Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39764.t1 | XP_003617173.1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 5.00E-81 | 310.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39764.t1 | Q84WM9 | 71.9 | 228 | 58 | 1 | 1 | 222 | 1 | 228 | 4.6e-59 | 229.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39764.t1 | B7FMR1 | 96.4 | 223 | 7 | 1 | 1 | 222 | 1 | 223 | 3.6e-81 | 310.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050252 | MS.gene39764 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene054937 | MS.gene39764 | 0.825303 | 5.04E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene39764 | 0.99769 | 2.97E-247 | -1.69E-46 |
| MS.gene057092 | MS.gene39764 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene058560 | MS.gene39764 | 0.803968 | 2.71E-49 | -1.69E-46 |
| MS.gene060574 | MS.gene39764 | 0.849214 | 3.73E-60 | -1.69E-46 |
| MS.gene061145 | MS.gene39764 | 0.802051 | 6.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene37588 | MS.gene39764 | PPI |
| MS.gene81545 | MS.gene39764 | PPI |
| MS.gene016914 | MS.gene39764 | PPI |
| MS.gene39764 | MS.gene73243 | PPI |
| MS.gene043773 | MS.gene39764 | PPI |
| MS.gene39764 | MS.gene048096 | PPI |
| MS.gene39764 | MS.gene92572 | PPI |
| MS.gene39764 | MS.gene037669 | PPI |
| MS.gene036405 | MS.gene39764 | PPI |
| MS.gene057052 | MS.gene39764 | PPI |
| MS.gene39764 | MS.gene68663 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39764.t1 | MTR_5g088660 | 97.758 | 223 | 4 | 1 | 1 | 222 | 1 | 223 | 5.55e-156 | 431 |
| MS.gene39764.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 5.57e-76 | 229 |
| MS.gene39764.t1 | MTR_4g019610 | 63.636 | 231 | 75 | 3 | 1 | 222 | 1 | 231 | 1.24e-75 | 229 |
| MS.gene39764.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 5.51e-74 | 224 |
| MS.gene39764.t1 | MTR_2g461200 | 63.203 | 231 | 76 | 4 | 1 | 222 | 1 | 231 | 7.73e-74 | 224 |
| MS.gene39764.t1 | MTR_2g461200 | 55.556 | 180 | 71 | 4 | 1 | 171 | 1 | 180 | 7.73e-37 | 127 |
| MS.gene39764.t1 | MTR_5g088685 | 90.698 | 43 | 4 | 0 | 129 | 171 | 7 | 49 | 6.43e-21 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39764.t1 | AT5G12110 | 69.737 | 228 | 63 | 3 | 1 | 222 | 1 | 228 | 8.98e-100 | 289 |
| MS.gene39764.t1 | AT5G19510 | 74.107 | 224 | 56 | 2 | 1 | 222 | 1 | 224 | 1.55e-90 | 266 |
| MS.gene39764.t1 | AT2G18110 | 58.079 | 229 | 84 | 4 | 5 | 222 | 4 | 231 | 1.72e-72 | 220 |
| MS.gene39764.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 3.69e-69 | 211 |
