.0% |
! | TCAAATTATGCTTACTATTG+TGG | + | chr4.4:81627095-81627114 | MS.gene048096:CDS | 25.0% |
! | TGTTGTATACTATTCTTCAA+GGG | + | chr4.4:81624877-81624896 | MS.gene048096:intron | 25.0% |
! | TTGATTTCCATTGAAAAACT+CGG | + | chr4.4:81626519-81626538 | MS.gene048096:intron | 25.0% |
! | TTGTTGTATACTATTCTTCA+AGG | + | chr4.4:81624876-81624895 | MS.gene048096:intron | 25.0% |
!! | CCTTTTGCTACAATTTTATA+TGG | - | chr4.4:81626488-81626507 | None:intergenic | 25.0% |
!! | TTACTTACAGATTTTGTTGA+AGG | - | chr4.4:81627208-81627227 | None:intergenic | 25.0% |
!! | TTTTGTAATAGCAAGTACAT+GGG | + | chr4.4:81625289-81625308 | MS.gene048096:intron | 25.0% |
!! | TTTTGTAATAGCAAGTACAT+GGG | - | chr4.4:81625308-81625289 | None:intergenic | 25.0% |
!! | TTTTTGTAATAGCAAGTACA+TGG | + | chr4.4:81625288-81625307 | MS.gene048096:intron | 25.0% |
!! | TTTTTGTAATAGCAAGTACA+TGG | - | chr4.4:81625307-81625288 | None:intergenic | 25.0% |
!!! | ACTCATAATTTGTTGAAATC+TGG | + | chr4.4:81624567-81624586 | MS.gene048096:intron | 25.0% |
!!! | AGGATGATACCAATTTTTTT+TGG | - | chr4.4:81626158-81626177 | None:intergenic | 25.0% |
!!! | ATAATTTGTTGAAATCTGGT+TGG | + | chr4.4:81624571-81624590 | MS.gene048096:intron | 25.0% |
!!! | GGATGATACCAATTTTTTTT+GGG | - | chr4.4:81626157-81626176 | None:intergenic | 25.0% |
!!! | TATGATTTTTGGTTCTTCAT+AGG | + | chr4.4:81623994-81624013 | MS.gene048096:intron | 25.0% |
!!! | TTTTAATTTTGTGTCTGTAG+TGG | + | chr4.4:81624313-81624332 | MS.gene048096:intron | 25.0% |
ACATTCCCATATTCATATGA+TGG | - | chr4.4:81624131-81624150 | None:intergenic | 30.0% | |
AGAAGAAAGAAACACAAAAG+AGG | - | chr4.4:81625086-81625105 | None:intergenic | 30.0% | |
AGTCACATTCTATAACCTTA+AGG | + | chr4.4:81623907-81623926 | MS.gene048096:CDS | 30.0% | |
CACGTAAAAATGTTGTAGAA+GGG | + | chr4.4:81626387-81626406 | MS.gene048096:intron | 30.0% | |
CAGTTCCATCATATGAATAT+GGG | + | chr4.4:81624123-81624142 | MS.gene048096:CDS | 30.0% | |
GAAGAAAGAAACACAAAAGA+GGG | - | chr4.4:81625085-81625104 | None:intergenic | 30.0% | |
GTTAACTTCAAAAGGAGTTT+GGG | + | chr4.4:81625502-81625521 | MS.gene048096:intron | 30.0% | |
GTTAACTTCAAAAGGAGTTT+GGG | - | chr4.4:81625521-81625502 | None:intergenic | 30.0% | |
TCAGTTCCATCATATGAATA+TGG | + | chr4.4:81624122-81624141 | MS.gene048096:CDS | 30.0% | |
TTTGATCTGTCTCAAAGAAT+GGG | + | chr4.4:81626041-81626060 | MS.gene048096:intron | 30.0% | |
! | CTTACTTTCTTTCTTTTTGC+CGG | - | chr4.4:81624530-81624549 | None:intergenic | 30.0% |
