Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92572.t1 | RHN74026.1 | 98.3 | 231 | 2 | 1 | 1 | 229 | 1 | 231 | 1.40E-81 | 312.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92572.t1 | P93447 | 80.3 | 229 | 42 | 1 | 1 | 229 | 1 | 226 | 1.2e-65 | 251.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92572.t1 | A0A072V7Q9 | 98.3 | 231 | 2 | 1 | 1 | 229 | 1 | 231 | 9.9e-82 | 312.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene92572 | 0.813338 | 2.69E-51 | -1.69E-46 |
| MS.gene049255 | MS.gene92572 | 0.81575 | 7.88E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene92572 | 0.819566 | 1.09E-52 | -1.69E-46 |
| MS.gene049411 | MS.gene92572 | 0.81474 | 1.32E-51 | -1.69E-46 |
| MS.gene049580 | MS.gene92572 | 0.836789 | 7.61E-57 | -1.69E-46 |
| MS.gene049857 | MS.gene92572 | 0.833444 | 5.31E-56 | -1.69E-46 |
| MS.gene049887 | MS.gene92572 | 0.846633 | 1.92E-59 | -1.69E-46 |
| MS.gene050085 | MS.gene92572 | 0.804401 | 2.20E-49 | -1.69E-46 |
| MS.gene050114 | MS.gene92572 | 0.803095 | 4.10E-49 | -1.69E-46 |
| MS.gene050277 | MS.gene92572 | 0.885982 | 5.08E-72 | -1.69E-46 |
| MS.gene050317 | MS.gene92572 | 0.822712 | 2.05E-53 | -1.69E-46 |
| MS.gene050320 | MS.gene92572 | 0.864565 | 1.11E-64 | -1.69E-46 |
| MS.gene050437 | MS.gene92572 | 0.81471 | 1.34E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene92572 | 0.81984 | 9.40E-53 | -1.69E-46 |
| MS.gene050752 | MS.gene92572 | 0.861098 | 1.30E-63 | -1.69E-46 |
| MS.gene050838 | MS.gene92572 | 0.930385 | 1.77E-93 | -1.69E-46 |
| MS.gene050916 | MS.gene92572 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene050955 | MS.gene92572 | 0.827548 | 1.47E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene92572 | 0.843394 | 1.44E-58 | -1.69E-46 |
| MS.gene051063 | MS.gene92572 | 0.875789 | 2.34E-68 | -1.69E-46 |
| MS.gene051233 | MS.gene92572 | 0.839574 | 1.46E-57 | -1.69E-46 |
| MS.gene051234 | MS.gene92572 | 0.850584 | 1.54E-60 | -1.69E-46 |
| MS.gene051245 | MS.gene92572 | 0.841481 | 4.63E-58 | -1.69E-46 |
| MS.gene051328 | MS.gene92572 | 0.815952 | 7.10E-52 | -1.69E-46 |
| MS.gene051330 | MS.gene92572 | 0.839291 | 1.73E-57 | -1.69E-46 |
| MS.gene051343 | MS.gene92572 | 0.827053 | 1.93E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene92572 | 0.806263 | 8.96E-50 | -1.69E-46 |
| MS.gene051451 | MS.gene92572 | 0.81935 | 1.22E-52 | -1.69E-46 |
| MS.gene051642 | MS.gene92572 | 0.815886 | 7.35E-52 | -1.69E-46 |
| MS.gene051687 | MS.gene92572 | 0.833821 | 4.28E-56 | -1.69E-46 |
| MS.gene051746 | MS.gene92572 | 0.91652 | 1.61E-85 | -1.69E-46 |
| MS.gene051748 | MS.gene92572 | 0.915428 | 5.96E-85 | -1.69E-46 |
| MS.gene051756 | MS.gene92572 | 0.878227 | 3.33E-69 | -1.69E-46 |
| MS.gene051757 | MS.gene92572 | 0.807226 | 5.60E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene92572 | 0.907216 | 6.44E-81 | -1.69E-46 |
| MS.gene051885 | MS.gene92572 | 0.848603 | 5.52E-60 | -1.69E-46 |
| MS.gene05188 | MS.gene92572 | 0.802199 | 6.28E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene92572 | 0.925625 | 1.42E-90 | -1.69E-46 |
| MS.gene052072 | MS.gene92572 | 0.812847 | 3.45E-51 | -1.69E-46 |
| MS.gene052133 | MS.gene92572 | 0.838683 | 2.49E-57 | -1.69E-46 |
| MS.gene052202 | MS.gene92572 | 0.817418 | 3.33E-52 | -1.69E-46 |
| MS.gene052286 | MS.gene92572 | 0.814623 | 1.40E-51 | -1.69E-46 |
| MS.gene052296 | MS.gene92572 | 0.81949 | 1.13E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene92572 | 0.817847 | 2.67E-52 | -1.69E-46 |
| MS.gene052479 | MS.gene92572 | 0.812545 | 4.02E-51 | -1.69E-46 |
| MS.gene052818 | MS.gene92572 | -0.81484 | 1.26E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene92572 | 0.904934 | 7.30E-80 | -1.69E-46 |
| MS.gene053058 | MS.gene92572 | 0.819072 | 1.41E-52 | -1.69E-46 |
| MS.gene053109 | MS.gene92572 | 0.880287 | 6.22E-70 | -1.69E-46 |
| MS.gene053381 | MS.gene92572 | 0.822881 | 1.87E-53 | -1.69E-46 |
| MS.gene053581 | MS.gene92572 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene053590 | MS.gene92572 | 0.802009 | 6.88E-49 | -1.69E-46 |
| MS.gene053786 | MS.gene92572 | 0.805255 | 1.46E-49 | -1.69E-46 |
| MS.gene05380 | MS.gene92572 | 0.815331 | 9.76E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene92572 | 0.871851 | 4.99E-67 | -1.69E-46 |
| MS.gene054250 | MS.gene92572 | 0.834658 | 2.64E-56 | -1.69E-46 |
| MS.gene054403 | MS.gene92572 | 0.858487 | 7.96E-63 | -1.69E-46 |
| MS.gene05469 | MS.gene92572 | 0.802027 | 6.82E-49 | -1.69E-46 |
| MS.gene054937 | MS.gene92572 | 0.829511 | 4.94E-55 | -1.69E-46 |
| MS.gene055162 | MS.gene92572 | 0.828156 | 1.05E-54 | -1.69E-46 |
| MS.gene055174 | MS.gene92572 | 0.833282 | 5.83E-56 | -1.69E-46 |
| MS.gene055424 | MS.gene92572 | 0.882939 | 6.84E-71 | -1.69E-46 |
| MS.gene055441 | MS.gene92572 | 0.80256 | 5.29E-49 | -1.69E-46 |
| MS.gene055555 | MS.gene92572 | 0.808524 | 2.97E-50 | -1.69E-46 |
