AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene69473

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69473.t1 MTR_8g062780 95.441 329 15 0 1 329 1 329 0.0 649
MS.gene69473.t1 MTR_1g090760 53.474 331 149 2 3 328 4 334 3.45e-133 382
MS.gene69473.t1 MTR_0286s0010 53.571 308 140 2 18 324 29 334 8.66e-124 358
MS.gene69473.t1 MTR_6g008075 53.571 308 140 2 18 324 29 334 8.66e-124 358
MS.gene69473.t1 MTR_7g029030 44.762 315 168 3 10 324 12 320 3.94e-94 282
MS.gene69473.t1 MTR_5g016010 44.099 322 176 3 1 320 6 325 2.78e-91 275
MS.gene69473.t1 MTR_4g095450 43.949 314 167 4 13 323 16 323 2.35e-87 265
MS.gene69473.t1 MTR_1g009750 43.137 306 170 3 21 324 25 328 3.05e-85 260
MS.gene69473.t1 MTR_4g087965 41.956 317 175 4 12 320 27 342 3.44e-83 255
MS.gene69473.t1 MTR_4g127670 42.857 301 166 3 22 320 23 319 8.78e-82 251
MS.gene69473.t1 MTR_1g101830 40.752 319 181 5 8 324 10 322 1.39e-79 245
MS.gene69473.t1 MTR_1g009750 40.461 304 164 4 21 324 25 311 8.75e-75 233
MS.gene69473.t1 MTR_4g046713 38.486 317 190 4 10 324 13 326 2.44e-74 232
MS.gene69473.t1 MTR_7g107520 40.803 299 171 4 26 324 28 320 6.56e-74 231
MS.gene69473.t1 MTR_4g122640 41.694 307 174 4 19 324 34 336 6.08e-73 229
MS.gene69473.t1 MTR_1g077000 41.806 299 161 5 26 324 42 327 2.46e-72 227
MS.gene69473.t1 MTR_5g021060 40.789 304 177 3 23 325 30 331 3.36e-72 227
MS.gene69473.t1 MTR_5g022870 41.158 311 165 7 19 324 19 316 5.05e-72 226
MS.gene69473.t1 MTR_1g025980 41.118 304 166 7 21 321 22 315 4.54e-70 221
MS.gene69473.t1 MTR_8g075100 39.739 307 175 6 19 324 22 319 1.52e-69 219
MS.gene69473.t1 MTR_0155s0040 39.355 310 169 5 18 324 22 315 1.82e-69 219
MS.gene69473.t1 MTR_8g076820 38.994 318 190 4 8 324 16 330 5.20e-69 219
MS.gene69473.t1 MTR_2g008710 39.198 324 181 6 10 324 9 325 2.09e-68 217
MS.gene69473.t1 MTR_2g088770 36.478 318 195 6 10 325 14 326 5.22e-68 216
MS.gene69473.t1 MTR_2g029830 39.103 312 182 4 21 328 26 333 6.13e-68 216
MS.gene69473.t1 MTR_2g029815 38.199 322 190 5 7 324 14 330 6.69e-68 216
MS.gene69473.t1 MTR_2g029560 35.647 317 200 3 10 324 11 325 4.45e-67 214
MS.gene69473.t1 MTR_4g114210 40.373 322 176 6 10 324 8 320 1.37e-66 212
MS.gene69473.t1 MTR_2g029820 37.621 311 186 4 19 325 25 331 8.63e-66 211
MS.gene69473.t1 MTR_2g040000 40.129 309 176 5 22 325 28 332 2.00e-65 209
MS.gene69473.t1 MTR_4g125940 39.482 309 179 4 20 324 25 329 2.22e-65 209
MS.gene69473.t1 MTR_4g132490 36.452 310 192 3 16 324 22 327 3.16e-65 209
MS.gene69473.t1 MTR_2g029730 35.962 317 199 3 10 324 12 326 4.67e-65 209
MS.gene69473.t1 MTR_7g093370 37.383 321 196 4 7 324 53 371 5.47e-65 209
MS.gene69473.t1 MTR_2g029860 35.494 324 195 5 11 324 11 330 8.88e-65 208
MS.gene69473.t1 MTR_3g092990 38.889 306 186 1 20 325 23 327 9.18e-65 207
MS.gene69473.t1 MTR_2g029800 36.656 311 189 4 19 325 25 331 1.62e-64 207
MS.gene69473.t1 MTR_2g028980 37.152 323 194 6 6 324 13 330 7.70e-64 206
MS.gene69473.t1 MTR_7g072510 37.736 318 188 4 7 324 5 312 8.09e-64 204
MS.gene69473.t1 MTR_2g029850 36.774 310 188 4 19 324 25 330 9.08e-64 206
MS.gene69473.t1 MTR_3g094650 36.825 315 188 5 10 320 11 318 1.16e-63 204
MS.gene69473.t1 MTR_4g132110 38.689 305 176 5 23 324 32 328 1.19e-63 205
MS.gene69473.t1 MTR_2g084090 36.364 319 191 4 10 324 8 318 1.37e-63 204
MS.gene69473.t1 MTR_6g043460 36.545 301 180 4 26 325 39 329 1.53e-63 205
MS.gene69473.t1 MTR_7g072480 38.080 323 189 4 2 324 5 316 4.56e-63 203
MS.gene69473.t1 MTR_3g072190 37.582 306 182 3 19 324 22 318 4.57e-63 203
MS.gene69473.t1 MTR_1g038680 37.542 301 184 3 27 324 33 332 6.30e-63 203
MS.gene69473.t1 MTR_5g017850 37.025 316 196 3 10 324 13 326 6.89e-63 202
MS.gene69473.t1 MTR_5g014100 37.460 315 175 7 23 324 26 331 8.16e-63 202
MS.gene69473.t1 MTR_6g027440 36.137 321 197 4 4 324 2 314 9.89e-63 202