| MS.gene39764.t1 | AT1G30230 | 59.211 | 228 | 83 | 4 | 5 | 222 | 4 | 231 | 8.57e-69 | 212 |
Find 51 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTGGACATACTCGTTAAT+TGG | 0.274565 | 5.1:-70105415 | None:intergenic |
| TTAGCAGGTGCTCCTGCAGC+TGG | 0.312184 | 5.1:-70103373 | None:intergenic |
| TTACTCTCTTTCTTCTTTGC+GGG | 0.314961 | 5.1:-70104872 | None:intergenic |
| GATGATGATCTTGACCTCTT+TGG | 0.382817 | 5.1:+70104794 | MS.gene39764:CDS |
| ACATGCTCCCCAGGTTAAAC+CGG | 0.384492 | 5.1:-70105169 | None:intergenic |
| TCCCTCAATGATTTCCTCTC+TGG | 0.387083 | 5.1:+70102700 | MS.gene39764:CDS |
| TTGAAATTCCCGGTTTAACC+TGG | 0.398982 | 5.1:+70105160 | MS.gene39764:CDS |
| CTTACTCTCTTTCTTCTTTG+CGG | 0.404225 | 5.1:-70104873 | None:intergenic |
| GTTCGCAGCGTTGAAATTCC+CGG | 0.412225 | 5.1:+70105150 | MS.gene39764:CDS |
| CAAAGTGTATGGATATGTTT+CGG | 0.431607 | 5.1:+70103104 | MS.gene39764:CDS |
| AAGGATGATATCAAAGTGTA+TGG | 0.446962 | 5.1:+70103093 | MS.gene39764:CDS |
| TAAGAAGGCAGCAGAGGAAA+GGG | 0.453012 | 5.1:+70104835 | MS.gene39764:CDS |
| AGATACAAGATCGTCAATAA+TGG | 0.472820 | 5.1:-70105356 | None:intergenic |
| AGTGGAAGTGCTCCAGCTGC+AGG | 0.481359 | 5.1:+70103361 | MS.gene39764:CDS |
| AAGCTGGTTGCTGTTGGATA+CGG | 0.492710 | 5.1:+70105307 | MS.gene39764:CDS |
| TCCAGAGAGGAAATCATTGA+GGG | 0.494384 | 5.1:-70102701 | None:intergenic |
| TGAGACAGACATGAAGAAGC+TGG | 0.511507 | 5.1:+70105119 | MS.gene39764:CDS |
| TTGCATTGTTACAGCCAAGC+TGG | 0.512626 | 5.1:+70105291 | MS.gene39764:intron |
| TGAAACAGAGGAGGATAAGA+AGG | 0.514826 | 5.1:+70104820 | MS.gene39764:CDS |
| ATAAGAAGGCAGCAGAGGAA+AGG | 0.514986 | 5.1:+70104834 | MS.gene39764:CDS |
| TCATCATCATCTTCAGCAGC+AGG | 0.517729 | 5.1:-70104779 | None:intergenic |
| TTTCAACATACATGCTCCCC+AGG | 0.520277 | 5.1:-70105178 | None:intergenic |
| ATGCGACAATGTCACAGCTC+TGG | 0.527719 | 5.1:-70105432 | None:intergenic |
| ATGTCTGTCTCATCATCCCA+TGG | 0.532053 | 5.1:-70105108 | None:intergenic |
| TTCTGCTTGATGTTAAGCCA+TGG | 0.537433 | 5.1:+70105091 | MS.gene39764:CDS |
| TCTCTTCACATCTTGCTGCA+AGG | 0.539260 | 5.1:+70103175 | MS.gene39764:CDS |
| TGAAATTCCCGGTTTAACCT+GGG | 0.541002 | 5.1:+70105161 | MS.gene39764:CDS |
| TGGCTTAACATCAAGCAGAA+TGG | 0.546092 | 5.1:-70105088 | None:intergenic |
| AGACATGAAGAAGCTGGAAG+AGG | 0.547223 | 5.1:+70105125 | MS.gene39764:CDS |
| TTCCAGAGAGGAAATCATTG+AGG | 0.548339 | 5.1:-70102702 | None:intergenic |
| GAGATACATACAGCTTTAGC+AGG | 0.553332 | 5.1:-70103388 | None:intergenic |
| CTGTGAGTCTTTCTTCAATG+AGG | 0.560347 | 5.1:-70105387 | None:intergenic |
