AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048096


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048096.t1 MTR_4g019610 96.567 233 7 1 1 232 1 233 1.45e-162 449
MS.gene048096.t1 MTR_2g461200 96.970 231 6 1 1 230 1 231 3.15e-161 446
MS.gene048096.t1 MTR_2g461200 96.970 231 6 1 1 230 1 231 3.46e-161 445
MS.gene048096.t1 MTR_4g019610 96.121 232 8 1 1 231 1 232 7.88e-160 443
MS.gene048096.t1 MTR_2g461200 93.889 180 10 1 1 179 1 180 1.53e-95 277
MS.gene048096.t1 MTR_5g088660 61.739 230 81 3 1 230 1 223 3.09e-81 242
MS.gene048096.t1 MTR_5g088685 75.000 48 12 0 132 179 2 49 6.15e-18 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048096.t1 AT2G18110 79.386 228 45 2 5 230 4 231 4.80e-111 318
MS.gene048096.t1 AT1G30230 77.391 230 50 2 5 232 4 233 5.12e-108 311
MS.gene048096.t1 AT1G30230 77.193 228 50 2 5 230 4 231 3.47e-106 306
MS.gene048096.t1 AT5G12110 62.174 230 85 2 1 230 1 228 3.20e-80 240
MS.gene048096.t1 AT5G19510 61.304 230 83 2 1 230 1 224 7.48e-73 221

Find 59 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGTCTGTAGTGGTGTTTC+TGG 0.150024 4.4:+81624322 MS.gene048096:intron
TTCAGTTGGAAGGGTTGTTC+TGG 0.178098 4.4:+81624720 MS.gene048096:CDS
TCAGTTCCATCATATGAATA+TGG 0.245099 4.4:+81624122 MS.gene048096:CDS
TCTTGTTTCCGTCGACAATA+TGG 0.332439 4.4:+81627122 MS.gene048096:CDS
GCTGCCTTTGTGTCAGAAAC+TGG 0.355924 4.4:-81624406 None:intergenic
TCAGTTGGAAGGGTTGTTCT+GGG 0.356979 4.4:+81624721 MS.gene048096:CDS
TTCTTGATACCGTACCCAAC+AGG 0.380470 4.4:-81627069 None:intergenic
TATAACCTTAAGGCTGAATC+TGG 0.393170 4.4:+81623917 MS.gene048096:CDS
GAAGAAGGCAGCTGAGGAAC+GGG 0.395604 4.4:+81624486 MS.gene048096:CDS
GATGACGATGTTGATTTGTT+TGG 0.410866 4.4:+81624445 MS.gene048096:CDS
TCAAGCCAGATTCAGCCTTA+AGG 0.411025 4.4:-81623922 None:intergenic
TCAAATTATGCTTACTATTG+TGG 0.416944 4.4:+81627095 MS.gene048096:CDS
GGTGTTTCTGGTGAGGGATC+TGG 0.436594 4.4:+81624334 MS.gene048096:CDS
GCAGCAGCCGTGAAGGCATC+CGG 0.445711 4.4:+81624508 MS.gene048096:CDS
AGTCACATTCTATAACCTTA+AGG 0.451347 4.4:+81623907 MS.gene048096:CDS
ACTCTGGACATACTCGTTGA+TGG 0.453826 4.4:-81627169 None:intergenic
CAGTTCCATCATATGAATAT+GGG 0.459928 4.4:+81624123 MS.gene048096:CDS
GTACCCAACAGGGACAAGTT+TGG 0.474254 4.4:-81627058 None:intergenic
CAGCCAAACTTGTCCCTGTT+GGG 0.476052 4.4:+81627055 MS.gene048096:intron
TTCCGTCGACAATATGGTTG+AGG 0.490036 4.4:+81627128 MS.gene048096:CDS
TAATGTCATCCTTTGAAGCT+TGG 0.497827 4.4:-81624079 None:intergenic
AGCAGTGAGATCTGTTCAGT+TGG 0.499725 4.4:+81624706 MS.gene048096:CDS
ACATTCCCATATTCATATGA+TGG 0.500557 4.4:-81624128 None:intergenic
GTGAGATCTGTTCAGTTGGA+AGG 0.509565 4.4:+81624710 MS.gene048096:CDS
TGGAAAATCATCTGTACTGT+TGG 0.509794 4.4:+81624637 MS.gene048096:CDS
AGAAGAAGGCAGCTGAGGAA+CGG 0.514292 4.4:+81624485 MS.gene048096:CDS
TTCTTCGAGCTTCTTCATGT+CGG 0.515820 4.4:-81624684 None:intergenic
TATTCATATGATGGAACTGA+TGG 0.520528 4.4:-81624119 None:intergenic
AGAGACTGAGGAAGAGAAGA+AGG 0.523236 4.4:+81624471 MS.gene048096:CDS
GTTTAGGTACCAAGCTTCAA+AGG 0.531194 4.4:+81624070 MS.gene048096:intron
ATGTCGGTTTCATCATCCCA+TGG 0.531275 4.4:-81624668 None:intergenic
TGTAGTGGTGTTTCTGGTGA+GGG 0.534968 4.4:+81624328 MS.gene048096:intron
CTCACACGCAGTTACATCAC+TGG 0.535094 4.4:+81623965 MS.gene048096:CDS
ACAGCCAAACTTGTCCCTGT+TGG 0.544104 4.4:+81627054 MS.gene048096:intron
CTCTGGACATACTCGTTGAT+GGG 0.546234 4.4:-81627168 None:intergenic
AAACTTGTCCCTGTTGGGTA+CGG 0.548491 4.4:+81627060 MS.gene048096:CDS
CAGTTGGAAGGGTTGTTCTG+GGG 0.550288 4.4:+81624722 MS.gene048096:CDS