! | TATTCATATGATGGAACTGA+TGG | - | chr4.4:81624122-81624141 | None:intergenic | 30.0% |
! | TTTTGATCTGTCTCAAAGAA+TGG | + | chr4.4:81626040-81626059 | MS.gene048096:intron | 30.0% |
!! | AGCAAATCCTATTTCTTTTC+TGG | + | chr4.4:81625816-81625835 | MS.gene048096:intron | 30.0% |
!! | TTTGATTTGTCTCAGAGAAT+GGG | - | chr4.4:81625352-81625371 | None:intergenic | 30.0% |
!!! | CCTTTTGAAGTTAACCATTT+CGG | + | chr4.4:81625894-81625913 | MS.gene048096:intron | 30.0% |
!!! | TTTTGATTTGTCTCAGAGAA+TGG | - | chr4.4:81625353-81625372 | None:intergenic | 30.0% |
AAAAAAAGGAGGATGAGGTT+GGG | - | chr4.4:81625180-81625199 | None:intergenic | 35.0% | |
AAAGAAACACAAAAGAGGGA+GGG | - | chr4.4:81625081-81625100 | None:intergenic | 35.0% | |
AAGAAGGATAGATCCAAATC+AGG | + | chr4.4:81626622-81626641 | MS.gene048096:intron | 35.0% | |
AAGAGATGAAAGAGAGGATT+AGG | - | chr4.4:81625470-81625489 | None:intergenic | 35.0% | |
AAGGCAACCAGAAAAGAAAT+AGG | + | chr4.4:81625565-81625584 | MS.gene048096:intron | 35.0% | |
AGAAGAAAGAAACACAGAGA+GGG | + | chr4.4:81626800-81626819 | MS.gene048096:intron | 35.0% | |
AGAGATGAAAGAGAGGATTA+GGG | - | chr4.4:81625469-81625488 | None:intergenic | 35.0% | |
ATAGGGAGAAGAGTTTATCA+TGG | + | chr4.4:81626741-81626760 | MS.gene048096:intron | 35.0% | |
ATAGGGAGAAGAGTTTATCA+TGG | - | chr4.4:81626760-81626741 | None:intergenic | 35.0% | |
ATGAATATGGGAATGTTGCT+AGG | + | chr4.4:81624135-81624154 | MS.gene048096:CDS | 35.0% | |
CCACGTAAAAATGTTGTAGA+AGG | + | chr4.4:81626386-81626405 | MS.gene048096:intron | 35.0% | |
CCGAAATGGTTAACTTCAAA+AGG | - | chr4.4:81625897-81625916 | None:intergenic | 35.0% | |
CTATCGGAAAACAACCATTA+TGG | - | chr4.4:81626661-81626680 | None:intergenic | 35.0% | |
GAAGAGTTTATCATGGTTGT+TGG | + | chr4.4:81626748-81626767 | MS.gene048096:intron | 35.0% | |
GAAGAGTTTATCATGGTTGT+TGG | - | chr4.4:81626767-81626748 | None:intergenic | 35.0% | |
GAGAGATTTGTGTGTGAATA+GGG | + | chr4.4:81626724-81626743 | MS.gene048096:intron | 35.0% | |
GAGAGATTTGTGTGTGAATA+GGG | - | chr4.4:81626743-81626724 | None:intergenic | 35.0% | |
GGTTAACTTCAAAAGGAGTT+TGG | + | chr4.4:81625501-81625520 | MS.gene048096:intron | 35.0% | |
GGTTAACTTCAAAAGGAGTT+TGG | - | chr4.4:81625520-81625501 | None:intergenic | 35.0% | |
TAAAAAAAGGAGGATGAGGT+TGG | - | chr4.4:81625181-81625200 | None:intergenic | 35.0% | |
TATAACCTTAAGGCTGAATC+TGG | + | chr4.4:81623917-81623936 | MS.gene048096:CDS | 35.0% | |
TCTGGTTGGACATCAATTTA+TGG | + | chr4.4:81624585-81624604 | MS.gene048096:intron | 35.0% | |
