Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81545.t1 | RHN74026.1 | 92.8 | 251 | 3 | 1 | 1 | 236 | 1 | 251 | 5.10E-84 | 320.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81545.t1 | O81918 | 80.6 | 222 | 43 | 0 | 1 | 222 | 1 | 222 | 7.0e-58 | 225.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81545.t1 | A0A396J742 | 92.8 | 251 | 3 | 1 | 1 | 236 | 1 | 251 | 3.7e-84 | 320.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049411 | MS.gene81545 | 0.811039 | 8.55E-51 | -1.69E-46 |
MS.gene050752 | MS.gene81545 | 0.801628 | 8.23E-49 | -1.69E-46 |
MS.gene050955 | MS.gene81545 | 0.821364 | 4.20E-53 | -1.69E-46 |
MS.gene052479 | MS.gene81545 | 0.824972 | 6.04E-54 | -1.69E-46 |
MS.gene054403 | MS.gene81545 | 0.806263 | 8.96E-50 | -1.69E-46 |
MS.gene055555 | MS.gene81545 | 0.833312 | 5.73E-56 | -1.69E-46 |
MS.gene055765 | MS.gene81545 | 0.823268 | 1.52E-53 | -1.69E-46 |
MS.gene057694 | MS.gene81545 | 0.820171 | 7.90E-53 | -1.69E-46 |
MS.gene057705 | MS.gene81545 | 0.8268 | 2.22E-54 | -1.69E-46 |
MS.gene059227 | MS.gene81545 | 0.817561 | 3.09E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene81545 | MS.gene041769 | PPI |
MS.gene81545 | MS.gene037669 | PPI |
MS.gene81545 | MS.gene34006 | PPI |
MS.gene81545 | MS.gene074183 | PPI |
MS.gene81545 | MS.gene016105 | PPI |
MS.gene47052 | MS.gene81545 | PPI |
MS.gene036405 | MS.gene81545 | PPI |
MS.gene81545 | MS.gene68663 | PPI |
MS.gene81545 | MS.gene001097 | PPI |
MS.gene057052 | MS.gene81545 | PPI |
MS.gene005994 | MS.gene81545 | PPI |
MS.gene81545 | MS.gene39764 | PPI |
MS.gene005996 | MS.gene81545 | PPI |
MS.gene37588 | MS.gene81545 | PPI |
MS.gene33103 | MS.gene81545 | PPI |
MS.gene81545 | MS.gene34008 | PPI |
MS.gene81545 | MS.gene54763 | PPI |
MS.gene47051 | MS.gene81545 | PPI |
MS.gene041771 | MS.gene81545 | PPI |
MS.gene001098 | MS.gene81545 | PPI |
MS.gene81545 | MS.gene058469 | PPI |
MS.gene81545 | MS.gene73243 | PPI |
MS.gene016914 | MS.gene81545 | PPI |
MS.gene006000 | MS.gene81545 | PPI |
MS.gene81545 | MS.gene048096 | PPI |
MS.gene043773 | MS.gene81545 | PPI |
MS.gene81545 | MS.gene041766 | PPI |
MS.gene81545 | MS.gene074184 | PPI |
MS.gene81545 | MS.gene54761 | PPI |
MS.gene81545 | MS.gene92572 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81545.t1 | MTR_2g461200 | 96.889 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 6.99e-156 | 432 |