TTCTGACACAAAGGCAGCTG+AGG 0.553231 4.4:+81624411 MS.gene048096:CDS
TACTGTTGGATGTGAAGCCA+TGG 0.557522 4.4:+81624651 MS.gene048096:CDS
GGAACGGGCAGCAGCCGTGA+AGG 0.572363 4.4:+81624501 MS.gene048096:CDS
TGAGATCTGTTCAGTTGGAA+GGG 0.572783 4.4:+81624711 MS.gene048096:CDS
CTGTAGTGGTGTTTCTGGTG+AGG 0.577236 4.4:+81624327 MS.gene048096:intron
AGGCCACAATGTCACAACTC+TGG 0.585892 4.4:-81627185 None:intergenic
ATCCTCAACCATATTGTCGA+CGG 0.593242 4.4:-81627130 None:intergenic
CACCGTGGAATCTTCTCTTG+TGG 0.597197 4.4:+81624360 MS.gene048096:CDS
ATGAATATGGGAATGTTGCT+AGG 0.597917 4.4:+81624135 MS.gene048096:CDS
GGAAGAGAAGAAGGCAGCTG+AGG 0.604357 4.4:+81624480 MS.gene048096:CDS
TGTGTCAGAAACTGGAGGAG+TGG 0.624152 4.4:-81624398 None:intergenic
TCCTCCAGTTTCTGACACAA+AGG 0.631021 4.4:+81624402 MS.gene048096:CDS
GCCTTTGTGTCAGAAACTGG+AGG 0.631902 4.4:-81624403 None:intergenic
TCACACGCAGTTACATCACT+GGG 0.638579 4.4:+81623966 MS.gene048096:CDS
TGTCCAGAGTTGTGACATTG+TGG 0.639251 4.4:+81627182 MS.gene048096:CDS
TGATGTAACTGCGTGTGAGA+AGG 0.646574 4.4:-81623961 None:intergenic
AGCCACAAGAGAAGATTCCA+CGG 0.646775 4.4:-81624362 None:intergenic
ACTGTTGGATGTGAAGCCAT+GGG 0.650142 4.4:+81624652 MS.gene048096:CDS
TCTTGATACCGTACCCAACA+GGG 0.655761 4.4:-81627068 None:intergenic
TTTGTTTGGTGAAGAGACTG+AGG 0.673347 4.4:+81624459 MS.gene048096:CDS
TGAGGGATCTGGTGTCACCG+TGG 0.761218 4.4:+81624345 MS.gene048096:CDS
AATATGGGAATGTTGCTAGG+TGG 0.778608 4.4:+81624138 MS.gene048096:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATCTAAATAATAAAAAA+AGG + chr4.4:81626222-81626241 MS.gene048096:intron 10.0%
!! CTAATCTAAATAATAAAAAA+AGG - chr4.4:81626241-81626222 None:intergenic 10.0%
!!! TGTAAATTAACATTTTTTTT+AGG - chr4.4:81626178-81626197 None:intergenic 10.0%
!!! TGTAAATTAACTTTTTTTTT+GGG + chr4.4:81625238-81625257 MS.gene048096:intron 10.0%
!!! TTGTAAATTAACTTTTTTTT+TGG + chr4.4:81625237-81625256 MS.gene048096:intron 10.0%
!! AAAAATAAAAGGGATAAAAA+AGG + chr4.4:81626120-81626139 MS.gene048096:intron 15.0%
!! ACAAAAAAAAAGGATAAAAA+AGG - chr4.4:81625275-81625294 None:intergenic 15.0%
!! ATCTAAATAATAAAAAAAGG+AGG + chr4.4:81626225-81626244 MS.gene048096:intron 15.0%
!! ATCTAAATAATAAAAAAAGG+AGG - chr4.4:81626244-81626225 None:intergenic 15.0%
!! TAATTCAAATGAATTGTATT+CGG + chr4.4:81624262-81624281 MS.gene048096:intron 15.0%
!! TCTAATTAATTTACAAAGAT+TGG - chr4.4:81624209-81624228 None:intergenic 15.0%
!!! ATTGAAAAACAGTAATTTTA+TGG - chr4.4:81626884-81626903 None:intergenic 15.0%
!!! TATAATAAAGATTTTGTTTG+CGG + chr4.4:81624232-81624251 MS.gene048096:intron 15.0%
!!! TGTTTTTATTTGATTTGTTT+AGG + chr4.4:81624054-81624073 MS.gene048096:intron 15.0%
!!! TTGCTATTACAAAAATAAAA+GGG + chr4.4:81626110-81626129 MS.gene048096:intron 15.0%
!! AAAAACAGAGATGAAAATAA+AGG + chr4.4:81626596-81626615 MS.gene048096:intron 20.0%
!! AAACTTGAACAATTTCAATA+AGG + chr4.4:81625525-81625544 MS.gene048096:intron 20.0%
!! AATAATAAAAAAAGGAGGAA+TGG + chr4.4:81626230-81626249 MS.gene048096:intron 20.0%
!! AATTCTAACCCAAAAAAAAT+TGG + chr4.4:81626146-81626165 MS.gene048096:intron 20.0%
!! CATATAAAATTGTAGCAAAA+GGG + chr4.4:81626486-81626505 MS.gene048096:intron 20.0%
!! TAATTTACAAAGATTGGAAT+GGG - chr4.4:81624203-81624222 None:intergenic 20.0%
!! TGGATAAAAAATTAGACTAT+TGG - chr4.4:81624997-81625016 None:intergenic 20.0%
!! TTAATTTACAAAGATTGGAA+TGG - chr4.4:81624204-81624223 None:intergenic 20.0%
!!! AAAGTTTGTTTTCACTATTT+TGG - chr4.4:81625017-81625036 None:intergenic 20.0%
!!! ACTTGCTATTACAAAAAAAA+AGG - chr4.4:81625285-81625304 None:intergenic 20.0%
!!! CTTGCTATTACAAAAATAAA+AGG + chr4.4:81626109-81626128 MS.gene048096:intron 20.0%
