Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036405.t1 | KEH28966.1 | 93.6 | 249 | 16 | 0 | 1 | 249 | 1 | 249 | 5.90E-91 | 344 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036405.t1 | P93447 | 80.1 | 231 | 41 | 1 | 1 | 231 | 1 | 226 | 1.3e-67 | 257.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036405.t1 | A0A072UHR3 | 93.6 | 249 | 16 | 0 | 1 | 249 | 1 | 249 | 4.3e-91 | 344.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene036405 | MS.gene81545 | PPI |
MS.gene036405 | MS.gene005994 | PPI |
MS.gene036405 | MS.gene73243 | PPI |
MS.gene036405 | MS.gene016914 | PPI |
MS.gene036405 | MS.gene006000 | PPI |
MS.gene036405 | MS.gene34008 | PPI |
MS.gene036405 | MS.gene041766 | PPI |
MS.gene036405 | MS.gene54763 | PPI |
MS.gene036405 | MS.gene043773 | PPI |
MS.gene036405 | MS.gene005996 | PPI |
MS.gene036405 | MS.gene058469 | PPI |
MS.gene043773 | MS.gene036405 | PPI |
MS.gene036405 | MS.gene037669 | PPI |
MS.gene036405 | MS.gene048096 | PPI |
MS.gene036405 | MS.gene37588 | PPI |
MS.gene036405 | MS.gene057052 | PPI |
MS.gene036405 | MS.gene074184 | PPI |
MS.gene036405 | MS.gene54761 | PPI |
MS.gene036405 | MS.gene92572 | PPI |
MS.gene036405 | MS.gene041769 | PPI |
MS.gene036405 | MS.gene34006 | PPI |
MS.gene036405 | MS.gene074183 | PPI |
MS.gene036405 | MS.gene39764 | PPI |
MS.gene036405 | MS.gene016105 | PPI |
MS.gene036405 | MS.gene001098 | PPI |
MS.gene036405 | MS.gene041771 | PPI |
MS.gene036405 | MS.gene68663 | PPI |
MS.gene036405 | MS.gene001097 | PPI |
MS.gene036405 | MS.gene47052 | PPI |
MS.gene47051 | MS.gene036405 | PPI |
MS.gene036405 | MS.gene33103 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036405.t1 | MTR_2g461200 | 98.712 | 233 | 3 | 0 | 1 | 233 | 1 | 233 | 9.59e-167 | 461 |
MS.gene036405.t1 | MTR_2g461200 | 99.134 | 231 | 2 | 0 | 1 | 231 | 1 | 231 | 1.90e-166 | 459 |
MS.gene036405.t1 | MTR_4g019610 | 94.378 | 249 | 14 | 0 | 1 | 249 | 1 | 249 | 2.87e-148 | 414 |
MS.gene036405.t1 | MTR_4g019610 | 94.397 | 232 | 13 | 0 | 1 | 232 | 1 | 232 | 6.53e-137 | 384 |
MS.gene036405.t1 | MTR_2g461200 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 6.05e-124 | 350 |
MS.gene036405.t1 | MTR_5g088660 | 58.009 | 231 | 89 | 3 | 1 | 231 | 1 | 223 | 5.89e-81 | 242 |
MS.gene036405.t1 | MTR_5g088685 | 75.000 | 48 | 12 | 0 | 133 | 180 | 2 | 49 | 4.22e-18 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036405.t1 | AT2G18110 | 80.531 | 226 | 43 | 1 | 7 | 231 | 6 | 231 | 4.32e-112 | 322 |