MS.gene81545.t1 | MTR_2g461200 | 96.889 | 225 | 7 | 0 | 1 | 225 | 1 | 225 | 1.19e-155 | 432 |
MS.gene81545.t1 | MTR_4g019610 | 92.444 | 225 | 17 | 0 | 1 | 225 | 1 | 225 | 1.13e-126 | 358 |
MS.gene81545.t1 | MTR_4g019610 | 92.444 | 225 | 17 | 0 | 1 | 225 | 1 | 225 | 1.71e-126 | 359 |
MS.gene81545.t1 | MTR_2g461200 | 97.790 | 181 | 4 | 0 | 1 | 181 | 1 | 181 | 2.22e-124 | 350 |
MS.gene81545.t1 | MTR_5g088660 | 53.778 | 225 | 96 | 3 | 1 | 225 | 1 | 217 | 2.34e-70 | 215 |
MS.gene81545.t1 | MTR_5g088685 | 75.000 | 48 | 12 | 0 | 133 | 180 | 2 | 49 | 6.04e-18 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene81545.t1 | AT2G18110 | 77.273 | 220 | 49 | 1 | 7 | 225 | 6 | 225 | 5.08e-101 | 293 |
MS.gene81545.t1 | AT1G30230 | 76.364 | 220 | 51 | 1 | 7 | 225 | 6 | 225 | 3.01e-97 | 283 |
MS.gene81545.t1 | AT1G30230 | 76.364 | 220 | 51 | 1 | 7 | 225 | 6 | 225 | 6.63e-97 | 284 |
MS.gene81545.t1 | AT5G12110 | 57.205 | 229 | 87 | 3 | 1 | 225 | 1 | 222 | 4.21e-70 | 214 |
MS.gene81545.t1 | AT5G19510 | 54.667 | 225 | 95 | 2 | 1 | 225 | 1 | 218 | 3.70e-62 | 194 |
Find 61 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGACTGTAGTGGTGTTTC+TGG | 0.118442 | 2.2:-33478459 | MS.gene81545:intron |
TTCAGTTGGAAGGGTTGTTT+TGG | 0.210487 | 2.2:-33478055 | MS.gene81545:CDS |
TCAGTTCCATCATATGAATA+TGG | 0.245099 | 2.2:-33478650 | MS.gene81545:CDS |
TCTTGTTTCCGTTGACAATA+TGG | 0.314177 | 2.2:-33477403 | MS.gene81545:CDS |
TATAACCTTAAGGCTGAATC+TGG | 0.331891 | 2.2:-33478878 | MS.gene81545:CDS |
GCGGCCTTTGTGTCAGAAAC+TGG | 0.339173 | 2.2:+33478375 | None:intergenic |
GCAGCAGCTGTGAAGGCATC+TGG | 0.375915 | 2.2:-33478270 | MS.gene81545:CDS |
GAAGAAGGCAGCTGAGGAAC+GGG | 0.395604 | 2.2:-33478292 | MS.gene81545:CDS |
TCAACCCAGATTCAGCCTTA+AGG | 0.411025 | 2.2:+33478873 | None:intergenic |
GATGACGATGTTGATTTGTT+TGG | 0.412687 | 2.2:-33478333 | MS.gene81545:CDS |
TCAAATTATGCTTACTATTG+TGG | 0.416944 | 2.2:-33477430 | MS.gene81545:CDS |
TAGCCAAACTTGTTCCTGTT+GGG | 0.428630 | 2.2:-33477470 | MS.gene81545:CDS |
GGTGTTTCTGGTGAGGGATC+TGG | 0.436594 | 2.2:-33478447 | MS.gene81545:CDS |
GTACCCAACAGGAACAAGTT+TGG | 0.443426 | 2.2:+33477467 | None:intergenic |
ACTCTGGACATACTCATTGA+TGG | 0.454635 | 2.2:+33477356 | None:intergenic |
TTCTTGATACCGTACCCAAC+AGG | 0.456829 | 2.2:+33477456 | None:intergenic |
CAGTTCCATCATATGAATAT+GGG | 0.459928 | 2.2:-33478649 | MS.gene81545:CDS |
TGGGAAATCATCTGTATTGT+TGG | 0.466041 | 2.2:-33478138 | MS.gene81545:CDS |
TTCCGTTGACAATATGGTTG+AGG | 0.479405 | 2.2:-33477397 | MS.gene81545:CDS |
AGTTACACTCTATAACCTTA+AGG | 0.486396 | 2.2:-33478888 | MS.gene81545:CDS |
TTCTTCAAGCTTCTTCATGT+CGG | 0.497830 | 2.2:+33478091 | None:intergenic |
TTCGTATAACATGGAGATCA+TGG | 0.498458 | 2.2:-33477201 | MS.gene81545:CDS |
AGCAGTGAGATCTGTTCAGT+TGG | 0.499725 | 2.2:-33478069 | MS.gene81545:CDS |
ACATTCCCATATTCATATGA+TGG | 0.500557 | 2.2:+33478644 | None:intergenic |
TGATGTCATCCTTTGAAGCT+TGG | 0.506163 | 2.2:+33478693 | None:intergenic |
GTGAGATCTGTTCAGTTGGA+AGG | 0.509565 | 2.2:-33478065 | MS.gene81545:CDS |
ATAGCCAAACTTGTTCCTGT+TGG | 0.511083 | 2.2:-33477471 | MS.gene81545:intron |
AGAAGAAGGCAGCTGAGGAA+CGG | 0.514292 | 2.2:-33478293 | MS.gene81545:CDS |
AAACTTGTTCCTGTTGGGTA+CGG | 0.517929 | 2.2:-33477465 | MS.gene81545:CDS |
TATTCATATGATGGAACTGA+TGG | 0.520528 | 2.2:+33478653 | None:intergenic |
AGAGACTGAGGAAGAGAAGA+AGG | 0.523236 | 2.2:-33478307 | MS.gene81545:CDS |
CTTACACGCAGTTACATCAC+TGG | 0.529989 | 2.2:-33478830 | MS.gene81545:CDS |
CACAAAGGCCGCTGAAGCTG+AGG | 0.532286 | 2.2:-33478364 | MS.gene81545:CDS |
GGAACGGGCAGCAGCTGTGA+AGG | 0.532840 | 2.2:-33478277 | MS.gene81545:CDS |
GTTTAGGTACCAAGCTTCAA+AGG | 0.538083 | 2.2:-33478702 | MS.gene81545:intron |
CTCTGGACATACTCATTGAT+GGG | 0.540335 | 2.2:+33477357 | None:intergenic |
TGATGTAACTGCGTGTAAGA+AGG | 0.549903 | 2.2:+33478834 | None:intergenic |
TGTAGTGGTGTTTCTGGTGA+GGG | 0.560203 | 2.2:-33478453 | MS.gene81545:intron |
TATAACATGGAGATCATGGT+AGG | 0.560815 | 2.2:-33477197 | MS.gene81545:CDS |
ATCTTCATCCTCAGCTTCAG+CGG | 0.564518 | 2.2:+33478356 | None:intergenic |
ATGTCGGTCTCATCATCCCA+TGG | 0.564640 | 2.2:+33478107 | None:intergenic |
CACTGTGGAATCTTCTCTTG+TGG | 0.565195 | 2.2:-33478421 | MS.gene81545:CDS |
TGAGATCTGTTCAGTTGGAA+GGG | 0.572783 | 2.2:-33478064 | MS.gene81545:CDS |
CTGTAGTGGTGTTTCTGGTG+AGG | 0.577236 | 2.2:-33478454 | MS.gene81545:intron |
ATCCTCAACCATATTGTCAA+CGG | 0.584339 | 2.2:+33477395 | None:intergenic |
ATAACATGGAGATCATGGTA+GGG | 0.587204 | 2.2:-33477196 | MS.gene81545:CDS |
ATAACCTTAAGGCTGAATCT+GGG | 0.592348 | 2.2:-33478877 | MS.gene81545:CDS |
ATGAATATGGGAATGTTGCT+AGG | 0.597917 | 2.2:-33478637 | MS.gene81545:CDS |
TAACATGGAGATCATGGTAG+GGG | 0.599825 | 2.2:-33477195 | MS.gene81545:CDS |
GGAAGAGAAGAAGGCAGCTG+AGG | 0.604357 | 2.2:-33478298 | MS.gene81545:CDS |
TATTGTTGGATGTGAAGCCA+TGG | 0.605647 | 2.2:-33478124 | MS.gene81545:CDS |
TGTGTCAGAAACTGGAGGAG+TGG | 0.624152 | 2.2:+33478383 | None:intergenic |
TTACACGCAGTTACATCACT+GGG | 0.625744 | 2.2:-33478829 | MS.gene81545:intron |
TCCTCCAGTTTCTGACACAA+AGG | 0.638013 | 2.2:-33478379 | MS.gene81545:CDS |
AATCTGCAATTCGTATAACA+TGG | 0.639814 | 2.2:-33477210 | MS.gene81545:CDS |
ATTGTTGGATGTGAAGCCAT+GGG | 0.652625 | 2.2:-33478123 | MS.gene81545:CDS |
GCCTTTGTGTCAGAAACTGG+AGG | 0.658117 | 2.2:+33478378 | None:intergenic |
TGAGGGATCTGGTGTCACTG+TGG | 0.668824 | 2.2:-33478436 | MS.gene81545:CDS |
TTTGTTTGGTGAAGAGACTG+AGG | 0.673347 | 2.2:-33478319 | MS.gene81545:CDS |
AACATGGAGATCATGGTAGG+GGG | 0.694332 | 2.2:-33477194 | MS.gene81545:CDS |
AATATGGGAATGTTGCTAGG+TGG | 0.778608 | 2.2:-33478634 | MS.gene81545:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTATTGTATACTATTTTTCA+AGG | - | chr2.2:33478117-33478136 | MS.gene81545:CDS | 15.0% |
!! | AAAATAAGATATTTCGCTAT+TGG | + | chr2.2:33478445-33478464 | None:intergenic | 20.0% |
!! | ATAAACTAATATCAGAATCA+TGG | + | chr2.2:33478570-33478589 | None:intergenic | 20.0% |
!! | ATAGTATACAATAAACTGAA+TGG | + | chr2.2:33478111-33478130 | None:intergenic | 20.0% |
!! | TGAAAAAGATAATTGCATAA+CGG | + | chr2.2:33477573-33477592 | None:intergenic | 20.0% |
!! | TTCATATCCTCATAATTATT+TGG | - | chr2.2:33477852-33477871 | MS.gene81545:intron | 20.0% |
!!! | TGTTTTTATTTGATCTGTTT+AGG | - | chr2.2:33477350-33477369 | MS.gene81545:intron | 20.0% |
! | TAATGCCATATCATATTCTT+TGG | - | chr2.2:33478830-33478849 | MS.gene81545:CDS | 25.0% |
! | TCAAATTATGCTTACTATTG+TGG | - | chr2.2:33478638-33478657 | MS.gene81545:CDS | 25.0% |
! | TCACATATAATTGACAAAGA+TGG | + | chr2.2:33477506-33477525 | None:intergenic | 25.0% |
!! | ATAATTATTTGGAATCTGGT+TGG | - | chr2.2:33477863-33477882 | MS.gene81545:intron | 25.0% |
!! | TTGCTTACAGATTTTATTGA+AGG | + | chr2.2:33478751-33478770 | None:intergenic | 25.0% |
!!! | ATAAGTTTGTTTTCCACTAT+TGG | - | chr2.2:33478369-33478388 | MS.gene81545:CDS | 25.0% |
!!! | ATATGTTTGTTTTCCACTAT+TGG | - | chr2.2:33478181-33478200 | MS.gene81545:intron | 25.0% |
!!! | TAAGTTTGTTTTCCACTATT+GGG | - | chr2.2:33478370-33478389 | MS.gene81545:CDS | 25.0% |
!!! | TATGTTTGTTTTCCACTATT+GGG | - | chr2.2:33478182-33478201 | MS.gene81545:intron | 25.0% |
!!! | TTCAGATTTTATTTGTCTGT+TGG | - | chr2.2:33478773-33478792 | MS.gene81545:intron | 25.0% |
AATCTGCAATTCGTATAACA+TGG | - | chr2.2:33478858-33478877 | MS.gene81545:CDS | 30.0% | |
ACATTCCCATATTCATATGA+TGG | + | chr2.2:33477427-33477446 | None:intergenic | 30.0% | |
AGTTACACTCTATAACCTTA+AGG | - | chr2.2:33477180-33477199 | MS.gene81545:CDS | 30.0% | |
ATGGTGCACAAATAAGATAT+TGG | - | chr2.2:33478336-33478355 | MS.gene81545:CDS | 30.0% | |
CAGTTCCATCATATGAATAT+GGG | - | chr2.2:33477419-33477438 | MS.gene81545:CDS | 30.0% | |
CCAGATTCCAAATAATTATG+AGG | + | chr2.2:33477862-33477881 | None:intergenic | 30.0% | |
TATAATTGACAAAGATGGCA+AGG | + | chr2.2:33477501-33477520 | None:intergenic | 30.0% | |
TCAGTTCCATCATATGAATA+TGG | - | chr2.2:33477418-33477437 | MS.gene81545:CDS | 30.0% | |
TCATATCTCACTTGATCTAA+TGG | - | chr2.2:33478218-33478237 | MS.gene81545:intron | 30.0% | |
! | AACAAGTTTGCTTTCACTAT+TGG | + | chr2.2:33478257-33478276 | None:intergenic | 30.0% |
! | CCTCATAATTATTTGGAATC+TGG | - | chr2.2:33477859-33477878 | MS.gene81545:intron | 30.0% |
! | TATTCATATGATGGAACTGA+TGG | + | chr2.2:33477418-33477437 | None:intergenic | 30.0% |
! | TGGACATCAATTTAGAGTAT+TGG | - | chr2.2:33477883-33477902 | MS.gene81545:intron | 30.0% |
!!! | ATTTTTCAAGGCTATGTCTA+CGG | - | chr2.2:33478129-33478148 | MS.gene81545:CDS | 30.0% |
!!! | TATTTTTCAAGGCATGTCTA+TGG | - | chr2.2:33478317-33478336 | MS.gene81545:CDS | 30.0% |
ACGGTGCACAAATAAGATAT+TGG | - | chr2.2:33478148-33478167 | MS.gene81545:intron | 35.0% | |
ATAACATGGAGATCATGGTA+GGG | - | chr2.2:33478872-33478891 | MS.gene81545:CDS | 35.0% | |
ATAACCTTAAGGCTGAATCT+GGG | - | chr2.2:33477191-33477210 | MS.gene81545:CDS | 35.0% | |
ATCCTCAACCATATTGTCAA+CGG | + | chr2.2:33478676-33478695 | None:intergenic | 35.0% | |
ATGAATATGGGAATGTTGCT+AGG | - | chr2.2:33477431-33477450 | MS.gene81545:CDS | 35.0% | |
CTGCACCAAAGAATATGATA+TGG | + | chr2.2:33478838-33478857 | None:intergenic | 35.0% | |
GTGGAAAACAAACATATGCA+TGG | + | chr2.2:33478178-33478197 | None:intergenic | 35.0% | |
TAGATCAAGCGAGATATGAA+GGG | + | chr2.2:33478405-33478424 | None:intergenic | 35.0% | |
TATAACATGGAGATCATGGT+AGG | - | chr2.2:33478871-33478890 | MS.gene81545:CDS | 35.0% | |
TATAACCTTAAGGCTGAATC+TGG | - | chr2.2:33477190-33477209 | MS.gene81545:CDS | 35.0% | |
TATCTCACTTGATCTAATGG+TGG | - | chr2.2:33478221-33478240 | MS.gene81545:intron | 35.0% | |
TCATATCTCGCTTGATCTAA+TGG | - | chr2.2:33478406-33478425 | MS.gene81545:CDS | 35.0% | |
TGGGAAATCATCTGTATTGT+TGG | - | chr2.2:33477930-33477949 | MS.gene81545:intron | 35.0% | |
TTAGATCAAGCGAGATATGA+AGG | + | chr2.2:33478406-33478425 | None:intergenic | 35.0% | |
TTCGTATAACATGGAGATCA+TGG | - | chr2.2:33478867-33478886 | MS.gene81545:CDS | 35.0% | |
TTCTTCAAGCTTCTTCATGT+CGG | + | chr2.2:33477980-33477999 | None:intergenic | 35.0% | |
! | AGTGAAAGCAAACTTGTTCA+CGG | - | chr2.2:33478259-33478278 | MS.gene81545:CDS | 35.0% |
! | TCTTGTTTCCGTTGACAATA+TGG | - | chr2.2:33478665-33478684 | MS.gene81545:CDS | 35.0% |
! | TTTCTGCTGATTGCATTATC+AGG | - | chr2.2:33477907-33477926 | MS.gene81545:intron | 35.0% |
!! | ATTGAGTTTTGTGACTGTAG+TGG | - | chr2.2:33477600-33477619 | MS.gene81545:intron | 35.0% |
!! | GATGACGATGTTGATTTGTT+TGG | - | chr2.2:33477735-33477754 | MS.gene81545:intron | 35.0% |
AATATGGGAATGTTGCTAGG+TGG | - | chr2.2:33477434-33477453 | MS.gene81545:CDS | 40.0% | |
ACTCTGGACATACTCATTGA+TGG | + | chr2.2:33478715-33478734 | None:intergenic | 40.0% | |
ATTGTTGGATGTGAAGCCAT+GGG | - | chr2.2:33477945-33477964 | MS.gene81545:intron | 40.0% | |
CTCTGGACATACTCATTGAT+GGG | + | chr2.2:33478714-33478733 | None:intergenic | 40.0% | |
GTTTAGGTACCAAGCTTCAA+AGG | - | chr2.2:33477366-33477385 | MS.gene81545:intron | 40.0% | |
TAACATGGAGATCATGGTAG+GGG | - | chr2.2:33478873-33478892 | MS.gene81545:CDS | 40.0% | |
TATCTCGCTTGATCTAATGG+TGG | - | chr2.2:33478409-33478428 | MS.gene81545:CDS | 40.0% | |
TATTGTTGGATGTGAAGCCA+TGG | - | chr2.2:33477944-33477963 | MS.gene81545:intron | 40.0% | |
TGAGATCTGTTCAGTTGGAA+GGG | - | chr2.2:33478004-33478023 | MS.gene81545:intron | 40.0% | |
TGATGTAACTGCGTGTAAGA+AGG | + | chr2.2:33477237-33477256 | None:intergenic | 40.0% | |
TTACACGCAGTTACATCACT+GGG | - | chr2.2:33477239-33477258 | MS.gene81545:intron | 40.0% | |
TTCCGTTGACAATATGGTTG+AGG | - | chr2.2:33478671-33478690 | MS.gene81545:CDS | 40.0% | |
! | AAACTTGTTCCTGTTGGGTA+CGG | - | chr2.2:33478603-33478622 | MS.gene81545:CDS | 40.0% |
! | ATAGCCAAACTTGTTCCTGT+TGG | - | chr2.2:33478597-33478616 | MS.gene81545:intron | 40.0% |
! | TAGCCAAACTTGTTCCTGTT+GGG | - | chr2.2:33478598-33478617 | MS.gene81545:intron | 40.0% |
! | TGCTGATTGCATTATCAGGT+GGG | - | chr2.2:33477911-33477930 | MS.gene81545:intron | 40.0% |
! | TTCAGTTGGAAGGGTTGTTT+TGG | - | chr2.2:33478013-33478032 | MS.gene81545:intron | 40.0% |
! | TTTGTTTGGTGAAGAGACTG+AGG | - | chr2.2:33477749-33477768 | MS.gene81545:intron | 40.0% |
!! | TCAGTTGGAAGGGTTGTTTT+GGG | - | chr2.2:33478014-33478033 | MS.gene81545:intron | 40.0% |
!! | TGATGTCATCCTTTGAAGCT+TGG | + | chr2.2:33477378-33477397 | None:intergenic | 40.0% |
AACATGGAGATCATGGTAGG+GGG | - | chr2.2:33478874-33478893 | MS.gene81545:CDS | 45.0% | |
AGAGACTGAGGAAGAGAAGA+AGG | - | chr2.2:33477761-33477780 | MS.gene81545:intron | 45.0% | |
AGCAGTGAGATCTGTTCAGT+TGG | - | chr2.2:33477999-33478018 | MS.gene81545:intron | 45.0% | |
ATCTTCATCCTCAGCTTCAG+CGG | + | chr2.2:33477715-33477734 | None:intergenic | 45.0% | |
CACTGTGGAATCTTCTCTTG+TGG | - | chr2.2:33477647-33477666 | MS.gene81545:intron | 45.0% | |
CTTACACGCAGTTACATCAC+TGG | - | chr2.2:33477238-33477257 | MS.gene81545:intron | 45.0% | |
GCGACTTAATGACCCAATAG+TGG | + | chr2.2:33478197-33478216 | None:intergenic | 45.0% | |
GGGACTTATTGACCCAATAG+TGG | + | chr2.2:33478385-33478404 | None:intergenic | 45.0% | |
GTACCCAACAGGAACAAGTT+TGG | + | chr2.2:33478604-33478623 | None:intergenic | 45.0% | |
GTGAGATCTGTTCAGTTGGA+AGG | - | chr2.2:33478003-33478022 | MS.gene81545:intron | 45.0% | |
TCAACCCAGATTCAGCCTTA+AGG | + | chr2.2:33477198-33477217 | None:intergenic | 45.0% | |
TCCTCCAGTTTCTGACACAA+AGG | - | chr2.2:33477689-33477708 | MS.gene81545:intron | 45.0% | |
TGTCCAGAGTTGTGACATTG+TGG | - | chr2.2:33478725-33478744 | MS.gene81545:intron | 45.0% | |
TGTGACTGTAGTGGTGTTTC+TGG | - | chr2.2:33477609-33477628 | MS.gene81545:intron | 45.0% | |
TTCTTGATACCGTACCCAAC+AGG | + | chr2.2:33478615-33478634 | None:intergenic | 45.0% | |
! | CTGCTGATTGCATTATCAGG+TGG | - | chr2.2:33477910-33477929 | MS.gene81545:intron | 45.0% |
!! | CAGTTGGAAGGGTTGTTTTG+GGG | - | chr2.2:33478015-33478034 | MS.gene81545:intron | 45.0% |
!! | TGTAGTGGTGTTTCTGGTGA+GGG | - | chr2.2:33477615-33477634 | MS.gene81545:intron | 45.0% |
ACGCAGTTACATCACTGGGT+AGG | - | chr2.2:33477243-33477262 | MS.gene81545:intron | 50.0% | |
AGAAGAAGGCAGCTGAGGAA+CGG | - | chr2.2:33477775-33477794 | MS.gene81545:intron | 50.0% | |
AGGCCACAATGTCACAACTC+TGG | + | chr2.2:33478731-33478750 | None:intergenic | 50.0% | |
ATGTCGGTCTCATCATCCCA+TGG | + | chr2.2:33477964-33477983 | None:intergenic | 50.0% | |
GCCTTTGTGTCAGAAACTGG+AGG | + | chr2.2:33477693-33477712 | None:intergenic | 50.0% | |
TGTGTCAGAAACTGGAGGAG+TGG | + | chr2.2:33477688-33477707 | None:intergenic | 50.0% | |
!! | CTGTAGTGGTGTTTCTGGTG+AGG | - | chr2.2:33477614-33477633 | MS.gene81545:intron | 50.0% |
GAAGAAGGCAGCTGAGGAAC+GGG | - | chr2.2:33477776-33477795 | MS.gene81545:intron | 55.0% | |
GCGGCCTTTGTGTCAGAAAC+TGG | + | chr2.2:33477696-33477715 | None:intergenic | 55.0% | |
GGAAGAGAAGAAGGCAGCTG+AGG | - | chr2.2:33477770-33477789 | MS.gene81545:intron | 55.0% | |
!! | GGTGTTTCTGGTGAGGGATC+TGG | - | chr2.2:33477621-33477640 | MS.gene81545:intron | 55.0% |
!! | TGAGGGATCTGGTGTCACTG+TGG | - | chr2.2:33477632-33477651 | MS.gene81545:intron | 55.0% |
CACAAAGGCCGCTGAAGCTG+AGG | - | chr2.2:33477704-33477723 | MS.gene81545:intron | 60.0% | |
!! | GCAGCAGCTGTGAAGGCATC+TGG | - | chr2.2:33477798-33477817 | MS.gene81545:intron | 60.0% |
GGAACGGGCAGCAGCTGTGA+AGG | - | chr2.2:33477791-33477810 | MS.gene81545:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 33477175 | 33478915 | 33477175 | ID=MS.gene81545 |
chr2.2 | mRNA | 33477175 | 33478915 | 33477175 | ID=MS.gene81545.t1;Parent=MS.gene81545 |
chr2.2 | exon | 33478830 | 33478915 | 33478830 | ID=MS.gene81545.t1.exon1;Parent=MS.gene81545.t1 |
chr2.2 | CDS | 33478830 | 33478915 | 33478830 | ID=cds.MS.gene81545.t1;Parent=MS.gene81545.t1 |
chr2.2 | exon | 33478602 | 33478718 | 33478602 | ID=MS.gene81545.t1.exon2;Parent=MS.gene81545.t1 |
chr2.2 | CDS | 33478602 | 33478718 | 33478602 | ID=cds.MS.gene81545.t1;Parent=MS.gene81545.t1 |
chr2.2 | exon | 33478256 | 33478470 | 33478256 | ID=MS.gene81545.t1.exon3;Parent=MS.gene81545.t1 |
chr2.2 | CDS | 33478256 | 33478470 | 33478256 | ID=cds.MS.gene81545.t1;Parent=MS.gene81545.t1 |
chr2.2 | exon | 33478048 | 33478161 | 33478048 | ID=MS.gene81545.t1.exon4;Parent=MS.gene81545.t1 |
chr2.2 | CDS | 33478048 | 33478161 | 33478048 | ID=cds.MS.gene81545.t1;Parent=MS.gene81545.t1 |
chr2.2 | exon | 33477369 | 33477489 | 33477369 | ID=MS.gene81545.t1.exon5;Parent=MS.gene81545.t1 |
chr2.2 | CDS | 33477369 | 33477489 | 33477369 | ID=cds.MS.gene81545.t1;Parent=MS.gene81545.t1 |
chr2.2 | exon | 33477175 | 33477232 | 33477175 | ID=MS.gene81545.t1.exon6;Parent=MS.gene81545.t1 |
chr2.2 | CDS | 33477175 | 33477232 | 33477175 | ID=cds.MS.gene81545.t1;Parent=MS.gene81545.t1 |
Gene Sequence |
Protein sequence |