!!! TTTTATAAATGCCATTTAGT+TGG - chr4.4:81626432-81626451 None:intergenic 20.0%
! AAACTTGCACAATTTCAATA+AGG - chr4.4:81625866-81625885 None:intergenic 25.0%
! AATAGACGAAAAGATAAGAA+CGG - chr4.4:81624773-81624792 None:intergenic 25.0%
! ATAATAAAAAAAGGAGGATG+AGG - chr4.4:81625185-81625204 None:intergenic 25.0%
! ATGAAAATAAAGGAGAAAGA+AGG + chr4.4:81626606-81626625 MS.gene048096:intron 25.0%
! CCATATAAAATTGTAGCAAA+AGG + chr4.4:81626485-81626504 MS.gene048096:intron 25.0%
! TCAAATTATGCTTACTATTG+TGG + chr4.4:81627095-81627114 MS.gene048096:CDS 25.0%
! TGTTGTATACTATTCTTCAA+GGG + chr4.4:81624877-81624896 MS.gene048096:intron 25.0%
! TTGATTTCCATTGAAAAACT+CGG + chr4.4:81626519-81626538 MS.gene048096:intron 25.0%
! TTGTTGTATACTATTCTTCA+AGG + chr4.4:81624876-81624895 MS.gene048096:intron 25.0%
!! CCTTTTGCTACAATTTTATA+TGG - chr4.4:81626488-81626507 None:intergenic 25.0%
!! TTACTTACAGATTTTGTTGA+AGG - chr4.4:81627208-81627227 None:intergenic 25.0%
!! TTTTGTAATAGCAAGTACAT+GGG + chr4.4:81625289-81625308 MS.gene048096:intron 25.0%
!! TTTTGTAATAGCAAGTACAT+GGG - chr4.4:81625308-81625289 None:intergenic 25.0%
!! TTTTTGTAATAGCAAGTACA+TGG + chr4.4:81625288-81625307 MS.gene048096:intron 25.0%
!! TTTTTGTAATAGCAAGTACA+TGG - chr4.4:81625307-81625288 None:intergenic 25.0%
!!! ACTCATAATTTGTTGAAATC+TGG + chr4.4:81624567-81624586 MS.gene048096:intron 25.0%
!!! AGGATGATACCAATTTTTTT+TGG - chr4.4:81626158-81626177 None:intergenic 25.0%
!!! ATAATTTGTTGAAATCTGGT+TGG + chr4.4:81624571-81624590 MS.gene048096:intron 25.0%
!!! GGATGATACCAATTTTTTTT+GGG - chr4.4:81626157-81626176 None:intergenic 25.0%
!!! TATGATTTTTGGTTCTTCAT+AGG + chr4.4:81623994-81624013 MS.gene048096:intron 25.0%
!!! TTTTAATTTTGTGTCTGTAG+TGG + chr4.4:81624313-81624332 MS.gene048096:intron 25.0%
ACATTCCCATATTCATATGA+TGG - chr4.4:81624131-81624150 None:intergenic 30.0%
AGAAGAAAGAAACACAAAAG+AGG - chr4.4:81625086-81625105 None:intergenic 30.0%
AGTCACATTCTATAACCTTA+AGG + chr4.4:81623907-81623926 MS.gene048096:CDS 30.0%
CACGTAAAAATGTTGTAGAA+GGG + chr4.4:81626387-81626406 MS.gene048096:intron 30.0%
CAGTTCCATCATATGAATAT+GGG + chr4.4:81624123-81624142 MS.gene048096:CDS 30.0%
GAAGAAAGAAACACAAAAGA+GGG - chr4.4:81625085-81625104 None:intergenic 30.0%
GTTAACTTCAAAAGGAGTTT+GGG + chr4.4:81625502-81625521 MS.gene048096:intron 30.0%
GTTAACTTCAAAAGGAGTTT+GGG - chr4.4:81625521-81625502 None:intergenic 30.0%
TCAGTTCCATCATATGAATA+TGG + chr4.4:81624122-81624141 MS.gene048096:CDS 30.0%
TTTGATCTGTCTCAAAGAAT+GGG + chr4.4:81626041-81626060 MS.gene048096:intron 30.0%
! CTTACTTTCTTTCTTTTTGC+CGG - chr4.4:81624530-81624549 None:intergenic 30.0%
! TATTCATATGATGGAACTGA+TGG - chr4.4:81624122-81624141 None:intergenic 30.0%
! TTTTGATCTGTCTCAAAGAA+TGG + chr4.4:81626040-81626059 MS.gene048096:intron 30.0%
!! AGCAAATCCTATTTCTTTTC+TGG + chr4.4:81625816-81625835 MS.gene048096:intron 30.0%
!! TTTGATTTGTCTCAGAGAAT+GGG - chr4.4:81625352-81625371 None:intergenic 30.0%
!!! CCTTTTGAAGTTAACCATTT+CGG + chr4.4:81625894-81625913 MS.gene048096:intron 30.0%
!!! TTTTGATTTGTCTCAGAGAA+TGG - chr4.4:81625353-81625372 None:intergenic 30.0%
AAAAAAAGGAGGATGAGGTT+GGG - chr4.4:81625180-81625199 None:intergenic 35.0%
AAAGAAACACAAAAGAGGGA+GGG - chr4.4:81625081-81625100 None:intergenic 35.0%
AAGAAGGATAGATCCAAATC+AGG + chr4.4:81626622-81626641 MS.gene048096:intron 35.0%
AAGAGATGAAAGAGAGGATT+AGG - chr4.4:81625470-81625489 None:intergenic 35.0%
AAGGCAACCAGAAAAGAAAT+AGG + chr4.4:81625565-81625584 MS.gene048096:intron 35.0%
AGAAGAAAGAAACACAGAGA+GGG + chr4.4:81626800-81626819 MS.gene048096:intron 35.0%