MS.gene036405.t1 | AT1G30230 | 79.646 | 226 | 45 | 1 | 7 | 231 | 6 | 231 | 4.02e-108 | 311 |
MS.gene036405.t1 | AT1G30230 | 79.295 | 227 | 46 | 1 | 7 | 232 | 6 | 232 | 9.03e-108 | 311 |
MS.gene036405.t1 | AT5G12110 | 59.574 | 235 | 84 | 3 | 1 | 231 | 1 | 228 | 1.96e-78 | 236 |
MS.gene036405.t1 | AT5G19510 | 58.009 | 231 | 90 | 2 | 1 | 231 | 1 | 224 | 1.21e-72 | 221 |
Find 59 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGACTGTAGTGGTGTTTC+TGG | 0.118442 | 2.4:-38287858 | MS.gene036405:intron |
TTCAGTTGGAAGGGTTGTTT+TGG | 0.210487 | 2.4:-38287454 | MS.gene036405:CDS |
TCAGTTCCATCATATGAATA+TGG | 0.245099 | 2.4:-38288049 | MS.gene036405:CDS |
TAATGCCATATCATATTCTT+TGG | 0.275686 | 2.4:-38286775 | MS.gene036405:CDS |
TCTTGTTTCCGTTGACAATA+TGG | 0.314177 | 2.4:-38286940 | MS.gene036405:CDS |
TATAACCTTAAGGCTGAATC+TGG | 0.331891 | 2.4:-38288279 | MS.gene036405:CDS |
GCGGTCTTTGTGTCAGAAAC+TGG | 0.332658 | 2.4:+38287774 | None:intergenic |
GCAGCAGCTGTGAAGGCATC+TGG | 0.375915 | 2.4:-38287669 | MS.gene036405:CDS |
GAAGAAGGCAGCTGAGGAAC+GGG | 0.395604 | 2.4:-38287691 | MS.gene036405:CDS |
CTGCACCAAAGAATATGATA+TGG | 0.409640 | 2.4:+38286770 | None:intergenic |
TCAACCCAGATTCAGCCTTA+AGG | 0.411025 | 2.4:+38288274 | None:intergenic |
GATGACGATGTTGATTTGTT+TGG | 0.412687 | 2.4:-38287732 | MS.gene036405:CDS |
TCAAATTATGCTTACTATTG+TGG | 0.416944 | 2.4:-38286967 | MS.gene036405:CDS |
TAGCCAAACTTGTTCCTGTT+GGG | 0.428630 | 2.4:-38287007 | MS.gene036405:CDS |
GGTGTTTCTGGTGAGGGATC+TGG | 0.436594 | 2.4:-38287846 | MS.gene036405:CDS |
GTACCCAACAGGAACAAGTT+TGG | 0.443426 | 2.4:+38287004 | None:intergenic |
ACTCTGGACATACTCATTGA+TGG | 0.454635 | 2.4:+38286893 | None:intergenic |
TTCTTGATACCGTACCCAAC+AGG | 0.456829 | 2.4:+38286993 | None:intergenic |
CAGTTCCATCATATGAATAT+GGG | 0.459928 | 2.4:-38288048 | MS.gene036405:CDS |
TGGGAAATCATCTGTATTGT+TGG | 0.466041 | 2.4:-38287537 | MS.gene036405:CDS |
TTCCGTTGACAATATGGTTG+AGG | 0.479405 | 2.4:-38286934 | MS.gene036405:CDS |
AGTTACACTCTATAACCTTA+AGG | 0.486396 | 2.4:-38288289 | MS.gene036405:CDS |
TTCTTCAAGCTTCTTCATGT+CGG | 0.497830 | 2.4:+38287490 | None:intergenic |
AGCAGTGAGATCTGTTCAGT+TGG | 0.499725 | 2.4:-38287468 | MS.gene036405:CDS |
ACATTCCCATATTCATATGA+TGG | 0.500557 | 2.4:+38288043 | None:intergenic |
TGATGTCATCCTTTGAAGCT+TGG | 0.506163 | 2.4:+38288092 | None:intergenic |
GTGAGATCTGTTCAGTTGGA+AGG | 0.509565 | 2.4:-38287464 | MS.gene036405:CDS |
ATAGCCAAACTTGTTCCTGT+TGG | 0.511083 | 2.4:-38287008 | MS.gene036405:intron |
AGAAGAAGGCAGCTGAGGAA+CGG | 0.514292 | 2.4:-38287692 | MS.gene036405:CDS |
AAACTTGTTCCTGTTGGGTA+CGG | 0.517929 | 2.4:-38287002 | MS.gene036405:CDS |
TATTCATATGATGGAACTGA+TGG | 0.520528 | 2.4:+38288052 | None:intergenic |
AGAGACTGAGGAAGAGAAGA+AGG | 0.523236 | 2.4:-38287706 | MS.gene036405:CDS |
CTTACACGCAGTTACATCAC+TGG | 0.529989 | 2.4:-38288231 | MS.gene036405:CDS |
GGAACGGGCAGCAGCTGTGA+AGG | 0.532840 | 2.4:-38287676 | MS.gene036405:CDS |
GTTTAGGTACCAAGCTTCAA+AGG | 0.538083 | 2.4:-38288101 | MS.gene036405:intron |
CTCTGGACATACTCATTGAT+GGG | 0.540335 | 2.4:+38286894 | None:intergenic |
CACAAAGACCGCTGAAGCTG+AGG | 0.540968 | 2.4:-38287763 | MS.gene036405:CDS |
TGATGTAACTGCGTGTAAGA+AGG | 0.549903 | 2.4:+38288235 | None:intergenic |
TGTAGTGGTGTTTCTGGTGA+GGG | 0.560203 | 2.4:-38287852 | MS.gene036405:intron |
ATGTCGGTCTCATCATCCCA+TGG | 0.564640 | 2.4:+38287506 | None:intergenic |
ATCTTCATCCTCAGCTTCAG+CGG | 0.564970 | 2.4:+38287755 | None:intergenic |
TGAGATCTGTTCAGTTGGAA+GGG | 0.572783 | 2.4:-38287463 | MS.gene036405:CDS |
CTGTAGTGGTGTTTCTGGTG+AGG | 0.577236 | 2.4:-38287853 | MS.gene036405:intron |
ATCCTCAACCATATTGTCAA+CGG | 0.584339 | 2.4:+38286932 | None:intergenic |
AGGCCACAATGTCACAACTC+TGG | 0.585892 | 2.4:+38286877 | None:intergenic |
ATAACCTTAAGGCTGAATCT+GGG | 0.592348 | 2.4:-38288278 | MS.gene036405:CDS |
CACTGTGGAATCTTCTCTTG+TGG | 0.595343 | 2.4:-38287820 | MS.gene036405:CDS |
ATGAATATGGGAATGTTGCT+AGG | 0.597917 | 2.4:-38288036 | MS.gene036405:CDS |
TGTGGAATCTTCTCTTGTGG+CGG | 0.601010 | 2.4:-38287817 | MS.gene036405:CDS |
GGAAGAGAAGAAGGCAGCTG+AGG | 0.604357 | 2.4:-38287697 | MS.gene036405:CDS |
TATTGTTGGATGTGAAGCCA+TGG | 0.605647 | 2.4:-38287523 | MS.gene036405:CDS |
TGTGTCAGAAACTGGAGGAG+TGG | 0.624152 | 2.4:+38287782 | None:intergenic |
TTACACGCAGTTACATCACT+GGG | 0.625744 | 2.4:-38288230 | MS.gene036405:intron |
TGTCCAGAGTTGTGACATTG+TGG | 0.639251 | 2.4:-38286880 | MS.gene036405:CDS |
ATTGTTGGATGTGAAGCCAT+GGG | 0.652625 | 2.4:-38287522 | MS.gene036405:CDS |
GTCTTTGTGTCAGAAACTGG+AGG | 0.655821 | 2.4:+38287777 | None:intergenic |
TGAGGGATCTGGTGTCACTG+TGG | 0.668824 | 2.4:-38287835 | MS.gene036405:CDS |
TTTGTTTGGTGAAGAGACTG+AGG | 0.673347 | 2.4:-38287718 | MS.gene036405:CDS |