TGAGAGATTTGTGTGTGAAT+AGG | + | chr4.4:81626723-81626742 | MS.gene048096:intron | 35.0% | |
TGAGAGATTTGTGTGTGAAT+AGG | - | chr4.4:81626742-81626723 | None:intergenic | 35.0% | |
TGGAAAATCATCTGTACTGT+TGG | + | chr4.4:81624637-81624656 | MS.gene048096:CDS | 35.0% | |
TGGATCAAGTGAGATATGAT+GGG | - | chr4.4:81624977-81624996 | None:intergenic | 35.0% | |
TTGGATCAAGTGAGATATGA+TGG | - | chr4.4:81624978-81624997 | None:intergenic | 35.0% | |
! | AAGAGATGAGAGAAAGTATG+AGG | - | chr4.4:81625421-81625440 | None:intergenic | 35.0% |
! | ACATTTTTACGTGGTCGTTT+TGG | - | chr4.4:81626380-81626399 | None:intergenic | 35.0% |
! | ACCTAGTCATTTAGAATCAG+CGG | + | chr4.4:81625375-81625394 | MS.gene048096:intron | 35.0% |
! | ACTGGGTAGGTTATGATTTT+TGG | + | chr4.4:81623983-81624002 | MS.gene048096:intron | 35.0% |
! | AGATGATTTTCCACCTAGAA+TGG | - | chr4.4:81624630-81624649 | None:intergenic | 35.0% |
! | CCATAGTCATTTAAGATCAG+CGG | - | chr4.4:81626016-81626035 | None:intergenic | 35.0% |
! | CCTTCTACAACATTTTTACG+TGG | - | chr4.4:81626389-81626408 | None:intergenic | 35.0% |
!! | ACAAGTTTGTTTTCCCCTAT+TGG | + | chr4.4:81624938-81624957 | MS.gene048096:intron | 35.0% |
!! | ACTAGATCCGAGTTTTTCAA+TGG | - | chr4.4:81626529-81626548 | None:intergenic | 35.0% |
!! | AGCAGATCCTATTTCTTTTC+TGG | - | chr4.4:81625575-81625594 | None:intergenic | 35.0% |
!! | CAAGTTTGTTTTCCCCTATT+GGG | + | chr4.4:81624939-81624958 | MS.gene048096:intron | 35.0% |
!! | CATAATGGTTGTTTTCCGAT+AGG | + | chr4.4:81626659-81626678 | MS.gene048096:intron | 35.0% |
!! | GATGACGATGTTGATTTGTT+TGG | + | chr4.4:81624445-81624464 | MS.gene048096:CDS | 35.0% |
!! | GTTGTTTGATTTGTGACATG+AGG | + | chr4.4:81626689-81626708 | MS.gene048096:intron | 35.0% |
!! | TAATGTCATCCTTTGAAGCT+TGG | - | chr4.4:81624082-81624101 | None:intergenic | 35.0% |
!! | TTGATTTGTGACATGAGGTT+GGG | + | chr4.4:81626694-81626713 | MS.gene048096:intron | 35.0% |
!! | TTTGATTTGTGACATGAGGT+TGG | + | chr4.4:81626693-81626712 | MS.gene048096:intron | 35.0% |
!!! | CCTTTTGAAGTTAACCACTT+CGG | - | chr4.4:81625497-81625516 | None:intergenic | 35.0% |
!!! | GGTTTTGATTGGATCAGTTA+TGG | - | chr4.4:81625448-81625467 | None:intergenic | 35.0% |
!!! | TTCTTTTCTGGTTGCCTTAT+AGG | - | chr4.4:81625563-81625582 | None:intergenic | 35.0% |
!!! | TTTTCTGCTGATTCCATTCT+AGG | + | chr4.4:81624614-81624633 | MS.gene048096:intron | 35.0% |
AAGAGATGAGAGTGAGGATT+AGG | + | chr4.4:81625921-81625940 | MS.gene048096:intron | 40.0% | |