| MS.gene055591 | MS.gene92572 | -0.815609 | 8.47E-52 | -1.69E-46 |
| MS.gene055780 | MS.gene92572 | 0.800341 | 1.51E-48 | -1.69E-46 |
| MS.gene055979 | MS.gene92572 | 0.800884 | 1.17E-48 | -1.69E-46 |
| MS.gene056043 | MS.gene92572 | -0.821273 | 4.41E-53 | -1.69E-46 |
| MS.gene056075 | MS.gene92572 | 0.902935 | 5.82E-79 | -1.69E-46 |
| MS.gene056432 | MS.gene92572 | 0.858048 | 1.08E-62 | -1.69E-46 |
| MS.gene056580 | MS.gene92572 | 0.842238 | 2.92E-58 | -1.69E-46 |
| MS.gene056601 | MS.gene92572 | 0.835006 | 2.16E-56 | -1.69E-46 |
| MS.gene056631 | MS.gene92572 | 0.865998 | 3.93E-65 | -1.69E-46 |
| MS.gene056752 | MS.gene92572 | 0.831199 | 1.91E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene92572 | 0.809301 | 2.03E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene92572 | 0.871243 | 7.93E-67 | -1.69E-46 |
| MS.gene057094 | MS.gene92572 | 0.924926 | 3.66E-90 | -1.69E-46 |
| MS.gene057140 | MS.gene92572 | 0.808998 | 2.35E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene92572 | 0.903903 | 2.14E-79 | -1.69E-46 |
| MS.gene057452 | MS.gene92572 | -0.816515 | 5.32E-52 | -1.69E-46 |
| MS.gene05769 | MS.gene92572 | 0.818201 | 2.22E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene92572 | 0.854423 | 1.24E-61 | -1.69E-46 |
| MS.gene05781 | MS.gene92572 | 0.827771 | 1.30E-54 | -1.69E-46 |
| MS.gene057890 | MS.gene92572 | -0.815503 | 8.94E-52 | -1.69E-46 |
| MS.gene057999 | MS.gene92572 | 0.844533 | 7.13E-59 | -1.69E-46 |
| MS.gene058054 | MS.gene92572 | 0.844379 | 7.84E-59 | -1.69E-46 |
| MS.gene058055 | MS.gene92572 | 0.871328 | 7.43E-67 | -1.69E-46 |
| MS.gene058074 | MS.gene92572 | 0.862927 | 3.58E-64 | -1.69E-46 |
| MS.gene05809 | MS.gene92572 | 0.80138 | 9.26E-49 | -1.69E-46 |
| MS.gene058238 | MS.gene92572 | 0.868705 | 5.35E-66 | -1.69E-46 |
| MS.gene058261 | MS.gene92572 | 0.80513 | 1.55E-49 | -1.69E-46 |
| MS.gene058646 | MS.gene92572 | 0.801295 | 9.63E-49 | -1.69E-46 |
| MS.gene058654 | MS.gene92572 | 0.829643 | 4.59E-55 | -1.69E-46 |
| MS.gene058852 | MS.gene92572 | 0.843172 | 1.65E-58 | -1.69E-46 |
| MS.gene058906 | MS.gene92572 | 0.870155 | 1.81E-66 | -1.69E-46 |
| MS.gene059146 | MS.gene92572 | 0.818229 | 2.19E-52 | -1.69E-46 |
| MS.gene059171 | MS.gene92572 | 0.872949 | 2.15E-67 | -1.69E-46 |
| MS.gene059227 | MS.gene92572 | 0.8422 | 2.99E-58 | -1.69E-46 |
| MS.gene059726 | MS.gene92572 | 0.833181 | 6.18E-56 | -1.69E-46 |
| MS.gene059787 | MS.gene92572 | 0.81499 | 1.16E-51 | -1.69E-46 |
| MS.gene059898 | MS.gene92572 | 0.838312 | 3.10E-57 | -1.69E-46 |
| MS.gene06001 | MS.gene92572 | 0.916737 | 1.24E-85 | -1.69E-46 |
| MS.gene06011 | MS.gene92572 | 0.859134 | 5.10E-63 | -1.69E-46 |
| MS.gene060463 | MS.gene92572 | 0.856554 | 2.97E-62 | -1.69E-46 |
| MS.gene060465 | MS.gene92572 | 0.858298 | 9.07E-63 | -1.69E-46 |
| MS.gene060574 | MS.gene92572 | 0.814066 | 1.86E-51 | -1.69E-46 |
| MS.gene060702 | MS.gene92572 | 0.816482 | 5.41E-52 | -1.69E-46 |
| MS.gene060763 | MS.gene92572 | 0.869816 | 2.33E-66 | -1.69E-46 |
| MS.gene061145 | MS.gene92572 | 0.870836 | 1.08E-66 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33103 | MS.gene92572 | PPI |
| MS.gene074184 | MS.gene92572 | PPI |
| MS.gene006000 | MS.gene92572 | PPI |
| MS.gene041771 | MS.gene92572 | PPI |
| MS.gene34006 | MS.gene92572 | PPI |
| MS.gene016105 | MS.gene92572 | PPI |
| MS.gene001097 | MS.gene92572 | PPI |
| MS.gene016914 | MS.gene92572 | PPI |
| MS.gene54763 | MS.gene92572 | PPI |
| MS.gene92572 | MS.gene037669 | PPI |
| MS.gene47052 | MS.gene92572 | PPI |
| MS.gene043773 | MS.gene92572 | PPI |
| MS.gene041769 | MS.gene92572 | PPI |
| MS.gene057052 | MS.gene92572 | PPI |
| MS.gene041766 | MS.gene92572 | PPI |
| MS.gene92572 | MS.gene68663 | PPI |
| MS.gene036405 | MS.gene92572 | PPI |
| MS.gene39764 | MS.gene92572 | PPI |
| MS.gene058469 | MS.gene92572 | PPI |
| MS.gene37588 | MS.gene92572 | PPI |
| MS.gene074183 | MS.gene92572 | PPI |
| MS.gene005994 | MS.gene92572 | PPI |
| MS.gene73243 | MS.gene92572 | PPI |
| MS.gene048096 | MS.gene92572 | PPI |
| MS.gene47051 | MS.gene92572 | PPI |
| MS.gene34008 | MS.gene92572 | PPI |
| MS.gene68663 | MS.gene92572 | PPI |
| MS.gene005996 | MS.gene92572 | PPI |
| MS.gene001098 | MS.gene92572 | PPI |
| MS.gene81545 | MS.gene92572 | PPI |
| MS.gene54761 | MS.gene92572 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92572.t1 | MTR_2g461200 | 96.970 | 231 | 5 | 1 | 1 | 229 | 1 | 231 | 8.83e-161 | 444 |
| MS.gene92572.t1 | MTR_2g461200 | 96.970 | 231 | 5 | 1 | 1 | 229 | 1 | 231 | 9.90e-161 | 445 |
| MS.gene92572.t1 | MTR_4g019610 | 96.537 | 231 | 6 | 1 | 1 | 229 | 1 | 231 | 1.16e-159 | 441 |
| MS.gene92572.t1 | MTR_4g019610 | 96.537 | 231 | 6 | 1 | 1 | 229 | 1 | 231 | 2.50e-159 | 442 |
| MS.gene92572.t1 | MTR_2g461200 | 94.444 | 180 | 8 | 1 | 1 | 178 | 1 | 180 | 4.19e-95 | 276 |
| MS.gene92572.t1 | MTR_5g088660 | 59.825 | 229 | 86 | 3 | 1 | 229 | 1 | 223 | 3.91e-81 | 242 |