AATATGGGAATGTTGCTAGG+TGG | 0.778608 | 2.4:-38288033 | MS.gene036405:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTGTATACTTTTTTTCA+AGG | - | chr2.4:38287760-38287779 | MS.gene036405:CDS | 15.0% |
!! | CTACAATTGAAAAATAAGAT+TGG | + | chr2.4:38287899-38287918 | None:intergenic | 20.0% |
!! | TTCATATCCTCATAATTATT+CGG | - | chr2.4:38287431-38287450 | MS.gene036405:intron | 20.0% |
!!! | TGTTTTTATTTGATCTGTTT+AGG | - | chr2.4:38286929-38286948 | MS.gene036405:CDS | 20.0% |
!!! | TTACTTACAGATTTTATTGA+AGG | + | chr2.4:38288192-38288211 | None:intergenic | 20.0% |
! | ATAATTGACAAAGATGGTAA+GGG | + | chr2.4:38287079-38287098 | None:intergenic | 25.0% |
! | TAATGCCATATCATATTCTT+TGG | - | chr2.4:38288271-38288290 | MS.gene036405:CDS | 25.0% |
! | TATAATTGACAAAGATGGTA+AGG | + | chr2.4:38287080-38287099 | None:intergenic | 25.0% |
! | TCAAATTATGCTTACTATTG+TGG | - | chr2.4:38288079-38288098 | MS.gene036405:CDS | 25.0% |
! | TCACATATAATTGACAAAGA+TGG | + | chr2.4:38287085-38287104 | None:intergenic | 25.0% |
!!! | ATAAGTTTGTTTTCCACTAT+TGG | - | chr2.4:38287823-38287842 | MS.gene036405:CDS | 25.0% |
!!! | TAAGTTTGTTTTCCACTATT+GGG | - | chr2.4:38287824-38287843 | MS.gene036405:CDS | 25.0% |
!!! | TTCAGATTTTATTTGTCTGT+TGG | - | chr2.4:38288214-38288233 | MS.gene036405:intron | 25.0% |
ACATTCCCATATTCATATGA+TGG | + | chr2.4:38287006-38287025 | None:intergenic | 30.0% | |
AGTTACACTCTATAACCTTA+AGG | - | chr2.4:38286757-38286776 | MS.gene036405:CDS | 30.0% | |
ATAATTATTCGGAATCTGGT+TGG | - | chr2.4:38287442-38287461 | MS.gene036405:intron | 30.0% | |
ATGGTGCACAAATAAGATAT+TGG | - | chr2.4:38287791-38287810 | MS.gene036405:CDS | 30.0% | |
CAGTTCCATCATATGAATAT+GGG | - | chr2.4:38286998-38287017 | MS.gene036405:CDS | 30.0% | |
TAATTGACAAAGATGGTAAG+GGG | + | chr2.4:38287078-38287097 | None:intergenic | 30.0% | |
TCAGTTCCATCATATGAATA+TGG | - | chr2.4:38286997-38287016 | MS.gene036405:CDS | 30.0% | |
! | TATTCATATGATGGAACTGA+TGG | + | chr2.4:38286997-38287016 | None:intergenic | 30.0% |
! | TGGACATCAATTTAGAGTAT+TGG | - | chr2.4:38287462-38287481 | MS.gene036405:CDS | 30.0% |
!!! | TTTTTTCAAGGCTATGTCTA+TGG | - | chr2.4:38287772-38287791 | MS.gene036405:CDS | 30.0% |
ATAACCTTAAGGCTGAATCT+GGG | - | chr2.4:38286768-38286787 | MS.gene036405:CDS | 35.0% | |
ATCCTCAACCATATTGTCAA+CGG | + | chr2.4:38288117-38288136 | None:intergenic | 35.0% | |
ATGAATATGGGAATGTTGCT+AGG | - | chr2.4:38287010-38287029 | MS.gene036405:intron | 35.0% | |