AAGAGATGAGATAGGGTATG+AGG | + | chr4.4:81625970-81625989 | MS.gene048096:intron | 40.0% | |
AAGGCAGCCAGAAAAGAAAT+AGG | - | chr4.4:81625826-81625845 | None:intergenic | 40.0% | |
AATATGGGAATGTTGCTAGG+TGG | + | chr4.4:81624138-81624157 | MS.gene048096:CDS | 40.0% | |
ACAGATCTGTGCCAACTAAA+TGG | + | chr4.4:81626418-81626437 | MS.gene048096:intron | 40.0% | |
ACTTGAGATTGACCCAATAG+GGG | - | chr4.4:81624954-81624973 | None:intergenic | 40.0% | |
AGAGATGAGAGTGAGGATTA+GGG | + | chr4.4:81625922-81625941 | MS.gene048096:intron | 40.0% | |
ATCCTCAACCATATTGTCGA+CGG | - | chr4.4:81627133-81627152 | None:intergenic | 40.0% | |
ATGGACGAAAGAGATGAGAT+AGG | + | chr4.4:81625962-81625981 | MS.gene048096:intron | 40.0% | |
CAAACAACACCACAACCTAT+CGG | - | chr4.4:81626677-81626696 | None:intergenic | 40.0% | |
CATTGATGCACAAGGATTTG+GGG | + | chr4.4:81625648-81625667 | MS.gene048096:intron | 40.0% | |
CATTGATGCACAAGGATTTG+GGG | - | chr4.4:81625667-81625648 | None:intergenic | 40.0% | |
CCGAAGTGGTTAACTTCAAA+AGG | + | chr4.4:81625494-81625513 | MS.gene048096:intron | 40.0% | |
CCGCTGATCTTAAATGACTA+TGG | + | chr4.4:81626013-81626032 | MS.gene048096:intron | 40.0% | |
CTCCATATTCTACTATGACC+CGG | - | chr4.4:81625315-81625334 | None:intergenic | 40.0% | |
GAAAGAAACACAAAAGAGGG+AGG | - | chr4.4:81625082-81625101 | None:intergenic | 40.0% | |
GACTTGAGATTGACCCAATA+GGG | - | chr4.4:81624955-81624974 | None:intergenic | 40.0% | |
GAGAAGAAAGAAACACAGAG+AGG | + | chr4.4:81626799-81626818 | MS.gene048096:intron | 40.0% | |
GAGTTTATCATGGTTGTTGG+AGG | + | chr4.4:81626751-81626770 | MS.gene048096:intron | 40.0% | |
GAGTTTATCATGGTTGTTGG+AGG | - | chr4.4:81626770-81626751 | None:intergenic | 40.0% | |
GGTTTCGATTGGATCAGTTA+TGG | + | chr4.4:81625943-81625962 | MS.gene048096:intron | 40.0% | |
GTAATAGCAAGTACATGGGT+CGG | - | chr4.4:81626100-81626119 | None:intergenic | 40.0% | |
GTTTAGGTACCAAGCTTCAA+AGG | + | chr4.4:81624070-81624089 | MS.gene048096:intron | 40.0% | |
TAATAGCAAGTACATGGGTC+GGG | - | chr4.4:81626099-81626118 | None:intergenic | 40.0% | |
TCTCTGCAATACGAAGACTA+AGG | - | chr4.4:81626945-81626964 | None:intergenic | 40.0% | |
TGAGATCTGTTCAGTTGGAA+GGG | + | chr4.4:81624711-81624730 | MS.gene048096:CDS | 40.0% | |
TGGACGAAAGAGATGAGATA+GGG | + | chr4.4:81625963-81625982 | MS.gene048096:intron | 40.0% | |
TTCTTCGAGCTTCTTCATGT+CGG | - | chr4.4:81624687-81624706 | None:intergenic | 40.0% | |
