AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37585

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37585.t1 MTR_5g088720 99.077 325 3 0 1 325 47 371 0.0 674
MS.gene37585.t1 MTR_5g088720 99.077 325 3 0 1 325 1 325 0.0 669
MS.gene37585.t1 MTR_5g088720 99.077 325 3 0 1 325 6 330 0.0 669
MS.gene37585.t1 MTR_0067s0100 61.409 298 95 6 1 297 2 280 1.73e-120 348
MS.gene37585.t1 MTR_1g051105 40.841 333 107 11 2 324 4 256 8.51e-71 221
MS.gene37585.t1 MTR_3g072630 34.630 257 140 5 7 245 20 266 1.15e-41 147
MS.gene37585.t1 MTR_3g072630 34.630 257 140 5 7 245 20 266 1.64e-41 147
MS.gene37585.t1 MTR_3g068005 35.769 260 133 7 1 245 1 241 1.40e-38 141
MS.gene37585.t1 MTR_6g079660 51.969 127 52 4 123 245 159 280 3.52e-37 137
MS.gene37585.t1 MTR_4g064570 35.341 249 119 9 6 245 11 226 8.40e-37 135
MS.gene37585.t1 MTR_5g080350 32.852 277 146 9 5 263 2 256 2.94e-36 134
MS.gene37585.t1 MTR_2g097620 52.000 100 43 1 151 245 135 234 2.59e-32 123
MS.gene37585.t1 MTR_3g083480 43.312 157 64 6 147 288 187 333 2.96e-32 123
MS.gene37585.t1 MTR_1g114320 31.387 274 141 10 8 264 14 257 4.66e-32 122
MS.gene37585.t1 MTR_7g074170 41.228 114 64 2 144 254 286 399 1.12e-25 107
MS.gene37585.t1 MTR_2g007340 51.685 89 42 1 157 244 157 245 2.12e-23 98.6
MS.gene37585.t1 MTR_1g114620 41.463 123 58 3 126 245 198 309 3.00e-23 98.6
MS.gene37585.t1 MTR_6g032960 36.986 146 79 5 147 288 184 320 5.00e-21 92.0
MS.gene37585.t1 MTR_5g041310 43.956 91 48 1 155 245 73 160 2.49e-19 85.5
MS.gene37585.t1 MTR_5g041330 45.055 91 47 1 155 245 63 150 3.34e-19 85.1
MS.gene37585.t1 MTR_4g110100 35.238 105 65 2 144 245 301 405 3.17e-17 82.4
MS.gene37585.t1 MTR_1g014710 36.957 92 53 2 158 244 186 277 1.66e-16 79.3
MS.gene37585.t1 MTR_3g088080 39.437 71 41 1 175 245 15 83 8.80e-16 72.0
MS.gene37585.t1 MTR_5g058530 49.153 59 29 1 187 244 210 268 6.29e-15 74.7
MS.gene37585.t1 MTR_6g016350 36.000 100 61 2 161 257 269 368 4.67e-14 72.8
MS.gene37585.t1 MTR_2g061790 54.762 42 19 0 200 241 109 150 5.06e-12 65.1
MS.gene37585.t1 MTR_4g106960 36.667 90 52 2 175 260 150 238 1.59e-11 64.7
MS.gene37585.t1 MTR_4g106960 36.667 90 52 2 175 260 150 238 1.87e-11 64.3
MS.gene37585.t1 MTR_4g106960 36.667 90 52 2 175 260 207 295 2.05e-11 64.7
MS.gene37585.t1 MTR_4g106960 36.667 90 52 2 175 260 207 295 2.42e-11 64.3
MS.gene37585.t1 MTR_5g022920 36.250 80 47 2 169 244 155 234 3.19e-11 62.8
MS.gene37585.t1 MTR_4g108830 36.508 63 39 1 180 241 126 188 6.92e-11 61.2
MS.gene37585.t1 MTR_4g108830 36.508 63 39 1 180 241 154 216 9.11e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37585.t1 AT2G40830 46.686 347 139 10 2 324 3 327 4.76e-81 249
MS.gene37585.t1 AT2G40830 46.686 347 139 10 2 324 3 327 4.76e-81 249
MS.gene37585.t1 AT2G40830 46.686 347 139 10 2 324 3 327 4.76e-81 249