| MS.gene92572.t1 | MTR_5g088685 | 75.000 | 48 | 12 | 0 | 131 | 178 | 2 | 49 | 6.13e-18 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92572.t1 | AT2G18110 | 80.263 | 228 | 42 | 2 | 5 | 229 | 4 | 231 | 1.41e-111 | 320 |
| MS.gene92572.t1 | AT1G30230 | 77.193 | 228 | 49 | 2 | 5 | 229 | 4 | 231 | 5.03e-106 | 305 |
| MS.gene92572.t1 | AT1G30230 | 77.193 | 228 | 49 | 2 | 5 | 229 | 4 | 231 | 1.37e-105 | 305 |
| MS.gene92572.t1 | AT5G12110 | 61.304 | 230 | 86 | 3 | 1 | 229 | 1 | 228 | 1.96e-78 | 236 |
| MS.gene92572.t1 | AT5G19510 | 62.009 | 229 | 82 | 2 | 1 | 229 | 1 | 224 | 6.47e-73 | 221 |
Find 59 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGTCTGTAGTGGTGTTTC+TGG | 0.150024 | 4.2:+82683880 | MS.gene92572:intron |
| TTCAGTTGGAAGGGTTGTTC+TGG | 0.178098 | 4.2:+82684275 | MS.gene92572:CDS |
| TCAGTTCCATCATATGAATA+TGG | 0.245099 | 4.2:+82683660 | MS.gene92572:CDS |
| TCTTGTTTCCGTCGACAATA+TGG | 0.332439 | 4.2:+82686697 | MS.gene92572:CDS |
| GCTGCCTTTGTGTCAGAAAC+TGG | 0.355924 | 4.2:-82683964 | None:intergenic |
| TCAGTTGGAAGGGTTGTTCT+GGG | 0.356979 | 4.2:+82684276 | MS.gene92572:CDS |
| TTCTTGATACCGTACCCAAC+AGG | 0.380470 | 4.2:-82686644 | None:intergenic |
| TATAACCTTAAGGCTGAATC+TGG | 0.393170 | 4.2:+82683455 | MS.gene92572:CDS |
| GAAGAAGGCAGCTGAGGAAC+GGG | 0.395604 | 4.2:+82684041 | MS.gene92572:CDS |
| GATGACGATGTTGATTTGTT+TGG | 0.410866 | 4.2:+82684000 | MS.gene92572:CDS |
| TCAAGCCAGATTCAGCCTTA+AGG | 0.411025 | 4.2:-82683460 | None:intergenic |
| TCAAATTATGCTTACTATTG+TGG | 0.416944 | 4.2:+82686670 | MS.gene92572:CDS |
| GGTGTTTCTGGTGAGGGATC+TGG | 0.436594 | 4.2:+82683892 | MS.gene92572:CDS |
| GCAGCAGCCGTGAAGGCATC+CGG | 0.445711 | 4.2:+82684063 | MS.gene92572:CDS |
| AGTCACATTCTATAACCTTA+AGG | 0.451347 | 4.2:+82683445 | MS.gene92572:CDS |
| ACTCTGGACATACTCGTTGA+TGG | 0.453826 | 4.2:-82686744 | None:intergenic |
| CAGTTCCATCATATGAATAT+GGG | 0.459928 | 4.2:+82683661 | MS.gene92572:CDS |
| GTACCCAACAGGGACAAGTT+TGG | 0.474254 | 4.2:-82686633 | None:intergenic |
| CAGCCAAACTTGTCCCTGTT+GGG | 0.476052 | 4.2:+82686630 | MS.gene92572:intron |
| TTCCGTCGACAATATGGTTG+AGG | 0.490036 | 4.2:+82686703 | MS.gene92572:CDS |
| TAATGTCATCCTTTGAAGCT+TGG | 0.497827 | 4.2:-82683617 | None:intergenic |
| AGCAGTGAGATCTGTTCAGT+TGG | 0.499725 | 4.2:+82684261 | MS.gene92572:CDS |
| ACATTCCCATATTCATATGA+TGG | 0.500557 | 4.2:-82683666 | None:intergenic |
| GTGAGATCTGTTCAGTTGGA+AGG | 0.509565 | 4.2:+82684265 | MS.gene92572:CDS |
| TGGAAAATCATCTGTACTGT+TGG | 0.509794 | 4.2:+82684192 | MS.gene92572:CDS |
| AGAAGAAGGCAGCTGAGGAA+CGG | 0.514292 | 4.2:+82684040 | MS.gene92572:CDS |
| TTCTTCGAGCTTCTTCATGT+CGG | 0.515820 | 4.2:-82684239 | None:intergenic |
| TATTCATATGATGGAACTGA+TGG | 0.520528 | 4.2:-82683657 | None:intergenic |
| AGAGACTGAGGAAGAGAAGA+AGG | 0.523236 | 4.2:+82684026 | MS.gene92572:CDS |
| GTTTAGGTACCAAGCTTCAA+AGG | 0.531194 | 4.2:+82683608 | MS.gene92572:intron |
| ATGTCGGTTTCATCATCCCA+TGG | 0.531275 | 4.2:-82684223 | None:intergenic |
| TGTAGTGGTGTTTCTGGTGA+GGG | 0.534968 | 4.2:+82683886 | MS.gene92572:intron |
| CTCACACGCAGTTACATCAC+TGG | 0.535094 | 4.2:+82683503 | MS.gene92572:CDS |
| ACAGCCAAACTTGTCCCTGT+TGG | 0.544104 | 4.2:+82686629 | MS.gene92572:intron |
| CTCTGGACATACTCGTTGAT+GGG | 0.546234 | 4.2:-82686743 | None:intergenic |
| AAACTTGTCCCTGTTGGGTA+CGG | 0.548491 | 4.2:+82686635 | MS.gene92572:CDS |
| CAGTTGGAAGGGTTGTTCTG+GGG | 0.550288 | 4.2:+82684277 | MS.gene92572:CDS |
| TTCTGACACAAAGGCAGCTG+AGG | 0.553231 | 4.2:+82683969 | MS.gene92572:CDS |
| TACTGTTGGATGTGAAGCCA+TGG | 0.557522 | 4.2:+82684206 | MS.gene92572:CDS |
| GGAACGGGCAGCAGCCGTGA+AGG | 0.572363 | 4.2:+82684056 | MS.gene92572:CDS |
| TGAGATCTGTTCAGTTGGAA+GGG | 0.572783 | 4.2:+82684266 | MS.gene92572:CDS |
| CTGTAGTGGTGTTTCTGGTG+AGG | 0.577236 | 4.2:+82683885 | MS.gene92572:intron |
| AGGCCACAATGTCACAACTC+TGG | 0.585892 | 4.2:-82686760 | None:intergenic |
| ATCCTCAACCATATTGTCGA+CGG | 0.593242 | 4.2:-82686705 | None:intergenic |
| CACCGTGGAATCTTCTCTTG+TGG | 0.597197 | 4.2:+82683918 | MS.gene92572:CDS |
| ATGAATATGGGAATGTTGCT+AGG | 0.597917 | 4.2:+82683673 | MS.gene92572:CDS |
| GGAAGAGAAGAAGGCAGCTG+AGG | 0.604357 | 4.2:+82684035 | MS.gene92572:CDS |
| TGTGTCAGAAACTGGAGGAG+TGG | 0.624152 | 4.2:-82683956 | None:intergenic |
| TCCTCCAGTTTCTGACACAA+AGG | 0.631021 | 4.2:+82683960 | MS.gene92572:CDS |
| GCCTTTGTGTCAGAAACTGG+AGG | 0.631902 | 4.2:-82683961 | None:intergenic |
| TCACACGCAGTTACATCACT+GGG | 0.638579 | 4.2:+82683504 | MS.gene92572:CDS |
| TGTCCAGAGTTGTGACATTG+TGG | 0.639251 | 4.2:+82686757 | MS.gene92572:CDS |
| TGATGTAACTGCGTGTGAGA+AGG | 0.646574 | 4.2:-82683499 | None:intergenic |
| AGCCACAAGAGAAGATTCCA+CGG | 0.646775 | 4.2:-82683920 | None:intergenic |
| ACTGTTGGATGTGAAGCCAT+GGG | 0.650142 | 4.2:+82684207 | MS.gene92572:CDS |
| TCTTGATACCGTACCCAACA+GGG | 0.655761 | 4.2:-82686643 | None:intergenic |
| TTTGTTTGGTGAAGAGACTG+AGG | 0.673347 | 4.2:+82684014 | MS.gene92572:CDS |
| TGAGGGATCTGGTGTCACCG+TGG | 0.761218 | 4.2:+82683903 | MS.gene92572:CDS |
| AATATGGGAATGTTGCTAGG+TGG | 0.778608 | 4.2:+82683676 | MS.gene92572:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATCTAAATAATAAAAAA+AGG | + | chr4.2:82685778-82685797 | MS.gene92572:intron | 10.0% |
| !! | CTAATCTAAATAATAAAAAA+AGG | - | chr4.2:82685797-82685778 | None:intergenic | 10.0% |
| !!! | GTAAATTAACATTTTTTTTT+AGG | - | chr4.2:82685733-82685752 | None:intergenic | 10.0% |
| !!! | GTAAATTAACTTTTTTTTTT+GGG | + | chr4.2:82684792-82684811 | MS.gene92572:intron | 10.0% |
| !!! | TGTAAATTAACTTTTTTTTT+TGG | + | chr4.2:82684791-82684810 | MS.gene92572:intron | 10.0% |
| !!! | TTAAGTTCTAATTTTTTTAT+GGG | - | chr4.2:82685813-82685832 | None:intergenic | 10.0% |
| !!! | TTTAAGTTCTAATTTTTTTA+TGG | - | chr4.2:82685814-82685833 | None:intergenic | 10.0% |
| !! | ATAAAAACAGATGAAAATAA+AGG | + | chr4.2:82686169-82686188 | MS.gene92572:intron | 15.0% |
| !! | ATCTAAATAATAAAAAAAGG+AGG | + | chr4.2:82685781-82685800 | MS.gene92572:intron | 15.0% |
| !! | ATCTAAATAATAAAAAAAGG+AGG | - | chr4.2:82685800-82685781 | None:intergenic | 15.0% |
| !! | ATTATTAAAAATGACAATCA+AGG | + | chr4.2:82686937-82686956 | MS.gene92572:intron | 15.0% |
| !! | TAATTCAAATGAATTGTATT+CGG | + | chr4.2:82683820-82683839 | MS.gene92572:intron | 15.0% |
| !! | TGCTATTACAAAAAAAAAAA+AGG | - | chr4.2:82684834-82684853 | None:intergenic | 15.0% |
| !! | TTATTAAAAATGACAATCAA+GGG | + | chr4.2:82686938-82686957 | MS.gene92572:intron | 15.0% |
| !!! | AAAGTTTGTTTTTACTATTT+TGG | - | chr4.2:82684571-82684590 | None:intergenic | 15.0% |
| !!! | TAAGTTCTAATTTTTTTATG+GGG | - | chr4.2:82685812-82685831 | None:intergenic | 15.0% |
| !!! | TATAATAAAGATTTTGTTTG+CGG | + | chr4.2:82683790-82683809 | MS.gene92572:intron | 15.0% |
| !!! | TGTTTTTATTTGATTTGTTT+AGG | + | chr4.2:82683592-82683611 | MS.gene92572:intron | 15.0% |
| !!! | TTTTATAAATTCCATTTAGT+TGG | - | chr4.2:82686008-82686027 | None:intergenic | 15.0% |
| !! | AATTCTAACCCAAAAAAATT+TGG | + | chr4.2:82685701-82685720 | MS.gene92572:intron | 20.0% |
| !! | ACAGACACAAAATTAAAATT+TGG | - | chr4.2:82683869-82683888 | None:intergenic | 20.0% |
| !! | CAAAAAAAAAGGGATAAAAA+AGG | + | chr4.2:82685675-82685694 | MS.gene92572:intron | 20.0% |
| !! | CATATAAAATTGTAGCAAAA+GGG | + | chr4.2:82686062-82686081 | MS.gene92572:intron | 20.0% |
| !! | TAATGCTATATCAAATTCTT+TGG | + | chr4.2:82686859-82686878 | MS.gene92572:intron | 20.0% |
| !! | TATGAATAATTGACAAAGAT+CGG | - | chr4.2:82683747-82683766 | None:intergenic | 20.0% |
| !! | TGGATAAAAAATTAGACTAT+TGG | - | chr4.2:82684551-82684570 | None:intergenic | 20.0% |
| !!! | AAGTAATTTTCAGATGTTAT+TGG | + | chr4.2:82686797-82686816 | MS.gene92572:intron | 20.0% |
| !!! | ACTTGCTATTACAAAAAAAA+AGG | + | chr4.2:82685664-82685683 | MS.gene92572:intron | 20.0% |
| !!! | ATCGAAAAACAGTAATTTTA+TGG | - | chr4.2:82686457-82686476 | None:intergenic | 20.0% |
| !!! | CTTGCTATTACAAAAAAAAA+GGG | + | chr4.2:82685665-82685684 | MS.gene92572:intron | 20.0% |
| !!! | TATGTTTTTTTGTTCTTCAT+AGG | + | chr4.2:82683532-82683551 | MS.gene92572:intron | 20.0% |
| ! | AAACTTGCACAATTTCAATA+AGG | + | chr4.2:82685079-82685098 | MS.gene92572:intron | 25.0% |
| ! | AATAGACGAAAAGATAAGAA+CGG | - | chr4.2:82684328-82684347 | None:intergenic | 25.0% |
| ! | ATAATAAAAAAAGGAGGATG+AGG | - | chr4.2:82684738-82684757 | None:intergenic | 25.0% |
| ! | ATGAAAATAAAGGAGAAAGA+AGG | + | chr4.2:82686179-82686198 | MS.gene92572:intron | 25.0% |
| ! | CCATATAAAATTGTAGCAAA+AGG | + | chr4.2:82686061-82686080 | MS.gene92572:intron | 25.0% |
| ! | TCAAATTATGCTTACTATTG+TGG | + | chr4.2:82686670-82686689 | MS.gene92572:CDS | 25.0% |
| ! | TGTTGTATACTATTCTTCAA+GGG | + | chr4.2:82684432-82684451 | MS.gene92572:intron | 25.0% |
| ! | TTGATTTCCATTGAAAAACT+CGG | + | chr4.2:82686095-82686114 | MS.gene92572:intron | 25.0% |
| ! | TTGTTGTATACTATTCTTCA+AGG | + | chr4.2:82684431-82684450 | MS.gene92572:intron | 25.0% |
| !! | CCTTTTGCTACAATTTTATA+TGG | - | chr4.2:82686064-82686083 | None:intergenic | 25.0% |
| !! | TTACTTACAGATTTTGTTGA+AGG | - | chr4.2:82686783-82686802 | None:intergenic | 25.0% |
| !! | TTTTGTAATAGCAAGTACAT+GGG | + | chr4.2:82684841-82684860 | MS.gene92572:intron | 25.0% |
| !! | TTTTGTAATAGCAAGTACAT+GGG | - | chr4.2:82684860-82684841 | None:intergenic | 25.0% |
| !! | TTTTTGTAATAGCAAGTACA+TGG | + | chr4.2:82684840-82684859 | MS.gene92572:intron | 25.0% |
| !! | TTTTTGTAATAGCAAGTACA+TGG | - | chr4.2:82684859-82684840 | None:intergenic | 25.0% |
| !!! | ACTCATAATTTGTTGAAATC+TGG | + | chr4.2:82684122-82684141 | MS.gene92572:intron | 25.0% |
| !!! | AGGATGATACCAAATTTTTT+TGG | - | chr4.2:82685713-82685732 | None:intergenic | 25.0% |
| !!! | ATAATTTGTTGAAATCTGGT+TGG | + | chr4.2:82684126-82684145 | MS.gene92572:intron | 25.0% |
| !!! | GGATGATACCAAATTTTTTT+GGG | - | chr4.2:82685712-82685731 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTGTGTCTGTAG+TGG | + | chr4.2:82683871-82683890 | MS.gene92572:intron | 25.0% |
| AAACTTGCACAATTTCAACA+AGG | - | chr4.2:82685420-82685439 | None:intergenic | 30.0% | |
| ACATTCCCATATTCATATGA+TGG | - | chr4.2:82683669-82683688 | None:intergenic | 30.0% | |
| AGAAGAAAGAAACACAAAGA+GGG | - | chr4.2:82684639-82684658 | None:intergenic | 30.0% | |
| AGTCACATTCTATAACCTTA+AGG | + | chr4.2:82683445-82683464 | MS.gene92572:CDS | 30.0% | |
| ATAATTGACAAAGATCGGAA+TGG | - | chr4.2:82683742-82683761 | None:intergenic | 30.0% | |
| CACGTAAAAATGTTGTAGAA+GGG | + | chr4.2:82685963-82685982 | MS.gene92572:intron | 30.0% | |
| CAGTTCCATCATATGAATAT+GGG | + | chr4.2:82683661-82683680 | MS.gene92572:CDS | 30.0% | |
| GTTAACTTCAAAAGGAGTTT+GGG | + | chr4.2:82685056-82685075 | MS.gene92572:intron | 30.0% | |
| GTTAACTTCAAAAGGAGTTT+GGG | - | chr4.2:82685075-82685056 | None:intergenic | 30.0% | |
| TAATTGACAAAGATCGGAAT+GGG | - | chr4.2:82683741-82683760 | None:intergenic | 30.0% | |
| TCAGTTCCATCATATGAATA+TGG | + | chr4.2:82683660-82683679 | MS.gene92572:CDS | 30.0% | |
| TTTGATCTGTCTCAAAGAAT+GGG | + | chr4.2:82685597-82685616 | MS.gene92572:intron | 30.0% | |
| ! | CTTACTTTCTTTCTTTTTGC+CGG | - | chr4.2:82684085-82684104 | None:intergenic | 30.0% |
| ! | TATTCATATGATGGAACTGA+TGG | - | chr4.2:82683660-82683679 | None:intergenic | 30.0% |
| ! | TTTTGATCTGTCTCAAAGAA+TGG | + | chr4.2:82685596-82685615 | MS.gene92572:intron | 30.0% |
| !! | ACAAGTTTGTTTTCCCTATT+GGG | + | chr4.2:82684493-82684512 | MS.gene92572:intron | 30.0% |
| !! | AGCAAATCCTATTTCTTTTC+TGG | - | chr4.2:82685129-82685148 | None:intergenic | 30.0% |
| !! | TTCAGATGTTATTGGTTTGT+TGG | + | chr4.2:82686805-82686824 | MS.gene92572:intron | 30.0% |
| !!! | CCTTTTGAAGTTAACCATTT+CGG | + | chr4.2:82685448-82685467 | MS.gene92572:intron | 30.0% |
| !!! | CCTTTTGAAGTTAACCATTT+CGG | - | chr4.2:82685467-82685448 | None:intergenic | 30.0% |
| !!! | GGTTTTGATTGGATCATTTA+TGG | - | chr4.2:82685002-82685021 | None:intergenic | 30.0% |
| AAAAAAAGGAGGATGAGGTT+GGG | - | chr4.2:82684733-82684752 | None:intergenic | 35.0% | |
| AAGAAGGATAGATCCAAATC+AGG | + | chr4.2:82686195-82686214 | MS.gene92572:intron | 35.0% | |
| AAGAGATGAGATAGGATATG+AGG | + | chr4.2:82685524-82685543 | MS.gene92572:intron | 35.0% | |
| AAGGCAACCAGAAAAGAAAT+AGG | + | chr4.2:82685119-82685138 | MS.gene92572:intron | 35.0% | |
| AATTTGCAATTCGTATGGCA+TGG | + | chr4.2:82686887-82686906 | MS.gene92572:intron | 35.0% | |
| AGAAGAAAGAAACACAGAGA+GGG | + | chr4.2:82686373-82686392 | MS.gene92572:intron | 35.0% | |
| ATAGGGAGAAGAGTTTATCA+TGG | + | chr4.2:82686314-82686333 | MS.gene92572:intron | 35.0% | |
| ATAGGGAGAAGAGTTTATCA+TGG | - | chr4.2:82686333-82686314 | None:intergenic | 35.0% | |
| ATGAATATGGGAATGTTGCT+AGG | + | chr4.2:82683673-82683692 | MS.gene92572:CDS | 35.0% | |
| CCACGTAAAAATGTTGTAGA+AGG | + | chr4.2:82685962-82685981 | MS.gene92572:intron | 35.0% | |
| CCGAAATGGTTAACTTCAAA+AGG | + | chr4.2:82685048-82685067 | MS.gene92572:intron | 35.0% | |
| CCGAAATGGTTAACTTCAAA+AGG | - | chr4.2:82685067-82685048 | None:intergenic | 35.0% | |
| CTATCGGAAAACAACCATTA+TGG | - | chr4.2:82686234-82686253 | None:intergenic | 35.0% | |
| GAAGAGTTTATCATGGTTGT+TGG | + | chr4.2:82686321-82686340 | MS.gene92572:intron | 35.0% | |
| GAGAAGAAAGAAACACAAAG+AGG | - | chr4.2:82684640-82684659 | None:intergenic | 35.0% | |
| GAGAGATTTGTGTGTGAATA+GGG | + | chr4.2:82686297-82686316 | MS.gene92572:intron | 35.0% | |
| GAGAGATTTGTGTGTGAATA+GGG | - | chr4.2:82686316-82686297 | None:intergenic | 35.0% | |
| GGTTAACTTCAAAAGGAGTT+TGG | + | chr4.2:82685055-82685074 | MS.gene92572:intron | 35.0% | |
| GGTTAACTTCAAAAGGAGTT+TGG | - | chr4.2:82685074-82685055 | None:intergenic | 35.0% | |
| TAAAAAAAGGAGGATGAGGT+TGG | - | chr4.2:82684734-82684753 | None:intergenic | 35.0% | |
| TATAACCTTAAGGCTGAATC+TGG | + | chr4.2:82683455-82683474 | MS.gene92572:CDS | 35.0% | |
| TCTGGTTGGACATCAATTTA+TGG | + | chr4.2:82684140-82684159 | MS.gene92572:intron | 35.0% | |
| TGAGAGATTTGTGTGTGAAT+AGG | + | chr4.2:82686296-82686315 | MS.gene92572:intron | 35.0% | |
| TGAGAGATTTGTGTGTGAAT+AGG | - | chr4.2:82686315-82686296 | None:intergenic | 35.0% | |
| TGCAGAATTTGCAATTCGTA+TGG | + | chr4.2:82686882-82686901 | MS.gene92572:intron | 35.0% | |
| TGGAAAATCATCTGTACTGT+TGG | + | chr4.2:82684192-82684211 | MS.gene92572:CDS | 35.0% | |
| TGGATCAAGTGAGATATGAT+GGG | - | chr4.2:82684531-82684550 | None:intergenic | 35.0% | |
| TTGGATCAAGTGAGATATGA+TGG | - | chr4.2:82684532-82684551 | None:intergenic | 35.0% | |
| TTTGATCTGTCTCAGAGAAT+GGG | - | chr4.2:82684904-82684923 | None:intergenic | 35.0% | |
| ! | ACATTTTTACGTGGTCGTTT+TGG | - | chr4.2:82685956-82685975 | None:intergenic | 35.0% |
| ! | AGATGATTTTCCACCTAGAA+CGG | - | chr4.2:82684185-82684204 | None:intergenic | 35.0% |
| ! | CCCTAGTCATTTAAAATCAG+CGG | + | chr4.2:82684929-82684948 | MS.gene92572:intron | 35.0% |
| ! | CCCTAGTCATTTAAAATCAG+CGG | - | chr4.2:82684948-82684929 | None:intergenic | 35.0% |
| ! | CCTTCTACAACATTTTTACG+TGG | - | chr4.2:82685965-82685984 | None:intergenic | 35.0% |
| ! | CTGGTGCACAAATAAGATTT+TGG | + | chr4.2:82684460-82684479 | MS.gene92572:intron | 35.0% |
| ! | TTTTGATCTGTCTCAGAGAA+TGG | - | chr4.2:82684905-82684924 | None:intergenic | 35.0% |
| !! | ACTAGATCCGAGTTTTTCAA+TGG | - | chr4.2:82686105-82686124 | None:intergenic | 35.0% |
| !! | AGCAGATCCTATTTCTTTTC+TGG | + | chr4.2:82685370-82685389 | MS.gene92572:intron | 35.0% |
| !! | CACAAGTTTGTTTTCCCTAT+TGG | + | chr4.2:82684492-82684511 | MS.gene92572:intron | 35.0% |
| !! | CATAATGGTTGTTTTCCGAT+AGG | + | chr4.2:82686232-82686251 | MS.gene92572:intron | 35.0% |
| !! | GATGACGATGTTGATTTGTT+TGG | + | chr4.2:82684000-82684019 | MS.gene92572:CDS | 35.0% |
| !! | GTTGTTTGATTTGTGACATG+AGG | + | chr4.2:82686262-82686281 | MS.gene92572:intron | 35.0% |
| !! | TAATGTCATCCTTTGAAGCT+TGG | - | chr4.2:82683620-82683639 | None:intergenic | 35.0% |
| !! | TTGATTTGTGACATGAGGTT+GGG | + | chr4.2:82686267-82686286 | MS.gene92572:intron | 35.0% |
| !! | TTTGATTTGTGACATGAGGT+TGG | + | chr4.2:82686266-82686285 | MS.gene92572:intron | 35.0% |
| !!! | ACCGCTGATTTTAAATGACT+AGG | + | chr4.2:82685566-82685585 | MS.gene92572:intron | 35.0% |
| !!! | ACCGCTGATTTTAAATGACT+AGG | - | chr4.2:82685585-82685566 | None:intergenic | 35.0% |
| !!! | CCGCTGATTTTAAATGACTA+GGG | + | chr4.2:82685567-82685586 | MS.gene92572:intron | 35.0% |
| !!! | CCGCTGATTTTAAATGACTA+GGG | - | chr4.2:82685586-82685567 | None:intergenic | 35.0% |
| !!! | TTCTTTTCTGGTTGCCTTAT+AGG | - | chr4.2:82685117-82685136 | None:intergenic | 35.0% |
| AAGAGATGAGAGAGAGGATT+AGG | + | chr4.2:82685475-82685494 | MS.gene92572:intron | 40.0% | |
| AAGAGATGAGAGAGAGGATT+AGG | - | chr4.2:82685494-82685475 | None:intergenic | 40.0% | |
| AAGGCAGCCAGAAAAGAAAT+AGG | - | chr4.2:82685380-82685399 | None:intergenic | 40.0% | |
| AATATGGGAATGTTGCTAGG+TGG | + | chr4.2:82683676-82683695 | MS.gene92572:CDS | 40.0% | |
| ACAGATCTGTGCCAACTAAA+TGG | + | chr4.2:82685994-82686013 | MS.gene92572:intron | 40.0% | |
| AGAGACACACTTTCCTGATT+TGG | - | chr4.2:82686211-82686230 | None:intergenic | 40.0% | |
| AGAGATGAGAGAGAGGATTA+GGG | + | chr4.2:82685476-82685495 | MS.gene92572:intron | 40.0% | |
| AGAGATGAGAGAGAGGATTA+GGG | - | chr4.2:82685495-82685476 | None:intergenic | 40.0% | |
| ATCCTCAACCATATTGTCGA+CGG | - | chr4.2:82686708-82686727 | None:intergenic | 40.0% | |
| ATGGACGAAAGAGATGAGAT+AGG | + | chr4.2:82685516-82685535 | MS.gene92572:intron | 40.0% | |
| CAAACAACACCACAACCTAT+CGG | - | chr4.2:82686250-82686269 | None:intergenic | 40.0% | |
| CATTGATGCACAAGGATTTG+GGG | + | chr4.2:82685202-82685221 | MS.gene92572:intron | 40.0% | |
| CATTGATGCACAAGGATTTG+GGG | - | chr4.2:82685221-82685202 | None:intergenic | 40.0% | |
| GAAGAGTTTATCATGGTTGC+TGG | - | chr4.2:82684679-82684698 | None:intergenic | 40.0% | |
| GAGAAGAAAGAAACACAGAG+AGG | + | chr4.2:82686372-82686391 | MS.gene92572:intron | 40.0% | |
| GAGTTTATCATGGTTGTTGG+AGG | + | chr4.2:82686324-82686343 | MS.gene92572:intron | 40.0% | |
| GGATCAAGTGAGATATGATG+GGG | - | chr4.2:82684530-82684549 | None:intergenic | 40.0% | |
| GGCTTGAGATTAACCCAATA+GGG | - | chr4.2:82684509-82684528 | None:intergenic | 40.0% | |
| GGTTTCGATTGGATCAGTTA+TGG | + | chr4.2:82685497-82685516 | MS.gene92572:intron | 40.0% | |
| GTTTAGGTACCAAGCTTCAA+AGG | + | chr4.2:82683608-82683627 | MS.gene92572:intron | 40.0% | |
| TAATAGCAAGTACATGGGCT+GGG | + | chr4.2:82684846-82684865 | MS.gene92572:intron | 40.0% | |
| TCTCTGCAATACGAAGACTA+AGG | - | chr4.2:82686518-82686537 | None:intergenic | 40.0% | |
| TGAGATCTGTTCAGTTGGAA+GGG | + | chr4.2:82684266-82684285 | MS.gene92572:CDS | 40.0% | |
| TTCTTCGAGCTTCTTCATGT+CGG | - | chr4.2:82684242-82684261 | None:intergenic | 40.0% | |
| ! | GAAAGTGTGTCTCTCCATAA+TGG | + | chr4.2:82686217-82686236 | MS.gene92572:intron | 40.0% |
| ! | GCATTGATGCACAAGGATTT+GGG | + | chr4.2:82685201-82685220 | MS.gene92572:intron | 40.0% |
| ! | GCATTGATGCACAAGGATTT+GGG | - | chr4.2:82685220-82685201 | None:intergenic | 40.0% |
| ! | TCTTGTTTCCGTCGACAATA+TGG | + | chr4.2:82686697-82686716 | MS.gene92572:CDS | 40.0% |
| ! | TTTGTTTGGTGAAGAGACTG+AGG | + | chr4.2:82684014-82684033 | MS.gene92572:CDS | 40.0% |
| !! | GAGAGGATTAGGGTTTTGAT+TGG | - | chr4.2:82685013-82685032 | None:intergenic | 40.0% |
| !!! | GTTGTTGGAGGTTTTGTTGT+TGG | + | chr4.2:82686336-82686355 | MS.gene92572:intron | 40.0% |
| !!! | TTCTTTTCTGGCTGCCTTAT+AGG | + | chr4.2:82685382-82685401 | MS.gene92572:intron | 40.0% |
| !!! | TTTTCTGCTGATTCCGTTCT+AGG | + | chr4.2:82684169-82684188 | MS.gene92572:intron | 40.0% |
| AAACTTGTCCCTGTTGGGTA+CGG | + | chr4.2:82686635-82686654 | MS.gene92572:CDS | 45.0% | |
| ACTCTGGACATACTCGTTGA+TGG | - | chr4.2:82686747-82686766 | None:intergenic | 45.0% | |
| ACTGTTGGATGTGAAGCCAT+GGG | + | chr4.2:82684207-82684226 | MS.gene92572:CDS | 45.0% | |
| AGAAAGAAACACAGAGAGGG+AGG | + | chr4.2:82686376-82686395 | MS.gene92572:intron | 45.0% | |
| AGAGACTGAGGAAGAGAAGA+AGG | + | chr4.2:82684026-82684045 | MS.gene92572:CDS | 45.0% | |
| AGATGCAGTTGGGTATGCAA+CGG | + | chr4.2:82685237-82685256 | MS.gene92572:intron | 45.0% | |
| AGCAGTGAGATCTGTTCAGT+TGG | + | chr4.2:82684261-82684280 | MS.gene92572:CDS | 45.0% | |
| AGCCACAAGAGAAGATTCCA+CGG | - | chr4.2:82683923-82683942 | None:intergenic | 45.0% | |
| ATCTGTCTCAAAGAATGGGC+CGG | + | chr4.2:82685601-82685620 | MS.gene92572:intron | 45.0% | |
| CTCATCTCTTTCGTCCGAAA+TGG | + | chr4.2:82685034-82685053 | MS.gene92572:intron | 45.0% | |
| CTCATCTCTTTCGTCCGAAA+TGG | - | chr4.2:82685053-82685034 | None:intergenic | 45.0% | |
| CTCTGGACATACTCGTTGAT+GGG | - | chr4.2:82686746-82686765 | None:intergenic | 45.0% | |
| GAAAGAAACACAGAGAGGGA+GGG | + | chr4.2:82686377-82686396 | MS.gene92572:intron | 45.0% | |
| GAGAGGATTAGGGTTTCGAT+TGG | + | chr4.2:82685486-82685505 | MS.gene92572:intron | 45.0% | |
| GAGTTTATCATGGTTGCTGG+AGG | - | chr4.2:82684676-82684695 | None:intergenic | 45.0% | |
| GGCATGGAGATCATTGTAGT+GGG | + | chr4.2:82686903-82686922 | MS.gene92572:intron | 45.0% | |
| GGGCTTGAGATTAACCCAAT+AGG | - | chr4.2:82684510-82684529 | None:intergenic | 45.0% | |
| GTAATAGCAAGTACATGGGC+CGG | - | chr4.2:82684864-82684845 | None:intergenic | 45.0% | |
| GTAATAGCAAGTACATGGGC+TGG | + | chr4.2:82684845-82684864 | MS.gene92572:intron | 45.0% | |
| GTGAGATCTGTTCAGTTGGA+AGG | + | chr4.2:82684265-82684284 | MS.gene92572:CDS | 45.0% | |
| TAATAGCAAGTACATGGGCC+GGG | - | chr4.2:82685655-82685674 | None:intergenic | 45.0% | |
| TACTGTTGGATGTGAAGCCA+TGG | + | chr4.2:82684206-82684225 | MS.gene92572:CDS | 45.0% | |
| TCAAGCCAGATTCAGCCTTA+AGG | - | chr4.2:82683463-82683482 | None:intergenic | 45.0% | |
| TCACACGCAGTTACATCACT+GGG | + | chr4.2:82683504-82683523 | MS.gene92572:CDS | 45.0% | |
| TCAGTTGGAAGGGTTGTTCT+GGG | + | chr4.2:82684276-82684295 | MS.gene92572:CDS | 45.0% | |
| TCCTCCAGTTTCTGACACAA+AGG | + | chr4.2:82683960-82683979 | MS.gene92572:CDS | 45.0% | |
| TCTCACATCACGCTTAGCAT+TGG | + | chr4.2:82685334-82685353 | MS.gene92572:intron | 45.0% | |
| TCTTGATACCGTACCCAACA+GGG | - | chr4.2:82686646-82686665 | None:intergenic | 45.0% | |
| TGATGTAACTGCGTGTGAGA+AGG | - | chr4.2:82683502-82683521 | None:intergenic | 45.0% | |
| TGGCATGGAGATCATTGTAG+TGG | + | chr4.2:82686902-82686921 | MS.gene92572:intron | 45.0% | |
| TGTCCAGAGTTGTGACATTG+TGG | + | chr4.2:82686757-82686776 | MS.gene92572:CDS | 45.0% | |
| TGTGTCTGTAGTGGTGTTTC+TGG | + | chr4.2:82683880-82683899 | MS.gene92572:intron | 45.0% | |
| TTCAGTTGGAAGGGTTGTTC+TGG | + | chr4.2:82684275-82684294 | MS.gene92572:CDS | 45.0% | |
| TTCCGTCGACAATATGGTTG+AGG | + | chr4.2:82686703-82686722 | MS.gene92572:CDS | 45.0% | |
| TTCTTGATACCGTACCCAAC+AGG | - | chr4.2:82686647-82686666 | None:intergenic | 45.0% | |
| TTTGCAACACCAGATGCAGT+TGG | - | chr4.2:82685273-82685292 | None:intergenic | 45.0% | |
| ! | AAGAGATGAGAGAGAGCATG+AGG | - | chr4.2:82684975-82684994 | None:intergenic | 45.0% |
| ! | CTATTCTTCAAGGGCATGTC+TGG | + | chr4.2:82684441-82684460 | MS.gene92572:intron | 45.0% |
| !! | ATGTCGGTTTCATCATCCCA+TGG | - | chr4.2:82684226-82684245 | None:intergenic | 45.0% |
| !! | GGCATTGATGCACAAGGATT+TGG | + | chr4.2:82685200-82685219 | MS.gene92572:intron | 45.0% |
| !! | GGCATTGATGCACAAGGATT+TGG | - | chr4.2:82685219-82685200 | None:intergenic | 45.0% |
| !! | GGTTGTTTTCCGATAGGTTG+TGG | + | chr4.2:82686238-82686257 | MS.gene92572:intron | 45.0% |
| !! | TGTAGTGGTGTTTCTGGTGA+GGG | + | chr4.2:82683886-82683905 | MS.gene92572:intron | 45.0% |
| AACACCAGATGCAGTTGGCA+TGG | - | chr4.2:82685268-82685287 | None:intergenic | 50.0% | |
| ACAGCCAAACTTGTCCCTGT+TGG | + | chr4.2:82686629-82686648 | MS.gene92572:intron | 50.0% | |
| ACGCAGTTACATCACTGGGT+AGG | + | chr4.2:82683508-82683527 | MS.gene92572:intron | 50.0% | |
| AGAAGAAGGCAGCTGAGGAA+CGG | + | chr4.2:82684040-82684059 | MS.gene92572:CDS | 50.0% | |
| AGGCCACAATGTCACAACTC+TGG | - | chr4.2:82686763-82686782 | None:intergenic | 50.0% | |
| ATCTGTCTCAGAGAATGGGC+CGG | - | chr4.2:82684900-82684919 | None:intergenic | 50.0% | |
| CACCGTGGAATCTTCTCTTG+TGG | + | chr4.2:82683918-82683937 | MS.gene92572:CDS | 50.0% | |
| CAGCCAAACTTGTCCCTGTT+GGG | + | chr4.2:82686630-82686649 | MS.gene92572:intron | 50.0% | |
| CAGTTGGAAGGGTTGTTCTG+GGG | + | chr4.2:82684277-82684296 | MS.gene92572:CDS | 50.0% | |
| CTCACACGCAGTTACATCAC+TGG | + | chr4.2:82683503-82683522 | MS.gene92572:CDS | 50.0% | |
| GCCTTTGTGTCAGAAACTGG+AGG | - | chr4.2:82683964-82683983 | None:intergenic | 50.0% | |
| GCGTGATGTGAGACATGCAA+AGG | - | chr4.2:82685327-82685346 | None:intergenic | 50.0% | |
| GCTGCCTTTGTGTCAGAAAC+TGG | - | chr4.2:82683967-82683986 | None:intergenic | 50.0% | |
| GGACGAAAGAGATGAGAGAG+AGG | + | chr4.2:82685469-82685488 | MS.gene92572:intron | 50.0% | |
| GGACGAAAGAGATGAGAGAG+AGG | - | chr4.2:82685488-82685469 | None:intergenic | 50.0% | |
| GGCTGGGTCATAGTAGAATC+CGG | + | chr4.2:82684862-82684881 | MS.gene92572:intron | 50.0% | |
| GTACCCAACAGGGACAAGTT+TGG | - | chr4.2:82686636-82686655 | None:intergenic | 50.0% | |
| GTGAGACATGCAAAGGATGC+TGG | + | chr4.2:82685179-82685198 | MS.gene92572:intron | 50.0% | |
| GTGAGACATGCAAAGGATGC+TGG | - | chr4.2:82685198-82685179 | None:intergenic | 50.0% | |
| GTTGCATACCCAACTGCATC+TGG | - | chr4.2:82685238-82685257 | None:intergenic | 50.0% | |
| TCTCACAGCACGCTTAGCAT+TGG | - | chr4.2:82685165-82685184 | None:intergenic | 50.0% | |
| TCTGTCTCAAAGAATGGGCC+GGG | + | chr4.2:82685602-82685621 | MS.gene92572:intron | 50.0% | |
| TGTGTCAGAAACTGGAGGAG+TGG | - | chr4.2:82683959-82683978 | None:intergenic | 50.0% | |
| TTCTGACACAAAGGCAGCTG+AGG | + | chr4.2:82683969-82683988 | MS.gene92572:CDS | 50.0% | |
| TTGCAGCACCAGATGCAGTT+GGG | + | chr4.2:82685227-82685246 | MS.gene92572:intron | 50.0% | |
| TTTGCAGCACCAGATGCAGT+TGG | + | chr4.2:82685226-82685245 | MS.gene92572:intron | 50.0% | |
| ! | AATCCGGAGTGTTCAAGACC+CGG | + | chr4.2:82684878-82684897 | MS.gene92572:intron | 50.0% |
| ! | AATCCGGAGTGTTCAAGACC+CGG | - | chr4.2:82684897-82684878 | None:intergenic | 50.0% |
| ! | CACAAGTGAGACGAGTGTTG+TGG | - | chr4.2:82686432-82686451 | None:intergenic | 50.0% |
| ! | CTTTTTGCCGGATGCCTTCA+CGG | - | chr4.2:82684073-82684092 | None:intergenic | 50.0% |
| ! | GGAGCTTGCTTCTGCCTATA+AGG | + | chr4.2:82685100-82685119 | MS.gene92572:intron | 50.0% |
| ! | GGAGCTTGCTTCTGCCTATA+AGG | - | chr4.2:82685119-82685100 | None:intergenic | 50.0% |
| !! | CTGTAGTGGTGTTTCTGGTG+AGG | + | chr4.2:82683885-82683904 | MS.gene92572:intron | 50.0% |
| !! | GATGCTGGCATTGATGCACA+AGG | + | chr4.2:82685194-82685213 | MS.gene92572:intron | 50.0% |
| !! | GATGCTGGCATTGATGCACA+AGG | - | chr4.2:82685213-82685194 | None:intergenic | 50.0% |
| !! | TCTGCTGATTCCGTTCTAGG+TGG | + | chr4.2:82684172-82684191 | MS.gene92572:intron | 50.0% |
| CGTTCCATGCCAACTGCATC+TGG | + | chr4.2:82685261-82685280 | MS.gene92572:intron | 55.0% | |
| CTCCGGATTCTACTACGACC+CGG | + | chr4.2:82685634-82685653 | MS.gene92572:intron | 55.0% | |
| GAAGAAGGCAGCTGAGGAAC+GGG | + | chr4.2:82684041-82684060 | MS.gene92572:CDS | 55.0% | |
| GCGTGCTGTGAGACATGCAA+AGG | + | chr4.2:82685172-82685191 | MS.gene92572:intron | 55.0% | |
| GGAAGAGAAGAAGGCAGCTG+AGG | + | chr4.2:82684035-82684054 | MS.gene92572:CDS | 55.0% | |
| TCTGTCTCAGAGAATGGGCC+GGG | - | chr4.2:82684899-82684918 | None:intergenic | 55.0% | |
| !! | GGTGTTTCTGGTGAGGGATC+TGG | + | chr4.2:82683892-82683911 | MS.gene92572:CDS | 55.0% |
| GGCCGGGTCGTAGTAGAATC+CGG | - | chr4.2:82685639-82685658 | None:intergenic | 60.0% | |
| ! | GTGAGACGAGTGTTGTGGCG+CGG | - | chr4.2:82686427-82686446 | None:intergenic | 60.0% |
| !! | TGAGGGATCTGGTGTCACCG+TGG | + | chr4.2:82683903-82683922 | MS.gene92572:CDS | 60.0% |
| GGGCCGGGTCTTGAACACTC+CGG | + | chr4.2:82685617-82685636 | MS.gene92572:intron | 65.0% | |
| GGGCCGGGTCTTGAACACTC+CGG | - | chr4.2:82685636-82685617 | None:intergenic | 65.0% | |
| !! | GCAGCAGCCGTGAAGGCATC+CGG | + | chr4.2:82684063-82684082 | MS.gene92572:CDS | 65.0% |
| GGAACGGGCAGCAGCCGTGA+AGG | + | chr4.2:82684056-82684075 | MS.gene92572:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 82683440 | 82686975 | 82683440 | ID=MS.gene92572 |
| chr4.2 | mRNA | 82683440 | 82686975 | 82683440 | ID=MS.gene92572.t1;Parent=MS.gene92572 |
| chr4.2 | exon | 82683440 | 82683525 | 82683440 | ID=MS.gene92572.t1.exon1;Parent=MS.gene92572.t1 |
| chr4.2 | CDS | 82683440 | 82683525 | 82683440 | ID=cds.MS.gene92572.t1;Parent=MS.gene92572.t1 |
| chr4.2 | exon | 82683614 | 82683730 | 82683614 | ID=MS.gene92572.t1.exon2;Parent=MS.gene92572.t1 |
| chr4.2 | CDS | 82683614 | 82683730 | 82683614 | ID=cds.MS.gene92572.t1;Parent=MS.gene92572.t1 |
| chr4.2 | exon | 82683891 | 82684099 | 82683891 | ID=MS.gene92572.t1.exon3;Parent=MS.gene92572.t1 |
| chr4.2 | CDS | 82683891 | 82684099 | 82683891 | ID=cds.MS.gene92572.t1;Parent=MS.gene92572.t1 |
| chr4.2 | exon | 82684191 | 82684304 | 82684191 | ID=MS.gene92572.t1.exon4;Parent=MS.gene92572.t1 |
| chr4.2 | CDS | 82684191 | 82684304 | 82684191 | ID=cds.MS.gene92572.t1;Parent=MS.gene92572.t1 |
| chr4.2 | exon | 82686633 | 82686794 | 82686633 | ID=MS.gene92572.t1.exon5;Parent=MS.gene92572.t1 |
| chr4.2 | CDS | 82686633 | 82686794 | 82686633 | ID=cds.MS.gene92572.t1;Parent=MS.gene92572.t1 |
| chr4.2 | exon | 82686959 | 82686975 | 82686959 | ID=MS.gene92572.t1.exon6;Parent=MS.gene92572.t1 |
| chr4.2 | CDS | 82686959 | 82686975 | 82686959 | ID=cds.MS.gene92572.t1;Parent=MS.gene92572.t1 |
| Gene Sequence |
| Protein sequence |