! | AATATGGAGTGTTCAAGACC+CGG | + | chr4.4:81625326-81625345 | MS.gene048096:intron | 40.0% |
! | CTGGTGCACAAATAAGCTTT+TGG | + | chr4.4:81624905-81624924 | MS.gene048096:intron | 40.0% |
! | GCATTGATGCACAAGGATTT+GGG | + | chr4.4:81625647-81625666 | MS.gene048096:intron | 40.0% |
! | GCATTGATGCACAAGGATTT+GGG | - | chr4.4:81625666-81625647 | None:intergenic | 40.0% |
! | TCTTGTTTCCGTCGACAATA+TGG | + | chr4.4:81627122-81627141 | MS.gene048096:CDS | 40.0% |
! | TTTGTTTGGTGAAGAGACTG+AGG | + | chr4.4:81624459-81624478 | MS.gene048096:CDS | 40.0% |
!! | ACCGCTGATTCTAAATGACT+AGG | - | chr4.4:81625379-81625398 | None:intergenic | 40.0% |
!! | GAGAGGATTAGGGTTTTGAT+TGG | - | chr4.4:81625459-81625478 | None:intergenic | 40.0% |
!! | GTTGTTGGAGGATTTGTTGT+TGG | + | chr4.4:81626763-81626782 | MS.gene048096:intron | 40.0% |
!!! | TTCTTTTCTGGCTGCCTTAT+AGG | + | chr4.4:81625828-81625847 | MS.gene048096:intron | 40.0% |
AAACTTGTCCCTGTTGGGTA+CGG | + | chr4.4:81627060-81627079 | MS.gene048096:CDS | 45.0% | |
ACTCTGGACATACTCGTTGA+TGG | - | chr4.4:81627172-81627191 | None:intergenic | 45.0% | |
ACTGTTGGATGTGAAGCCAT+GGG | + | chr4.4:81624652-81624671 | MS.gene048096:CDS | 45.0% | |
AGAAAGAAACACAGAGAGGG+AGG | + | chr4.4:81626803-81626822 | MS.gene048096:intron | 45.0% | |
AGAGACACACTCTCCTGATT+TGG | - | chr4.4:81626638-81626657 | None:intergenic | 45.0% | |
AGAGACTGAGGAAGAGAAGA+AGG | + | chr4.4:81624471-81624490 | MS.gene048096:CDS | 45.0% | |
AGATGCAGTTGGGTATGCAA+CGG | + | chr4.4:81625683-81625702 | MS.gene048096:intron | 45.0% | |
AGCAGTGAGATCTGTTCAGT+TGG | + | chr4.4:81624706-81624725 | MS.gene048096:CDS | 45.0% | |
AGCCACAAGAGAAGATTCCA+CGG | - | chr4.4:81624365-81624384 | None:intergenic | 45.0% | |
ATCTGTCTCAAAGAATGGGC+CGG | + | chr4.4:81626045-81626064 | MS.gene048096:intron | 45.0% | |
ATTTGTCTCAGAGAATGGGC+CGG | - | chr4.4:81625348-81625367 | None:intergenic | 45.0% | |
CTCATCTCTTTCGTCCGAAA+TGG | - | chr4.4:81625911-81625930 | None:intergenic | 45.0% | |
CTCTGGACATACTCGTTGAT+GGG | - | chr4.4:81627171-81627190 | None:intergenic | 45.0% | |
GAAAGAAACACAGAGAGGGA+GGG | + | chr4.4:81626804-81626823 | MS.gene048096:intron | 45.0% | |
GGACGAAAGAGATGAAAGAG+AGG | - | chr4.4:81625476-81625495 | None:intergenic | 45.0% | |
GGACTTGAGATTGACCCAAT+AGG | - | chr4.4:81624956-81624975 | None:intergenic | 45.0% | |
GTAATAGCAAGTACATGGGC+CGG | + | chr4.4:81625293-81625312 | MS.gene048096:intron | 45.0% | |
GTGAGATCTGTTCAGTTGGA+AGG | + | chr4.4:81624710-81624729 | MS.gene048096:CDS | 45.0% | |