CCAGATTCCGAATAATTATG+AGG | + | chr2.4:38287441-38287460 | None:intergenic | 35.0% | |
CCTCATAATTATTCGGAATC+TGG | - | chr2.4:38287438-38287457 | MS.gene036405:intron | 35.0% | |
CTGCACCAAAGAATATGATA+TGG | + | chr2.4:38288279-38288298 | None:intergenic | 35.0% | |
TATAACCTTAAGGCTGAATC+TGG | - | chr2.4:38286767-38286786 | MS.gene036405:CDS | 35.0% | |
TGGATAAAACATTCCACCAT+CGG | + | chr2.4:38287879-38287898 | None:intergenic | 35.0% | |
TGGGAAATCATCTGTATTGT+TGG | - | chr2.4:38287509-38287528 | MS.gene036405:CDS | 35.0% | |
TTCTTCAAGCTTCTTCATGT+CGG | + | chr2.4:38287559-38287578 | None:intergenic | 35.0% | |
! | TCTTGTTTCCGTTGACAATA+TGG | - | chr2.4:38288106-38288125 | MS.gene036405:intron | 35.0% |
! | TTTCTGCTGATTGCATTATC+AGG | - | chr2.4:38287486-38287505 | MS.gene036405:CDS | 35.0% |
!! | ATTGAGTTTTGTGACTGTAG+TGG | - | chr2.4:38287179-38287198 | MS.gene036405:intron | 35.0% |
!! | GATGACGATGTTGATTTGTT+TGG | - | chr2.4:38287314-38287333 | MS.gene036405:intron | 35.0% |
AATATGGGAATGTTGCTAGG+TGG | - | chr2.4:38287013-38287032 | MS.gene036405:intron | 40.0% | |
ACTCTGGACATACTCATTGA+TGG | + | chr2.4:38288156-38288175 | None:intergenic | 40.0% | |
ATTGTTGGATGTGAAGCCAT+GGG | - | chr2.4:38287524-38287543 | MS.gene036405:CDS | 40.0% | |
CTCTGGACATACTCATTGAT+GGG | + | chr2.4:38288155-38288174 | None:intergenic | 40.0% | |
GTTTAGGTACCAAGCTTCAA+AGG | - | chr2.4:38286945-38286964 | MS.gene036405:CDS | 40.0% | |
TATTGTTGGATGTGAAGCCA+TGG | - | chr2.4:38287523-38287542 | MS.gene036405:CDS | 40.0% | |
TGAGATCTGTTCAGTTGGAA+GGG | - | chr2.4:38287583-38287602 | MS.gene036405:intron | 40.0% | |
TGATGTAACTGCGTGTAAGA+AGG | + | chr2.4:38286814-38286833 | None:intergenic | 40.0% | |
TTACACGCAGTTACATCACT+GGG | - | chr2.4:38286816-38286835 | MS.gene036405:intron | 40.0% | |
TTCCGTTGACAATATGGTTG+AGG | - | chr2.4:38288112-38288131 | MS.gene036405:intron | 40.0% | |
! | AAACTTGTTCCTGTTGGGTA+CGG | - | chr2.4:38288044-38288063 | MS.gene036405:CDS | 40.0% |
! | ATAGCCAAACTTGTTCCTGT+TGG | - | chr2.4:38288038-38288057 | MS.gene036405:CDS | 40.0% |
! | TAGCCAAACTTGTTCCTGTT+GGG | - | chr2.4:38288039-38288058 | MS.gene036405:CDS | 40.0% |
! | TGCTGATTGCATTATCAGGT+GGG | - | chr2.4:38287490-38287509 | MS.gene036405:CDS | 40.0% |
! | TTCAGTTGGAAGGGTTGTTT+TGG | - | chr2.4:38287592-38287611 | MS.gene036405:intron | 40.0% |
