Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016938.t1 | XP_003617201.1 | 72.1 | 179 | 50 | 0 | 4 | 182 | 76 | 254 | 8.10E-61 | 243.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016938.t1 | P30183 | 52.6 | 173 | 74 | 3 | 12 | 182 | 88 | 254 | 7.4e-39 | 161.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016938.t1 | G7KCT9 | 72.1 | 179 | 50 | 0 | 4 | 182 | 76 | 254 | 5.8e-61 | 243.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene016938 | MS.gene048913 | PPI |
| MS.gene23576 | MS.gene016938 | PPI |
| MS.gene35086 | MS.gene016938 | PPI |
| MS.gene88440 | MS.gene016938 | PPI |
| MS.gene016938 | MS.gene46805 | PPI |
| MS.gene016938 | MS.gene04020 | PPI |
| MS.gene06057 | MS.gene016938 | PPI |
| MS.gene61084 | MS.gene016938 | PPI |
| MS.gene016938 | MS.gene063809 | PPI |
| MS.gene016938 | MS.gene00063 | PPI |
| MS.gene82304 | MS.gene016938 | PPI |
| MS.gene019336 | MS.gene016938 | PPI |
| MS.gene55900 | MS.gene016938 | PPI |
| MS.gene04541 | MS.gene016938 | PPI |
| MS.gene016544 | MS.gene016938 | PPI |
| MS.gene016703 | MS.gene016938 | PPI |
| MS.gene016938 | MS.gene028366 | PPI |
| MS.gene016938 | MS.gene24450 | PPI |
| MS.gene79044 | MS.gene016938 | PPI |
| MS.gene28739 | MS.gene016938 | PPI |
| MS.gene00474 | MS.gene016938 | PPI |
| MS.gene04501 | MS.gene016938 | PPI |
| MS.gene016938 | MS.gene55782 | PPI |
| MS.gene36424 | MS.gene016938 | PPI |
| MS.gene016938 | MS.gene044085 | PPI |
| MS.gene67884 | MS.gene016938 | PPI |
| MS.gene016938 | MS.gene00478 | PPI |
| MS.gene60448 | MS.gene016938 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016938.t1 | MTR_5g088980 | 72.067 | 179 | 50 | 0 | 4 | 182 | 76 | 254 | 1.93e-85 | 258 |
| MS.gene016938.t1 | MTR_7g089080 | 50.279 | 179 | 85 | 2 | 5 | 182 | 113 | 288 | 9.41e-50 | 172 |
| MS.gene016938.t1 | MTR_5g023790 | 46.018 | 113 | 60 | 1 | 71 | 182 | 150 | 262 | 1.18e-29 | 112 |
| MS.gene016938.t1 | MTR_5g023790 | 46.018 | 113 | 60 | 1 | 71 | 182 | 150 | 262 | 1.93e-29 | 112 |
| MS.gene016938.t1 | MTR_5g023790 | 46.018 | 113 | 60 | 1 | 71 | 182 | 150 | 262 | 2.84e-29 | 112 |
| MS.gene016938.t1 | MTR_8g074000 | 44.545 | 110 | 60 | 1 | 74 | 182 | 157 | 266 | 1.16e-27 | 107 |
| MS.gene016938.t1 | MTR_1g011470 | 40.945 | 127 | 68 | 4 | 58 | 182 | 131 | 252 | 9.31e-22 | 91.3 |
| MS.gene016938.t1 | MTR_3g088415 | 39.130 | 138 | 72 | 4 | 56 | 182 | 195 | 331 | 1.18e-21 | 90.9 |
| MS.gene016938.t1 | MTR_3g088415 | 39.130 | 138 | 72 | 4 | 56 | 182 | 195 | 331 | 1.64e-21 | 90.9 |
| MS.gene016938.t1 | MTR_3g088415 | 39.130 | 138 | 72 | 4 | 56 | 182 | 195 | 331 | 1.68e-21 | 91.3 |
| MS.gene016938.t1 | MTR_3g107970 | 42.593 | 108 | 59 | 3 | 77 | 182 | 198 | 304 | 1.10e-20 | 88.6 |
| MS.gene016938.t1 | MTR_2g102520 | 40.000 | 130 | 70 | 4 | 61 | 182 | 177 | 306 | 1.90e-19 | 85.1 |
| MS.gene016938.t1 | MTR_3g102520 | 40.566 | 106 | 59 | 2 | 81 | 182 | 79 | 184 | 3.28e-18 | 81.3 |
| MS.gene016938.t1 | MTR_3g102530 | 40.566 | 106 | 59 | 1 | 81 | 182 | 72 | 177 | 9.79e-18 | 79.7 |
| MS.gene016938.t1 | MTR_2g102550 | 38.519 | 135 | 77 | 5 | 53 | 182 | 125 | 258 | 1.61e-17 | 79.7 |
| MS.gene016938.t1 | MTR_1g018680 | 41.748 | 103 | 55 | 3 | 84 | 182 | 83 | 184 | 3.14e-17 | 78.6 |
| MS.gene016938.t1 | MTR_3g102510 | 44.565 | 92 | 49 | 2 | 93 | 182 | 74 | 165 | 6.67e-17 | 77.4 |
| MS.gene016938.t1 | MTR_3g060770 | 37.719 | 114 | 63 | 3 | 76 | 184 | 13 | 123 | 8.99e-17 | 76.3 |
| MS.gene016938.t1 | MTR_3g088405 | 37.963 | 108 | 64 | 3 | 77 | 182 | 228 | 334 | 1.24e-16 | 77.0 |
| MS.gene016938.t1 | MTR_3g061680 | 40.196 | 102 | 55 | 2 | 86 | 184 | 15 | 113 | 2.65e-16 | 75.1 |
| MS.gene016938.t1 | MTR_3g060400 | 40.206 | 97 | 52 | 2 | 91 | 184 | 26 | 119 | 1.45e-15 | 73.2 |
| MS.gene016938.t1 | MTR_3g460990 | 40.206 | 97 | 52 | 2 | 91 | 184 | 26 | 119 | 1.45e-15 | 73.2 |
| MS.gene016938.t1 | MTR_5g011900 | 37.500 | 112 | 69 | 1 | 73 | 183 | 50 | 161 | 5.64e-15 | 70.9 |
| MS.gene016938.t1 | MTR_3g060820 | 39.175 | 97 | 53 | 2 | 91 | 184 | 20 | 113 | 6.60e-15 | 71.2 |
| MS.gene016938.t1 | MTR_5g088940 | 55.738 | 61 | 8 | 1 | 114 | 174 | 1 | 42 | 3.90e-14 | 64.3 |
| MS.gene016938.t1 | MTR_2g005960 | 32.800 | 125 | 69 | 4 | 73 | 182 | 102 | 226 | 3.43e-13 | 65.9 |
| MS.gene016938.t1 | MTR_6g045270 | 38.542 | 96 | 53 | 2 | 92 | 184 | 45 | 137 | 1.05e-12 | 65.5 |
| MS.gene016938.t1 | MTR_3g102560 | 47.222 | 72 | 37 | 1 | 112 | 182 | 86 | 157 | 6.07e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene016938.t1 | AT2G26760 | 50.296 | 169 | 74 | 3 | 14 | 182 | 61 | 219 | 1.39e-47 | 159 |
| MS.gene016938.t1 | AT4G37490 | 52.000 | 175 | 72 | 3 | 12 | 182 | 88 | 254 | 2.28e-47 | 160 |
| MS.gene016938.t1 | AT5G06150 | 47.191 | 178 | 94 | 0 | 5 | 182 | 94 | 271 | 4.68e-46 | 154 |
| MS.gene016938.t1 | AT5G06150 | 47.191 | 178 | 94 | 0 | 5 | 182 | 94 | 271 | 5.21e-45 | 154 |
| MS.gene016938.t1 | AT3G11520 | 47.059 | 170 | 70 | 4 | 14 | 182 | 98 | 248 | 3.00e-39 | 137 |
| MS.gene016938.t1 | AT3G11520 | 47.059 | 170 | 70 | 4 | 14 | 182 | 98 | 248 | 3.43e-39 | 138 |
| MS.gene016938.t1 | AT1G34460 | 46.667 | 120 | 64 | 0 | 50 | 169 | 226 | 345 | 5.70e-31 | 117 |