GTGAGGATTAGGGTTTCGAT+TGG | + | chr4.4:81625932-81625951 | MS.gene048096:intron | 45.0% | |
TAATAGCAAGTACATGGGCC+GGG | + | chr4.4:81625294-81625313 | MS.gene048096:intron | 45.0% | |
TACTGTTGGATGTGAAGCCA+TGG | + | chr4.4:81624651-81624670 | MS.gene048096:CDS | 45.0% | |
TCAAGCCAGATTCAGCCTTA+AGG | - | chr4.4:81623925-81623944 | None:intergenic | 45.0% | |
TCACACGCAGTTACATCACT+GGG | + | chr4.4:81623966-81623985 | MS.gene048096:CDS | 45.0% | |
TCAGTTGGAAGGGTTGTTCT+GGG | + | chr4.4:81624721-81624740 | MS.gene048096:CDS | 45.0% | |
TCCTCCAGTTTCTGACACAA+AGG | + | chr4.4:81624402-81624421 | MS.gene048096:CDS | 45.0% | |
TCTTGATACCGTACCCAACA+GGG | - | chr4.4:81627071-81627090 | None:intergenic | 45.0% | |
TGATGTAACTGCGTGTGAGA+AGG | - | chr4.4:81623964-81623983 | None:intergenic | 45.0% | |
TGTCCAGAGTTGTGACATTG+TGG | + | chr4.4:81627182-81627201 | MS.gene048096:CDS | 45.0% | |
TGTGTCTGTAGTGGTGTTTC+TGG | + | chr4.4:81624322-81624341 | MS.gene048096:intron | 45.0% | |
TTCAGTTGGAAGGGTTGTTC+TGG | + | chr4.4:81624720-81624739 | MS.gene048096:CDS | 45.0% | |
TTCATCTCTTTCGTCCGAAG+TGG | + | chr4.4:81625480-81625499 | MS.gene048096:intron | 45.0% | |
TTCCGTCGACAATATGGTTG+AGG | + | chr4.4:81627128-81627147 | MS.gene048096:CDS | 45.0% | |
TTCTTGATACCGTACCCAAC+AGG | - | chr4.4:81627072-81627091 | None:intergenic | 45.0% | |
TTGCAGCAGTAGATGCAGTT+GGG | + | chr4.4:81625673-81625692 | MS.gene048096:intron | 45.0% | |
TTTGCAACACCAGATGCAGT+TGG | - | chr4.4:81625719-81625738 | None:intergenic | 45.0% | |
TTTGCAGCAGTAGATGCAGT+TGG | + | chr4.4:81625672-81625691 | MS.gene048096:intron | 45.0% | |
! | CTATTCTTCAAGGGCATGTC+TGG | + | chr4.4:81624886-81624905 | MS.gene048096:intron | 45.0% |
! | GAGAGTGTGTCTCTCCATAA+TGG | + | chr4.4:81626644-81626663 | MS.gene048096:intron | 45.0% |
!! | ATGTCGGTTTCATCATCCCA+TGG | - | chr4.4:81624671-81624690 | None:intergenic | 45.0% |
!! | GGCATTGATGCACAAGGATT+TGG | + | chr4.4:81625646-81625665 | MS.gene048096:intron | 45.0% |
!! | GGCATTGATGCACAAGGATT+TGG | - | chr4.4:81625665-81625646 | None:intergenic | 45.0% |
!! | GGTTGTTTTCCGATAGGTTG+TGG | + | chr4.4:81626665-81626684 | MS.gene048096:intron | 45.0% |
!! | TCTGCTGATTCCATTCTAGG+TGG | + | chr4.4:81624617-81624636 | MS.gene048096:intron | 45.0% |
!! | TGTAGTGGTGTTTCTGGTGA+GGG | + | chr4.4:81624328-81624347 | MS.gene048096:intron | 45.0% |
AACACCAGATGCAGTTGGCA+TGG | - | chr4.4:81625714-81625733 | None:intergenic | 50.0% | |