AGAGATGAAAGAGAGGATTA+GGG - chr4.4:81625469-81625488 None:intergenic 35.0%
ATAGGGAGAAGAGTTTATCA+TGG + chr4.4:81626741-81626760 MS.gene048096:intron 35.0%
ATAGGGAGAAGAGTTTATCA+TGG - chr4.4:81626760-81626741 None:intergenic 35.0%
ATGAATATGGGAATGTTGCT+AGG + chr4.4:81624135-81624154 MS.gene048096:CDS 35.0%
CCACGTAAAAATGTTGTAGA+AGG + chr4.4:81626386-81626405 MS.gene048096:intron 35.0%
CCGAAATGGTTAACTTCAAA+AGG - chr4.4:81625897-81625916 None:intergenic 35.0%
CTATCGGAAAACAACCATTA+TGG - chr4.4:81626661-81626680 None:intergenic 35.0%
GAAGAGTTTATCATGGTTGT+TGG + chr4.4:81626748-81626767 MS.gene048096:intron 35.0%
GAAGAGTTTATCATGGTTGT+TGG - chr4.4:81626767-81626748 None:intergenic 35.0%
GAGAGATTTGTGTGTGAATA+GGG + chr4.4:81626724-81626743 MS.gene048096:intron 35.0%
GAGAGATTTGTGTGTGAATA+GGG - chr4.4:81626743-81626724 None:intergenic 35.0%
GGTTAACTTCAAAAGGAGTT+TGG + chr4.4:81625501-81625520 MS.gene048096:intron 35.0%
GGTTAACTTCAAAAGGAGTT+TGG - chr4.4:81625520-81625501 None:intergenic 35.0%
TAAAAAAAGGAGGATGAGGT+TGG - chr4.4:81625181-81625200 None:intergenic 35.0%
TATAACCTTAAGGCTGAATC+TGG + chr4.4:81623917-81623936 MS.gene048096:CDS 35.0%
TCTGGTTGGACATCAATTTA+TGG + chr4.4:81624585-81624604 MS.gene048096:intron 35.0%
TGAGAGATTTGTGTGTGAAT+AGG + chr4.4:81626723-81626742 MS.gene048096:intron 35.0%
TGAGAGATTTGTGTGTGAAT+AGG - chr4.4:81626742-81626723 None:intergenic 35.0%
TGGAAAATCATCTGTACTGT+TGG + chr4.4:81624637-81624656 MS.gene048096:CDS 35.0%
TGGATCAAGTGAGATATGAT+GGG - chr4.4:81624977-81624996 None:intergenic 35.0%
TTGGATCAAGTGAGATATGA+TGG - chr4.4:81624978-81624997 None:intergenic 35.0%
! AAGAGATGAGAGAAAGTATG+AGG - chr4.4:81625421-81625440 None:intergenic 35.0%
! ACATTTTTACGTGGTCGTTT+TGG - chr4.4:81626380-81626399 None:intergenic 35.0%
! ACCTAGTCATTTAGAATCAG+CGG + chr4.4:81625375-81625394 MS.gene048096:intron 35.0%
! ACTGGGTAGGTTATGATTTT+TGG + chr4.4:81623983-81624002 MS.gene048096:intron 35.0%
! AGATGATTTTCCACCTAGAA+TGG - chr4.4:81624630-81624649 None:intergenic 35.0%
! CCATAGTCATTTAAGATCAG+CGG - chr4.4:81626016-81626035 None:intergenic 35.0%
! CCTTCTACAACATTTTTACG+TGG - chr4.4:81626389-81626408 None:intergenic 35.0%
!! ACAAGTTTGTTTTCCCCTAT+TGG + chr4.4:81624938-81624957 MS.gene048096:intron 35.0%
!! ACTAGATCCGAGTTTTTCAA+TGG - chr4.4:81626529-81626548 None:intergenic 35.0%
!! AGCAGATCCTATTTCTTTTC+TGG - chr4.4:81625575-81625594 None:intergenic 35.0%
!! CAAGTTTGTTTTCCCCTATT+GGG + chr4.4:81624939-81624958 MS.gene048096:intron 35.0%
!! CATAATGGTTGTTTTCCGAT+AGG + chr4.4:81626659-81626678 MS.gene048096:intron 35.0%
!! GATGACGATGTTGATTTGTT+TGG + chr4.4:81624445-81624464 MS.gene048096:CDS 35.0%
!! GTTGTTTGATTTGTGACATG+AGG + chr4.4:81626689-81626708 MS.gene048096:intron 35.0%
!! TAATGTCATCCTTTGAAGCT+TGG - chr4.4:81624082-81624101 None:intergenic 35.0%
!! TTGATTTGTGACATGAGGTT+GGG + chr4.4:81626694-81626713 MS.gene048096:intron 35.0%
!! TTTGATTTGTGACATGAGGT+TGG + chr4.4:81626693-81626712 MS.gene048096:intron 35.0%
!!! CCTTTTGAAGTTAACCACTT+CGG - chr4.4:81625497-81625516 None:intergenic 35.0%
!!! GGTTTTGATTGGATCAGTTA+TGG - chr4.4:81625448-81625467 None:intergenic 35.0%
!!! TTCTTTTCTGGTTGCCTTAT+AGG - chr4.4:81625563-81625582 None:intergenic 35.0%
!!! TTTTCTGCTGATTCCATTCT+AGG + chr4.4:81624614-81624633 MS.gene048096:intron 35.0%
AAGAGATGAGAGTGAGGATT+AGG + chr4.4:81625921-81625940 MS.gene048096:intron 40.0%
AAGAGATGAGATAGGGTATG+AGG + chr4.4:81625970-81625989 MS.gene048096:intron 40.0%
AAGGCAGCCAGAAAAGAAAT+AGG - chr4.4:81625826-81625845 None:intergenic 40.0%