! | TTTGTTTGGTGAAGAGACTG+AGG | - | chr2.4:38287328-38287347 | MS.gene036405:intron | 40.0% |
!! | TCAGTTGGAAGGGTTGTTTT+GGG | - | chr2.4:38287593-38287612 | MS.gene036405:intron | 40.0% |
!! | TGATGTCATCCTTTGAAGCT+TGG | + | chr2.4:38286957-38286976 | None:intergenic | 40.0% |
AGAGACTGAGGAAGAGAAGA+AGG | - | chr2.4:38287340-38287359 | MS.gene036405:intron | 45.0% | |
AGCAGTGAGATCTGTTCAGT+TGG | - | chr2.4:38287578-38287597 | MS.gene036405:intron | 45.0% | |
ATCTTCATCCTCAGCTTCAG+CGG | + | chr2.4:38287294-38287313 | None:intergenic | 45.0% | |
CACTGTGGAATCTTCTCTTG+TGG | - | chr2.4:38287226-38287245 | MS.gene036405:intron | 45.0% | |
CGGATCAAGCGAGATATGAA+GGG | + | chr2.4:38287859-38287878 | None:intergenic | 45.0% | |
CTTACACGCAGTTACATCAC+TGG | - | chr2.4:38286815-38286834 | MS.gene036405:intron | 45.0% | |
GGGACTTATTGACCCAATAG+TGG | + | chr2.4:38287839-38287858 | None:intergenic | 45.0% | |
GTACCCAACAGGAACAAGTT+TGG | + | chr2.4:38288045-38288064 | None:intergenic | 45.0% | |
GTCTTTGTGTCAGAAACTGG+AGG | + | chr2.4:38287272-38287291 | None:intergenic | 45.0% | |
GTGAGATCTGTTCAGTTGGA+AGG | - | chr2.4:38287582-38287601 | MS.gene036405:intron | 45.0% | |
TCAACCCAGATTCAGCCTTA+AGG | + | chr2.4:38286775-38286794 | None:intergenic | 45.0% | |
TCATATCTCGCTTGATCCGA+TGG | - | chr2.4:38287860-38287879 | MS.gene036405:intron | 45.0% | |
TCGGATCAAGCGAGATATGA+AGG | + | chr2.4:38287860-38287879 | None:intergenic | 45.0% | |
TGTCCAGAGTTGTGACATTG+TGG | - | chr2.4:38288166-38288185 | MS.gene036405:intron | 45.0% | |
TGTGACTGTAGTGGTGTTTC+TGG | - | chr2.4:38287188-38287207 | MS.gene036405:intron | 45.0% | |
TGTGGAATCTTCTCTTGTGG+CGG | - | chr2.4:38287229-38287248 | MS.gene036405:intron | 45.0% | |
TTCTTGATACCGTACCCAAC+AGG | + | chr2.4:38288056-38288075 | None:intergenic | 45.0% | |
! | CTGCTGATTGCATTATCAGG+TGG | - | chr2.4:38287489-38287508 | MS.gene036405:CDS | 45.0% |
!! | CAGTTGGAAGGGTTGTTTTG+GGG | - | chr2.4:38287594-38287613 | MS.gene036405:intron | 45.0% |
!! | TGTAGTGGTGTTTCTGGTGA+GGG | - | chr2.4:38287194-38287213 | MS.gene036405:intron | 45.0% |
ACGCAGTTACATCACTGGGT+AGG | - | chr2.4:38286820-38286839 | MS.gene036405:intron | 50.0% | |
AGAAGAAGGCAGCTGAGGAA+CGG | - | chr2.4:38287354-38287373 | MS.gene036405:intron | 50.0% | |
AGGCCACAATGTCACAACTC+TGG | + | chr2.4:38288172-38288191 | None:intergenic | 50.0% | |
ATGTCGGTCTCATCATCCCA+TGG | + | chr2.4:38287543-38287562 | None:intergenic | 50.0% | |