MS.gene37585.t1 AT2G40830 46.686 347 139 10 2 324 3 327 4.76e-81 249
MS.gene37585.t1 AT3G56580 48.387 310 100 12 6 297 7 274 1.64e-69 219
MS.gene37585.t1 AT3G56580 48.387 310 100 12 6 297 7 274 1.64e-69 219
MS.gene37585.t1 AT3G56580 48.387 310 100 12 6 297 7 274 1.64e-69 219
MS.gene37585.t1 AT3G19950 35.039 254 135 8 8 245 22 261 2.88e-43 152
MS.gene37585.t1 AT3G19950 34.646 254 136 8 8 245 80 319 6.41e-43 152
MS.gene37585.t1 AT3G19950 34.646 254 136 8 8 245 80 319 6.41e-43 152
MS.gene37585.t1 AT1G60360 34.202 307 156 15 7 290 24 307 1.77e-40 144
MS.gene37585.t1 AT3G10815 50.000 142 42 4 158 296 78 193 2.94e-39 137
MS.gene37585.t1 AT1G55530 28.521 284 168 6 7 262 9 285 2.50e-35 131
MS.gene37585.t1 AT1G55530 28.521 284 168 6 7 262 9 285 2.50e-35 131
MS.gene37585.t1 AT5G56340 40.909 176 77 6 133 288 195 363 2.49e-34 129
MS.gene37585.t1 AT1G55530 29.231 260 164 7 7 262 9 252 2.10e-33 125
MS.gene37585.t1 AT5G59550 45.378 119 58 1 151 262 143 261 6.29e-30 118
MS.gene37585.t1 AT4G26400 40.972 144 75 3 149 287 193 331 7.38e-30 117
MS.gene37585.t1 AT4G26400 40.972 144 75 3 149 287 193 331 7.38e-30 117
MS.gene37585.t1 AT2G39720 34.074 270 133 11 1 247 1 248 1.24e-29 117
MS.gene37585.t1 AT2G39720 34.074 270 133 11 1 247 1 248 1.24e-29 117
MS.gene37585.t1 AT3G46620 50.000 102 44 1 151 245 159 260 1.41e-29 117
MS.gene37585.t1 AT5G59550 43.651 126 64 1 144 262 241 366 1.63e-29 118
MS.gene37585.t1 AT3G13430 47.059 102 47 2 147 245 173 270 7.89e-28 110
MS.gene37585.t1 AT3G13430 47.059 102 47 2 147 245 173 270 7.89e-28 110
MS.gene37585.t1 AT3G13430 47.059 102 47 2 147 245 173 270 7.89e-28 110
MS.gene37585.t1 AT3G13430 47.059 102 47 2 147 245 173 270 7.89e-28 110
MS.gene37585.t1 AT5G01980 43.363 113 62 1 144 254 292 404 2.82e-26 108
MS.gene37585.t1 AT1G68180 39.041 146 80 3 144 289 82 218 2.31e-25 102
MS.gene37585.t1 AT3G60080 50.602 83 33 1 181 255 142 224 4.14e-20 89.4
MS.gene37585.t1 AT5G20910 35.772 123 66 4 138 249 159 279 4.35e-19 86.7
MS.gene37585.t1 AT3G02340 41.837 98 55 2 171 267 305 401 5.66e-19 87.4
MS.gene37585.t1 AT3G02340 41.837 98 55 2 171 267 305 401 5.66e-19 87.4
MS.gene37585.t1 AT2G44330 38.655 119 63 3 133 245 27 141 2.45e-18 81.6
MS.gene37585.t1 AT5G15820 44.737 76 41 1 171 245 261 336 2.96e-18 84.7
MS.gene37585.t1 AT1G26800 40.860 93 51 1 156 248 73 161 4.13e-18 81.6
MS.gene37585.t1 AT5G60820 35.294 136 83 2 114 245 283 417 1.96e-17 82.8
MS.gene37585.t1 AT5G08139 36.752 117 66 5 147 258 255 368 6.86e-17 80.9
MS.gene37585.t1 AT5G64920 40.000 105 56 2 147 244 197 301 4.93e-16 78.2
MS.gene37585.t1 AT1G14200 36.842 76 48 0 170 245 79 154 2.79e-15 73.2
MS.gene37585.t1 AT3G58720 45.070 71 38 1 197 266 141 211 7.91e-12 64.7
MS.gene37585.t1 AT3G58720 45.070 71 38 1 197 266 161 231 9.14e-12 64.7
MS.gene37585.t1 AT3G58720 45.070 71 38 1 197 266 169 239 1.29e-11 64.3