AATATGGGAATGTTGCTAGG+TGG + chr4.4:81624138-81624157 MS.gene048096:CDS 40.0%
ACAGATCTGTGCCAACTAAA+TGG + chr4.4:81626418-81626437 MS.gene048096:intron 40.0%
ACTTGAGATTGACCCAATAG+GGG - chr4.4:81624954-81624973 None:intergenic 40.0%
AGAGATGAGAGTGAGGATTA+GGG + chr4.4:81625922-81625941 MS.gene048096:intron 40.0%
ATCCTCAACCATATTGTCGA+CGG - chr4.4:81627133-81627152 None:intergenic 40.0%
ATGGACGAAAGAGATGAGAT+AGG + chr4.4:81625962-81625981 MS.gene048096:intron 40.0%
CAAACAACACCACAACCTAT+CGG - chr4.4:81626677-81626696 None:intergenic 40.0%
CATTGATGCACAAGGATTTG+GGG + chr4.4:81625648-81625667 MS.gene048096:intron 40.0%
CATTGATGCACAAGGATTTG+GGG - chr4.4:81625667-81625648 None:intergenic 40.0%
CCGAAGTGGTTAACTTCAAA+AGG + chr4.4:81625494-81625513 MS.gene048096:intron 40.0%
CCGCTGATCTTAAATGACTA+TGG + chr4.4:81626013-81626032 MS.gene048096:intron 40.0%
CTCCATATTCTACTATGACC+CGG - chr4.4:81625315-81625334 None:intergenic 40.0%
GAAAGAAACACAAAAGAGGG+AGG - chr4.4:81625082-81625101 None:intergenic 40.0%
GACTTGAGATTGACCCAATA+GGG - chr4.4:81624955-81624974 None:intergenic 40.0%
GAGAAGAAAGAAACACAGAG+AGG + chr4.4:81626799-81626818 MS.gene048096:intron 40.0%
GAGTTTATCATGGTTGTTGG+AGG + chr4.4:81626751-81626770 MS.gene048096:intron 40.0%
GAGTTTATCATGGTTGTTGG+AGG - chr4.4:81626770-81626751 None:intergenic 40.0%
GGTTTCGATTGGATCAGTTA+TGG + chr4.4:81625943-81625962 MS.gene048096:intron 40.0%
GTAATAGCAAGTACATGGGT+CGG - chr4.4:81626100-81626119 None:intergenic 40.0%
GTTTAGGTACCAAGCTTCAA+AGG + chr4.4:81624070-81624089 MS.gene048096:intron 40.0%
TAATAGCAAGTACATGGGTC+GGG - chr4.4:81626099-81626118 None:intergenic 40.0%
TCTCTGCAATACGAAGACTA+AGG - chr4.4:81626945-81626964 None:intergenic 40.0%
TGAGATCTGTTCAGTTGGAA+GGG + chr4.4:81624711-81624730 MS.gene048096:CDS 40.0%
TGGACGAAAGAGATGAGATA+GGG + chr4.4:81625963-81625982 MS.gene048096:intron 40.0%
TTCTTCGAGCTTCTTCATGT+CGG - chr4.4:81624687-81624706 None:intergenic 40.0%
! AATATGGAGTGTTCAAGACC+CGG + chr4.4:81625326-81625345 MS.gene048096:intron 40.0%
! CTGGTGCACAAATAAGCTTT+TGG + chr4.4:81624905-81624924 MS.gene048096:intron 40.0%
! GCATTGATGCACAAGGATTT+GGG + chr4.4:81625647-81625666 MS.gene048096:intron 40.0%
! GCATTGATGCACAAGGATTT+GGG - chr4.4:81625666-81625647 None:intergenic 40.0%
! TCTTGTTTCCGTCGACAATA+TGG + chr4.4:81627122-81627141 MS.gene048096:CDS 40.0%
! TTTGTTTGGTGAAGAGACTG+AGG + chr4.4:81624459-81624478 MS.gene048096:CDS 40.0%
!! ACCGCTGATTCTAAATGACT+AGG - chr4.4:81625379-81625398 None:intergenic 40.0%
!! GAGAGGATTAGGGTTTTGAT+TGG - chr4.4:81625459-81625478 None:intergenic 40.0%
!! GTTGTTGGAGGATTTGTTGT+TGG + chr4.4:81626763-81626782 MS.gene048096:intron 40.0%
!!! TTCTTTTCTGGCTGCCTTAT+AGG + chr4.4:81625828-81625847 MS.gene048096:intron 40.0%
AAACTTGTCCCTGTTGGGTA+CGG + chr4.4:81627060-81627079 MS.gene048096:CDS 45.0%
ACTCTGGACATACTCGTTGA+TGG - chr4.4:81627172-81627191 None:intergenic 45.0%
ACTGTTGGATGTGAAGCCAT+GGG + chr4.4:81624652-81624671 MS.gene048096:CDS 45.0%
AGAAAGAAACACAGAGAGGG+AGG + chr4.4:81626803-81626822 MS.gene048096:intron 45.0%
AGAGACACACTCTCCTGATT+TGG - chr4.4:81626638-81626657 None:intergenic 45.0%
AGAGACTGAGGAAGAGAAGA+AGG + chr4.4:81624471-81624490 MS.gene048096:CDS 45.0%
AGATGCAGTTGGGTATGCAA+CGG + chr4.4:81625683-81625702 MS.gene048096:intron 45.0%
AGCAGTGAGATCTGTTCAGT+TGG + chr4.4:81624706-81624725 MS.gene048096:CDS 45.0%
AGCCACAAGAGAAGATTCCA+CGG - chr4.4:81624365-81624384 None:intergenic 45.0%
ATCTGTCTCAAAGAATGGGC+CGG + chr4.4:81626045-81626064 MS.gene048096:intron 45.0%
ATTTGTCTCAGAGAATGGGC+CGG - chr4.4:81625348-81625367 None:intergenic 45.0%