ACAGCCAAACTTGTCCCTGT+TGG | + | chr4.4:81627054-81627073 | MS.gene048096:intron | 50.0% | |
ACGCAGTTACATCACTGGGT+AGG | + | chr4.4:81623970-81623989 | MS.gene048096:intron | 50.0% | |
AGAAGAAGGCAGCTGAGGAA+CGG | + | chr4.4:81624485-81624504 | MS.gene048096:CDS | 50.0% | |
AGGCCACAATGTCACAACTC+TGG | - | chr4.4:81627188-81627207 | None:intergenic | 50.0% | |
CACCGTGGAATCTTCTCTTG+TGG | + | chr4.4:81624360-81624379 | MS.gene048096:CDS | 50.0% | |
CAGCCAAACTTGTCCCTGTT+GGG | + | chr4.4:81627055-81627074 | MS.gene048096:intron | 50.0% | |
CAGTTGGAAGGGTTGTTCTG+GGG | + | chr4.4:81624722-81624741 | MS.gene048096:CDS | 50.0% | |
CTCACACGCAGTTACATCAC+TGG | + | chr4.4:81623965-81623984 | MS.gene048096:CDS | 50.0% | |
GCCTTTGTGTCAGAAACTGG+AGG | - | chr4.4:81624406-81624425 | None:intergenic | 50.0% | |
GCTGCCTTTGTGTCAGAAAC+TGG | - | chr4.4:81624409-81624428 | None:intergenic | 50.0% | |
GGACGAAAGAGATGAGAGTG+AGG | + | chr4.4:81625915-81625934 | MS.gene048096:intron | 50.0% | |
GGCCGGGTCATAGTAGAATA+TGG | + | chr4.4:81625310-81625329 | MS.gene048096:intron | 50.0% | |
GGTCGGGTCATAGTAGAATC+CGG | - | chr4.4:81626083-81626102 | None:intergenic | 50.0% | |
GTACCCAACAGGGACAAGTT+TGG | - | chr4.4:81627061-81627080 | None:intergenic | 50.0% | |
GTGAGACATGCAAAGGATGC+TGG | + | chr4.4:81625625-81625644 | MS.gene048096:intron | 50.0% | |
GTGAGACATGCAAAGGATGC+TGG | - | chr4.4:81625644-81625625 | None:intergenic | 50.0% | |
TCTCACAGCACGCTTAGCAT+TGG | + | chr4.4:81625780-81625799 | MS.gene048096:intron | 50.0% | |
TCTCACAGCACGCTTAGCAT+TGG | - | chr4.4:81625799-81625780 | None:intergenic | 50.0% | |
TCTGTCTCAAAGAATGGGCC+GGG | + | chr4.4:81626046-81626065 | MS.gene048096:intron | 50.0% | |
TGTGTCAGAAACTGGAGGAG+TGG | - | chr4.4:81624401-81624420 | None:intergenic | 50.0% | |
TTCTGACACAAAGGCAGCTG+AGG | + | chr4.4:81624411-81624430 | MS.gene048096:CDS | 50.0% | |
TTTGTCTCAGAGAATGGGCC+GGG | - | chr4.4:81625347-81625366 | None:intergenic | 50.0% | |
! | AATCCGGAGTGTTCAAGACC+CGG | - | chr4.4:81626067-81626086 | None:intergenic | 50.0% |
! | CACAAGTGAGACGAGTGTTG+TGG | - | chr4.4:81626859-81626878 | None:intergenic | 50.0% |
! | CTTTTTGCCGGATGCCTTCA+CGG | - | chr4.4:81624518-81624537 | None:intergenic | 50.0% |
! | GGAGCTTGCTTCTGCCTATA+AGG | + | chr4.4:81625546-81625565 | MS.gene048096:intron | 50.0% |
! | GGAGCTTGCTTCTGCCTATA+AGG | - | chr4.4:81625565-81625546 | None:intergenic | 50.0% |
!! | CTGTAGTGGTGTTTCTGGTG+AGG | + | chr4.4:81624327-81624346 | MS.gene048096:intron | 50.0% |
!! | GATGCTGGCATTGATGCACA+AGG | + | chr4.4:81625640-81625659 | MS.gene048096:intron | 50.0% |
!! | GATGCTGGCATTGATGCACA+AGG | - | chr4.4:81625659-81625640 | None:intergenic | 50.0% |
CGTTCCATGCCAACTGCATC+TGG | + | chr4.4:81625707-81625726 | MS.gene048096:intron | 55.0% | |
GAAGAAGGCAGCTGAGGAAC+GGG | + | chr4.4:81624486-81624505 | MS.gene048096:CDS | 55.0% | |
GCGTGCTGTGAGACATGCAA+AGG | + | chr4.4:81625618-81625637 | MS.gene048096:intron | 55.0% | |
GCGTGCTGTGAGACATGCAA+AGG | - | chr4.4:81625637-81625618 | None:intergenic | 55.0% | |
GGAAGAGAAGAAGGCAGCTG+AGG | + | chr4.4:81624480-81624499 | MS.gene048096:CDS | 55.0% | |
!! | GGTGTTTCTGGTGAGGGATC+TGG | + | chr4.4:81624334-81624353 | MS.gene048096:CDS | 55.0% |
! | GTGAGACGAGTGTTGTGGCG+CGG | - | chr4.4:81626854-81626873 | None:intergenic | 60.0% |
!! | TGAGGGATCTGGTGTCACCG+TGG | + | chr4.4:81624345-81624364 | MS.gene048096:CDS | 60.0% |
GGGCCGGGTCTTGAACACTC+CGG | + | chr4.4:81626061-81626080 | MS.gene048096:intron | 65.0% | |
!! | GCAGCAGCCGTGAAGGCATC+CGG | + | chr4.4:81624508-81624527 | MS.gene048096:CDS | 65.0% |
GGAACGGGCAGCAGCCGTGA+AGG | + | chr4.4:81624501-81624520 | MS.gene048096:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.4 | gene | 81623902 | 81627227 | 81623902 | ID=MS.gene048096 |
chr4.4 | mRNA | 81623902 | 81627227 | 81623902 | ID=MS.gene048096.t1;Parent=MS.gene048096 |
chr4.4 | exon | 81623902 | 81623987 | 81623902 | ID=MS.gene048096.t1.exon1;Parent=MS.gene048096.t1 |
chr4.4 | CDS | 81623902 | 81623987 | 81623902 | ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1 |
chr4.4 | exon | 81624076 | 81624192 | 81624076 | ID=MS.gene048096.t1.exon2;Parent=MS.gene048096.t1 |
chr4.4 | CDS | 81624076 | 81624192 | 81624076 | ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1 |
chr4.4 | exon | 81624333 | 81624544 | 81624333 | ID=MS.gene048096.t1.exon3;Parent=MS.gene048096.t1 |
chr4.4 | CDS | 81624333 | 81624544 | 81624333 | ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1 |
chr4.4 | exon | 81624636 | 81624749 | 81624636 | ID=MS.gene048096.t1.exon4;Parent=MS.gene048096.t1 |
chr4.4 | CDS | 81624636 | 81624749 | 81624636 | ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1 |
chr4.4 | exon | 81627058 | 81627227 | 81627058 | ID=MS.gene048096.t1.exon5;Parent=MS.gene048096.t1 |
chr4.4 | CDS | 81627058 | 81627227 | 81627058 | ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1 |
Gene Sequence |
Protein sequence |