MS.gene37585.t1 AT5G02750 46.154 52 28 0 200 251 214 265 2.16e-11 63.9
MS.gene37585.t1 AT4G10150 30.928 97 65 2 182 276 93 189 2.43e-11 63.2
MS.gene37585.t1 AT3G58720 45.070 71 38 1 197 266 169 239 3.32e-11 63.9
MS.gene37585.t1 AT3G63530 32.609 92 53 3 159 244 153 241 9.65e-11 61.6
MS.gene37585.t1 AT3G63530 32.609 92 53 3 159 244 153 241 9.65e-11 61.6

Find 95 sgRNAs with CRISPR-Local

Find 109 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACAATAGGTTTGGGCTTA+TGG 0.144953 5.3:+71592804 MS.gene37585:CDS
TATAACGTGTTCCATTATTC+TGG 0.271470 5.3:-71593515 None:intergenic
TCCCAGTTCCTGAACAGGGC+TGG 0.287756 5.3:+71592905 MS.gene37585:CDS
GGCTGGGGCGTTTATAGTTC+TGG 0.293414 5.3:+71592922 MS.gene37585:CDS
CTCCCTCTAACATCAAAGTT+TGG 0.296005 5.3:-71592871 None:intergenic
GTATTTCATGGTCAAGTTCC+TGG 0.296498 5.3:+71592955 MS.gene37585:CDS
CCCAGTTCCTGAACAGGGCT+GGG 0.305104 5.3:+71592906 MS.gene37585:CDS
TTCTGTCCCAGTTCCTGAAC+AGG 0.322724 5.3:+71592900 MS.gene37585:CDS
ACCAATGCTGACCAGAATAA+TGG 0.327570 5.3:+71593504 MS.gene37585:CDS
AATAATGGAACACGTTATAA+TGG 0.335853 5.3:+71593519 MS.gene37585:CDS
TTGATGCAATGCCTACTATT+AGG 0.339004 5.3:+71593124 MS.gene37585:CDS
CCCCAGCCCTGTTCAGGAAC+TGG 0.343591 5.3:-71592907 None:intergenic
TACATTCAGAATGGTAAATA+TGG 0.350279 5.3:-71593239 None:intergenic
GGTCCTAGGCGTGGCGATTT+CGG 0.351499 5.3:+71593009 MS.gene37585:CDS
TAAACGCCCCAGCCCTGTTC+AGG 0.367352 5.3:-71592913 None:intergenic
AGAGGTTCTGACAATAGGTT+TGG 0.376287 5.3:+71592796 MS.gene37585:CDS
CACCCAAACTTTGATGTTAG+AGG 0.383978 5.3:+71592868 MS.gene37585:CDS
TCTCTCCCTTCAAGCACAAT+TGG 0.421897 5.3:-71592625 None:intergenic
TCCCTCTAACATCAAAGTTT+GGG 0.425458 5.3:-71592870 None:intergenic
TCCATTATTCTGGTCAGCAT+TGG 0.433872 5.3:-71593505 None:intergenic
GAAATGGTAGCTCAAGGGGC+AGG 0.434859 5.3:+71593367 MS.gene37585:CDS
CCACCTCTCGGGCTTCCATT+AGG 0.440593 5.3:-71592988 None:intergenic
CCTGGACTAACCTTGCCTAA+TGG 0.441564 5.3:+71592973 MS.gene37585:CDS
TCAATTGAAGATCGTGCAGC+TGG 0.442427 5.3:-71593105 None:intergenic
CGAAGCAACAGTGGTGGAAA+TGG 0.442575 5.3:+71593351 MS.gene37585:CDS
GGATTTCTCCTTCCATTGTT+CGG 0.449206 5.3:-71593402 None:intergenic
TGGACCACGCCGATCATTCA+TGG 0.449429 5.3:-71593079 None:intergenic
CCCAGCCCTGTTCAGGAACT+GGG 0.453761 5.3:-71592906 None:intergenic
ATTCTGAATGTATTGTTCCT+TGG 0.454347 5.3:+71593250 MS.gene37585:CDS
GGCACAGAGGTTCTGACAAT+AGG 0.463327 5.3:+71592791 MS.gene37585:CDS
CACGCCTAGGACCACCTCTC+GGG 0.474492 5.3:-71592999 None:intergenic
TTCATGAGGCATAGAATGGC+TGG 0.476150 5.3:+71592841 MS.gene37585:CDS
GGTAGCTCAACACGGCAAAC+AGG 0.476761 5.3:-71593294 None:intergenic
TGAATGTATTGTTCCTTGGT+TGG 0.476923 5.3:+71593254 MS.gene37585:CDS
GAGGTTCTGACAATAGGTTT+GGG 0.480899 5.3:+71592797 MS.gene37585:CDS