CTCATCTCTTTCGTCCGAAA+TGG - chr4.4:81625911-81625930 None:intergenic 45.0%
CTCTGGACATACTCGTTGAT+GGG - chr4.4:81627171-81627190 None:intergenic 45.0%
GAAAGAAACACAGAGAGGGA+GGG + chr4.4:81626804-81626823 MS.gene048096:intron 45.0%
GGACGAAAGAGATGAAAGAG+AGG - chr4.4:81625476-81625495 None:intergenic 45.0%
GGACTTGAGATTGACCCAAT+AGG - chr4.4:81624956-81624975 None:intergenic 45.0%
GTAATAGCAAGTACATGGGC+CGG + chr4.4:81625293-81625312 MS.gene048096:intron 45.0%
GTGAGATCTGTTCAGTTGGA+AGG + chr4.4:81624710-81624729 MS.gene048096:CDS 45.0%
GTGAGGATTAGGGTTTCGAT+TGG + chr4.4:81625932-81625951 MS.gene048096:intron 45.0%
TAATAGCAAGTACATGGGCC+GGG + chr4.4:81625294-81625313 MS.gene048096:intron 45.0%
TACTGTTGGATGTGAAGCCA+TGG + chr4.4:81624651-81624670 MS.gene048096:CDS 45.0%
TCAAGCCAGATTCAGCCTTA+AGG - chr4.4:81623925-81623944 None:intergenic 45.0%
TCACACGCAGTTACATCACT+GGG + chr4.4:81623966-81623985 MS.gene048096:CDS 45.0%
TCAGTTGGAAGGGTTGTTCT+GGG + chr4.4:81624721-81624740 MS.gene048096:CDS 45.0%
TCCTCCAGTTTCTGACACAA+AGG + chr4.4:81624402-81624421 MS.gene048096:CDS 45.0%
TCTTGATACCGTACCCAACA+GGG - chr4.4:81627071-81627090 None:intergenic 45.0%
TGATGTAACTGCGTGTGAGA+AGG - chr4.4:81623964-81623983 None:intergenic 45.0%
TGTCCAGAGTTGTGACATTG+TGG + chr4.4:81627182-81627201 MS.gene048096:CDS 45.0%
TGTGTCTGTAGTGGTGTTTC+TGG + chr4.4:81624322-81624341 MS.gene048096:intron 45.0%
TTCAGTTGGAAGGGTTGTTC+TGG + chr4.4:81624720-81624739 MS.gene048096:CDS 45.0%
TTCATCTCTTTCGTCCGAAG+TGG + chr4.4:81625480-81625499 MS.gene048096:intron 45.0%
TTCCGTCGACAATATGGTTG+AGG + chr4.4:81627128-81627147 MS.gene048096:CDS 45.0%
TTCTTGATACCGTACCCAAC+AGG - chr4.4:81627072-81627091 None:intergenic 45.0%
TTGCAGCAGTAGATGCAGTT+GGG + chr4.4:81625673-81625692 MS.gene048096:intron 45.0%
TTTGCAACACCAGATGCAGT+TGG - chr4.4:81625719-81625738 None:intergenic 45.0%
TTTGCAGCAGTAGATGCAGT+TGG + chr4.4:81625672-81625691 MS.gene048096:intron 45.0%
! CTATTCTTCAAGGGCATGTC+TGG + chr4.4:81624886-81624905 MS.gene048096:intron 45.0%
! GAGAGTGTGTCTCTCCATAA+TGG + chr4.4:81626644-81626663 MS.gene048096:intron 45.0%
!! ATGTCGGTTTCATCATCCCA+TGG - chr4.4:81624671-81624690 None:intergenic 45.0%
!! GGCATTGATGCACAAGGATT+TGG + chr4.4:81625646-81625665 MS.gene048096:intron 45.0%
!! GGCATTGATGCACAAGGATT+TGG - chr4.4:81625665-81625646 None:intergenic 45.0%
!! GGTTGTTTTCCGATAGGTTG+TGG + chr4.4:81626665-81626684 MS.gene048096:intron 45.0%
!! TCTGCTGATTCCATTCTAGG+TGG + chr4.4:81624617-81624636 MS.gene048096:intron 45.0%
!! TGTAGTGGTGTTTCTGGTGA+GGG + chr4.4:81624328-81624347 MS.gene048096:intron 45.0%
AACACCAGATGCAGTTGGCA+TGG - chr4.4:81625714-81625733 None:intergenic 50.0%
ACAGCCAAACTTGTCCCTGT+TGG + chr4.4:81627054-81627073 MS.gene048096:intron 50.0%
ACGCAGTTACATCACTGGGT+AGG + chr4.4:81623970-81623989 MS.gene048096:intron 50.0%
AGAAGAAGGCAGCTGAGGAA+CGG + chr4.4:81624485-81624504 MS.gene048096:CDS 50.0%
AGGCCACAATGTCACAACTC+TGG - chr4.4:81627188-81627207 None:intergenic 50.0%
CACCGTGGAATCTTCTCTTG+TGG + chr4.4:81624360-81624379 MS.gene048096:CDS 50.0%
CAGCCAAACTTGTCCCTGTT+GGG + chr4.4:81627055-81627074 MS.gene048096:intron 50.0%
CAGTTGGAAGGGTTGTTCTG+GGG + chr4.4:81624722-81624741 MS.gene048096:CDS 50.0%
CTCACACGCAGTTACATCAC+TGG + chr4.4:81623965-81623984 MS.gene048096:CDS 50.0%
GCCTTTGTGTCAGAAACTGG+AGG - chr4.4:81624406-81624425 None:intergenic 50.0%
GCTGCCTTTGTGTCAGAAAC+TGG - chr4.4:81624409-81624428 None:intergenic 50.0%
GGACGAAAGAGATGAGAGTG+AGG + chr4.4:81625915-81625934 MS.gene048096:intron 50.0%