| ATCGTACCAACCAGCAACAT+TGG | 0.561284 | 5.1:-70103148 | None:intergenic |
| CTCAGATCTTCACACAGAAG+AGG | 0.570425 | 5.1:+70102669 | MS.gene39764:CDS |
| ACATTGGCAAAAGCATCACT+TGG | 0.572710 | 5.1:-70103132 | None:intergenic |
| TATTGACGATCTTGTATCTG+TGG | 0.575194 | 5.1:+70105360 | MS.gene39764:CDS |
| GGAGGATAAGAAGGCAGCAG+AGG | 0.581848 | 5.1:+70104829 | MS.gene39764:CDS |
| TCAGATCTTCACACAGAAGA+GGG | 0.583876 | 5.1:+70102670 | MS.gene39764:CDS |
| GCTCAAGGTGTGAAATTCAG+TGG | 0.585505 | 5.1:+70103343 | MS.gene39764:CDS |
| AGTTTCCCTGGAAAAGCTCA+AGG | 0.588553 | 5.1:+70103328 | MS.gene39764:intron |
| TCTGCTTGATGTTAAGCCAT+GGG | 0.593895 | 5.1:+70105092 | MS.gene39764:CDS |
| CATGCTCCCCAGGTTAAACC+GGG | 0.597168 | 5.1:-70105168 | None:intergenic |
| ACAGCCAAGCTGGTTGCTGT+TGG | 0.600555 | 5.1:+70105301 | MS.gene39764:intron |
| TTCTGTGTGAAGATCTGAGA+AGG | 0.604138 | 5.1:-70102665 | None:intergenic |
| GAAATTCCCGGTTTAACCTG+GGG | 0.605534 | 5.1:+70105162 | MS.gene39764:CDS |
| ATTCAGGGATCAATTGACAA+AGG | 0.610977 | 5.1:+70103074 | MS.gene39764:intron |
| CCTCTGTTTCATCACCAAAG+AGG | 0.617705 | 5.1:-70104808 | None:intergenic |
| GAAGGCAGCAGAGGAAAGGG+AGG | 0.617890 | 5.1:+70104838 | MS.gene39764:CDS |
| GTATCCAACAGCAACCAGCT+TGG | 0.624167 | 5.1:-70105305 | None:intergenic |
| CCTCTTTGGTGATGAAACAG+AGG | 0.645851 | 5.1:+70104808 | MS.gene39764:CDS |
| CTTTGGTGATGAAACAGAGG+AGG | 0.675786 | 5.1:+70104811 | MS.gene39764:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTTTTTTTTATAAA+AGG | - | chr5.1:70105244-70105263 | None:intergenic | 0.0% |
| !! | AATATAAAGATCAATAATTA+AGG | - | chr5.1:70103227-70103246 | None:intergenic | 10.0% |
| !! | AATTTCAATAATAAAATTGT+TGG | - | chr5.1:70104260-70104279 | None:intergenic | 10.0% |
| !! | TTTATATTGAAATATGAATT+TGG | + | chr5.1:70103239-70103258 | MS.gene39764:intron | 10.0% |
| !! | CTGAAAGATTATTATTAATT+AGG | + | chr5.1:70103806-70103825 | MS.gene39764:intron | 15.0% |
| !!! | TCTATTTTATTGTTTTGAAT+GGG | + | chr5.1:70103009-70103028 | MS.gene39764:intron | 15.0% |
| !!! | TTCTATTTTATTGTTTTGAA+TGG | + | chr5.1:70103008-70103027 | MS.gene39764:intron | 15.0% |
| !! | AAAAATTTATAACGACTAGA+AGG | - | chr5.1:70104903-70104922 | None:intergenic | 20.0% |
| !! | AAAATTACAAAATGTCTTCT+AGG | - | chr5.1:70104095-70104114 | None:intergenic | 20.0% |
| !! | AACACGAAAAATTAAAATTG+AGG | - | chr5.1:70103414-70103433 | None:intergenic | 20.0% |
| !! | AATCATTGCATGTTTATTAT+AGG | + | chr5.1:70104380-70104399 | MS.gene39764:intron | 20.0% |
| !! | ACACGAAAAATTAAAATTGA+GGG | - | chr5.1:70103413-70103432 | None:intergenic | 20.0% |
| !! | AGTATTATGATTATACAACT+AGG | - | chr5.1:70104473-70104492 | None:intergenic | 20.0% |
| !! | ATTCGAATCAATAAAATAGA+AGG | - | chr5.1:70102860-70102879 | None:intergenic | 20.0% |
| !! | CTGGAAAAAAATATATTTCT+GGG | + | chr5.1:70102719-70102738 | MS.gene39764:CDS | 20.0% |
| !! | GTTATTGTCAATTGTAAATA+TGG | + | chr5.1:70103903-70103922 | MS.gene39764:intron | 20.0% |
| !! | TAAAAAAAGTAGAAATTGAG+AGG | - | chr5.1:70102757-70102776 | None:intergenic | 20.0% |
| !! | TCTGGAAAAAAATATATTTC+TGG | + | chr5.1:70102718-70102737 | MS.gene39764:CDS | 20.0% |
| !!! | AAATATATTTTTTTCCAGAG+AGG | - | chr5.1:70102717-70102736 | None:intergenic | 20.0% |
| !!! | ATTTGGGTTATTTAAATTCA+GGG | + | chr5.1:70103059-70103078 | MS.gene39764:intron | 20.0% |
| !!! | CATCTAACATAATTTGAAAT+CGG | + | chr5.1:70103589-70103608 | MS.gene39764:intron | 20.0% |
| !!! | CTATTTTATTGTTTTGAATG+GGG | + | chr5.1:70103010-70103029 | MS.gene39764:intron | 20.0% |
| !!! | GAAATAAAAATAGAGTACTT+TGG | - | chr5.1:70104207-70104226 | None:intergenic | 20.0% |
| !!! | GAGTCTTTGATTTTATTTAT+TGG | + | chr5.1:70104023-70104042 | MS.gene39764:intron | 20.0% |
| !!! | TCATTAAGTGATATTTTTAC+AGG | + | chr5.1:70105054-70105073 | MS.gene39764:intron | 20.0% |
| !!! | TTTTATTGTTTCTGAGATTT+GGG | + | chr5.1:70102802-70102821 | MS.gene39764:intron | 20.0% |
| !!! | TTTTTACTGTTTTGAGATTT+GGG | + | chr5.1:70102900-70102919 | MS.gene39764:intron | 20.0% |
| !!! | TTTTTATTGTTTCTGAGATT+TGG | + | chr5.1:70102801-70102820 | MS.gene39764:intron | 20.0% |
| !!! | TTTTTTACTGTTTTGAGATT+TGG | + | chr5.1:70102899-70102918 | MS.gene39764:intron | 20.0% |
| ! | AGAATTAATCTGGTAATTAG+TGG | + | chr5.1:70104050-70104069 | MS.gene39764:intron | 25.0% |
| ! | ATCATTGGAATTTATTTGTC+AGG | + | chr5.1:70104751-70104770 | MS.gene39764:intron | 25.0% |
| ! | CATGTTTATTATAGGCAATT+AGG | + | chr5.1:70104388-70104407 | MS.gene39764:intron | 25.0% |
| ! | CTACTAACTAATTTGATCAT+TGG | + | chr5.1:70104736-70104755 | MS.gene39764:intron | 25.0% |
| !! | CTTTCTGAAAATAAATGACT+AGG | - | chr5.1:70103723-70103742 | None:intergenic | 25.0% |
| !! | GATTTGGGTTATTTAAATTC+AGG | + | chr5.1:70103058-70103077 | MS.gene39764:intron | 25.0% |
| !! | TATTGGTCTAAGAATTAATC+TGG | + | chr5.1:70104040-70104059 | MS.gene39764:intron | 25.0% |
| !! | TTGATTCGAATTGAAAAGAT+TGG | + | chr5.1:70102869-70102888 | MS.gene39764:intron | 25.0% |
| !! | TTTTGACATGACATACTATA+AGG | + | chr5.1:70104502-70104521 | MS.gene39764:intron | 25.0% |
| !!! | AAGCATATTTTTGAGAAAAG+TGG | + | chr5.1:70104942-70104961 | MS.gene39764:intron | 25.0% |
| !!! | CATTTTTCAGTAATATACTG+TGG | + | chr5.1:70103519-70103538 | MS.gene39764:intron | 25.0% |
| !!! | GGTTTTTCAAATTCTATGTT+GGG | + | chr5.1:70102823-70102842 | MS.gene39764:intron | 25.0% |
| !!! | GGTTTTTTAGAGTAGTATTA+TGG | + | chr5.1:70104307-70104326 | MS.gene39764:intron | 25.0% |
| !!! | TTAAGTGATATTTTTACAGG+TGG | + | chr5.1:70105057-70105076 | MS.gene39764:intron | 25.0% |
| !!! | TTTTACTGTTTCTGAGATTT+GGG | + | chr5.1:70102951-70102970 | MS.gene39764:intron | 25.0% |
| !!! | TTTTTACTGTTTCTGAGATT+TGG | + | chr5.1:70102950-70102969 | MS.gene39764:intron | 25.0% |
| AAGGATGATATCAAAGTGTA+TGG | + | chr5.1:70103093-70103112 | MS.gene39764:CDS | 30.0% | |
| ACTTAAGATGAAAAGCTTAC+AGG | - | chr5.1:70103674-70103693 | None:intergenic | 30.0% | |
| AGAATACAAAACACTAGAGT+TGG | - | chr5.1:70103987-70104006 | None:intergenic | 30.0% | |
| AGATACAAGATCGTCAATAA+TGG | - | chr5.1:70105359-70105378 | None:intergenic | 30.0% | |
| ATAAACAATCCACACGAAAA+AGG | + | chr5.1:70104136-70104155 | MS.gene39764:intron | 30.0% | |
| CAAAGTGTATGGATATGTTT+CGG | + | chr5.1:70103104-70103123 | MS.gene39764:CDS | 30.0% | |
| GAAAAGCTTACAGGTTTAAA+GGG | - | chr5.1:70103665-70103684 | None:intergenic | 30.0% | |
| GCTAAGTTAGTAACTATGAA+AGG | + | chr5.1:70104592-70104611 | MS.gene39764:intron | 30.0% | |
| TGAAAAGCTTACAGGTTTAA+AGG | - | chr5.1:70103666-70103685 | None:intergenic | 30.0% | |
| ! | AGTAGAAATTGAGAGGATTT+TGG | - | chr5.1:70102750-70102769 | None:intergenic | 30.0% |
| ! | GTAGAAATTGAGAGGATTTT+GGG | - | chr5.1:70102749-70102768 | None:intergenic | 30.0% |
| ! | GTATTTCTTAGAGTATCACT+GGG | + | chr5.1:70103494-70103513 | MS.gene39764:intron | 30.0% |
| ! | TAGAAATTGAGAGGATTTTG+GGG | - | chr5.1:70102748-70102767 | None:intergenic | 30.0% |
| ! | TGTATTTCTTAGAGTATCAC+TGG | + | chr5.1:70103493-70103512 | MS.gene39764:intron | 30.0% |
| !! | GGGTTTTTCAAATTCTATGT+TGG | + | chr5.1:70102822-70102841 | MS.gene39764:intron | 30.0% |
| !! | TTGTTTTTCACTTTTGAGCA+TGG | - | chr5.1:70103952-70103971 | None:intergenic | 30.0% |
| !!! | TTTTGTATGATTAGTTTCCC+TGG | + | chr5.1:70103316-70103335 | MS.gene39764:intron | 30.0% |
| AACCATCCATGTTGCTATAT+TGG | - | chr5.1:70104291-70104310 | None:intergenic | 35.0% | |
| ACCTAAACTTCACAACAACT+TGG | - | chr5.1:70104679-70104698 | None:intergenic | 35.0% | |
| ACTTGGTAAACATCTCTATC+AGG | - | chr5.1:70104559-70104578 | None:intergenic | 35.0% | |
| AGAAAAGTGGTCATTGAGTT+TGG | + | chr5.1:70104955-70104974 | MS.gene39764:intron | 35.0% | |
| AGTTGTATTGAAGTCACTGA+AGG | + | chr5.1:70104711-70104730 | MS.gene39764:intron | 35.0% | |
| ATTCAGGGATCAATTGACAA+AGG | + | chr5.1:70103074-70103093 | MS.gene39764:intron | 35.0% | |
| CAATTCCTATGTGACTGATT+TGG | + | chr5.1:70105264-70105283 | MS.gene39764:intron | 35.0% | |
| CCTAAACTTCACAACAACTT+GGG | - | chr5.1:70104678-70104697 | None:intergenic | 35.0% | |
| CTTACTCTCTTTCTTCTTTG+CGG | - | chr5.1:70104876-70104895 | None:intergenic | 35.0% | |
| GACATGACATACTATAAGGA+TGG | + | chr5.1:70104506-70104525 | MS.gene39764:intron | 35.0% | |
| GCAATGATTAAAAACATGCG+TGG | - | chr5.1:70104369-70104388 | None:intergenic | 35.0% | |
| TAGCTAACAACTATGTCACT+TGG | - | chr5.1:70104576-70104595 | None:intergenic | 35.0% | |
| TATTGACGATCTTGTATCTG+TGG | + | chr5.1:70105360-70105379 | MS.gene39764:CDS | 35.0% | |
| TTACTCTCTTTCTTCTTTGC+GGG | - | chr5.1:70104875-70104894 | None:intergenic | 35.0% | |
| TTATGTCACGTAGAGTTGTA+TGG | + | chr5.1:70103457-70103476 | MS.gene39764:intron | 35.0% | |
| TTTCAGCCAATATAGCAACA+TGG | + | chr5.1:70104282-70104301 | MS.gene39764:intron | 35.0% | |
| !! | GGGTTTTTCAAATTCTATGC+TGG | + | chr5.1:70102920-70102939 | MS.gene39764:intron | 35.0% |
| ACAAGCCAAATCAGTCACAT+AGG | - | chr5.1:70105272-70105291 | None:intergenic | 40.0% | |
| AGCCAATATAGCAACATGGA+TGG | + | chr5.1:70104286-70104305 | MS.gene39764:intron | 40.0% | |
| CCCAAGTTGTTGTGAAGTTT+AGG | + | chr5.1:70104675-70104694 | MS.gene39764:intron | 40.0% | |
| CTATCAGGTTCAACTAACAC+AGG | - | chr5.1:70104544-70104563 | None:intergenic | 40.0% | |
| CTCTGGACATACTCGTTAAT+TGG | - | chr5.1:70105418-70105437 | None:intergenic | 40.0% | |
| CTGTGAGTCTTTCTTCAATG+AGG | - | chr5.1:70105390-70105409 | None:intergenic | 40.0% | |
| GATGATGATCTTGACCTCTT+TGG | + | chr5.1:70104794-70104813 | MS.gene39764:CDS | 40.0% | |
| TCAGATCTTCACACAGAAGA+GGG | + | chr5.1:70102670-70102689 | MS.gene39764:CDS | 40.0% | |
| TCCAGAGAGGAAATCATTGA+GGG | - | chr5.1:70102704-70102723 | None:intergenic | 40.0% | |
| TCTGCTTGATGTTAAGCCAT+GGG | + | chr5.1:70105092-70105111 | MS.gene39764:CDS | 40.0% | |
| TGAAACAGAGGAGGATAAGA+AGG | + | chr5.1:70104820-70104839 | MS.gene39764:CDS | 40.0% | |
| TGAAATTCCCGGTTTAACCT+GGG | + | chr5.1:70105161-70105180 | MS.gene39764:CDS | 40.0% | |
| TGCGTGGATCTCATTAAGAA+AGG | - | chr5.1:70104353-70104372 | None:intergenic | 40.0% | |
| TGGCTTAACATCAAGCAGAA+TGG | - | chr5.1:70105091-70105110 | None:intergenic | 40.0% | |
| TTCCAGAGAGGAAATCATTG+AGG | - | chr5.1:70102705-70102724 | None:intergenic | 40.0% | |
| TTCTGCTTGATGTTAAGCCA+TGG | + | chr5.1:70105091-70105110 | MS.gene39764:CDS | 40.0% | |
| TTCTGTGTGAAGATCTGAGA+AGG | - | chr5.1:70102668-70102687 | None:intergenic | 40.0% | |
| TTGAAATTCCCGGTTTAACC+TGG | + | chr5.1:70105160-70105179 | MS.gene39764:CDS | 40.0% | |
| ! | GAGATACATACAGCTTTAGC+AGG | - | chr5.1:70103391-70103410 | None:intergenic | 40.0% |
| !! | AAGTACTGTCCTTTTTCGTG+TGG | - | chr5.1:70104148-70104167 | None:intergenic | 40.0% |
| !! | ACATTGGCAAAAGCATCACT+TGG | - | chr5.1:70103135-70103154 | None:intergenic | 40.0% |
| AGAAAGGAGCTCTACAGTAC+TGG | - | chr5.1:70104337-70104356 | None:intergenic | 45.0% | |
| AGACATGAAGAAGCTGGAAG+AGG | + | chr5.1:70105125-70105144 | MS.gene39764:CDS | 45.0% | |
| AGTTTCCCTGGAAAAGCTCA+AGG | + | chr5.1:70103328-70103347 | MS.gene39764:intron | 45.0% | |
| ATAAGAAGGCAGCAGAGGAA+AGG | + | chr5.1:70104834-70104853 | MS.gene39764:CDS | 45.0% | |
| ATCGTACCAACCAGCAACAT+TGG | - | chr5.1:70103151-70103170 | None:intergenic | 45.0% | |
| ATGTCTGTCTCATCATCCCA+TGG | - | chr5.1:70105111-70105130 | None:intergenic | 45.0% | |
| CCTCTGTTTCATCACCAAAG+AGG | - | chr5.1:70104811-70104830 | None:intergenic | 45.0% | |
| CTCAGATCTTCACACAGAAG+AGG | + | chr5.1:70102669-70102688 | MS.gene39764:CDS | 45.0% | |
| GAAATTCCCGGTTTAACCTG+GGG | + | chr5.1:70105162-70105181 | MS.gene39764:CDS | 45.0% | |
| GCTCAAGGTGTGAAATTCAG+TGG | + | chr5.1:70103343-70103362 | MS.gene39764:CDS | 45.0% | |
| TAAGAAGGCAGCAGAGGAAA+GGG | + | chr5.1:70104835-70104854 | MS.gene39764:CDS | 45.0% | |
| TCATCATCATCTTCAGCAGC+AGG | - | chr5.1:70104782-70104801 | None:intergenic | 45.0% | |
| TCCCTCAATGATTTCCTCTC+TGG | + | chr5.1:70102700-70102719 | MS.gene39764:CDS | 45.0% | |
| TCTCTTCACATCTTGCTGCA+AGG | + | chr5.1:70103175-70103194 | MS.gene39764:CDS | 45.0% | |
| TGAGACAGACATGAAGAAGC+TGG | + | chr5.1:70105119-70105138 | MS.gene39764:CDS | 45.0% | |
| TTGCATTGTTACAGCCAAGC+TGG | + | chr5.1:70105291-70105310 | MS.gene39764:intron | 45.0% | |
| TTTCAACATACATGCTCCCC+AGG | - | chr5.1:70105181-70105200 | None:intergenic | 45.0% | |
| ! | AAGCTGGTTGCTGTTGGATA+CGG | + | chr5.1:70105307-70105326 | MS.gene39764:CDS | 45.0% |
| ! | CTTTTGCCAATGTTGCTGGT+TGG | + | chr5.1:70103142-70103161 | MS.gene39764:CDS | 45.0% |
| ! | GATGCTTTTGCCAATGTTGC+TGG | + | chr5.1:70103138-70103157 | MS.gene39764:CDS | 45.0% |
| ! | TCACACCTTGAGCTTTTCCA+GGG | - | chr5.1:70103336-70103355 | None:intergenic | 45.0% |
| ! | TTCACACCTTGAGCTTTTCC+AGG | - | chr5.1:70103337-70103356 | None:intergenic | 45.0% |
| !! | CCTCTTTGGTGATGAAACAG+AGG | + | chr5.1:70104808-70104827 | MS.gene39764:CDS | 45.0% |
| !! | CTTTGGTGATGAAACAGAGG+AGG | + | chr5.1:70104811-70104830 | MS.gene39764:CDS | 45.0% |
| ACATGCTCCCCAGGTTAAAC+CGG | - | chr5.1:70105172-70105191 | None:intergenic | 50.0% | |
| ATGCGACAATGTCACAGCTC+TGG | - | chr5.1:70105435-70105454 | None:intergenic | 50.0% | |
| GTATCCAACAGCAACCAGCT+TGG | - | chr5.1:70105308-70105327 | None:intergenic | 50.0% | |
| ! | GTTCGCAGCGTTGAAATTCC+CGG | + | chr5.1:70105150-70105169 | MS.gene39764:CDS | 50.0% |
| ACAGCCAAGCTGGTTGCTGT+TGG | + | chr5.1:70105301-70105320 | MS.gene39764:intron | 55.0% | |
| CATGCTCCCCAGGTTAAACC+GGG | - | chr5.1:70105171-70105190 | None:intergenic | 55.0% | |
| GGAGGATAAGAAGGCAGCAG+AGG | + | chr5.1:70104829-70104848 | MS.gene39764:CDS | 55.0% | |
| GAAGGCAGCAGAGGAAAGGG+AGG | + | chr5.1:70104838-70104857 | MS.gene39764:CDS | 60.0% | |
| TTAGCAGGTGCTCCTGCAGC+TGG | - | chr5.1:70103376-70103395 | None:intergenic | 60.0% | |
| !! | AGTGGAAGTGCTCCAGCTGC+AGG | + | chr5.1:70103361-70103380 | MS.gene39764:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 70102655 | 70105468 | 70102655 | ID=MS.gene39764 |
| chr5.1 | mRNA | 70102655 | 70105468 | 70102655 | ID=MS.gene39764.t1;Parent=MS.gene39764 |
| chr5.1 | exon | 70102655 | 70102740 | 70102655 | ID=MS.gene39764.t1.exon1;Parent=MS.gene39764.t1 |
| chr5.1 | CDS | 70102655 | 70102740 | 70102655 | ID=cds.MS.gene39764.t1;Parent=MS.gene39764.t1 |
| chr5.1 | exon | 70103080 | 70103196 | 70103080 | ID=MS.gene39764.t1.exon2;Parent=MS.gene39764.t1 |
| chr5.1 | CDS | 70103080 | 70103196 | 70103080 | ID=cds.MS.gene39764.t1;Parent=MS.gene39764.t1 |
| chr5.1 | exon | 70103330 | 70103399 | 70103330 | ID=MS.gene39764.t1.exon3;Parent=MS.gene39764.t1 |
| chr5.1 | CDS | 70103330 | 70103399 | 70103330 | ID=cds.MS.gene39764.t1;Parent=MS.gene39764.t1 |
| chr5.1 | exon | 70104773 | 70104890 | 70104773 | ID=MS.gene39764.t1.exon4;Parent=MS.gene39764.t1 |
| chr5.1 | CDS | 70104773 | 70104890 | 70104773 | ID=cds.MS.gene39764.t1;Parent=MS.gene39764.t1 |
| chr5.1 | exon | 70105076 | 70105189 | 70105076 | ID=MS.gene39764.t1.exon5;Parent=MS.gene39764.t1 |
| chr5.1 | CDS | 70105076 | 70105189 | 70105076 | ID=cds.MS.gene39764.t1;Parent=MS.gene39764.t1 |
| chr5.1 | exon | 70105305 | 70105468 | 70105305 | ID=MS.gene39764.t1.exon6;Parent=MS.gene39764.t1 |
| chr5.1 | CDS | 70105305 | 70105468 | 70105305 | ID=cds.MS.gene39764.t1;Parent=MS.gene39764.t1 |
| Gene Sequence |
| Protein sequence |