| MS.gene016938.t1 | AT1G34460 | 46.667 | 120 | 64 | 0 | 50 | 169 | 226 | 345 | 5.70e-31 | 117 |
| MS.gene016938.t1 | AT1G76310 | 49.541 | 109 | 53 | 2 | 76 | 182 | 160 | 268 | 1.15e-30 | 114 |
| MS.gene016938.t1 | AT1G34460 | 47.934 | 121 | 54 | 1 | 49 | 169 | 237 | 348 | 1.16e-30 | 116 |
| MS.gene016938.t1 | AT1G34460 | 42.537 | 134 | 77 | 0 | 36 | 169 | 201 | 334 | 1.28e-30 | 116 |
| MS.gene016938.t1 | AT1G34460 | 47.934 | 121 | 54 | 1 | 49 | 169 | 237 | 348 | 1.37e-30 | 116 |
| MS.gene016938.t1 | AT1G34460 | 47.934 | 121 | 54 | 1 | 49 | 169 | 237 | 348 | 1.37e-30 | 116 |
| MS.gene016938.t1 | AT1G34460 | 47.934 | 121 | 54 | 1 | 49 | 169 | 237 | 348 | 1.37e-30 | 116 |
| MS.gene016938.t1 | AT1G34460 | 47.934 | 121 | 54 | 1 | 49 | 169 | 237 | 348 | 1.37e-30 | 116 |
| MS.gene016938.t1 | AT1G34460 | 42.537 | 134 | 77 | 0 | 36 | 169 | 215 | 348 | 1.55e-30 | 116 |
| MS.gene016938.t1 | AT1G76310 | 49.541 | 109 | 53 | 2 | 76 | 182 | 160 | 268 | 3.86e-30 | 114 |
| MS.gene016938.t1 | AT1G76310 | 49.541 | 109 | 53 | 2 | 76 | 182 | 160 | 268 | 5.24e-30 | 114 |
| MS.gene016938.t1 | AT1G76310 | 49.541 | 109 | 53 | 2 | 76 | 182 | 160 | 268 | 5.98e-30 | 114 |
| MS.gene016938.t1 | AT1G20610 | 44.444 | 108 | 59 | 1 | 76 | 182 | 160 | 267 | 9.73e-29 | 110 |
| MS.gene016938.t1 | AT1G16330 | 42.574 | 101 | 57 | 1 | 83 | 182 | 385 | 485 | 6.38e-24 | 98.2 |
| MS.gene016938.t1 | AT1G44110 | 42.857 | 112 | 61 | 3 | 73 | 182 | 175 | 285 | 4.70e-23 | 95.5 |
| MS.gene016938.t1 | AT4G35620 | 50.926 | 108 | 52 | 1 | 76 | 182 | 155 | 262 | 7.43e-23 | 94.0 |
| MS.gene016938.t1 | AT4G35620 | 50.926 | 108 | 52 | 1 | 76 | 182 | 155 | 262 | 9.22e-23 | 94.4 |
| MS.gene016938.t1 | AT1G77390 | 43.119 | 109 | 59 | 3 | 76 | 182 | 162 | 269 | 1.46e-21 | 90.9 |
| MS.gene016938.t1 | AT2G17620 | 46.491 | 114 | 60 | 1 | 70 | 182 | 148 | 261 | 3.61e-21 | 89.7 |
| MS.gene016938.t1 | AT1G47220 | 45.045 | 111 | 56 | 3 | 78 | 184 | 42 | 151 | 7.33e-21 | 88.2 |
| MS.gene016938.t1 | AT5G43080 | 37.500 | 152 | 91 | 4 | 34 | 182 | 28 | 178 | 7.54e-21 | 88.2 |
| MS.gene016938.t1 | AT5G43080 | 37.500 | 152 | 91 | 4 | 34 | 182 | 28 | 178 | 7.75e-21 | 88.2 |
| MS.gene016938.t1 | AT1G80370 | 43.220 | 118 | 64 | 3 | 67 | 182 | 172 | 288 | 8.74e-21 | 89.0 |
| MS.gene016938.t1 | AT1G47230 | 37.226 | 137 | 81 | 3 | 50 | 182 | 53 | 188 | 1.49e-20 | 87.8 |
| MS.gene016938.t1 | AT5G11300 | 40.000 | 125 | 72 | 3 | 60 | 182 | 140 | 263 | 2.74e-20 | 87.4 |
| MS.gene016938.t1 | AT5G11300 | 40.000 | 125 | 72 | 3 | 60 | 182 | 140 | 263 | 3.37e-20 | 87.0 |
| MS.gene016938.t1 | AT1G47210 | 44.037 | 109 | 56 | 3 | 78 | 182 | 88 | 195 | 6.24e-20 | 85.9 |
| MS.gene016938.t1 | AT1G47210 | 42.453 | 106 | 56 | 3 | 78 | 179 | 88 | 192 | 2.66e-19 | 81.3 |
| MS.gene016938.t1 | AT1G47230 | 36.957 | 138 | 81 | 4 | 50 | 182 | 53 | 189 | 7.19e-19 | 83.2 |
| MS.gene016938.t1 | AT5G25380 | 39.450 | 109 | 63 | 3 | 76 | 182 | 157 | 264 | 8.15e-18 | 80.5 |
| MS.gene016938.t1 | AT5G25380 | 39.450 | 109 | 63 | 3 | 76 | 182 | 163 | 270 | 9.10e-18 | 80.5 |
| MS.gene016938.t1 | AT5G25380 | 39.450 | 109 | 63 | 3 | 76 | 182 | 157 | 264 | 9.40e-18 | 80.1 |
| MS.gene016938.t1 | AT5G25380 | 39.450 | 109 | 63 | 3 | 76 | 182 | 157 | 264 | 9.40e-18 | 80.1 |
| MS.gene016938.t1 | AT1G15570 | 42.593 | 108 | 59 | 3 | 77 | 182 | 173 | 279 | 3.67e-17 | 78.6 |
Find 27 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTCAGATAGAAAGTTTC+TGG | 0.200703 | 5.1:+70436992 | None:intergenic |
| CTCCTCTTAGCCGTTATATC+TGG | 0.320074 | 5.1:+70437067 | None:intergenic |
| TTAGCACCTTGTGATGCATT+TGG | 0.341745 | 5.1:+70437733 | None:intergenic |
| AGAGAGGAATTTCAACTTGT+TGG | 0.397326 | 5.1:-70436929 | MS.gene016938:CDS |
| AATTACTGAACTACAAGCTT+TGG | 0.414807 | 5.1:+70437486 | None:intergenic |
| TGCTGATAAGGATAATGAAT+TGG | 0.420062 | 5.1:-70437293 | MS.gene016938:CDS |
| AGTAATTTCAGCTAGAAGAA+AGG | 0.442539 | 5.1:-70437470 | MS.gene016938:intron |
| ACAAGCTTTGGCATTTCTCC+TGG | 0.456328 | 5.1:+70437498 | None:intergenic |
| ACAAGTTGAAATTCCTCTCT+AGG | 0.464310 | 5.1:+70436932 | None:intergenic |
| TTCTTGTGGAATTGTGCTAA+AGG | 0.481895 | 5.1:-70437338 | MS.gene016938:CDS |
| GAACATTGATACTGCTGATA+AGG | 0.486849 | 5.1:-70437305 | MS.gene016938:CDS |
| TGTCAAATTCAGGCTTCTTG+TGG | 0.503060 | 5.1:-70437352 | MS.gene016938:intron |
| GGCTTCACAGCCAGATATAA+CGG | 0.509060 | 5.1:-70437077 | MS.gene016938:CDS |
| GGAGATCAATTCTTGTTGAC+TGG | 0.513087 | 5.1:-70437048 | MS.gene016938:CDS |
| TGTACGAGTACATGATTACA+TGG | 0.521386 | 5.1:-70437098 | MS.gene016938:CDS |
| GAGCTGATGACAATAACTTC+AGG | 0.522150 | 5.1:+70437589 | None:intergenic |
| AGCTTTGGCATTTCTCCTGG+TGG | 0.529215 | 5.1:+70437501 | None:intergenic |
| ACAATAACTTCAGGTACTGT+AGG | 0.532942 | 5.1:+70437598 | None:intergenic |
| TGACTCTTAATATTGTTGAC+CGG | 0.533961 | 5.1:-70436976 | MS.gene016938:CDS |
| GATCAATTCTTGTTGACTGG+TGG | 0.548572 | 5.1:-70437045 | MS.gene016938:CDS |
| CAAGTTGAAATTCCTCTCTA+GGG | 0.572482 | 5.1:+70436933 | None:intergenic |
| TGAAGAATATGCGGAAGTGA+AGG | 0.574870 | 5.1:-70437563 | MS.gene016938:CDS |
| AGCCAGATATAACGGCTAAG+AGG | 0.588033 | 5.1:-70437069 | MS.gene016938:CDS |
| CACAAAAGCTGTCCCTAGAG+AGG | 0.594294 | 5.1:-70436945 | MS.gene016938:CDS |
| CAGCTCAGATGAAGAATATG+CGG | 0.656465 | 5.1:-70437572 | MS.gene016938:CDS |
| AGTTAAGAGAAAGATCCACC+AGG | 0.667171 | 5.1:-70437516 | MS.gene016938:CDS |
| ATGTTTCCAAATGCATCACA+AGG | 0.671375 | 5.1:-70437739 | MS.gene016938:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAATTAGACA+TGG | + | chr5.1:70436972-70436991 | None:intergenic | 10.0% |
| !! | ATATGAGAAATAGAAAATAA+TGG | + | chr5.1:70437193-70437212 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTGTTTTGTTGC+AGG | - | chr5.1:70436983-70437002 | MS.gene016938:CDS | 20.0% |
| ! | TAGTTTCTTTCTTTCTTTGT+TGG | - | chr5.1:70437469-70437488 | MS.gene016938:intron | 25.0% |
| ! | TTGAATTTCATGAATGACTT+AGG | - | chr5.1:70437506-70437525 | MS.gene016938:CDS | 25.0% |
| !! | TCTATTTCTCATATGTGATA+TGG | - | chr5.1:70437199-70437218 | MS.gene016938:intron | 25.0% |
| AATTACTGAACTACAAGCTT+TGG | + | chr5.1:70437148-70437167 | None:intergenic | 30.0% | |
| AGTAATTTCAGCTAGAAGAA+AGG | - | chr5.1:70437161-70437180 | MS.gene016938:intron | 30.0% | |
| CATGGAAATAGATAAACATG+AGG | + | chr5.1:70436954-70436973 | None:intergenic | 30.0% | |
| GAACAATGTTTGTCAAATTC+AGG | - | chr5.1:70437269-70437288 | MS.gene016938:CDS | 30.0% | |
| TGACTCTTAATATTGTTGAC+CGG | - | chr5.1:70437655-70437674 | MS.gene016938:intron | 30.0% | |
| TGCTGATAAGGATAATGAAT+TGG | - | chr5.1:70437338-70437357 | MS.gene016938:CDS | 30.0% | |
| ! | GTGATATGGTTTTCGATTTA+GGG | - | chr5.1:70437213-70437232 | MS.gene016938:intron | 30.0% |
| ! | TGTGATATGGTTTTCGATTT+AGG | - | chr5.1:70437212-70437231 | MS.gene016938:intron | 30.0% |
| !! | TAGGGTTCTATTTTTCAATG+TGG | - | chr5.1:70437231-70437250 | MS.gene016938:intron | 30.0% |
| AGAGAGGAATTTCAACTTGT+TGG | - | chr5.1:70437702-70437721 | MS.gene016938:intron | 35.0% | |
| AGAGTCAGATAGAAAGTTTC+TGG | + | chr5.1:70437642-70437661 | None:intergenic | 35.0% | |
| ATGTTTCCAAATGCATCACA+AGG | - | chr5.1:70436892-70436911 | MS.gene016938:CDS | 35.0% | |
| GAACATTGATACTGCTGATA+AGG | - | chr5.1:70437326-70437345 | MS.gene016938:CDS | 35.0% | |
| TGTACGAGTACATGATTACA+TGG | - | chr5.1:70437533-70437552 | MS.gene016938:CDS | 35.0% | |
| TTCTTGTGGAATTGTGCTAA+AGG | - | chr5.1:70437293-70437312 | MS.gene016938:CDS | 35.0% | |
| ! | ACAAGTTGAAATTCCTCTCT+AGG | + | chr5.1:70437702-70437721 | None:intergenic | 35.0% |
| ! | ACAATAACTTCAGGTACTGT+AGG | + | chr5.1:70437036-70437055 | None:intergenic | 35.0% |
| ! | CAAGTTGAAATTCCTCTCTA+GGG | + | chr5.1:70437701-70437720 | None:intergenic | 35.0% |
| AGTTAAGAGAAAGATCCACC+AGG | - | chr5.1:70437115-70437134 | MS.gene016938:intron | 40.0% | |
| CAGCTCAGATGAAGAATATG+CGG | - | chr5.1:70437059-70437078 | MS.gene016938:CDS | 40.0% | |
| GAGCTGATGACAATAACTTC+AGG | + | chr5.1:70437045-70437064 | None:intergenic | 40.0% | |
| GGAGATCAATTCTTGTTGAC+TGG | - | chr5.1:70437583-70437602 | MS.gene016938:CDS | 40.0% | |
| TGAAGAATATGCGGAAGTGA+AGG | - | chr5.1:70437068-70437087 | MS.gene016938:CDS | 40.0% | |
| TGTCAAATTCAGGCTTCTTG+TGG | - | chr5.1:70437279-70437298 | MS.gene016938:CDS | 40.0% | |
| TTAGCACCTTGTGATGCATT+TGG | + | chr5.1:70436901-70436920 | None:intergenic | 40.0% | |
| ! | GATCAATTCTTGTTGACTGG+TGG | - | chr5.1:70437586-70437605 | MS.gene016938:CDS | 40.0% |
| ! | TTTTGTTGCAGGACTCACTT+AGG | - | chr5.1:70436994-70437013 | MS.gene016938:CDS | 40.0% |
| !! | CGCTTTTTACAAACTCTCTG+AGG | - | chr5.1:70437389-70437408 | MS.gene016938:intron | 40.0% |
| AGCCAGATATAACGGCTAAG+AGG | - | chr5.1:70437562-70437581 | MS.gene016938:CDS | 45.0% | |
| CTCCTCTTAGCCGTTATATC+TGG | + | chr5.1:70437567-70437586 | None:intergenic | 45.0% | |
| GGCTTCACAGCCAGATATAA+CGG | - | chr5.1:70437554-70437573 | MS.gene016938:CDS | 45.0% | |
| ! | ACAAGCTTTGGCATTTCTCC+TGG | + | chr5.1:70437136-70437155 | None:intergenic | 45.0% |
| ! | CAGCTTTTGTGGACAAGAAC+CGG | + | chr5.1:70437677-70437696 | None:intergenic | 45.0% |
| CACAAAAGCTGTCCCTAGAG+AGG | - | chr5.1:70437686-70437705 | MS.gene016938:intron | 50.0% | |
| ! | AGCTTTGGCATTTCTCCTGG+TGG | + | chr5.1:70437133-70437152 | None:intergenic | 50.0% |
| !! | CTCTCTAGGGACAGCTTTTG+TGG | + | chr5.1:70437688-70437707 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 70436886 | 70437767 | 70436886 | ID=MS.gene016938 |
| chr5.1 | mRNA | 70436886 | 70437767 | 70436886 | ID=MS.gene016938.t1;Parent=MS.gene016938 |
| chr5.1 | exon | 70437740 | 70437767 | 70437740 | ID=MS.gene016938.t1.exon1;Parent=MS.gene016938.t1 |
| chr5.1 | CDS | 70437740 | 70437767 | 70437740 | ID=cds.MS.gene016938.t1;Parent=MS.gene016938.t1 |
| chr5.1 | exon | 70437471 | 70437637 | 70437471 | ID=MS.gene016938.t1.exon2;Parent=MS.gene016938.t1 |
| chr5.1 | CDS | 70437471 | 70437637 | 70437471 | ID=cds.MS.gene016938.t1;Parent=MS.gene016938.t1 |
| chr5.1 | exon | 70437243 | 70437362 | 70437243 | ID=MS.gene016938.t1.exon3;Parent=MS.gene016938.t1 |
| chr5.1 | CDS | 70437243 | 70437362 | 70437243 | ID=cds.MS.gene016938.t1;Parent=MS.gene016938.t1 |
| chr5.1 | exon | 70436886 | 70437125 | 70436886 | ID=MS.gene016938.t1.exon4;Parent=MS.gene016938.t1 |
| chr5.1 | CDS | 70436886 | 70437125 | 70436886 | ID=cds.MS.gene016938.t1;Parent=MS.gene016938.t1 |
| Gene Sequence |
| Protein sequence |