CCACGCCTAGGACCACCTCT+CGG 0.482101 5.3:-71593000 None:intergenic
AATAATCAATATTCTGAGAC+TGG 0.484064 5.3:+71593465 MS.gene37585:CDS
TTCTCCTTCCATTGTTCGGA+CGG 0.492985 5.3:-71593398 None:intergenic
GAAGCCCGAGAGGTGGTCCT+AGG 0.494733 5.3:+71592995 MS.gene37585:CDS
ATGGTCACATGGCATCTCTC+TGG 0.495307 5.3:-71593220 None:intergenic
TGTATAGCATCAAATAAGTC+AGG 0.495328 5.3:-71592757 None:intergenic
TAATTTCATGAGGCATAGAA+TGG 0.500689 5.3:+71592837 MS.gene37585:CDS
ACAAATCCCTCATCACAGTA+AGG 0.515163 5.3:-71592658 None:intergenic
CCATTAGGCAAGGTTAGTCC+AGG 0.516692 5.3:-71592973 None:intergenic
CCAGTTCCTGAACAGGGCTG+GGG 0.517490 5.3:+71592907 MS.gene37585:CDS
CAATTGAAGATCGTGCAGCT+GGG 0.527634 5.3:-71593104 None:intergenic
CTCTCCCGAGCGTGATGGAA+AGG 0.532737 5.3:-71592722 None:intergenic
AAATACCTTTCCATCACGCT+CGG 0.536583 5.3:+71592717 MS.gene37585:CDS
GTTTGCCCTTACTGTGATGA+GGG 0.546875 5.3:+71592652 MS.gene37585:CDS
GCCTGTGTGATCCTAATAGT+AGG 0.552792 5.3:-71593135 None:intergenic
GTGGTGGAAATGGTAGCTCA+AGG 0.554250 5.3:+71593361 MS.gene37585:CDS
AACGGCCACAGAAACGAAAA+CGG 0.554921 5.3:-71593423 None:intergenic
AGTCGGCCAATTGTGCTTGA+AGG 0.556833 5.3:+71592619 MS.gene37585:CDS
GTTGAAGAAATAATGTCAAG+TGG 0.558708 5.3:+71592571 None:intergenic
AACAACTGACCATGAATGAT+CGG 0.561179 5.3:+71593070 MS.gene37585:CDS
ATGGAACACGTTATAATGGA+TGG 0.563370 5.3:+71593523 MS.gene37585:CDS
ACCCAAACTTTGATGTTAGA+GGG 0.565011 5.3:+71592869 MS.gene37585:CDS
GTCGGCCAATTGTGCTTGAA+GGG 0.565165 5.3:+71592620 MS.gene37585:CDS
AAATGGTAGCTCAAGGGGCA+GGG 0.567954 5.3:+71593368 MS.gene37585:CDS
TGGTGGAAATGGTAGCTCAA+GGG 0.569039 5.3:+71593362 MS.gene37585:CDS
GAGAGTGACCGTCCGAACAA+TGG 0.571454 5.3:+71593390 MS.gene37585:CDS
AAGGAACAATACATTCAGAA+TGG 0.573178 5.3:-71593248 None:intergenic
AATTGAAGATCGTGCAGCTG+GGG 0.576072 5.3:-71593103 None:intergenic
AATACCTTTCCATCACGCTC+GGG 0.577219 5.3:+71592718 MS.gene37585:CDS
TCACCGAAATCGCCACGCCT+AGG 0.578724 5.3:-71593012 None:intergenic
GGTGGAAATGGTAGCTCAAG+GGG 0.581164 5.3:+71593363 MS.gene37585:CDS
CGTTTGCCCTTACTGTGATG+AGG 0.582429 5.3:+71592651 MS.gene37585:CDS
TTAAACTCTCCCGAGCGTGA+TGG 0.588811 5.3:-71592727 None:intergenic
TATTGTTTGAACTAGAAGAA+CGG 0.600491 5.3:-71593446 None:intergenic
TCTCGGGCTTCCATTAGGCA+AGG 0.606325 5.3:-71592983 None:intergenic
CCGAGAGGTGGTCCTAGGCG+TGG 0.606422 5.3:+71593000 MS.gene37585:CDS
ATTGAAGATCGTGCAGCTGG+GGG 0.607854 5.3:-71593102 None:intergenic
TCTGTCCCAGTTCCTGAACA+GGG 0.612021 5.3:+71592901 MS.gene37585:CDS
CAAATCCCTCATCACAGTAA+GGG 0.613393 5.3:-71592657 None:intergenic
CGAGAACTCATCTGTCCTTG+TGG 0.617859 5.3:-71593318 None:intergenic
GTGACCGTCCGAACAATGGA+AGG 0.619630 5.3:+71593394 MS.gene37585:CDS
GAATGGTAAATATGGTCACA+TGG 0.629134 5.3:-71593231 None:intergenic
AGTAGTCGAAGCAACAGTGG+TGG 0.638220 5.3:+71593345 MS.gene37585:CDS
TGTCAAGTGGAGCAACACAT+TGG 0.641943 5.3:+71592584 MS.gene37585:CDS
CCTAATGGAAGCCCGAGAGG+TGG 0.642945 5.3:+71592988 MS.gene37585:CDS
ATTGGTGTTATGAATGCAGT+CGG 0.644987 5.3:+71592602 MS.gene37585:CDS
CTTGTGGTGGTAGCTCAACA+CGG 0.645208 5.3:-71593302 None:intergenic
CGTGTTGAGCTACCACCACA+AGG 0.646648 5.3:+71593303 MS.gene37585:CDS
AATCAATATTCTGAGACTGG+AGG 0.668736 5.3:+71593468 MS.gene37585:CDS
TTGCCTAATGGAAGCCCGAG+AGG 0.670811 5.3:+71592985 MS.gene37585:CDS
GAACTCATCTGTCCTTGTGG+TGG 0.671137 5.3:-71593315 None:intergenic
CAAGGACAGATGAGTTCTCG+TGG 0.679090 5.3:+71593321 MS.gene37585:CDS
GAGTTATGTTGAACCAACCA+AGG 0.692810 5.3:-71593267 None:intergenic
CAAGAAATTAACGAGATGCG+AGG 0.695840 5.3:+71592682 MS.gene37585:CDS
CAAACTTTGATGTTAGAGGG+AGG 0.698975 5.3:+71592872 MS.gene37585:CDS
ATGCTGTTGATAATTTCATG+AGG 0.699793 5.3:+71592827 MS.gene37585:CDS
GCCTACTATTAGGATCACAC+AGG 0.708442 5.3:+71593134 MS.gene37585:CDS
GGTAGTAGTCGAAGCAACAG+TGG 0.708997 5.3:+71593342 MS.gene37585:CDS
TTTGAACTAGAAGAACGGAA+CGG 0.720066 5.3:-71593441 None:intergenic
CTGACCATGAATGATCGGCG+TGG 0.757174 5.3:+71593075 MS.gene37585:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TACATTCAGAATGGTAAATA+TGG - chr5.3:71593242-71593261 None:intergenic 25.0%
! TATTGTTTGAACTAGAAGAA+CGG - chr5.3:71593449-71593468 None:intergenic 25.0%
! TGACCATGAAATACTAAAAA+AGG - chr5.3:71592949-71592968 None:intergenic 25.0%
! TGCAAAGAAAAATTTGAACT+TGG + chr5.3:71593189-71593208 MS.gene37585:CDS 25.0%
!! AATAATGGAACACGTTATAA+TGG + chr5.3:71593519-71593538 MS.gene37585:CDS 25.0%
!!! AATAATCAATATTCTGAGAC+TGG + chr5.3:71593465-71593484 MS.gene37585:CDS 25.0%
AAGGAACAATACATTCAGAA+TGG - chr5.3:71593251-71593270 None:intergenic 30.0%
ATTCTGAATGTATTGTTCCT+TGG + chr5.3:71593250-71593269 MS.gene37585:CDS 30.0%
TAATTTCATGAGGCATAGAA+TGG + chr5.3:71592837-71592856 MS.gene37585:CDS 30.0%
TATAACGTGTTCCATTATTC+TGG - chr5.3:71593518-71593537 None:intergenic 30.0%
TGTATAGCATCAAATAAGTC+AGG - chr5.3:71592760-71592779 None:intergenic 30.0%
! GATTTCGGTGACTATTTTAT+GGG + chr5.3:71593024-71593043 MS.gene37585:CDS 30.0%
! TCAAATTTTTCTTTGCAGAC+TGG - chr5.3:71593186-71593205 None:intergenic 30.0%
!! ATGCTGTTGATAATTTCATG+AGG + chr5.3:71592827-71592846 MS.gene37585:CDS 30.0%
!!! GGTCCTTTTTTAGTATTTCA+TGG + chr5.3:71592943-71592962 MS.gene37585:CDS 30.0%
AACAACTGACCATGAATGAT+CGG + chr5.3:71593070-71593089 MS.gene37585:CDS 35.0%
ACCCAAACTTTGATGTTAGA+GGG + chr5.3:71592869-71592888 MS.gene37585:CDS 35.0%
GAATGGTAAATATGGTCACA+TGG - chr5.3:71593234-71593253 None:intergenic 35.0%
TCCCTCTAACATCAAAGTTT+GGG - chr5.3:71592873-71592892 None:intergenic 35.0%
TGAATGTATTGTTCCTTGGT+TGG + chr5.3:71593254-71593273 MS.gene37585:CDS 35.0%
TTGATGCAATGCCTACTATT+AGG + chr5.3:71593124-71593143 MS.gene37585:CDS 35.0%
TTTGAACTAGAAGAACGGAA+CGG - chr5.3:71593444-71593463 None:intergenic 35.0%
! ATGCTATACATGCTTTTGTG+GGG + chr5.3:71592770-71592789 MS.gene37585:CDS 35.0%
! ATGGAACACGTTATAATGGA+TGG + chr5.3:71593523-71593542 MS.gene37585:CDS 35.0%
! CGATTTCGGTGACTATTTTA+TGG + chr5.3:71593023-71593042 MS.gene37585:CDS 35.0%
! GATGCTATACATGCTTTTGT+GGG + chr5.3:71592769-71592788 MS.gene37585:CDS 35.0%
! TGATGCTATACATGCTTTTG+TGG + chr5.3:71592768-71592787 MS.gene37585:CDS 35.0%
!! AATCAATATTCTGAGACTGG+AGG + chr5.3:71593468-71593487 MS.gene37585:CDS 35.0%
!! ATTGGTGTTATGAATGCAGT+CGG + chr5.3:71592602-71592621 MS.gene37585:CDS 35.0%
AAATACCTTTCCATCACGCT+CGG + chr5.3:71592717-71592736 MS.gene37585:CDS 40.0%
ACAAATCCCTCATCACAGTA+AGG - chr5.3:71592661-71592680 None:intergenic 40.0%
ACCAATGCTGACCAGAATAA+TGG + chr5.3:71593504-71593523 MS.gene37585:CDS 40.0%
CAAACTTTGATGTTAGAGGG+AGG + chr5.3:71592872-71592891 MS.gene37585:CDS 40.0%
CAAATCCCTCATCACAGTAA+GGG - chr5.3:71592660-71592679 None:intergenic 40.0%
CAAGAAATTAACGAGATGCG+AGG + chr5.3:71592682-71592701 MS.gene37585:CDS 40.0%
CACCCAAACTTTGATGTTAG+AGG + chr5.3:71592868-71592887 MS.gene37585:CDS 40.0%
CTCCCTCTAACATCAAAGTT+TGG - chr5.3:71592874-71592893 None:intergenic 40.0%
GAGTTATGTTGAACCAACCA+AGG - chr5.3:71593270-71593289 None:intergenic 40.0%
GGATTTCTCCTTCCATTGTT+CGG - chr5.3:71593405-71593424 None:intergenic 40.0%
GTATTTCATGGTCAAGTTCC+TGG + chr5.3:71592955-71592974 MS.gene37585:CDS 40.0%
TCCATTATTCTGGTCAGCAT+TGG - chr5.3:71593508-71593527 None:intergenic 40.0%
TGACAATAGGTTTGGGCTTA+TGG + chr5.3:71592804-71592823 MS.gene37585:CDS 40.0%
! AGAGGTTCTGACAATAGGTT+TGG + chr5.3:71592796-71592815 MS.gene37585:CDS 40.0%
! GAAATCCGTTTTCGTTTCTG+TGG + chr5.3:71593418-71593437 MS.gene37585:CDS 40.0%
! GAGGTTCTGACAATAGGTTT+GGG + chr5.3:71592797-71592816 MS.gene37585:CDS 40.0%
! GGTGACTATTTTATGGGTTC+TGG + chr5.3:71593030-71593049 MS.gene37585:CDS 40.0%
!!! CGTGATGGAAAGGTATTTTG+AGG - chr5.3:71592715-71592734 None:intergenic 40.0%
!!! CTATTTTATGGGTTCTGGAC+TGG + chr5.3:71593035-71593054 MS.gene37585:CDS 40.0%
AACGGCCACAGAAACGAAAA+CGG - chr5.3:71593426-71593445 None:intergenic 45.0%
AATACCTTTCCATCACGCTC+GGG + chr5.3:71592718-71592737 MS.gene37585:CDS 45.0%
AATTGAAGATCGTGCAGCTG+GGG - chr5.3:71593106-71593125 None:intergenic 45.0%
CAATTGAAGATCGTGCAGCT+GGG - chr5.3:71593107-71593126 None:intergenic 45.0%
GCCTACTATTAGGATCACAC+AGG + chr5.3:71593134-71593153 MS.gene37585:CDS 45.0%
GCCTGTGTGATCCTAATAGT+AGG - chr5.3:71593138-71593157 None:intergenic 45.0%
GTTTGCCCTTACTGTGATGA+GGG + chr5.3:71592652-71592671 MS.gene37585:CDS 45.0%
TCAATTGAAGATCGTGCAGC+TGG - chr5.3:71593108-71593127 None:intergenic 45.0%
TCTCTCCCTTCAAGCACAAT+TGG - chr5.3:71592628-71592647 None:intergenic 45.0%
TGGTGGAAATGGTAGCTCAA+GGG + chr5.3:71593362-71593381 MS.gene37585:CDS 45.0%
TGTCAAGTGGAGCAACACAT+TGG + chr5.3:71592584-71592603 MS.gene37585:CDS 45.0%
TTCATGAGGCATAGAATGGC+TGG + chr5.3:71592841-71592860 MS.gene37585:CDS 45.0%
TTCTCCTTCCATTGTTCGGA+CGG - chr5.3:71593401-71593420 None:intergenic 45.0%
AAATGGTAGCTCAAGGGGCA+GGG + chr5.3:71593368-71593387 MS.gene37585:CDS 50.0%
AGTAGTCGAAGCAACAGTGG+TGG + chr5.3:71593345-71593364 MS.gene37585:CDS 50.0%
AGTCGGCCAATTGTGCTTGA+AGG + chr5.3:71592619-71592638 MS.gene37585:CDS 50.0%
ATGGTCACATGGCATCTCTC+TGG - chr5.3:71593223-71593242 None:intergenic 50.0%
ATTGAAGATCGTGCAGCTGG+GGG - chr5.3:71593105-71593124 None:intergenic 50.0%
CAAGGACAGATGAGTTCTCG+TGG + chr5.3:71593321-71593340 MS.gene37585:CDS 50.0%
CCTGGACTAACCTTGCCTAA+TGG + chr5.3:71592973-71592992 MS.gene37585:CDS 50.0%
CGAGAACTCATCTGTCCTTG+TGG - chr5.3:71593321-71593340 None:intergenic 50.0%
CGTTTGCCCTTACTGTGATG+AGG + chr5.3:71592651-71592670 MS.gene37585:CDS 50.0%
CTTGTGGTGGTAGCTCAACA+CGG - chr5.3:71593305-71593324 None:intergenic 50.0%
GAACTCATCTGTCCTTGTGG+TGG - chr5.3:71593318-71593337 None:intergenic 50.0%
GGTAGTAGTCGAAGCAACAG+TGG + chr5.3:71593342-71593361 MS.gene37585:CDS 50.0%
GGTGGAAATGGTAGCTCAAG+GGG + chr5.3:71593363-71593382 MS.gene37585:CDS 50.0%
GTCGGCCAATTGTGCTTGAA+GGG + chr5.3:71592620-71592639 MS.gene37585:CDS 50.0%
TCTGTCCCAGTTCCTGAACA+GGG + chr5.3:71592901-71592920 MS.gene37585:CDS 50.0%
TTAAACTCTCCCGAGCGTGA+TGG - chr5.3:71592730-71592749 None:intergenic 50.0%
TTCTGTCCCAGTTCCTGAAC+AGG + chr5.3:71592900-71592919 MS.gene37585:CDS 50.0%
! CCATTAGGCAAGGTTAGTCC+AGG - chr5.3:71592976-71592995 None:intergenic 50.0%
! CGAAGCAACAGTGGTGGAAA+TGG + chr5.3:71593351-71593370 MS.gene37585:CDS 50.0%
! GGCACAGAGGTTCTGACAAT+AGG + chr5.3:71592791-71592810 MS.gene37585:CDS 50.0%
! GTGGTGGAAATGGTAGCTCA+AGG + chr5.3:71593361-71593380 MS.gene37585:CDS 50.0%
CGTGTTGAGCTACCACCACA+AGG + chr5.3:71593303-71593322 MS.gene37585:CDS 55.0%
CTGACCATGAATGATCGGCG+TGG + chr5.3:71593075-71593094 MS.gene37585:CDS 55.0%
GAAATGGTAGCTCAAGGGGC+AGG + chr5.3:71593367-71593386 MS.gene37585:CDS 55.0%
GAGAGTGACCGTCCGAACAA+TGG + chr5.3:71593390-71593409 MS.gene37585:CDS 55.0%
GGTAGCTCAACACGGCAAAC+AGG - chr5.3:71593297-71593316 None:intergenic 55.0%
GTGACCGTCCGAACAATGGA+AGG + chr5.3:71593394-71593413 MS.gene37585:CDS 55.0%
TCTCGGGCTTCCATTAGGCA+AGG - chr5.3:71592986-71593005 None:intergenic 55.0%
TGGACCACGCCGATCATTCA+TGG - chr5.3:71593082-71593101 None:intergenic 55.0%
TTGCCTAATGGAAGCCCGAG+AGG + chr5.3:71592985-71593004 MS.gene37585:CDS 55.0%
! CATGCTTTTGTGGGGCACAG+AGG + chr5.3:71592778-71592797 MS.gene37585:CDS 55.0%
! GGCTGGGGCGTTTATAGTTC+TGG + chr5.3:71592922-71592941 MS.gene37585:CDS 55.0%
CCACCTCTCGGGCTTCCATT+AGG - chr5.3:71592991-71593010 None:intergenic 60.0%
CCAGTTCCTGAACAGGGCTG+GGG + chr5.3:71592907-71592926 MS.gene37585:CDS 60.0%
CCCAGCCCTGTTCAGGAACT+GGG - chr5.3:71592909-71592928 None:intergenic 60.0%
CCCAGTTCCTGAACAGGGCT+GGG + chr5.3:71592906-71592925 MS.gene37585:CDS 60.0%
CCTAATGGAAGCCCGAGAGG+TGG + chr5.3:71592988-71593007 MS.gene37585:CDS 60.0%
GGTCCTAGGCGTGGCGATTT+CGG + chr5.3:71593009-71593028 MS.gene37585:CDS 60.0%
TAAACGCCCCAGCCCTGTTC+AGG - chr5.3:71592916-71592935 None:intergenic 60.0%
TCACCGAAATCGCCACGCCT+AGG - chr5.3:71593015-71593034 None:intergenic 60.0%
TCCCAGTTCCTGAACAGGGC+TGG + chr5.3:71592905-71592924 MS.gene37585:CDS 60.0%
! CTCTCCCGAGCGTGATGGAA+AGG - chr5.3:71592725-71592744 None:intergenic 60.0%
CACGCCTAGGACCACCTCTC+GGG - chr5.3:71593002-71593021 None:intergenic 65.0%
CCACGCCTAGGACCACCTCT+CGG - chr5.3:71593003-71593022 None:intergenic 65.0%
CCCCAGCCCTGTTCAGGAAC+TGG - chr5.3:71592910-71592929 None:intergenic 65.0%
GAAGATCGTGCAGCTGGGGG+TGG - chr5.3:71593102-71593121 None:intergenic 65.0%
GAAGCCCGAGAGGTGGTCCT+AGG + chr5.3:71592995-71593014 MS.gene37585:CDS 65.0%
CCGAGAGGTGGTCCTAGGCG+TGG + chr5.3:71593000-71593019 MS.gene37585:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 71592583 71593560 71592583 ID=MS.gene37585
chr5.3 mRNA 71592583 71593560 71592583 ID=MS.gene37585.t1;Parent=MS.gene37585
chr5.3 exon 71592583 71593560 71592583 ID=MS.gene37585.t1.exon1;Parent=MS.gene37585.t1
chr5.3 CDS 71592583 71593560 71592583 ID=cds.MS.gene37585.t1;Parent=MS.gene37585.t1
Gene Sequence

>MS.gene37585

ATGTCAAGTGGAGCAACACATTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACATCGTTTGCCCTTACTGTGATGAGGGATTTGTACAAGAAATTAACGAGATGCGAGGCACTGCACCTCAAAATACCTTTCCATCACGCTCGGGAGAGTTTAATCAAATGCCTGACTTATTTGATGCTATACATGCTTTTGTGGGGCACAGAGGTTCTGACAATAGGTTTGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGTCTAGTTCTGTCCCAGTTCCTGAACAGGGCTGGGGCGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGTCAAGTTCCTGGACTAACCTTGCCTAATGGAAGCCCGAGAGGTGGTCCTAGGCGTGGCGATTTCGGTGACTATTTTATGGGTTCTGGACTGGAAGAACTTATTGAACAACTGACCATGAATGATCGGCGTGGTCCACCCCCAGCTGCACGATCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCGCATCTTCGCTCAGATTCACATTGTCCAGTCTGCAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCTGAATGTATTGTTCCTTGGTTGGTTCAACATAACTCGTGTCCTGTTTGCCGTGTTGAGCTACCACCACAAGGACAGATGAGTTCTCGTGGTAGTAGTCGAAGCAACAGTGGTGGAAATGGTAGCTCAAGGGGCAGGGAGAGTGACCGTCCGAACAATGGAAGGAGAAATCCGTTTTCGTTTCTGTGGCCGTTCCGTTCTTCTAGTTCAAACAATAATCAATATTCTGAGACTGGAGGTAGCAGCTCTTCAACCAATGCTGACCAGAATAATGGAACACGTTATAATGGATGGCATTATGATAACTAA
Protein sequence

>MS.gene37585.t1

MSSGATHWCYECSRPIVLEGRDIVCPYCDEGFVQEINEMRGTAPQNTFPSRSGEFNQMPDLFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAGMHPNFDVRGRSSSVPVPEQGWGVYSSGPFLVFHGQVPGLTLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHNSCPVCRVELPPQGQMSSRGSSRSNSGGNGSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTRYNGWHYDN