Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37588.t1 | XP_003617173.1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 5.00E-81 | 310.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37588.t1 | Q84WM9 | 71.9 | 228 | 58 | 1 | 1 | 222 | 1 | 228 | 4.6e-59 | 229.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37588.t1 | B7FMR1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 3.6e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene37588 | 0.829811 | 4.18E-55 | -1.69E-46 |
| MS.gene054937 | MS.gene37588 | 0.804387 | 2.21E-49 | -1.69E-46 |
| MS.gene057052 | MS.gene37588 | 0.993297 | 9.02E-199 | -1.69E-46 |
| MS.gene060574 | MS.gene37588 | 0.830056 | 3.64E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37588 | MS.gene39764 | PPI |
| MS.gene37588 | MS.gene016914 | PPI |
| MS.gene043773 | MS.gene37588 | PPI |
| MS.gene37588 | MS.gene81545 | PPI |
| MS.gene37588 | MS.gene73243 | PPI |
| MS.gene37588 | MS.gene048096 | PPI |
| MS.gene036405 | MS.gene37588 | PPI |
| MS.gene37588 | MS.gene057052 | PPI |
| MS.gene37588 | MS.gene92572 | PPI |
| MS.gene37588 | MS.gene037669 | PPI |
| MS.gene37588 | MS.gene68663 | PPI |
| MS.gene016914 | MS.gene37588 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37588.t1 | MTR_5g088660 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 5.55e-156 | 431 |
| MS.gene37588.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 5.57e-76 | 229 |
| MS.gene37588.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 1.24e-75 | 229 |
| MS.gene37588.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 5.51e-74 | 224 |
| MS.gene37588.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 7.73e-74 | 224 |
| MS.gene37588.t1 | MTR_2g461200 | 55.556 | 180 | 71 | 4 | 1 | 171 | 1 | 180 | 7.73e-37 | 127 |
| MS.gene37588.t1 | MTR_5g088685 | 90.698 | 43 | 4 | 0 | 129 | 171 | 7 | 49 | 6.43e-21 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37588.t1 | AT5G12110 | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 8.98e-100 | 289 |
| MS.gene37588.t1 | AT5G19510 | 74.107 | 224 | 56 | 2 | 1 | 222 | 1 | 224 | 1.55e-90 | 266 |
| MS.gene37588.t1 | AT2G18110 | 58.079 | 229 | 84 | 4 | 5 | 222 | 4 | 231 | 1.72e-72 | 220 |
| MS.gene37588.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 3.69e-69 | 211 |
| MS.gene37588.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 8.57e-69 | 212 |
Find 50 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGACATACTCGTTAAT+TGG | 0.274565 | 5.3:-71464889 | None:intergenic |
| TTAGCAGGTGCTCCTGCAGC+TGG | 0.312184 | 5.3:-71462825 | None:intergenic |
| TTACTCTCTTTCTTCTTTGC+GGG | 0.314961 | 5.3:-71464345 | None:intergenic |
| GATGATGATCTTGACCTCTT+TGG | 0.382817 | 5.3:+71464267 | MS.gene37588:CDS |
| ACATGCTCCCCAGGTTAAAC+CGG | 0.384492 | 5.3:-71464640 | None:intergenic |
| TCCCTCAATGATTTCCTCTC+TGG | 0.387083 | 5.3:+71462153 | MS.gene37588:CDS |
| TTGAAATTCCCGGTTTAACC+TGG | 0.398982 | 5.3:+71464631 | MS.gene37588:CDS |
| CTTACTCTCTTTCTTCTTTG+CGG | 0.404225 | 5.3:-71464346 | None:intergenic |
| GTTCGCAGCGTTGAAATTCC+CGG | 0.412225 | 5.3:+71464621 | MS.gene37588:CDS |
| CAAAGTGTATGGATATGTTT+CGG | 0.431607 | 5.3:+71462556 | MS.gene37588:CDS |
| AAGGATGATATCAAAGTGTA+TGG | 0.446962 | 5.3:+71462545 | MS.gene37588:CDS |
| TAAGAAGGCAGCAGAGGAAA+GGG | 0.453012 | 5.3:+71464308 | MS.gene37588:CDS |
| AGATACAAGATCGTCAATAA+TGG | 0.472820 | 5.3:-71464830 | None:intergenic |
| AGTGGAAGTGCTCCAGCTGC+AGG | 0.481359 | 5.3:+71462813 | MS.gene37588:CDS |
| TGCATTTGTTACAGCCAAGC+TGG | 0.491896 | 5.3:+71464765 | MS.gene37588:intron |
| AAGCTGGTTGCTGTTGGATA+CGG | 0.492710 | 5.3:+71464781 | MS.gene37588:CDS |
| TCCAGAGAGGAAATCATTGA+GGG | 0.494384 | 5.3:-71462154 | None:intergenic |
| TGAGACAGACATGAAGAAGC+TGG | 0.511507 | 5.3:+71464590 | MS.gene37588:CDS |
| TGAAACAGAGGAGGATAAGA+AGG | 0.514826 | 5.3:+71464293 | MS.gene37588:CDS |
| ATAAGAAGGCAGCAGAGGAA+AGG | 0.514986 | 5.3:+71464307 | MS.gene37588:CDS |
| TCATCATCATCTTCAGCAGC+AGG | 0.517729 | 5.3:-71464252 | None:intergenic |
| ATGCGACAATGTCACAGCTC+TGG | 0.527719 | 5.3:-71464906 | None:intergenic |
| ATGTCTGTCTCATCATCCCA+TGG | 0.532053 | 5.3:-71464579 | None:intergenic |
| TTCTGCTTGATGTTAAGCCA+TGG | 0.537433 | 5.3:+71464562 | MS.gene37588:CDS |
| TCTCTTCACATCTTGCTGCA+AGG | 0.539260 | 5.3:+71462627 | MS.gene37588:CDS |
| TGAAATTCCCGGTTTAACCT+GGG | 0.541002 | 5.3:+71464632 | MS.gene37588:CDS |
| TGGCTTAACATCAAGCAGAA+TGG | 0.546092 | 5.3:-71464559 | None:intergenic |
| AGACATGAAGAAGCTGGAAG+AGG | 0.547223 | 5.3:+71464596 | MS.gene37588:CDS |
| TTCCAGAGAGGAAATCATTG+AGG | 0.548339 | 5.3:-71462155 | None:intergenic |
| GAGATACATACAGCTTTAGC+AGG | 0.553332 | 5.3:-71462840 | None:intergenic |
| CTGTGAGTCTTTCTTCAATG+AGG | 0.560347 | 5.3:-71464861 | None:intergenic |
| ATCGTACCAACCAGCAACAT+TGG | 0.561284 | 5.3:-71462600 | None:intergenic |
| CTCAGATCTTCACACAGAAG+AGG | 0.570425 | 5.3:+71462122 | MS.gene37588:CDS |
| ACATTGGCAAAAGCATCACT+TGG | 0.572710 | 5.3:-71462584 | None:intergenic |
| TATTGACGATCTTGTATCTG+TGG | 0.575194 | 5.3:+71464834 | MS.gene37588:CDS |
| GGAGGATAAGAAGGCAGCAG+AGG | 0.581848 | 5.3:+71464302 | MS.gene37588:CDS |
| TCAGATCTTCACACAGAAGA+GGG | 0.583876 | 5.3:+71462123 | MS.gene37588:CDS |
| GCTCAAGGTGTGAAATTCAG+TGG | 0.585505 | 5.3:+71462795 | MS.gene37588:CDS |
| AGTTTCCCTGGAAAAGCTCA+AGG | 0.588553 | 5.3:+71462780 | MS.gene37588:intron |
| TCTGCTTGATGTTAAGCCAT+GGG | 0.593895 | 5.3:+71464563 | MS.gene37588:CDS |
| CATGCTCCCCAGGTTAAACC+GGG | 0.597168 | 5.3:-71464639 | None:intergenic |
| ACAGCCAAGCTGGTTGCTGT+TGG | 0.600555 | 5.3:+71464775 | MS.gene37588:intron |
| TTCTGTGTGAAGATCTGAGA+AGG | 0.604138 | 5.3:-71462118 | None:intergenic |
| GAAATTCCCGGTTTAACCTG+GGG | 0.605534 | 5.3:+71464633 | MS.gene37588:CDS |
| CCTCTGTTTCATCACCAAAG+AGG | 0.617705 | 5.3:-71464281 | None:intergenic |
| GAAGGCAGCAGAGGAAAGGG+AGG | 0.617890 | 5.3:+71464311 | MS.gene37588:CDS |
| GTATCCAACAGCAACCAGCT+TGG | 0.624167 | 5.3:-71464779 | None:intergenic |
| ATTCAGGGATCAATTGACAA+AGG | 0.634362 | 5.3:+71462526 | MS.gene37588:intron |
| CCTCTTTGGTGATGAAACAG+AGG | 0.645851 | 5.3:+71464281 | MS.gene37588:CDS |
| CTTTGGTGATGAAACAGAGG+AGG | 0.675786 | 5.3:+71464284 | MS.gene37588:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTTTATAAA+AGG | - | chr5.3:71464715-71464734 | None:intergenic | 0.0% |
| !! | AATATAAAGATCAATAATTA+AGG | - | chr5.3:71462679-71462698 | None:intergenic | 10.0% |
| !! | AATTTCAATAATAAAATTGT+TGG | - | chr5.3:71463733-71463752 | None:intergenic | 10.0% |
| !! | TTTATATTGAAATATGAATT+TGG | + | chr5.3:71462691-71462710 | MS.gene37588:intron | 10.0% |
| !! | AAAATTACAAAATGTCTTCT+AGG | - | chr5.3:71463568-71463587 | None:intergenic | 20.0% |
| !! | AACACGAAAAATTAAAATTG+AGG | - | chr5.3:71462866-71462885 | None:intergenic | 20.0% |
| !! | AATCATTGCATGTTTATTAT+AGG | + | chr5.3:71463853-71463872 | MS.gene37588:intron | 20.0% |
| !! | ACACGAAAAATTAAAATTGA+GGG | - | chr5.3:71462865-71462884 | None:intergenic | 20.0% |
| !! | ATTCGAATCAATAAAATAGA+AGG | - | chr5.3:71462313-71462332 | None:intergenic | 20.0% |
| !! | CATGTTTATTATAGGAAATT+AGG | + | chr5.3:71463861-71463880 | MS.gene37588:intron | 20.0% |
| !! | CTGGAAAAAAATATATTTCT+GGG | + | chr5.3:71462172-71462191 | MS.gene37588:CDS | 20.0% |
| !! | GTTATTGTCAATTGTAAATA+TGG | + | chr5.3:71463376-71463395 | MS.gene37588:intron | 20.0% |
| !! | TAAAAAAAGTAGAAATTGAG+AGG | - | chr5.3:71462210-71462229 | None:intergenic | 20.0% |
| !! | TCTGGAAAAAAATATATTTC+TGG | + | chr5.3:71462171-71462190 | MS.gene37588:CDS | 20.0% |
| !!! | AAATATATTTTTTTCCAGAG+AGG | - | chr5.3:71462170-71462189 | None:intergenic | 20.0% |
| !!! | CATCTAACATAATTTGAAAT+TGG | + | chr5.3:71463046-71463065 | MS.gene37588:intron | 20.0% |
| !!! | GAAATAAAAATAGAGTACTT+TGG | - | chr5.3:71463680-71463699 | None:intergenic | 20.0% |
| !!! | GAGTCTTTGATTTTATTTAT+TGG | + | chr5.3:71463496-71463515 | MS.gene37588:intron | 20.0% |
| !!! | TCATTAAGTGATATTTTTAC+AGG | + | chr5.3:71464525-71464544 | MS.gene37588:intron | 20.0% |
| !!! | TCTATTTTATTGTTTTGAGT+GGG | + | chr5.3:71462460-71462479 | MS.gene37588:intron | 20.0% |
| !!! | TTCTATTTTATTGTTTTGAG+TGG | + | chr5.3:71462459-71462478 | MS.gene37588:intron | 20.0% |
| !!! | TTTTATTGTTTCTGAGATTT+GGG | + | chr5.3:71462255-71462274 | MS.gene37588:intron | 20.0% |
| !!! | TTTTTACTGTTTTGAGATTT+GGG | + | chr5.3:71462351-71462370 | MS.gene37588:intron | 20.0% |
| !!! | TTTTTATTGTTTCTGAGATT+TGG | + | chr5.3:71462254-71462273 | MS.gene37588:intron | 20.0% |
| !!! | TTTTTTACTGTTTTGAGATT+TGG | + | chr5.3:71462350-71462369 | MS.gene37588:intron | 20.0% |
| ! | AGAATACAAAATACTAGAGT+TGG | - | chr5.3:71463460-71463479 | None:intergenic | 25.0% |
| ! | AGAATTAATCTGGTAATTAG+TGG | + | chr5.3:71463523-71463542 | MS.gene37588:intron | 25.0% |
| ! | ATAAATAATCCACACGAAAA+AGG | + | chr5.3:71463609-71463628 | MS.gene37588:intron | 25.0% |
| ! | ATCATTGGAATTTATTTGTC+AGG | + | chr5.3:71464224-71464243 | MS.gene37588:intron | 25.0% |
| ! | CTACTAACTAATTTGATCAT+TGG | + | chr5.3:71464209-71464228 | MS.gene37588:intron | 25.0% |
| !! | ATTTGGGTTATTGAAATTCA+GGG | + | chr5.3:71462511-71462530 | MS.gene37588:intron | 25.0% |
| !! | CTTTCTGAAAATAAATGACT+AGG | - | chr5.3:71463180-71463199 | None:intergenic | 25.0% |
| !! | TATTGGTCTAAGAATTAATC+TGG | + | chr5.3:71463513-71463532 | MS.gene37588:intron | 25.0% |
| !! | TTGATTCGAATTGAAAAGAT+TGG | + | chr5.3:71462322-71462341 | MS.gene37588:intron | 25.0% |
| !! | TTTTGACATGACATACTATA+AGG | + | chr5.3:71463975-71463994 | MS.gene37588:intron | 25.0% |
| !!! | CATTTTTCAGTAATATACTG+TGG | + | chr5.3:71462976-71462995 | MS.gene37588:intron | 25.0% |
| !!! | CTATTTTATTGTTTTGAGTG+GGG | + | chr5.3:71462461-71462480 | MS.gene37588:intron | 25.0% |
| !!! | GGTTTTTCAAATTCTATGTT+GGG | + | chr5.3:71462276-71462295 | MS.gene37588:intron | 25.0% |
| !!! | GGTTTTTTAGAGTAGTATTA+TGG | + | chr5.3:71463780-71463799 | MS.gene37588:intron | 25.0% |
| !!! | TTAAGTGATATTTTTACAGG+TGG | + | chr5.3:71464528-71464547 | MS.gene37588:intron | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | + | chr5.3:71462402-71462421 | MS.gene37588:intron | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | + | chr5.3:71462401-71462420 | MS.gene37588:intron | 25.0% |
| AAGGATGATATCAAAGTGTA+TGG | + | chr5.3:71462545-71462564 | MS.gene37588:CDS | 30.0% | |
| ACTTAAGATGAAAAGCTTAC+AGG | - | chr5.3:71463131-71463150 | None:intergenic | 30.0% | |
| AGATACAAGATCGTCAATAA+TGG | - | chr5.3:71464833-71464852 | None:intergenic | 30.0% | |
| CAAAGTGTATGGATATGTTT+CGG | + | chr5.3:71462556-71462575 | MS.gene37588:CDS | 30.0% | |
| GAAAAGCTTACAGGTTTAAA+GGG | - | chr5.3:71463122-71463141 | None:intergenic | 30.0% | |
| GCTAAGTTAGTAACTATGAA+AGG | + | chr5.3:71464065-71464084 | MS.gene37588:intron | 30.0% | |
| GTATTTCTTAGAGTAACACT+GGG | + | chr5.3:71462951-71462970 | MS.gene37588:intron | 30.0% | |
| TGAAAAGCTTACAGGTTTAA+AGG | - | chr5.3:71463123-71463142 | None:intergenic | 30.0% | |
| TGTATTTCTTAGAGTAACAC+TGG | + | chr5.3:71462950-71462969 | MS.gene37588:intron | 30.0% | |
| ! | AGTAGAAATTGAGAGGATTT+TGG | - | chr5.3:71462203-71462222 | None:intergenic | 30.0% |
| ! | GATTTGGGTTATTGAAATTC+AGG | + | chr5.3:71462510-71462529 | MS.gene37588:intron | 30.0% |
| ! | GTAGAAATTGAGAGGATTTT+GGG | - | chr5.3:71462202-71462221 | None:intergenic | 30.0% |
| ! | TAGAAATTGAGAGGATTTTG+GGG | - | chr5.3:71462201-71462220 | None:intergenic | 30.0% |
| !! | GGGTTTTTCAAATTCTATGT+TGG | + | chr5.3:71462275-71462294 | MS.gene37588:intron | 30.0% |
| !!! | TTTTGTATGATTAGTTTCCC+TGG | + | chr5.3:71462768-71462787 | MS.gene37588:intron | 30.0% |
| ACCTAAACTTCACAACAACT+TGG | - | chr5.3:71464152-71464171 | None:intergenic | 35.0% | |
| ACTTGGTAAACATCTCTATC+AGG | - | chr5.3:71464032-71464051 | None:intergenic | 35.0% | |
| AGAAAAGTAGTCATTGAGCT+TGG | + | chr5.3:71464428-71464447 | MS.gene37588:intron | 35.0% | |
| AGTTGTATTGAAGTCACTGA+AGG | + | chr5.3:71464184-71464203 | MS.gene37588:intron | 35.0% | |
| ATTCAGGGATCAATTGACAA+AGG | + | chr5.3:71462526-71462545 | MS.gene37588:intron | 35.0% | |
| CCTAAACTTCACAACAACTT+GGG | - | chr5.3:71464151-71464170 | None:intergenic | 35.0% | |
| CTTACTCTCTTTCTTCTTTG+CGG | - | chr5.3:71464349-71464368 | None:intergenic | 35.0% | |
| GACATGACATACTATAAGGA+TGG | + | chr5.3:71463979-71463998 | MS.gene37588:intron | 35.0% | |
| GCAATGATTAAAAACATGCG+TGG | - | chr5.3:71463842-71463861 | None:intergenic | 35.0% | |
| TAGCTAACAACTATGTCACT+TGG | - | chr5.3:71464049-71464068 | None:intergenic | 35.0% | |
| TATTGACGATCTTGTATCTG+TGG | + | chr5.3:71464834-71464853 | MS.gene37588:CDS | 35.0% | |
| TCACGTAGAGTTGTATTGTA+TGG | + | chr5.3:71462914-71462933 | MS.gene37588:intron | 35.0% | |
| TTACTCTCTTTCTTCTTTGC+GGG | - | chr5.3:71464348-71464367 | None:intergenic | 35.0% | |
| !! | AAGTATTGTCCTTTTTCGTG+TGG | - | chr5.3:71463621-71463640 | None:intergenic | 35.0% |
| !! | GGGTTTTTCAAATTCTATGC+TGG | + | chr5.3:71462371-71462390 | MS.gene37588:intron | 35.0% |
| !! | TTGTTTTGCACTTTTGAGCA+TGG | - | chr5.3:71463425-71463444 | None:intergenic | 35.0% |
| AACCATCCATGTTGCTATCT+TGG | - | chr5.3:71463764-71463783 | None:intergenic | 40.0% | |
| CAATTCCTATGTGACTGAAG+TGG | + | chr5.3:71464737-71464756 | MS.gene37588:intron | 40.0% | |
| CCCAAGTTGTTGTGAAGTTT+AGG | + | chr5.3:71464148-71464167 | MS.gene37588:intron | 40.0% | |
| CTATCAGGTTCAACTAACAC+AGG | - | chr5.3:71464017-71464036 | None:intergenic | 40.0% | |
| CTCTGGACATACTCGTTAAT+TGG | - | chr5.3:71464892-71464911 | None:intergenic | 40.0% | |
| CTGTGAGTCTTTCTTCAATG+AGG | - | chr5.3:71464864-71464883 | None:intergenic | 40.0% | |
| GATGATGATCTTGACCTCTT+TGG | + | chr5.3:71464267-71464286 | MS.gene37588:CDS | 40.0% | |
| TCAGATCTTCACACAGAAGA+GGG | + | chr5.3:71462123-71462142 | MS.gene37588:CDS | 40.0% | |
| TCCAGAGAGGAAATCATTGA+GGG | - | chr5.3:71462157-71462176 | None:intergenic | 40.0% | |
| TCTGCTTGATGTTAAGCCAT+GGG | + | chr5.3:71464563-71464582 | MS.gene37588:CDS | 40.0% | |
| TGAAACAGAGGAGGATAAGA+AGG | + | chr5.3:71464293-71464312 | MS.gene37588:CDS | 40.0% | |
| TGAAATTCCCGGTTTAACCT+GGG | + | chr5.3:71464632-71464651 | MS.gene37588:CDS | 40.0% | |
| TGGCTTAACATCAAGCAGAA+TGG | - | chr5.3:71464562-71464581 | None:intergenic | 40.0% | |
| TTCCAGAGAGGAAATCATTG+AGG | - | chr5.3:71462158-71462177 | None:intergenic | 40.0% | |
| TTCTGCTTGATGTTAAGCCA+TGG | + | chr5.3:71464562-71464581 | MS.gene37588:CDS | 40.0% | |
| TTCTGTGTGAAGATCTGAGA+AGG | - | chr5.3:71462121-71462140 | None:intergenic | 40.0% | |
| TTGAAATTCCCGGTTTAACC+TGG | + | chr5.3:71464631-71464650 | MS.gene37588:CDS | 40.0% | |
| TTTCAGCCAAGATAGCAACA+TGG | + | chr5.3:71463755-71463774 | MS.gene37588:intron | 40.0% | |
| ! | GAGATACATACAGCTTTAGC+AGG | - | chr5.3:71462843-71462862 | None:intergenic | 40.0% |
| ! | TTTTAACATACATGCTCCCC+AGG | - | chr5.3:71464652-71464671 | None:intergenic | 40.0% |
| !! | ACATTGGCAAAAGCATCACT+TGG | - | chr5.3:71462587-71462606 | None:intergenic | 40.0% |
| ACAAGCCACTTCAGTCACAT+AGG | - | chr5.3:71464745-71464764 | None:intergenic | 45.0% | |
| AGAAAGGAGCTCTACAGTAC+TGG | - | chr5.3:71463810-71463829 | None:intergenic | 45.0% | |
| AGACATGAAGAAGCTGGAAG+AGG | + | chr5.3:71464596-71464615 | MS.gene37588:CDS | 45.0% | |
| AGCCAAGATAGCAACATGGA+TGG | + | chr5.3:71463759-71463778 | MS.gene37588:intron | 45.0% | |
| AGTTTCCCTGGAAAAGCTCA+AGG | + | chr5.3:71462780-71462799 | MS.gene37588:intron | 45.0% | |
| ATAAGAAGGCAGCAGAGGAA+AGG | + | chr5.3:71464307-71464326 | MS.gene37588:CDS | 45.0% | |
| ATCGTACCAACCAGCAACAT+TGG | - | chr5.3:71462603-71462622 | None:intergenic | 45.0% | |
| ATGTCTGTCTCATCATCCCA+TGG | - | chr5.3:71464582-71464601 | None:intergenic | 45.0% | |
| CCTCTGTTTCATCACCAAAG+AGG | - | chr5.3:71464284-71464303 | None:intergenic | 45.0% | |
| CTCAGATCTTCACACAGAAG+AGG | + | chr5.3:71462122-71462141 | MS.gene37588:CDS | 45.0% | |
| GAAATTCCCGGTTTAACCTG+GGG | + | chr5.3:71464633-71464652 | MS.gene37588:CDS | 45.0% | |
| GCTCAAGGTGTGAAATTCAG+TGG | + | chr5.3:71462795-71462814 | MS.gene37588:CDS | 45.0% | |
| TAAGAAGGCAGCAGAGGAAA+GGG | + | chr5.3:71464308-71464327 | MS.gene37588:CDS | 45.0% | |
| TCATCATCATCTTCAGCAGC+AGG | - | chr5.3:71464255-71464274 | None:intergenic | 45.0% | |
| TCCCTCAATGATTTCCTCTC+TGG | + | chr5.3:71462153-71462172 | MS.gene37588:CDS | 45.0% | |
| TCTCTTCACATCTTGCTGCA+AGG | + | chr5.3:71462627-71462646 | MS.gene37588:CDS | 45.0% | |
| TGAGACAGACATGAAGAAGC+TGG | + | chr5.3:71464590-71464609 | MS.gene37588:CDS | 45.0% | |
| TGCGTGGATCTCATCAAGAA+AGG | - | chr5.3:71463826-71463845 | None:intergenic | 45.0% | |
| ! | AAGCTGGTTGCTGTTGGATA+CGG | + | chr5.3:71464781-71464800 | MS.gene37588:CDS | 45.0% |
| ! | CTTTTGCCAATGTTGCTGGT+TGG | + | chr5.3:71462594-71462613 | MS.gene37588:CDS | 45.0% |
| ! | GATGCTTTTGCCAATGTTGC+TGG | + | chr5.3:71462590-71462609 | MS.gene37588:CDS | 45.0% |
| ! | TCACACCTTGAGCTTTTCCA+GGG | - | chr5.3:71462788-71462807 | None:intergenic | 45.0% |
| ! | TGCATTTGTTACAGCCAAGC+TGG | + | chr5.3:71464765-71464784 | MS.gene37588:intron | 45.0% |
| ! | TTCACACCTTGAGCTTTTCC+AGG | - | chr5.3:71462789-71462808 | None:intergenic | 45.0% |
| !! | CCTCTTTGGTGATGAAACAG+AGG | + | chr5.3:71464281-71464300 | MS.gene37588:CDS | 45.0% |
| !! | CTTTGGTGATGAAACAGAGG+AGG | + | chr5.3:71464284-71464303 | MS.gene37588:CDS | 45.0% |
| ACATGCTCCCCAGGTTAAAC+CGG | - | chr5.3:71464643-71464662 | None:intergenic | 50.0% | |
| ATGCGACAATGTCACAGCTC+TGG | - | chr5.3:71464909-71464928 | None:intergenic | 50.0% | |
| GTATCCAACAGCAACCAGCT+TGG | - | chr5.3:71464782-71464801 | None:intergenic | 50.0% | |
| ! | GTTCGCAGCGTTGAAATTCC+CGG | + | chr5.3:71464621-71464640 | MS.gene37588:CDS | 50.0% |
| ACAGCCAAGCTGGTTGCTGT+TGG | + | chr5.3:71464775-71464794 | MS.gene37588:intron | 55.0% | |
| CATGCTCCCCAGGTTAAACC+GGG | - | chr5.3:71464642-71464661 | None:intergenic | 55.0% | |
| GGAGGATAAGAAGGCAGCAG+AGG | + | chr5.3:71464302-71464321 | MS.gene37588:CDS | 55.0% | |
| GAAGGCAGCAGAGGAAAGGG+AGG | + | chr5.3:71464311-71464330 | MS.gene37588:CDS | 60.0% | |
| TTAGCAGGTGCTCCTGCAGC+TGG | - | chr5.3:71462828-71462847 | None:intergenic | 60.0% | |
| !! | AGTGGAAGTGCTCCAGCTGC+AGG | + | chr5.3:71462813-71462832 | MS.gene37588:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 71462108 | 71464942 | 71462108 | ID=MS.gene37588 |
| chr5.3 | mRNA | 71462108 | 71464942 | 71462108 | ID=MS.gene37588.t1;Parent=MS.gene37588 |
| chr5.3 | exon | 71462108 | 71462193 | 71462108 | ID=MS.gene37588.t1.exon1;Parent=MS.gene37588.t1 |
| chr5.3 | CDS | 71462108 | 71462193 | 71462108 | ID=cds.MS.gene37588.t1;Parent=MS.gene37588.t1 |
| chr5.3 | exon | 71462532 | 71462648 | 71462532 | ID=MS.gene37588.t1.exon2;Parent=MS.gene37588.t1 |
| chr5.3 | CDS | 71462532 | 71462648 | 71462532 | ID=cds.MS.gene37588.t1;Parent=MS.gene37588.t1 |
| chr5.3 | exon | 71462782 | 71462851 | 71462782 | ID=MS.gene37588.t1.exon3;Parent=MS.gene37588.t1 |
| chr5.3 | CDS | 71462782 | 71462851 | 71462782 | ID=cds.MS.gene37588.t1;Parent=MS.gene37588.t1 |
| chr5.3 | exon | 71464246 | 71464363 | 71464246 | ID=MS.gene37588.t1.exon4;Parent=MS.gene37588.t1 |
| chr5.3 | CDS | 71464246 | 71464363 | 71464246 | ID=cds.MS.gene37588.t1;Parent=MS.gene37588.t1 |
| chr5.3 | exon | 71464547 | 71464660 | 71464547 | ID=MS.gene37588.t1.exon5;Parent=MS.gene37588.t1 |
| chr5.3 | CDS | 71464547 | 71464660 | 71464547 | ID=cds.MS.gene37588.t1;Parent=MS.gene37588.t1 |
| chr5.3 | exon | 71464779 | 71464942 | 71464779 | ID=MS.gene37588.t1.exon6;Parent=MS.gene37588.t1 |
| chr5.3 | CDS | 71464779 | 71464942 | 71464779 | ID=cds.MS.gene37588.t1;Parent=MS.gene37588.t1 |
| Gene Sequence |
| Protein sequence |