GGCCGGGTCATAGTAGAATA+TGG + chr4.4:81625310-81625329 MS.gene048096:intron 50.0%
GGTCGGGTCATAGTAGAATC+CGG - chr4.4:81626083-81626102 None:intergenic 50.0%
GTACCCAACAGGGACAAGTT+TGG - chr4.4:81627061-81627080 None:intergenic 50.0%
GTGAGACATGCAAAGGATGC+TGG + chr4.4:81625625-81625644 MS.gene048096:intron 50.0%
GTGAGACATGCAAAGGATGC+TGG - chr4.4:81625644-81625625 None:intergenic 50.0%
TCTCACAGCACGCTTAGCAT+TGG + chr4.4:81625780-81625799 MS.gene048096:intron 50.0%
TCTCACAGCACGCTTAGCAT+TGG - chr4.4:81625799-81625780 None:intergenic 50.0%
TCTGTCTCAAAGAATGGGCC+GGG + chr4.4:81626046-81626065 MS.gene048096:intron 50.0%
TGTGTCAGAAACTGGAGGAG+TGG - chr4.4:81624401-81624420 None:intergenic 50.0%
TTCTGACACAAAGGCAGCTG+AGG + chr4.4:81624411-81624430 MS.gene048096:CDS 50.0%
TTTGTCTCAGAGAATGGGCC+GGG - chr4.4:81625347-81625366 None:intergenic 50.0%
! AATCCGGAGTGTTCAAGACC+CGG - chr4.4:81626067-81626086 None:intergenic 50.0%
! CACAAGTGAGACGAGTGTTG+TGG - chr4.4:81626859-81626878 None:intergenic 50.0%
! CTTTTTGCCGGATGCCTTCA+CGG - chr4.4:81624518-81624537 None:intergenic 50.0%
! GGAGCTTGCTTCTGCCTATA+AGG + chr4.4:81625546-81625565 MS.gene048096:intron 50.0%
! GGAGCTTGCTTCTGCCTATA+AGG - chr4.4:81625565-81625546 None:intergenic 50.0%
!! CTGTAGTGGTGTTTCTGGTG+AGG + chr4.4:81624327-81624346 MS.gene048096:intron 50.0%
!! GATGCTGGCATTGATGCACA+AGG + chr4.4:81625640-81625659 MS.gene048096:intron 50.0%
!! GATGCTGGCATTGATGCACA+AGG - chr4.4:81625659-81625640 None:intergenic 50.0%
CGTTCCATGCCAACTGCATC+TGG + chr4.4:81625707-81625726 MS.gene048096:intron 55.0%
GAAGAAGGCAGCTGAGGAAC+GGG + chr4.4:81624486-81624505 MS.gene048096:CDS 55.0%
GCGTGCTGTGAGACATGCAA+AGG + chr4.4:81625618-81625637 MS.gene048096:intron 55.0%
GCGTGCTGTGAGACATGCAA+AGG - chr4.4:81625637-81625618 None:intergenic 55.0%
GGAAGAGAAGAAGGCAGCTG+AGG + chr4.4:81624480-81624499 MS.gene048096:CDS 55.0%
!! GGTGTTTCTGGTGAGGGATC+TGG + chr4.4:81624334-81624353 MS.gene048096:CDS 55.0%
! GTGAGACGAGTGTTGTGGCG+CGG - chr4.4:81626854-81626873 None:intergenic 60.0%
!! TGAGGGATCTGGTGTCACCG+TGG + chr4.4:81624345-81624364 MS.gene048096:CDS 60.0%
GGGCCGGGTCTTGAACACTC+CGG + chr4.4:81626061-81626080 MS.gene048096:intron 65.0%
!! GCAGCAGCCGTGAAGGCATC+CGG + chr4.4:81624508-81624527 MS.gene048096:CDS 65.0%
GGAACGGGCAGCAGCCGTGA+AGG + chr4.4:81624501-81624520 MS.gene048096:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 81623902 81627227 81623902 ID=MS.gene048096
chr4.4 mRNA 81623902 81627227 81623902 ID=MS.gene048096.t1;Parent=MS.gene048096
chr4.4 exon 81623902 81623987 81623902 ID=MS.gene048096.t1.exon1;Parent=MS.gene048096.t1
chr4.4 CDS 81623902 81623987 81623902 ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1
chr4.4 exon 81624076 81624192 81624076 ID=MS.gene048096.t1.exon2;Parent=MS.gene048096.t1
chr4.4 CDS 81624076 81624192 81624076 ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1
chr4.4 exon 81624333 81624544 81624333 ID=MS.gene048096.t1.exon3;Parent=MS.gene048096.t1
chr4.4 CDS 81624333 81624544 81624333 ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1
chr4.4 exon 81624636 81624749 81624636 ID=MS.gene048096.t1.exon4;Parent=MS.gene048096.t1
chr4.4 CDS 81624636 81624749 81624636 ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1
chr4.4 exon 81627058 81627227 81627058 ID=MS.gene048096.t1.exon5;Parent=MS.gene048096.t1
chr4.4 CDS 81627058 81627227 81627058 ID=cds.MS.gene048096.t1;Parent=MS.gene048096.t1
Gene Sequence

>MS.gene048096