MS.gene69473.t1 MTR_2g029750 37.621 311 184 5 19 324 25 330 1.18e-62 203
MS.gene69473.t1 MTR_7g086820 37.179 312 187 4 16 327 13 315 1.43e-62 201
MS.gene69473.t1 MTR_4g030890 38.111 307 185 4 19 325 96 397 1.70e-62 204
MS.gene69473.t1 MTR_1g054205 37.107 318 195 4 10 324 11 326 1.84e-62 202
MS.gene69473.t1 MTR_2g084080 36.478 318 192 5 7 324 10 317 2.98e-62 201
MS.gene69473.t1 MTR_4g029170 37.538 325 191 6 3 324 6 321 6.24e-62 200
MS.gene69473.t1 MTR_4g133800 39.274 303 169 7 27 326 45 335 6.33e-62 201
MS.gene69473.t1 MTR_4g031140 36.452 310 186 4 18 324 23 324 1.06e-61 200
MS.gene69473.t1 MTR_2g084110 36.482 307 184 5 19 324 21 317 1.33e-61 199
MS.gene69473.t1 MTR_1g086320 38.614 303 178 4 27 324 34 333 1.85e-61 199
MS.gene69473.t1 MTR_7g086870 38.127 299 173 4 27 325 26 312 1.96e-61 198
MS.gene69473.t1 MTR_4g132110 38.065 310 176 6 23 324 32 333 3.45e-61 199
MS.gene69473.t1 MTR_4g029190 39.871 311 179 5 15 324 37 340 3.82e-61 199
MS.gene69473.t1 MTR_5g074970 37.654 324 184 6 10 324 12 326 3.88e-61 198
MS.gene69473.t1 MTR_2g029910 35.423 319 198 4 13 326 19 334 1.98e-60 197
MS.gene69473.t1 MTR_1g086490 38.188 309 178 4 27 324 34 340 2.74e-60 196
MS.gene69473.t1 MTR_1g066380 38.312 308 177 5 21 324 25 323 7.15e-60 195
MS.gene69473.t1 MTR_5g017860 34.810 316 203 3 10 324 13 326 1.04e-59 194
MS.gene69473.t1 MTR_5g083860 35.647 317 197 4 8 324 16 325 2.92e-59 193
MS.gene69473.t1 MTR_1g066710 38.511 309 177 5 20 324 24 323 2.95e-59 193
MS.gene69473.t1 MTR_4g083710 37.578 322 187 7 8 324 12 324 3.48e-59 193
MS.gene69473.t1 MTR_2g437770 36.877 301 176 7 26 324 53 341 4.23e-59 193
MS.gene69473.t1 MTR_4g125940 41.697 271 150 4 58 324 8 274 1.75e-58 190
MS.gene69473.t1 MTR_2g029740 35.806 310 191 4 19 324 25 330 2.13e-58 192
MS.gene69473.t1 MTR_3g466200 35.913 323 195 5 5 324 7 320 4.55e-58 190
MS.gene69473.t1 MTR_5g074760 39.264 326 178 9 8 324 7 321 6.06e-58 190
MS.gene69473.t1 MTR_1g066640 37.540 309 180 5 20 324 24 323 6.33e-58 190
MS.gene69473.t1 MTR_1g115900 36.697 327 191 6 5 324 4 321 6.95e-58 190
MS.gene69473.t1 MTR_3g092990 37.705 305 178 2 20 324 23 315 2.93e-57 188
MS.gene69473.t1 MTR_5g074740 39.024 328 180 9 8 326 7 323 4.13e-57 187
MS.gene69473.t1 MTR_3g467600 36.728 324 189 7 8 324 10 324 4.15e-57 187
MS.gene69473.t1 MTR_2g084010 35.331 317 194 6 10 324 11 318 4.86e-57 187
MS.gene69473.t1 MTR_5g033470 35.621 306 184 6 27 324 77 377 7.07e-57 189
MS.gene69473.t1 MTR_4g029180 36.545 301 180 5 26 324 30 321 8.01e-57 187
MS.gene69473.t1 MTR_6g043240 35.570 298 180 4 27 324 46 331 8.57e-57 187
MS.gene69473.t1 MTR_3g466180 38.170 317 187 3 8 324 16 323 1.07e-56 187
MS.gene69473.t1 MTR_5g049280 33.119 311 201 5 19 324 29 337 1.16e-56 187
MS.gene69473.t1 MTR_4g074995 36.164 318 184 4 8 324 9 308 2.16e-56 185
MS.gene69473.t1 MTR_6g043280 35.452 299 183 4 26 324 44 332 4.11e-56 185
MS.gene69473.t1 MTR_7g026990 37.124 299 176 5 27 324 35 322 4.95e-56 185
MS.gene69473.t1 MTR_2g084020 34.528 307 191 5 19 324 21 318 6.71e-56 184
MS.gene69473.t1 MTR_2g084000 33.019 318 203 4 8 324 11 319 6.89e-56 184
MS.gene69473.t1 MTR_5g074860 35.802 324 187 9 7 320 9 321 7.29e-56 184
MS.gene69473.t1 MTR_5g074710 37.888 322 182 9 11 326 14 323 7.52e-56 184
MS.gene69473.t1 MTR_4g029200 37.829 304 180 3 21 324 44 338 1.12e-55 184
MS.gene69473.t1 MTR_2g029830 40.152 264 150 4 69 328 6 265 1.25e-55 182
MS.gene69473.t1 MTR_3g094670 35.962 317 188 6 10 320 11 318 1.41e-55 184
MS.gene69473.t1 MTR_1g022970 37.705 305 184 5 23 324 46 347 5.69e-55 183
MS.gene69473.t1 MTR_2g008730 36.928 306 150 7 27 324 31 301 1.41e-54 181
MS.gene69473.t1 MTR_3g105790 36.093 302 183 5 26 324 28 322 2.27e-54 181
MS.gene69473.t1 MTR_2g077990 35.347 331 181 6 21 320 74 402 4.87e-54 182
MS.gene69473.t1 MTR_2g067440 34.650 329 183 5 21 320 58 383 6.07e-54 181
MS.gene69473.t1 MTR_2g078610 35.347 331 181 6 21 320 74 402 6.98e-54 182
MS.gene69473.t1 MTR_3g094630 36.808 307 183 5 20 324 25 322 8.02e-54 179
MS.gene69473.t1 MTR_1g066680 37.217 309 180 5 20 324 24 322 1.07e-53 179
MS.gene69473.t1 MTR_4g074990 34.557 327 189 6 1 324 1 305 8.61e-52 173
MS.gene69473.t1 MTR_3g072190 37.838 259 152 3 66 324 2 251 1.04e-51 171
MS.gene69473.t1 MTR_2g008160 35.463 313 186 8 19 324 20 323 4.52e-51 172
MS.gene69473.t1 MTR_2g078280 35.423 319 173 6 21 308 74 390 5.71e-51 174
MS.gene69473.t1 MTR_0147s0010 35.987 314 167 5 26 320 80 378 5.95e-51 173
MS.gene69473.t1 MTR_2g099175 33.542 319 192 8 14 324 29 335 1.49e-49 168
MS.gene69473.t1 MTR_1g066380 36.680 259 151 5 70 324 6 255 2.18e-44 152
MS.gene69473.t1 MTR_4g074980 33.224 304 171 5 21 324 23 294 3.18e-44 153
MS.gene69473.t1 MTR_2g067450 34.967 306 185 7 21 320 9 306 3.63e-44 154
MS.gene69473.t1 MTR_4g074980 36.864 236 144 4 21 256 23 253 4.80e-44 152
MS.gene69473.t1 MTR_3g105790 36.522 230 141 3 98 324 19 246 4.80e-40 141
MS.gene69473.t1 MTR_2g008160 31.629 313 163 8 19 324 20 288 2.79e-38 137
MS.gene69473.t1 MTR_5g074700 37.500 232 119 7 99 326 7 216 2.47e-35 128
MS.gene69473.t1 MTR_5g074860 29.808 312 164 7 14 320 21 282 2.35e-33 124
MS.gene69473.t1 MTR_2g008160 37.705 183 105 4 19 199 20 195 1.97e-32 120
MS.gene69473.t1 MTR_3g072210 35.751 193 114 4 134 324 54 238 2.28e-30 115
MS.gene69473.t1 MTR_2g029880 33.846 195 112 5 136 326 9 190 5.87e-28 108
MS.gene69473.t1 MTR_7g072490 32.766 235 95 5 69 303 2 173 3.86e-26 103
MS.gene69473.t1 MTR_5g058120 33.136 169 99 3 162 329 9 164 3.89e-22 94.0
MS.gene69473.t1 MTR_2g078560 28.311 219 127 3 132 320 98 316 6.93e-22 94.7
MS.gene69473.t1 MTR_3g072260 44.248 113 62 1 20 132 23 134 2.00e-21 89.0
MS.gene69473.t1 MTR_7g086790 34.969 163 85 3 70 232 17 158 5.87e-21 89.4
MS.gene69473.t1 MTR_3g107060 27.619 315 141 12 6 303 66 310 4.55e-19 86.7
MS.gene69473.t1 MTR_1g089005 40.000 130 69 3 13 135 4 131 1.34e-17 79.0
MS.gene69473.t1 MTR_6g048160 53.425 73 29 2 62 134 22 89 1.32e-15 71.6
MS.gene69473.t1 MTR_4g114220 48.148 81 31 2 51 131 31 100 9.12e-14 68.2
MS.gene69473.t1 MTR_1g098320 43.590 78 44 0 247 324 47 124 6.35e-13 65.9
MS.gene69473.t1 MTR_4g031040 31.852 135 64 3 134 263 25 136 2.22e-12 63.9
MS.gene69473.t1 MTR_4g012865 38.095 63 39 0 26 88 80 142 3.21e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene69473.t1 AT5G40150 60.000 305 117 2 20 324 29 328 1.08e-134 386
MS.gene69473.t1 AT5G47000 57.453 322 129 3 10 327 16 333 1.29e-134 386
MS.gene69473.t1 AT3G28200 57.705 305 123 1 20 324 18 316 1.16e-130 375
MS.gene69473.t1 AT4G17690 55.556 315 135 1 14 328 17 326 1.05e-129 373
MS.gene69473.t1 AT1G24110 55.660 318 137 3 10 325 8 323 1.67e-125 362
MS.gene69473.t1 AT5G14130 45.426 317 166 3 10 324 19 330 3.01e-92 278
MS.gene69473.t1 AT5G14130 45.426 317 166 3 10 324 60 371 1.05e-91 278
MS.gene69473.t1 AT4G37520 43.791 306 169 2 21 324 25 329 1.00e-90 274
MS.gene69473.t1 AT4G37530 43.548 310 170 3 18 324 22 329 5.53e-90 272
MS.gene69473.t1 AT4G37520 43.464 306 167 3 21 324 25 326 2.73e-88 268
MS.gene69473.t1 AT5G67400 43.218 317 176 3 11 324 14 329 1.65e-86 263
MS.gene69473.t1 AT3G49960 42.857 315 176 3 13 324 16 329 5.52e-84 257
MS.gene69473.t1 AT2G18980 42.484 306 169 3 21 324 23 323 1.85e-82 253
MS.gene69473.t1 AT4G30170 41.503 306 172 3 21 324 25 325 4.63e-80 247
MS.gene69473.t1 AT4G37530 44.106 263 142 3 18 277 22 282 9.58e-76 234
MS.gene69473.t1 AT2G34060 39.355 310 185 2 17 323 36 345 2.10e-74 233
MS.gene69473.t1 AT3G50990 39.815 324 187 6 7 325 22 342 8.68e-73 229
MS.gene69473.t1 AT4G33420 40.312 320 178 5 5 324 19 325 1.51e-72 228
MS.gene69473.t1 AT5G51890 39.557 316 184 4 4 317 5 315 1.79e-72 227
MS.gene69473.t1 AT4G36430 39.344 305 182 3 22 325 29 331 2.93e-72 227
MS.gene69473.t1 AT4G33420 40.312 320 178 5 5 324 66 372 7.96e-72 227
MS.gene69473.t1 AT5G66390 40.132 304 179 3 23 325 33 334 1.47e-71 225
MS.gene69473.t1 AT2G18150 38.762 307 185 3 20 325 33 337 1.92e-71 225
MS.gene69473.t1 AT4G31760 40.063 317 182 4 10 324 16 326 2.39e-71 224
MS.gene69473.t1 AT5G17820 38.065 310 180 4 15 324 16 313 3.89e-71 223
MS.gene69473.t1 AT2G24800 40.777 309 160 6 26 324 34 329 2.36e-70 222
MS.gene69473.t1 AT5G17820 37.778 315 184 4 10 324 64 366 2.88e-70 223
MS.gene69473.t1 AT2G18140 37.942 311 190 3 16 325 28 336 2.26e-69 220
MS.gene69473.t1 AT3G21770 39.032 310 183 5 13 320 19 324 1.33e-68 218
MS.gene69473.t1 AT1G05260 36.957 322 189 6 10 325 13 326 2.60e-68 217
MS.gene69473.t1 AT4G08770 38.782 312 185 4 18 325 19 328 4.87e-68 216
MS.gene69473.t1 AT5G42180 37.380 313 187 5 10 320 8 313 1.10e-67 215
MS.gene69473.t1 AT2G38380 38.264 311 183 5 19 324 27 333 1.79e-67 215
MS.gene69473.t1 AT4G33870 36.795 337 177 2 18 320 63 397 3.83e-67 216
MS.gene69473.t1 AT4G08780 38.141 312 187 4 18 325 19 328 3.89e-67 214
MS.gene69473.t1 AT1G71695 37.654 324 183 4 13 324 23 339 4.59e-67 214
MS.gene69473.t1 AT5G06730 36.422 313 195 3 14 324 24 334 1.51e-66 213
MS.gene69473.t1 AT5G06720 36.102 313 196 3 14 324 23 333 1.18e-65 210
MS.gene69473.t1 AT4G16270 40.268 298 173 4 28 324 55 348 1.67e-65 210
MS.gene69473.t1 AT4G11290 35.647 317 200 3 10 324 12 326 2.01e-65 209
MS.gene69473.t1 AT2G38390 37.299 311 186 5 19 324 27 333 2.12e-65 210
MS.gene69473.t1 AT3G03670 35.962 317 196 3 10 324 10 321 1.02e-64 207
MS.gene69473.t1 AT5G05340 37.540 309 182 5 18 324 25 324 1.18e-64 207
MS.gene69473.t1 AT5G15180 36.164 318 195 5 10 324 17 329 1.76e-64 207
MS.gene69473.t1 AT2G41480 39.938 323 177 7 10 324 15 328 5.60e-64 206
MS.gene69473.t1 AT1G05240 39.597 298 172 4 26 320 29 321 6.37e-64 205
MS.gene69473.t1 AT1G05250 39.597 298 172 4 26 320 29 321 6.37e-64 205
MS.gene69473.t1 AT3G32980 36.503 326 200 5 5 325 12 335 7.43e-64 206
MS.gene69473.t1 AT3G01190 37.304 319 187 7 10 324 12 321 8.02e-64 205
MS.gene69473.t1 AT2G35380 38.415 328 187 7 10 324 10 335 1.34e-63 205
MS.gene69473.t1 AT3G49120 35.890 326 202 5 5 325 13 336 1.45e-63 205
MS.gene69473.t1 AT1G14550 39.032 310 177 6 18 324 21 321 1.94e-63 204
MS.gene69473.t1 AT1G68850 37.942 311 179 8 23 324 30 335 3.03e-63 204
MS.gene69473.t1 AT1G44970 37.908 306 186 3 21 324 43 346 3.17e-62 202
MS.gene69473.t1 AT3G49110 37.179 312 188 6 19 325 29 337 3.54e-62 202
MS.gene69473.t1 AT5G19890 37.299 311 183 6 19 325 26 328 4.60e-62 201
MS.gene69473.t1 AT2G37130 39.241 316 178 6 14 324 21 327 7.49e-62 200
MS.gene69473.t1 AT5G64120 36.977 311 180 8 17 324 31 328 1.01e-61 200
MS.gene69473.t1 AT1G30870 37.539 317 180 8 14 325 43 346 1.10e-61 200
MS.gene69473.t1 AT4G21960 36.842 304 183 3 23 324 31 327 2.44e-61 199
MS.gene69473.t1 AT1G49570 37.417 302 186 2 21 320 46 346 6.47e-61 198
MS.gene69473.t1 AT3G17070 36.964 303 177 6 26 321 41 336 6.69e-61 198
MS.gene69473.t1 AT2G22420 36.156 307 191 4 18 324 18 319 6.78e-61 197
MS.gene69473.t1 AT2G37130 39.803 304 169 6 26 324 2 296 7.89e-61 196
MS.gene69473.t1 AT1G34510 36.364 319 186 7 8 325 8 310 8.09e-61 197
MS.gene69473.t1 AT5G64110 37.294 303 175 6 27 324 38 330 4.97e-60 196
MS.gene69473.t1 AT1G14540 34.494 316 198 4 10 324 8 315 1.03e-59 194
MS.gene69473.t1 AT4G26010 34.161 322 195 7 5 325 5 310 1.50e-59 194
MS.gene69473.t1 AT4G26010 34.161 322 195 7 5 325 33 338 2.08e-59 194
MS.gene69473.t1 AT5G19880 35.294 323 196 6 13 324 9 329 1.33e-57 189
MS.gene69473.t1 AT5G58400 35.669 314 190 6 10 320 17 321 3.97e-56 185
MS.gene69473.t1 AT5G58390 33.438 317 199 5 7 320 5 312 1.84e-54 181
MS.gene69473.t1 AT1G77100 37.061 313 177 9 19 324 20 319 2.39e-54 181
MS.gene69473.t1 AT2G39040 36.334 311 189 6 20 324 43 350 2.61e-54 181
MS.gene69473.t1 AT4G25980 35.110 319 188 7 15 324 18 326 1.11e-53 179
MS.gene69473.t1 AT5G39580 35.366 328 189 10 1 324 11 319 4.24e-53 177
MS.gene69473.t1 AT5G24070 34.084 311 188 6 22 324 34 335 1.04e-50 172
MS.gene69473.t1 AT5G64100 33.003 303 188 6 26 324 40 331 3.05e-49 167
MS.gene69473.t1 AT3G17070 35.842 279 164 7 50 321 3 273 4.16e-47 160
MS.gene69473.t1 AT2G43480 32.432 333 191 9 13 324 16 335 5.81e-47 162
MS.gene69473.t1 AT2G35380 39.271 247 142 6 84 324 3 247 1.41e-46 158
MS.gene69473.t1 AT5G22410 34.539 304 186 8 27 325 32 327 3.12e-45 157
MS.gene69473.t1 AT2G24800 43.902 164 87 2 26 189 34 192 2.40e-37 134
MS.gene69473.t1 AT5G39580 36.000 200 110 6 1 198 11 194 1.45e-28 110
MS.gene69473.t1 AT4G25980 36.413 184 104 5 16 195 64 238 2.21e-28 111
MS.gene69473.t1 AT4G32320 29.514 288 119 9 33 303 99 319 1.43e-19 88.2
MS.gene69473.t1 AT3G42570 36.559 93 58 1 100 191 57 149 4.99e-13 66.2
MS.gene69473.t1 AT4G08390 27.273 198 113 4 117 306 185 359 1.86e-12 67.8
MS.gene69473.t1 AT4G08390 27.273 198 113 4 117 306 186 360 1.90e-12 67.8
MS.gene69473.t1 AT4G08390 27.273 198 113 4 117 306 186 360 1.90e-12 67.8
MS.gene69473.t1 AT4G08390 27.273 198 113 4 117 306 186 360 1.90e-12 67.8

Find 69 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATGATGTCTTCAAATTT+AGG 0.179444 8.1:+41032216 None:intergenic
ATGAGTTTCGATTGTGTAAT+TGG 0.201616 8.1:+41032264 None:intergenic
GCATACTCTGGATTATATTT+AGG 0.231124 8.1:+41031385 None:intergenic
CGATTGTGTAATTGGAAATA+AGG 0.248579 8.1:+41032272 None:intergenic
CTCTGCCTTGTTGAAGGAAT+TGG 0.278354 8.1:+41032080 None:intergenic
AAATAAGGCTAGGCAGAATA+AGG 0.306649 8.1:+41032287 None:intergenic
GAAGAGAGGAATGGGACTTT+TGG 0.327984 8.1:-41031254 MS.gene69473:CDS
CGTGACCTTGTTGTCATTGT+TGG 0.359384 8.1:-41031931 MS.gene69473:CDS
CAAGAGATGGTGGCTCTAAC+AGG 0.366286 8.1:-41031487 MS.gene69473:CDS
TTCTTCAGCGATTGCATGGT+TGG 0.397734 8.1:-41032132 MS.gene69473:CDS
ACGAAAATCCTCAAAGAACT+TGG 0.405925 8.1:+41031162 None:intergenic
AAGAATTTGAAGAGAGGAAT+GGG 0.407936 8.1:-41031262 MS.gene69473:CDS
TTTGGCTACGGATAGTTTGA+TGG 0.413246 8.1:-41031236 MS.gene69473:CDS
AAATCAAACCAAGTTCTTTG+AGG 0.414406 8.1:-41031170 MS.gene69473:CDS
CTAACAGGTGCACACACAAT+AGG 0.419024 8.1:-41031472 MS.gene69473:CDS
CAAGAATTTGAAGAGAGGAA+TGG 0.430899 8.1:-41031263 MS.gene69473:CDS
TGAAGGAATTGGAGGATACT+AGG 0.436422 8.1:+41032091 None:intergenic
ACTGCAAACAGTTTAGTAAC+AGG 0.436437 8.1:-41031441 MS.gene69473:CDS
TTAAGCCCTGCAGCATACTC+TGG 0.440829 8.1:+41031373 None:intergenic
CATATTAAGGAGGGGAAGGA+TGG 0.448934 8.1:-41031112 MS.gene69473:CDS
CCTCTTCTTCAGCGATTGCA+TGG 0.449760 8.1:-41032136 MS.gene69473:CDS
AGTGCAGCGCCAGCAGTTGA+AGG 0.453823 8.1:+41032162 None:intergenic
AATAAGGCTAGGCAGAATAA+GGG 0.461742 8.1:+41032288 None:intergenic
GACATCAACCTCTCCCTCTC+AGG 0.462357 8.1:-41032048 MS.gene69473:CDS
ATCACGCTCTGCCTTGTTGA+AGG 0.475369 8.1:+41032074 None:intergenic
CAAGAGGACAAAACCATTTG+TGG 0.479493 8.1:-41031206 MS.gene69473:CDS
GCCAACCATGACCATGTCTC+AGG 0.480069 8.1:-41031827 MS.gene69473:intron
TGCCTTGTTGAAGGAATTGG+AGG 0.483730 8.1:+41032083 None:intergenic
TCAGCATACATATCCACAAA+TGG 0.490986 8.1:+41031193 None:intergenic
TATAATCCAGAGTATGCTGC+AGG 0.492335 8.1:-41031379 MS.gene69473:CDS
AAAACAACACCTTCAACTGC+TGG 0.501829 8.1:-41032171 MS.gene69473:CDS
TTCAGCGATTGCATGGTTGG+AGG 0.503281 8.1:-41032129 MS.gene69473:CDS
AACCATCTCCTGAGAGGGAG+AGG 0.503505 8.1:+41032040 None:intergenic
TTTGCATATTAAGGAGGGGA+AGG 0.504509 8.1:-41031116 MS.gene69473:CDS
CACGTCGTTGAACGCTGACA+TGG 0.507162 8.1:+41031318 None:intergenic
AGCAAAGAACATGTTGGAGC+TGG 0.508896 8.1:-41032001 MS.gene69473:CDS
CCAAGGTCTAACTCGTAAGA+TGG 0.511014 8.1:+41031904 None:intergenic
GACCTTGTTGTCATTGTTGG+TGG 0.518560 8.1:-41031928 MS.gene69473:CDS
AACCTCTCCCTCTCAGGAGA+TGG 0.518611 8.1:-41032042 MS.gene69473:CDS
ACCTGAGACATGGTCATGGT+TGG 0.519828 8.1:+41031826 None:intergenic
TCAGCACAAGAGACCACACC+GGG 0.536779 8.1:+41031973 None:intergenic
TTGGCTACGGATAGTTTGAT+GGG 0.544626 8.1:-41031235 MS.gene69473:CDS
CCATCTTACGAGTTAGACCT+TGG 0.545376 8.1:-41031904 MS.gene69473:CDS
CCATGCAATCGCTGAAGAAG+AGG 0.548520 8.1:+41032136 None:intergenic
AACAAGGTCACGTGCAGCTG+CGG 0.559854 8.1:+41031942 None:intergenic
TACGGATAGTTTGATGGGTG+AGG 0.562512 8.1:-41031230 MS.gene69473:CDS
GTTTGATGGGTGAGGACAAG+AGG 0.573583 8.1:-41031222 MS.gene69473:CDS
AGGGTTTACAGTTCAAGAGA+TGG 0.577701 8.1:-41031500 MS.gene69473:CDS
CTAAACTGTCTCTTCGACCA+AGG 0.580683 8.1:+41031887 None:intergenic
GTGTAATTGGAAATAAGGCT+AGG 0.590377 8.1:+41032277 None:intergenic
ATCAAAACCATCTCCTGAGA+GGG 0.598540 8.1:+41032035 None:intergenic
TCGTTGAACGCTGACATGGA+AGG 0.606868 8.1:+41031322 None:intergenic
CACACGAGCAAAGAACATGT+TGG 0.609530 8.1:-41032007 MS.gene69473:CDS
TGCAATCGCTGAAGAAGAGG+CGG 0.617338 8.1:+41032139 None:intergenic
TACATGTTATCAAACTTGCT+AGG 0.621324 8.1:+41031289 None:intergenic
ATATTTAGGATCAGTTTCAG+TGG 0.624806 8.1:+41031399 None:intergenic
GTTTACAGTTCAAGAGATGG+TGG 0.625008 8.1:-41031497 MS.gene69473:CDS
TGAGAGGGAGAGGTTGATGT+CGG 0.634718 8.1:+41032050 None:intergenic
TATTTCAAGAATTTGAAGAG+AGG 0.634886 8.1:-41031268 MS.gene69473:CDS
CATCAAAACCATCTCCTGAG+AGG 0.653088 8.1:+41032034 None:intergenic
ATAAGGCTAGGCAGAATAAG+GGG 0.660626 8.1:+41032289 None:intergenic
AGGATGGAGAGATACGACAT+AGG 0.662838 8.1:-41031096 MS.gene69473:CDS
ATCCTCCAATTCCTTCAACA+AGG 0.665150 8.1:-41032085 MS.gene69473:CDS
ATAATCCAGAGTATGCTGCA+GGG 0.674221 8.1:-41031378 MS.gene69473:CDS
GGAGCTGGAATGCCCCGGTG+TGG 0.680967 8.1:-41031986 MS.gene69473:CDS
GACCACCAACAATGACAACA+AGG 0.684955 8.1:+41031926 None:intergenic
ATGTTGGAGCTGGAATGCCC+CGG 0.689095 8.1:-41031991 MS.gene69473:CDS
GTCAGCACAAGAGACCACAC+CGG 0.698599 8.1:+41031972 None:intergenic
CAGCACAAGAGACCACACCG+GGG 0.844878 8.1:+41031974 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGTGAATTTTGTAATA+CGG - chr8.1:41031734-41031753 MS.gene69473:intron 15.0%
! TATTTCAAGAATTTGAAGAG+AGG - chr8.1:41032107-41032126 MS.gene69473:CDS 25.0%
!! ATAGACATTTTCACTTCAAA+AGG - chr8.1:41031855-41031874 MS.gene69473:CDS 25.0%
!! TAGACATTTTCACTTCAAAA+GGG - chr8.1:41031856-41031875 MS.gene69473:CDS 25.0%
!!! AAGGATCTTTTTGGTAATTT+TGG + chr8.1:41032037-41032056 None:intergenic 25.0%
!!! CAAATTTAGGACATGATTTT+TGG + chr8.1:41031149-41031168 None:intergenic 25.0%
!!! TTGATGATGTCTTCAAATTT+AGG + chr8.1:41031162-41031181 None:intergenic 25.0%
AAATCAAACCAAGTTCTTTG+AGG - chr8.1:41032205-41032224 MS.gene69473:CDS 30.0%
AAGAATTTGAAGAGAGGAAT+GGG - chr8.1:41032113-41032132 MS.gene69473:CDS 30.0%
ATGAGTTTCGATTGTGTAAT+TGG + chr8.1:41031114-41031133 None:intergenic 30.0%
CGATTGTGTAATTGGAAATA+AGG + chr8.1:41031106-41031125 None:intergenic 30.0%
GCATACTCTGGATTATATTT+AGG + chr8.1:41031993-41032012 None:intergenic 30.0%
TGTCAACAATTCAATGTAGA+AGG + chr8.1:41031803-41031822 None:intergenic 30.0%
! AGTGTTTTGCATATTAAGGA+GGG - chr8.1:41032254-41032273 MS.gene69473:CDS 30.0%
! ATATTTAGGATCAGTTTCAG+TGG + chr8.1:41031979-41031998 None:intergenic 30.0%
! ATGTAGAAGGATGAAGTATT+TGG + chr8.1:41031790-41031809 None:intergenic 30.0%
! GCTTAGTGTTTTGCATATTA+AGG - chr8.1:41032250-41032269 MS.gene69473:CDS 30.0%
! TACATGTTATCAAACTTGCT+AGG + chr8.1:41032089-41032108 None:intergenic 30.0%
! TAGTGTTTTGCATATTAAGG+AGG - chr8.1:41032253-41032272 MS.gene69473:CDS 30.0%
!!! CATGATTTTTGGTAGTAGTT+TGG + chr8.1:41031138-41031157 None:intergenic 30.0%
!!! TTGTTTTTTTACCTGAGACA+TGG + chr8.1:41031562-41031581 None:intergenic 30.0%
AAATAAGGCTAGGCAGAATA+AGG + chr8.1:41031091-41031110 None:intergenic 35.0%
AATAAGGCTAGGCAGAATAA+GGG + chr8.1:41031090-41031109 None:intergenic 35.0%
ACGAAAATCCTCAAAGAACT+TGG + chr8.1:41032216-41032235 None:intergenic 35.0%
ACTGCAAACAGTTTAGTAAC+AGG - chr8.1:41031934-41031953 MS.gene69473:CDS 35.0%
CAAGAATTTGAAGAGAGGAA+TGG - chr8.1:41032112-41032131 MS.gene69473:CDS 35.0%
GTGTAATTGGAAATAAGGCT+AGG + chr8.1:41031101-41031120 None:intergenic 35.0%
TCAGCATACATATCCACAAA+TGG + chr8.1:41032185-41032204 None:intergenic 35.0%
! GTGTTTTGCATATTAAGGAG+GGG - chr8.1:41032255-41032274 MS.gene69473:CDS 35.0%
AAAACAACACCTTCAACTGC+TGG - chr8.1:41031204-41031223 MS.gene69473:CDS 40.0%
AGGGTTTACAGTTCAAGAGA+TGG - chr8.1:41031875-41031894 MS.gene69473:CDS 40.0%
ATAAGGCTAGGCAGAATAAG+GGG + chr8.1:41031089-41031108 None:intergenic 40.0%
ATAATCCAGAGTATGCTGCA+GGG - chr8.1:41031997-41032016 MS.gene69473:CDS 40.0%
ATCAAAACCATCTCCTGAGA+GGG + chr8.1:41031343-41031362 None:intergenic 40.0%
ATCCTCCAATTCCTTCAACA+AGG - chr8.1:41031290-41031309 MS.gene69473:CDS 40.0%
CAAGAGGACAAAACCATTTG+TGG - chr8.1:41032169-41032188 MS.gene69473:CDS 40.0%
GTTTACAGTTCAAGAGATGG+TGG - chr8.1:41031878-41031897 MS.gene69473:CDS 40.0%
TATAATCCAGAGTATGCTGC+AGG - chr8.1:41031996-41032015 MS.gene69473:CDS 40.0%
TGAAGGAATTGGAGGATACT+AGG + chr8.1:41031287-41031306 None:intergenic 40.0%
TTGGCTACGGATAGTTTGAT+GGG - chr8.1:41032140-41032159 MS.gene69473:CDS 40.0%
TTTATGTGACCATGCATGCT+AGG - chr8.1:41031830-41031849 MS.gene69473:CDS 40.0%
TTTGCATATTAAGGAGGGGA+AGG - chr8.1:41032259-41032278 MS.gene69473:CDS 40.0%
TTTGGCTACGGATAGTTTGA+TGG - chr8.1:41032139-41032158 MS.gene69473:CDS 40.0%
! CTGACATGGAAGGATCTTTT+TGG + chr8.1:41032046-41032065 None:intergenic 40.0%
! TGTTTTCTGCTTGTCTGTGA+CGG + chr8.1:41031190-41031209 None:intergenic 40.0%
! TTTTACCTGAGACATGGTCA+TGG + chr8.1:41031556-41031575 None:intergenic 40.0%
!!! GTTTTCTGCGTCGATTGATT+TGG + chr8.1:41031517-41031536 None:intergenic 40.0%
AGCAAAGAACATGTTGGAGC+TGG - chr8.1:41031374-41031393 MS.gene69473:CDS 45.0%
AGGATGGAGAGATACGACAT+AGG - chr8.1:41032279-41032298 MS.gene69473:CDS 45.0%
CACACGAGCAAAGAACATGT+TGG - chr8.1:41031368-41031387 MS.gene69473:CDS 45.0%
CATATTAAGGAGGGGAAGGA+TGG - chr8.1:41032263-41032282 MS.gene69473:CDS 45.0%
CATCAAAACCATCTCCTGAG+AGG + chr8.1:41031344-41031363 None:intergenic 45.0%
CCAAGGTCTAACTCGTAAGA+TGG + chr8.1:41031474-41031493 None:intergenic 45.0%
CCATCTTACGAGTTAGACCT+TGG - chr8.1:41031471-41031490 MS.gene69473:CDS 45.0%
CTAAACTGTCTCTTCGACCA+AGG + chr8.1:41031491-41031510 None:intergenic 45.0%
CTAACAGGTGCACACACAAT+AGG - chr8.1:41031903-41031922 MS.gene69473:CDS 45.0%
GACCACCAACAATGACAACA+AGG + chr8.1:41031452-41031471 None:intergenic 45.0%
TGTCTATCACCTAGCATGCA+TGG + chr8.1:41031842-41031861 None:intergenic 45.0%
TTCTTCAGCGATTGCATGGT+TGG - chr8.1:41031243-41031262 MS.gene69473:CDS 45.0%
! CGTGACCTTGTTGTCATTGT+TGG - chr8.1:41031444-41031463 MS.gene69473:CDS 45.0%
! CTCTGCCTTGTTGAAGGAAT+TGG + chr8.1:41031298-41031317 None:intergenic 45.0%
! GAAGAGAGGAATGGGACTTT+TGG - chr8.1:41032121-41032140 MS.gene69473:CDS 45.0%
! GACCTTGTTGTCATTGTTGG+TGG - chr8.1:41031447-41031466 MS.gene69473:CDS 45.0%
! TACGGATAGTTTGATGGGTG+AGG - chr8.1:41032145-41032164 MS.gene69473:CDS 45.0%
! TGCCTTGTTGAAGGAATTGG+AGG + chr8.1:41031295-41031314 None:intergenic 45.0%
!! AGGAATGGGACTTTTGGCTA+CGG - chr8.1:41032127-41032146 MS.gene69473:CDS 45.0%
ACCTGAGACATGGTCATGGT+TGG + chr8.1:41031552-41031571 None:intergenic 50.0%
CCATGCAATCGCTGAAGAAG+AGG + chr8.1:41031242-41031261 None:intergenic 50.0%
CCTCTTCTTCAGCGATTGCA+TGG - chr8.1:41031239-41031258 MS.gene69473:CDS 50.0%
TCGTTGAACGCTGACATGGA+AGG + chr8.1:41032056-41032075 None:intergenic 50.0%
TGCAATCGCTGAAGAAGAGG+CGG + chr8.1:41031239-41031258 None:intergenic 50.0%
TTAAGCCCTGCAGCATACTC+TGG + chr8.1:41032005-41032024 None:intergenic 50.0%
TTCAGCGATTGCATGGTTGG+AGG - chr8.1:41031246-41031265 MS.gene69473:CDS 50.0%
! ATCACGCTCTGCCTTGTTGA+AGG + chr8.1:41031304-41031323 None:intergenic 50.0%
! GTTTGATGGGTGAGGACAAG+AGG - chr8.1:41032153-41032172 MS.gene69473:CDS 50.0%
!! CAAGAGATGGTGGCTCTAAC+AGG - chr8.1:41031888-41031907 MS.gene69473:CDS 50.0%
!! TGAGAGGGAGAGGTTGATGT+CGG + chr8.1:41031328-41031347 None:intergenic 50.0%
AACAAGGTCACGTGCAGCTG+CGG + chr8.1:41031436-41031455 None:intergenic 55.0%
AACCATCTCCTGAGAGGGAG+AGG + chr8.1:41031338-41031357 None:intergenic 55.0%
AACCTCTCCCTCTCAGGAGA+TGG - chr8.1:41031333-41031352 MS.gene69473:CDS 55.0%
ATGTTGGAGCTGGAATGCCC+CGG - chr8.1:41031384-41031403 MS.gene69473:CDS 55.0%
CACGTCGTTGAACGCTGACA+TGG + chr8.1:41032060-41032079 None:intergenic 55.0%
GACATCAACCTCTCCCTCTC+AGG - chr8.1:41031327-41031346 MS.gene69473:CDS 55.0%
GCCAACCATGACCATGTCTC+AGG - chr8.1:41031548-41031567 MS.gene69473:intron 55.0%
GTCAGCACAAGAGACCACAC+CGG + chr8.1:41031406-41031425 None:intergenic 55.0%
TCAGCACAAGAGACCACACC+GGG + chr8.1:41031405-41031424 None:intergenic 55.0%
AGTGCAGCGCCAGCAGTTGA+AGG + chr8.1:41031216-41031235 None:intergenic 60.0%
CAGCACAAGAGACCACACCG+GGG + chr8.1:41031404-41031423 None:intergenic 60.0%
GGAGCTGGAATGCCCCGGTG+TGG - chr8.1:41031389-41031408 MS.gene69473:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 41031063 41032334 41031063 ID=MS.gene69473
chr8.1 mRNA 41031063 41032334 41031063 ID=MS.gene69473.t1;Parent=MS.gene69473
chr8.1 exon 41031828 41032334 41031828 ID=MS.gene69473.t1.exon1;Parent=MS.gene69473.t1
chr8.1 CDS 41031828 41032334 41031828 ID=cds.MS.gene69473.t1;Parent=MS.gene69473.t1
chr8.1 exon 41031063 41031545 41031063 ID=MS.gene69473.t1.exon2;Parent=MS.gene69473.t1
chr8.1 CDS 41031063 41031545 41031063 ID=cds.MS.gene69473.t1;Parent=MS.gene69473.t1
Gene Sequence

>MS.gene69473

ATGATTTATAAATCTTGCATTTTCCCCTTATTCTGCCTAGCCTTATTTCCAATTACACAATCGAAACTCATTCCAAACTACTACCAAAAATCATGTCCTAAATTTGAAGACATCATCAAGCAAACCGTCACAGACAAGCAGAAAACAACACCTTCAACTGCTGGCGCTGCACTCCGCCTCTTCTTCAGCGATTGCATGGTTGGAGGTTGTGATGCATCTGTCCTAGTATCCTCCAATTCCTTCAACAAGGCAGAGCGTGATGCCGACATCAACCTCTCCCTCTCAGGAGATGGTTTTGATGTCGTCACACGAGCAAAGAACATGTTGGAGCTGGAATGCCCCGGTGTGGTCTCTTGTGCTGACATACTTGCCGCAGCTGCACGTGACCTTGTTGTCATTGTTGGTGGTCCATCTTACGAGTTAGACCTTGGTCGAAGAGACAGTTTAGAGTCCAAATCAATCGACGCAGAAAACAAATATCTGTTGCCAACCATGACCATGTCTCAGGTAAAAAAACAAATCTATTACATTGTTCAATAAATTTTTTACTTAACACTGAAATTACAAAATTCATCGTTGAATTGAAAATCATTCAGTATGTGAGTACAATACATCAAAATTAACGTCATATAATAATATGATCATGAAATATATGATACAAATTTTTAATCAAATTGTGAATTTTGTAATACGGTAAAAAAGTTATTCAACATTGTAACATTAACCAAATACTTCATCCTTCTACATTGAATTGTTGACATAAATATTTTATGTGACCATGCATGCTAGGTGATAGACATTTTCACTTCAAAAGGGTTTACAGTTCAAGAGATGGTGGCTCTAACAGGTGCACACACAATAGGATTCTCTCACTGCAAACAGTTTAGTAACAGGCTCTTCAACTTCAGCAAGACCACTGAAACTGATCCTAAATATAATCCAGAGTATGCTGCAGGGCTTAAAAAACTCTGCCAAAATTACCAAAAAGATCCTTCCATGTCAGCGTTCAACGACGTGATGACACCTAGCAAGTTTGATAACATGTATTTCAAGAATTTGAAGAGAGGAATGGGACTTTTGGCTACGGATAGTTTGATGGGTGAGGACAAGAGGACAAAACCATTTGTGGATATGTATGCTGAAAATCAAACCAAGTTCTTTGAGGATTTTCGTAATGCTATGCGTAAGCTTAGTGTTTTGCATATTAAGGAGGGGAAGGATGGAGAGATACGACATAGGTGTGATACTTTCAACAATCTTAATGCTAATTGA
Protein sequence

>MS.gene69473.t1

MIYKSCIFPLFCLALFPITQSKLIPNYYQKSCPKFEDIIKQTVTDKQKTTPSTAGAALRLFFSDCMVGGCDASVLVSSNSFNKAERDADINLSLSGDGFDVVTRAKNMLELECPGVVSCADILAAAARDLVVIVGGPSYELDLGRRDSLESKSIDAENKYLLPTMTMSQVIDIFTSKGFTVQEMVALTGAHTIGFSHCKQFSNRLFNFSKTTETDPKYNPEYAAGLKKLCQNYQKDPSMSAFNDVMTPSKFDNMYFKNLKRGMGLLATDSLMGEDKRTKPFVDMYAENQTKFFEDFRNAMRKLSVLHIKEGKDGEIRHRCDTFNNLNAN