GCGGTCTTTGTGTCAGAAAC+TGG | + | chr2.4:38287275-38287294 | None:intergenic | 50.0% | |
TATCTCGCTTGATCCGATGG+TGG | - | chr2.4:38287863-38287882 | MS.gene036405:intron | 50.0% | |
TGTGTCAGAAACTGGAGGAG+TGG | + | chr2.4:38287267-38287286 | None:intergenic | 50.0% | |
!! | CTGTAGTGGTGTTTCTGGTG+AGG | - | chr2.4:38287193-38287212 | MS.gene036405:intron | 50.0% |
CACAAAGACCGCTGAAGCTG+AGG | - | chr2.4:38287283-38287302 | MS.gene036405:intron | 55.0% | |
GAAGAAGGCAGCTGAGGAAC+GGG | - | chr2.4:38287355-38287374 | MS.gene036405:intron | 55.0% | |
GGAAGAGAAGAAGGCAGCTG+AGG | - | chr2.4:38287349-38287368 | MS.gene036405:intron | 55.0% | |
!! | GGTGTTTCTGGTGAGGGATC+TGG | - | chr2.4:38287200-38287219 | MS.gene036405:intron | 55.0% |
!! | TGAGGGATCTGGTGTCACTG+TGG | - | chr2.4:38287211-38287230 | MS.gene036405:intron | 55.0% |
!! | GCAGCAGCTGTGAAGGCATC+TGG | - | chr2.4:38287377-38287396 | MS.gene036405:intron | 60.0% |
GGAACGGGCAGCAGCTGTGA+AGG | - | chr2.4:38287370-38287389 | MS.gene036405:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 38286752 | 38288316 | 38286752 | ID=MS.gene036405 |
chr2.4 | mRNA | 38286752 | 38288316 | 38286752 | ID=MS.gene036405.t1;Parent=MS.gene036405 |
chr2.4 | exon | 38288231 | 38288316 | 38288231 | ID=MS.gene036405.t1.exon1;Parent=MS.gene036405.t1 |
chr2.4 | CDS | 38288231 | 38288316 | 38288231 | ID=cds.MS.gene036405.t1;Parent=MS.gene036405.t1 |
chr2.4 | exon | 38288001 | 38288117 | 38288001 | ID=MS.gene036405.t1.exon2;Parent=MS.gene036405.t1 |
chr2.4 | CDS | 38288001 | 38288117 | 38288001 | ID=cds.MS.gene036405.t1;Parent=MS.gene036405.t1 |
chr2.4 | exon | 38287655 | 38287869 | 38287655 | ID=MS.gene036405.t1.exon3;Parent=MS.gene036405.t1 |
chr2.4 | CDS | 38287655 | 38287869 | 38287655 | ID=cds.MS.gene036405.t1;Parent=MS.gene036405.t1 |
chr2.4 | exon | 38287447 | 38287560 | 38287447 | ID=MS.gene036405.t1.exon4;Parent=MS.gene036405.t1 |
chr2.4 | CDS | 38287447 | 38287560 | 38287447 | ID=cds.MS.gene036405.t1;Parent=MS.gene036405.t1 |
chr2.4 | exon | 38286865 | 38287026 | 38286865 | ID=MS.gene036405.t1.exon5;Parent=MS.gene036405.t1 |
chr2.4 | CDS | 38286865 | 38287026 | 38286865 | ID=cds.MS.gene036405.t1;Parent=MS.gene036405.t1 |
chr2.4 | exon | 38286752 | 38286807 | 38286752 | ID=MS.gene036405.t1.exon6;Parent=MS.gene036405.t1 |
chr2.4 | CDS | 38286752 | 38286807 | 38286752 | ID=cds.MS.gene036405.t1;Parent=MS.gene036405.t1 |
Gene Sequence |
Protein sequence |