ATGGCAGTCACATTCTATAACCTTAAGGCTGAATCTGGCTTGAAGAAGCTTGATGAGTACCTTCTCACACGCAGTTACATCACTGGGTAGGTTATGATTTTTGGTTCTTCATAGGTTGTTTATTTGTTTGATATTTTGTTTCTTATGAATTGTGTTTTTATTTGATTTGTTTAGGTACCAAGCTTCAAAGGATGACATTACTGTCTATTCAGCTTTGCCATCAGTTCCATCATATGAATATGGGAATGTTGCTAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCGTAAGTTCCCATTCCAATCTTTGTAAATTAATTAGAAATTATAATAAAGATTTTGTTTGCGGTATTTAATAATTCAAATGAATTGTATTCGGCAAGCATTATTTGTGTAGTTTTTTCAAATTTTAATTTTGTGTCTGTAGTGGTGTTTCTGGTGAGGGATCTGGTGTCACCGTGGAATCTTCTCTTGTGGCTGAAGATGTTGTTGCCACTCCTCCAGTTTCTGACACAAAGGCAGCTGAGGATGATGATGATGATGACGATGTTGATTTGTTTGGTGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCAGCAGCCGTGAAGGCATCCGGCAAAAAGAAAGAAAGTAAGTTTTTGTCGTATCATGTACTCATAATTTGTTGAAATCTGGTTGGACATCAATTTATGGTGTTTGTTTTCTGCTGATTCCATTCTAGGTGGAAAATCATCTGTACTGTTGGATGTGAAGCCATGGGATGATGAAACCGACATGAAGAAGCTCGAAGAAGCAGTGAGATCTGTTCAGTTGGAAGGGTTGTTCTGGGGTGCATGTATGTTATTTTTCTCTTTACCGTTCTTATCTTTTCGTCTATTTATATTTGCACATTTCAAATTGTTGATTGCTTCTATTCTGATTGTATAATATATGATATGATTCTGAATGACAAGTTTGAGTTTTGTTGTATACTATTCTTCAAGGGCATGTCTGGTGCACAAATAAGCTTTTGGTGTATGATGCACAAGTTTGTTTTCCCCTATTGGGTCAATCTCAAGTCCCATCATATCTCACTTGATCCAATAGTCTAATTTTTTATCCAAAATAGTGAAAACAAACTTTATCTGATTAGTGACAACTCATGTAACGTAACACGACATGTGCCCTCCCTCTTTTGTGTTTCTTTCTTCTCTCTGCTCACAAATCCTCCAACAACCATGATAAACTCTTCTCCCTATTCACACACAAATCTCTCATATATTCCCAACCTCATCCTCCTTTTTTTATTATTTAGATTAGATTTAGTTAGATCGCAAATTTATTTGTAAATTAACTTTTTTTTTGGGTTAGAATTTTACCTTTTTTATCCTTTTTTTTTGTAATAGCAAGTACATGGGCCGGGTCATAGTAGAATATGGAGTGTTCAAGACCCGGCCCATTCTCTGAGACAAATCAAAAAAACCTAGTCATTTAGAATCAGCGGTACATCGATACAAATCAAAACCTCATACTTTCTCTCATCTCTTTCGTCCATAACTGATCCAATCAAAACCCTAATCCTCTCTTTCATCTCTTTCGTCCGAAGTGGTTAACTTCAAAAGGAGTTTGGGAAACTTGAACAATTTCAATAAGGAGCTTGCTTCTGCCTATAAGGCAACCAGAAAAGAAATAGGATCTGCTCTCACAATTTACACCAATGCTAAGCGTGCTGTGAGACATGCAAAGGATGCTGGCATTGATGCACAAGGATTTGGGGATTTGCAGCAGTAGATGCAGTTGGGTATGCAACGGTCGTTCCATGCCAACTGCATCTGGTGTTGCAAATCCCCAAATCCTTGTGCATCAATGCCAGCATCCTTTGCATGTCTCACAGCACGCTTAGCATTGGTGTAAATTGTGAGAGCAAATCCTATTTCTTTTCTGGCTGCCTTATAGGCAGAAGCAAGCTCCTTATTGAAATTGTGCAAGTTTCCCAAACTCCTTTTGAAGTTAACCATTTCGGACGAAAGAGATGAGAGTGAGGATTAGGGTTTCGATTGGATCAGTTATGGACGAAAGAGATGAGATAGGGTATGAGGTTTTGATTTGTATTGATGTACCGCTGATCTTAAATGACTATGGTTTTTTTTGATCTGTCTCAAAGAATGGGCCGGGTCTTGAACACTCCGGATTCTACTATGACCCGACCCATGTACTTGCTATTACAAAAATAAAAGGGATAAAAAAGGTAAAATTCTAACCCAAAAAAAATTGGTATCATCCTAAAAAAAATGTTAATTTACAAATAAATTTGCGATCTAACTAAATCTAATCTAAATAATAAAAAAAGGAGGAATGGAACTTAAAAAAAAAAAAAAACAAAGTTTTAACAAGAAAAAAGACAACATAAAATTGTTGTAGAAGAGAGAAATCAATAGATCTCGTCTATCTAAATAATAATTTTTTTTTTTTTAAAAGATCAACCAAAACGACCACGTAAAAATGTTGTAGAAGGGAGAGACAAACAGATCTGTGCCAACTAAATGGCATTTATAAAAAAACACAATTTTTTAAAAAATCAAGCAAAACGACCATATAAAATTGTAGCAAAAGGGAGAAATTTCTTTGATTTCCATTGAAAAACTCGGATCTAGTTTCAACAACAAAAAAAAACACAACTTAGTTAAAAATCAAATAAGAATAAAAACAGAGATGAAAATAAAGGAGAAAGAAGGATAGATCCAAATCAGGAGAGTGTGTCTCTCCATAATGGTTGTTTTCCGATAGGTTGTGGTGTTGTTTGATTTGTGACATGAGGTTGGGAATATATGAGAGATTTGTGTGTGAATAGGGAGAAGAGTTTATCATGGTTGTTGGAGGATTTGTTGTTGGATTTGTGAGCAGAGAGAAGAAAGAAACACAGAGAGGGAGGGCACATGTCGTGTTACGTTACATATCCGCGCCACAACACTCGTCTCACTTGTGCACCATAAAATTACTGTTTTTCAATTGTAAAAGAGTAACTATTTTCAAATGCGTAAATATATACCTTAGTCTTCGTATTGCAGAGAAGTTGTAGTCATTTTACTATTAATTTTCTCTGTTTGTTTTATTTATCTATACTAGCTATCTCTGATTCTGATATTAGTTTATCACTGTCACAGCCAAACTTGTCCCTGTTGGGTACGGTATCAAGAAACTTCAAATTATGCTTACTATTGTGGATGATCTTGTTTCCGTCGACAATATGGTTGAGGATTATCTTACTGTTGAGCCCATCAACGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAACAAAATCTGTAAGTAA

Protein sequence

>MS.gene048096.t1

MAVTFYNLKAESGLKKLDEYLLTRSYITGYQASKDDITVYSALPSVPSYEYGNVARWYKHIDALLRISGVSGEGSGVTVESSLVAEDVVATPPVSDTKAAEDDDDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVQLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKICK