AlfalfaGEDB | MS.gene057047

M. sativa cultivar XinJiangDaYe / MS.gene057047

KEGG: K11982
GO: GO:0003674 GO:0003824 GO:0004842 GO:0016740 GO:0019787 GO:0061630 GO:0061659 GO:0140096
PFAM: PF13639.9 PF13920.9 PF14369.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057047.t1	AET00138.2	99.1	325	3	0	1	325	6	330	4.40E-171	610.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057047.t1	O22197	51.1	262	95	8	2	252	3	242	1.1e-61	238.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057047.t1	G7KCR7	99.1	325	3	0	1	325	1	325	3.2e-171	610.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049341	MS.gene057047	0.801421	9.08E-49	-1.69E-46
MS.gene055162	MS.gene057047	0.805517	1.28E-49	-1.69E-46
MS.gene057047	MS.gene062729	0.801422	9.07E-49	-1.69E-46
MS.gene057047	MS.gene066067	0.809046	2.30E-50	-1.69E-46
MS.gene057047	MS.gene07389	0.812029	5.21E-51	-1.69E-46
MS.gene057047	MS.gene29405	0.81437	1.59E-51	-1.69E-46
MS.gene057047	MS.gene35373	0.819965	8.80E-53	-1.69E-46
MS.gene057047	MS.gene37585	0.892712	1.23E-74	-1.69E-46
MS.gene057047	MS.gene38287	0.807968	3.90E-50	-1.69E-46
MS.gene057047	MS.gene63673	0.806117	9.61E-50	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene037357	MS.gene057047	PPI
MS.gene049084	MS.gene057047	PPI
MS.gene029216	MS.gene057047	PPI
MS.gene23916	MS.gene057047	PPI
MS.gene23913	MS.gene057047	PPI
MS.gene93134	MS.gene057047	PPI
MS.gene05958	MS.gene057047	PPI
MS.gene05880	MS.gene057047	PPI
MS.gene015787	MS.gene057047	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057047.t1	MTR_5g088720	99.077	325	3	0	1	325	47	371	0.0	674
MS.gene057047.t1	MTR_5g088720	99.077	325	3	0	1	325	1	325	0.0	669
MS.gene057047.t1	MTR_5g088720	99.077	325	3	0	1	325	6	330	0.0	669
MS.gene057047.t1	MTR_0067s0100	61.409	298	95	6	1	297	2	280	1.73e-120	348
MS.gene057047.t1	MTR_1g051105	40.841	333	107	11	2	324	4	256	8.51e-71	221
MS.gene057047.t1	MTR_3g072630	34.630	257	140	5	7	245	20	266	1.15e-41	147
MS.gene057047.t1	MTR_3g072630	34.630	257	140	5	7	245	20	266	1.64e-41	147
MS.gene057047.t1	MTR_3g068005	35.769	260	133	7	1	245	1	241	1.40e-38	141
MS.gene057047.t1	MTR_6g079660	51.969	127	52	4	123	245	159	280	3.52e-37	137
MS.gene057047.t1	MTR_4g064570	35.341	249	119	9	6	245	11	226	8.40e-37	135
MS.gene057047.t1	MTR_5g080350	32.852	277	146	9	5	263	2	256	2.94e-36	134
MS.gene057047.t1	MTR_2g097620	52.000	100	43	1	151	245	135	234	2.59e-32	123
MS.gene057047.t1	MTR_3g083480	43.312	157	64	6	147	288	187	333	2.96e-32	123
MS.gene057047.t1	MTR_1g114320	31.387	274	141	10	8	264	14	257	4.66e-32	122
MS.gene057047.t1	MTR_7g074170	41.228	114	64	2	144	254	286	399	1.12e-25	107
MS.gene057047.t1	MTR_2g007340	51.685	89	42	1	157	244	157	245	2.12e-23	98.6
MS.gene057047.t1	MTR_1g114620	41.463	123	58	3	126	245	198	309	3.00e-23	98.6
MS.gene057047.t1	MTR_6g032960	36.986	146	79	5	147	288	184	320	5.00e-21	92.0
MS.gene057047.t1	MTR_5g041310	43.956	91	48	1	155	245	73	160	2.49e-19	85.5
MS.gene057047.t1	MTR_5g041330	45.055	91	47	1	155	245	63	150	3.34e-19	85.1
MS.gene057047.t1	MTR_4g110100	35.238	105	65	2	144	245	301	405	3.17e-17	82.4
MS.gene057047.t1	MTR_1g014710	36.957	92	53	2	158	244	186	277	1.66e-16	79.3
MS.gene057047.t1	MTR_3g088080	39.437	71	41	1	175	245	15	83	8.80e-16	72.0
MS.gene057047.t1	MTR_5g058530	49.153	59	29	1	187	244	210	268	6.29e-15	74.7
MS.gene057047.t1	MTR_6g016350	36.000	100	61	2	161	257	269	368	4.67e-14	72.8
MS.gene057047.t1	MTR_2g061790	54.762	42	19	0	200	241	109	150	5.06e-12	65.1
MS.gene057047.t1	MTR_4g106960	36.667	90	52	2	175	260	150	238	1.59e-11	64.7
MS.gene057047.t1	MTR_4g106960	36.667	90	52	2	175	260	150	238	1.87e-11	64.3
MS.gene057047.t1	MTR_4g106960	36.667	90	52	2	175	260	207	295	2.05e-11	64.7
MS.gene057047.t1	MTR_4g106960	36.667	90	52	2	175	260	207	295	2.42e-11	64.3
MS.gene057047.t1	MTR_5g022920	36.250	80	47	2	169	244	155	234	3.19e-11	62.8
MS.gene057047.t1	MTR_4g108830	36.508	63	39	1	180	241	126	188	6.92e-11	61.2
MS.gene057047.t1	MTR_4g108830	36.508	63	39	1	180	241	154	216	9.11e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene057047.t1	AT2G40830	46.686	347	139	10	2	324	3	327	4.76e-81	249
MS.gene057047.t1	AT2G40830	46.686	347	139	10	2	324	3	327	4.76e-81	249
MS.gene057047.t1	AT2G40830	46.686	347	139	10	2	324	3	327	4.76e-81	249
MS.gene057047.t1	AT2G40830	46.686	347	139	10	2	324	3	327	4.76e-81	249
MS.gene057047.t1	AT3G56580	48.387	310	100	12	6	297	7	274	1.64e-69	219
MS.gene057047.t1	AT3G56580	48.387	310	100	12	6	297	7	274	1.64e-69	219
MS.gene057047.t1	AT3G56580	48.387	310	100	12	6	297	7	274	1.64e-69	219
MS.gene057047.t1	AT3G19950	35.039	254	135	8	8	245	22	261	2.88e-43	152
MS.gene057047.t1	AT3G19950	34.646	254	136	8	8	245	80	319	6.41e-43	152
MS.gene057047.t1	AT3G19950	34.646	254	136	8	8	245	80	319	6.41e-43	152
MS.gene057047.t1	AT1G60360	34.202	307	156	15	7	290	24	307	1.77e-40	144
MS.gene057047.t1	AT3G10815	50.000	142	42	4	158	296	78	193	2.94e-39	137
MS.gene057047.t1	AT1G55530	28.521	284	168	6	7	262	9	285	2.50e-35	131
MS.gene057047.t1	AT1G55530	28.521	284	168	6	7	262	9	285	2.50e-35	131
MS.gene057047.t1	AT5G56340	40.909	176	77	6	133	288	195	363	2.49e-34	129
MS.gene057047.t1	AT1G55530	29.231	260	164	7	7	262	9	252	2.10e-33	125
MS.gene057047.t1	AT5G59550	45.378	119	58	1	151	262	143	261	6.29e-30	118
MS.gene057047.t1	AT4G26400	40.972	144	75	3	149	287	193	331	7.38e-30	117
MS.gene057047.t1	AT4G26400	40.972	144	75	3	149	287	193	331	7.38e-30	117
MS.gene057047.t1	AT2G39720	34.074	270	133	11	1	247	1	248	1.24e-29	117
MS.gene057047.t1	AT2G39720	34.074	270	133	11	1	247	1	248	1.24e-29	117
MS.gene057047.t1	AT3G46620	50.000	102	44	1	151	245	159	260	1.41e-29	117
MS.gene057047.t1	AT5G59550	43.651	126	64	1	144	262	241	366	1.63e-29	118
MS.gene057047.t1	AT3G13430	47.059	102	47	2	147	245	173	270	7.89e-28	110
MS.gene057047.t1	AT3G13430	47.059	102	47	2	147	245	173	270	7.89e-28	110
MS.gene057047.t1	AT3G13430	47.059	102	47	2	147	245	173	270	7.89e-28	110
MS.gene057047.t1	AT3G13430	47.059	102	47	2	147	245	173	270	7.89e-28	110
MS.gene057047.t1	AT5G01980	43.363	113	62	1	144	254	292	404	2.82e-26	108
MS.gene057047.t1	AT1G68180	39.041	146	80	3	144	289	82	218	2.31e-25	102
MS.gene057047.t1	AT3G60080	50.602	83	33	1	181	255	142	224	4.14e-20	89.4
MS.gene057047.t1	AT5G20910	35.772	123	66	4	138	249	159	279	4.35e-19	86.7
MS.gene057047.t1	AT3G02340	41.837	98	55	2	171	267	305	401	5.66e-19	87.4
MS.gene057047.t1	AT3G02340	41.837	98	55	2	171	267	305	401	5.66e-19	87.4
MS.gene057047.t1	AT2G44330	38.655	119	63	3	133	245	27	141	2.45e-18	81.6
MS.gene057047.t1	AT5G15820	44.737	76	41	1	171	245	261	336	2.96e-18	84.7
MS.gene057047.t1	AT1G26800	40.860	93	51	1	156	248	73	161	4.13e-18	81.6
MS.gene057047.t1	AT5G60820	35.294	136	83	2	114	245	283	417	1.96e-17	82.8
MS.gene057047.t1	AT5G08139	36.752	117	66	5	147	258	255	368	6.86e-17	80.9
MS.gene057047.t1	AT5G64920	40.000	105	56	2	147	244	197	301	4.93e-16	78.2
MS.gene057047.t1	AT1G14200	36.842	76	48	0	170	245	79	154	2.79e-15	73.2
MS.gene057047.t1	AT3G58720	45.070	71	38	1	197	266	141	211	7.91e-12	64.7
MS.gene057047.t1	AT3G58720	45.070	71	38	1	197	266	161	231	9.14e-12	64.7
MS.gene057047.t1	AT3G58720	45.070	71	38	1	197	266	169	239	1.29e-11	64.3
MS.gene057047.t1	AT5G02750	46.154	52	28	0	200	251	214	265	2.16e-11	63.9
MS.gene057047.t1	AT4G10150	30.928	97	65	2	182	276	93	189	2.43e-11	63.2
MS.gene057047.t1	AT3G58720	45.070	71	38	1	197	266	169	239	3.32e-11	63.9
MS.gene057047.t1	AT3G63530	32.609	92	53	3	159	244	153	241	9.65e-11	61.6
MS.gene057047.t1	AT3G63530	32.609	92	53	3	159	244	153	241	9.65e-11	61.6

Find 97 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTCCTAGGCGTGGCGATTTC+GGG	0.124234	5.4:-69837717	MS.gene057047:CDS
TGACAATAGGTTTGGGCTTA+TGG	0.144953	5.4:-69837923	MS.gene057047:CDS
GGTCCTAGGCGTGGCGATTT+CGG	0.205135	5.4:-69837718	MS.gene057047:CDS
TATAACGTGTTCCATTATTC+TGG	0.271470	5.4:+69837212	None:intergenic
TCCCAGTTCCTGAACAGGGC+TGG	0.287756	5.4:-69837822	MS.gene057047:CDS
GGCTGGGGCGTTTATAGTTC+TGG	0.293414	5.4:-69837805	MS.gene057047:CDS
CTCCCTCTAACATCAAAGTT+TGG	0.296005	5.4:+69837856	None:intergenic
GTATTTCATGGTCAAGTTCC+TGG	0.296498	5.4:-69837772	MS.gene057047:CDS
CCCAGTTCCTGAACAGGGCT+GGG	0.305104	5.4:-69837821	MS.gene057047:CDS
TTCTGTCCCAGTTCCTGAAC+AGG	0.322724	5.4:-69837827	MS.gene057047:CDS
ACCAATGCTGACCAGAATAA+TGG	0.327570	5.4:-69837223	MS.gene057047:CDS
AATAATGGAACACGTTATAA+TGG	0.335853	5.4:-69837208	MS.gene057047:CDS
TTGATGCAATGCCTACTATT+AGG	0.339004	5.4:-69837603	MS.gene057047:CDS
CCCCAGCCCTGTTCAGGAAC+TGG	0.343591	5.4:+69837820	None:intergenic
TACATTCAGAATGGTAAATA+TGG	0.350279	5.4:+69837488	None:intergenic
TAAACGCCCCAGCCCTGTTC+AGG	0.367352	5.4:+69837814	None:intergenic
AGAGGTTCTGACAATAGGTT+TGG	0.376287	5.4:-69837931	MS.gene057047:CDS
CACCCAAACTTTGATGTTAG+AGG	0.383978	5.4:-69837859	MS.gene057047:CDS
TCTCTCCCTTCAAGCACAAT+TGG	0.421897	5.4:+69838102	None:intergenic
TCCCTCTAACATCAAAGTTT+GGG	0.425458	5.4:+69837857	None:intergenic
TCCATTATTCTGGTCAGCAT+TGG	0.433872	5.4:+69837222	None:intergenic
GAAATGGTAGCTCAAGGGGC+AGG	0.434859	5.4:-69837360	MS.gene057047:CDS
CCACCTCTCGGGCTTCCATT+AGG	0.440593	5.4:+69837739	None:intergenic
CCTGGACTAACCTTGCCTAA+TGG	0.441564	5.4:-69837754	MS.gene057047:CDS
TCAATTGAAGATCGTGCAGC+TGG	0.442427	5.4:+69837622	None:intergenic
CGAAGCAACAGTGGTGGAAA+TGG	0.442575	5.4:-69837376	MS.gene057047:CDS
GGATTTCTCCTTCCATTGTT+CGG	0.449206	5.4:+69837325	None:intergenic
TGGACCACGCCGATCATTCA+TGG	0.449429	5.4:+69837648	None:intergenic
CCCAGCCCTGTTCAGGAACT+GGG	0.453761	5.4:+69837821	None:intergenic
ATTCTGAATGTATTGTTCCT+TGG	0.454347	5.4:-69837477	MS.gene057047:CDS
GGCACAGAGGTTCTGACAAT+AGG	0.463327	5.4:-69837936	MS.gene057047:CDS
CACGCCTAGGACCACCTCTC+GGG	0.474492	5.4:+69837728	None:intergenic
TTCATGAGGCATAGAATGGC+TGG	0.476150	5.4:-69837886	MS.gene057047:CDS
GGTAGCTCAACACGGCAAAC+AGG	0.476761	5.4:+69837433	None:intergenic
TGAATGTATTGTTCCTTGGT+TGG	0.476923	5.4:-69837473	MS.gene057047:CDS
GAGGTTCTGACAATAGGTTT+GGG	0.480899	5.4:-69837930	MS.gene057047:CDS
CCACGCCTAGGACCACCTCT+CGG	0.482101	5.4:+69837727	None:intergenic
AATAATCAATATTCTGAGAC+TGG	0.484064	5.4:-69837262	MS.gene057047:CDS
TTCTCCTTCCATTGTTCGGA+CGG	0.492985	5.4:+69837329	None:intergenic
GAAGCCCGAGAGGTGGTCCT+AGG	0.494733	5.4:-69837732	MS.gene057047:CDS
ATGGTCACATGGCATCTCTC+TGG	0.495307	5.4:+69837507	None:intergenic
TGTATAGCATCAAATAAGTC+AGG	0.495328	5.4:+69837970	None:intergenic
TAATTTCATGAGGCATAGAA+TGG	0.500689	5.4:-69837890	MS.gene057047:CDS
ACAAATCCCTCATCACAGTA+AGG	0.515163	5.4:+69838069	None:intergenic
CCATTAGGCAAGGTTAGTCC+AGG	0.516692	5.4:+69837754	None:intergenic
CCAGTTCCTGAACAGGGCTG+GGG	0.517490	5.4:-69837820	MS.gene057047:CDS
CAATTGAAGATCGTGCAGCT+GGG	0.527634	5.4:+69837623	None:intergenic
CTCTCCCGAGCGTGATGGAA+AGG	0.532737	5.4:+69838005	None:intergenic
AAATACCTTTCCATCACGCT+CGG	0.536583	5.4:-69838010	MS.gene057047:CDS
GTTTGCCCTTACTGTGATGA+GGG	0.546875	5.4:-69838075	MS.gene057047:CDS
GCCTGTGTGATCCTAATAGT+AGG	0.552792	5.4:+69837592	None:intergenic
GTGGTGGAAATGGTAGCTCA+AGG	0.554250	5.4:-69837366	MS.gene057047:CDS
AACGGCCACAGAAACGAAAA+CGG	0.554921	5.4:+69837304	None:intergenic
AGTCGGCCAATTGTGCTTGA+AGG	0.556833	5.4:-69838108	MS.gene057047:CDS
GTTGAAGAAATAATGTCAAG+TGG	0.558708	5.4:-69838156	None:intergenic
AACAACTGACCATGAATGAT+CGG	0.561179	5.4:-69837657	MS.gene057047:CDS
ATGGAACACGTTATAATGGA+TGG	0.563370	5.4:-69837204	MS.gene057047:CDS
ACCCAAACTTTGATGTTAGA+GGG	0.565011	5.4:-69837858	MS.gene057047:CDS
GTCGGCCAATTGTGCTTGAA+GGG	0.565165	5.4:-69838107	MS.gene057047:CDS
AAATGGTAGCTCAAGGGGCA+GGG	0.567954	5.4:-69837359	MS.gene057047:CDS
TGGTGGAAATGGTAGCTCAA+GGG	0.569039	5.4:-69837365	MS.gene057047:CDS
GAGAGTGACCGTCCGAACAA+TGG	0.571454	5.4:-69837337	MS.gene057047:CDS
AAGGAACAATACATTCAGAA+TGG	0.573178	5.4:+69837479	None:intergenic
AATTGAAGATCGTGCAGCTG+GGG	0.576072	5.4:+69837624	None:intergenic
AATACCTTTCCATCACGCTC+GGG	0.577219	5.4:-69838009	MS.gene057047:CDS
GGTGGAAATGGTAGCTCAAG+GGG	0.581164	5.4:-69837364	MS.gene057047:CDS
CGTTTGCCCTTACTGTGATG+AGG	0.582429	5.4:-69838076	MS.gene057047:CDS
TTAAACTCTCCCGAGCGTGA+TGG	0.588811	5.4:+69838000	None:intergenic
TCCCCGAAATCGCCACGCCT+AGG	0.588850	5.4:+69837715	None:intergenic
TCCTAGGCGTGGCGATTTCG+GGG	0.596302	5.4:-69837716	MS.gene057047:CDS
TATTGTTTGAACTAGAAGAA+CGG	0.600491	5.4:+69837281	None:intergenic
TCTCGGGCTTCCATTAGGCA+AGG	0.606325	5.4:+69837744	None:intergenic
CCGAGAGGTGGTCCTAGGCG+TGG	0.606422	5.4:-69837727	MS.gene057047:CDS
ATTGAAGATCGTGCAGCTGG+GGG	0.607854	5.4:+69837625	None:intergenic
TCTGTCCCAGTTCCTGAACA+GGG	0.612021	5.4:-69837826	MS.gene057047:CDS
CAAATCCCTCATCACAGTAA+GGG	0.613393	5.4:+69838070	None:intergenic
CGAGAACTCATCTGTCCTTG+TGG	0.617859	5.4:+69837409	None:intergenic
GTGACCGTCCGAACAATGGA+AGG	0.619630	5.4:-69837333	MS.gene057047:CDS
GAATGGTAAATATGGTCACA+TGG	0.629134	5.4:+69837496	None:intergenic
AGTAGTCGAAGCAACAGTGG+TGG	0.638220	5.4:-69837382	MS.gene057047:CDS
TGTCAAGTGGAGCAACACAT+TGG	0.641943	5.4:-69838143	MS.gene057047:CDS
CCTAATGGAAGCCCGAGAGG+TGG	0.642945	5.4:-69837739	MS.gene057047:CDS
ATTGGTGTTATGAATGCAGT+CGG	0.644987	5.4:-69838125	MS.gene057047:CDS
CTTGTGGTGGTAGCTCAACA+CGG	0.645208	5.4:+69837425	None:intergenic
CGTGTTGAGCTACCACCACA+AGG	0.646648	5.4:-69837424	MS.gene057047:CDS
AATCAATATTCTGAGACTGG+AGG	0.668736	5.4:-69837259	MS.gene057047:CDS
TTGCCTAATGGAAGCCCGAG+AGG	0.670811	5.4:-69837742	MS.gene057047:CDS
GAACTCATCTGTCCTTGTGG+TGG	0.671137	5.4:+69837412	None:intergenic
CAAGGACAGATGAGTTCTCG+TGG	0.679090	5.4:-69837406	MS.gene057047:CDS
GAGTTATGTTGAACCAACCA+AGG	0.692810	5.4:+69837460	None:intergenic
CAAGAAATTAACGAGATGCG+AGG	0.695840	5.4:-69838045	MS.gene057047:CDS
CAAACTTTGATGTTAGAGGG+AGG	0.698975	5.4:-69837855	MS.gene057047:CDS
ATGCTGTTGATAATTTCATG+AGG	0.699793	5.4:-69837900	MS.gene057047:CDS
GCCTACTATTAGGATCACAC+AGG	0.708442	5.4:-69837593	MS.gene057047:CDS
GGTAGTAGTCGAAGCAACAG+TGG	0.708997	5.4:-69837385	MS.gene057047:CDS
TTTGAACTAGAAGAACGGAA+CGG	0.720066	5.4:+69837286	None:intergenic
CTGACCATGAATGATCGGCG+TGG	0.757174	5.4:-69837652	MS.gene057047:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TACATTCAGAATGGTAAATA+TGG	+	chr5.4:69837848-69837867	None:intergenic	25.0%
!	TATTGTTTGAACTAGAAGAA+CGG	+	chr5.4:69838055-69838074	None:intergenic	25.0%
!	TGACCATGAAATACTAAAAA+AGG	+	chr5.4:69837555-69837574	None:intergenic	25.0%
!	TGCAAAGAAAAATTTGAACT+TGG	-	chr5.4:69837795-69837814	MS.gene057047:CDS	25.0%
!!	AATAATGGAACACGTTATAA+TGG	-	chr5.4:69838125-69838144	MS.gene057047:CDS	25.0%
!!!	AATAATCAATATTCTGAGAC+TGG	-	chr5.4:69838071-69838090	MS.gene057047:CDS	25.0%
	AAGGAACAATACATTCAGAA+TGG	+	chr5.4:69837857-69837876	None:intergenic	30.0%
	ATTCTGAATGTATTGTTCCT+TGG	-	chr5.4:69837856-69837875	MS.gene057047:CDS	30.0%
	TAATTTCATGAGGCATAGAA+TGG	-	chr5.4:69837443-69837462	MS.gene057047:CDS	30.0%
	TATAACGTGTTCCATTATTC+TGG	+	chr5.4:69838124-69838143	None:intergenic	30.0%
	TGTATAGCATCAAATAAGTC+AGG	+	chr5.4:69837366-69837385	None:intergenic	30.0%
!	TCAAATTTTTCTTTGCAGAC+TGG	+	chr5.4:69837792-69837811	None:intergenic	30.0%
!!	ATGCTGTTGATAATTTCATG+AGG	-	chr5.4:69837433-69837452	MS.gene057047:CDS	30.0%
!!!	GGTCCTTTTTTAGTATTTCA+TGG	-	chr5.4:69837549-69837568	MS.gene057047:CDS	30.0%
	AACAACTGACCATGAATGAT+CGG	-	chr5.4:69837676-69837695	MS.gene057047:CDS	35.0%
	ACCCAAACTTTGATGTTAGA+GGG	-	chr5.4:69837475-69837494	MS.gene057047:CDS	35.0%
	GAATGGTAAATATGGTCACA+TGG	+	chr5.4:69837840-69837859	None:intergenic	35.0%
	TCCCTCTAACATCAAAGTTT+GGG	+	chr5.4:69837479-69837498	None:intergenic	35.0%
	TGAATGTATTGTTCCTTGGT+TGG	-	chr5.4:69837860-69837879	MS.gene057047:CDS	35.0%
	TTGATGCAATGCCTACTATT+AGG	-	chr5.4:69837730-69837749	MS.gene057047:CDS	35.0%
	TTTGAACTAGAAGAACGGAA+CGG	+	chr5.4:69838050-69838069	None:intergenic	35.0%
!	ATGCTATACATGCTTTTGTG+GGG	-	chr5.4:69837376-69837395	MS.gene057047:CDS	35.0%
!	ATGGAACACGTTATAATGGA+TGG	-	chr5.4:69838129-69838148	MS.gene057047:CDS	35.0%
!	GATGCTATACATGCTTTTGT+GGG	-	chr5.4:69837375-69837394	MS.gene057047:CDS	35.0%
!	GATTTCGGGGACTATTTTAT+GGG	-	chr5.4:69837630-69837649	MS.gene057047:CDS	35.0%
!	TGATGCTATACATGCTTTTG+TGG	-	chr5.4:69837374-69837393	MS.gene057047:CDS	35.0%
!!	AATCAATATTCTGAGACTGG+AGG	-	chr5.4:69838074-69838093	MS.gene057047:CDS	35.0%
!!	ATTGGTGTTATGAATGCAGT+CGG	-	chr5.4:69837208-69837227	MS.gene057047:CDS	35.0%
	AAATACCTTTCCATCACGCT+CGG	-	chr5.4:69837323-69837342	MS.gene057047:CDS	40.0%
	ACAAATCCCTCATCACAGTA+AGG	+	chr5.4:69837267-69837286	None:intergenic	40.0%
	ACCAATGCTGACCAGAATAA+TGG	-	chr5.4:69838110-69838129	MS.gene057047:CDS	40.0%
	CAAACTTTGATGTTAGAGGG+AGG	-	chr5.4:69837478-69837497	MS.gene057047:CDS	40.0%
	CAAATCCCTCATCACAGTAA+GGG	+	chr5.4:69837266-69837285	None:intergenic	40.0%
	CAAGAAATTAACGAGATGCG+AGG	-	chr5.4:69837288-69837307	MS.gene057047:CDS	40.0%
	CACCCAAACTTTGATGTTAG+AGG	-	chr5.4:69837474-69837493	MS.gene057047:CDS	40.0%
	CTCCCTCTAACATCAAAGTT+TGG	+	chr5.4:69837480-69837499	None:intergenic	40.0%
	GAGTTATGTTGAACCAACCA+AGG	+	chr5.4:69837876-69837895	None:intergenic	40.0%
	GGATTTCTCCTTCCATTGTT+CGG	+	chr5.4:69838011-69838030	None:intergenic	40.0%
	GTATTTCATGGTCAAGTTCC+TGG	-	chr5.4:69837561-69837580	MS.gene057047:CDS	40.0%
	TCCATTATTCTGGTCAGCAT+TGG	+	chr5.4:69838114-69838133	None:intergenic	40.0%
	TGACAATAGGTTTGGGCTTA+TGG	-	chr5.4:69837410-69837429	MS.gene057047:CDS	40.0%
!	AGAGGTTCTGACAATAGGTT+TGG	-	chr5.4:69837402-69837421	MS.gene057047:CDS	40.0%
!	CGATTTCGGGGACTATTTTA+TGG	-	chr5.4:69837629-69837648	MS.gene057047:CDS	40.0%
!	GAAATCCGTTTTCGTTTCTG+TGG	-	chr5.4:69838024-69838043	MS.gene057047:CDS	40.0%
!	GAGGTTCTGACAATAGGTTT+GGG	-	chr5.4:69837403-69837422	MS.gene057047:CDS	40.0%
!!!	CGTGATGGAAAGGTATTTTG+AGG	+	chr5.4:69837321-69837340	None:intergenic	40.0%
!!!	CTATTTTATGGGTTCTGGAC+TGG	-	chr5.4:69837641-69837660	MS.gene057047:CDS	40.0%
	AACGGCCACAGAAACGAAAA+CGG	+	chr5.4:69838032-69838051	None:intergenic	45.0%
	AATACCTTTCCATCACGCTC+GGG	-	chr5.4:69837324-69837343	MS.gene057047:CDS	45.0%
	AATTGAAGATCGTGCAGCTG+GGG	+	chr5.4:69837712-69837731	None:intergenic	45.0%
	CAATTGAAGATCGTGCAGCT+GGG	+	chr5.4:69837713-69837732	None:intergenic	45.0%
	GCCTACTATTAGGATCACAC+AGG	-	chr5.4:69837740-69837759	MS.gene057047:CDS	45.0%
	GCCTGTGTGATCCTAATAGT+AGG	+	chr5.4:69837744-69837763	None:intergenic	45.0%
	GTTTGCCCTTACTGTGATGA+GGG	-	chr5.4:69837258-69837277	MS.gene057047:CDS	45.0%
	TCAATTGAAGATCGTGCAGC+TGG	+	chr5.4:69837714-69837733	None:intergenic	45.0%
	TCTCTCCCTTCAAGCACAAT+TGG	+	chr5.4:69837234-69837253	None:intergenic	45.0%
	TGGTGGAAATGGTAGCTCAA+GGG	-	chr5.4:69837968-69837987	MS.gene057047:CDS	45.0%
	TGTCAAGTGGAGCAACACAT+TGG	-	chr5.4:69837190-69837209	MS.gene057047:CDS	45.0%
	TTCATGAGGCATAGAATGGC+TGG	-	chr5.4:69837447-69837466	MS.gene057047:CDS	45.0%
	TTCTCCTTCCATTGTTCGGA+CGG	+	chr5.4:69838007-69838026	None:intergenic	45.0%
!	GGGGACTATTTTATGGGTTC+TGG	-	chr5.4:69837636-69837655	MS.gene057047:CDS	45.0%
	AAATGGTAGCTCAAGGGGCA+GGG	-	chr5.4:69837974-69837993	MS.gene057047:CDS	50.0%
	AGTAGTCGAAGCAACAGTGG+TGG	-	chr5.4:69837951-69837970	MS.gene057047:CDS	50.0%
	AGTCGGCCAATTGTGCTTGA+AGG	-	chr5.4:69837225-69837244	MS.gene057047:CDS	50.0%
	ATGGTCACATGGCATCTCTC+TGG	+	chr5.4:69837829-69837848	None:intergenic	50.0%
	ATTGAAGATCGTGCAGCTGG+GGG	+	chr5.4:69837711-69837730	None:intergenic	50.0%
	CAAGGACAGATGAGTTCTCG+TGG	-	chr5.4:69837927-69837946	MS.gene057047:CDS	50.0%
	CCTGGACTAACCTTGCCTAA+TGG	-	chr5.4:69837579-69837598	MS.gene057047:CDS	50.0%
	CGAGAACTCATCTGTCCTTG+TGG	+	chr5.4:69837927-69837946	None:intergenic	50.0%
	CGTTTGCCCTTACTGTGATG+AGG	-	chr5.4:69837257-69837276	MS.gene057047:CDS	50.0%
	CTTGTGGTGGTAGCTCAACA+CGG	+	chr5.4:69837911-69837930	None:intergenic	50.0%
	GAACTCATCTGTCCTTGTGG+TGG	+	chr5.4:69837924-69837943	None:intergenic	50.0%
	GGTAGTAGTCGAAGCAACAG+TGG	-	chr5.4:69837948-69837967	MS.gene057047:CDS	50.0%
	GGTGGAAATGGTAGCTCAAG+GGG	-	chr5.4:69837969-69837988	MS.gene057047:CDS	50.0%
	GTCGGCCAATTGTGCTTGAA+GGG	-	chr5.4:69837226-69837245	MS.gene057047:CDS	50.0%
	TCTGTCCCAGTTCCTGAACA+GGG	-	chr5.4:69837507-69837526	MS.gene057047:CDS	50.0%
	TTAAACTCTCCCGAGCGTGA+TGG	+	chr5.4:69837336-69837355	None:intergenic	50.0%
	TTCTGTCCCAGTTCCTGAAC+AGG	-	chr5.4:69837506-69837525	MS.gene057047:CDS	50.0%
!	CCATTAGGCAAGGTTAGTCC+AGG	+	chr5.4:69837582-69837601	None:intergenic	50.0%
!	CGAAGCAACAGTGGTGGAAA+TGG	-	chr5.4:69837957-69837976	MS.gene057047:CDS	50.0%
!	GGCACAGAGGTTCTGACAAT+AGG	-	chr5.4:69837397-69837416	MS.gene057047:CDS	50.0%
!	GTGGTGGAAATGGTAGCTCA+AGG	-	chr5.4:69837967-69837986	MS.gene057047:CDS	50.0%
	CGTGTTGAGCTACCACCACA+AGG	-	chr5.4:69837909-69837928	MS.gene057047:CDS	55.0%
	CTGACCATGAATGATCGGCG+TGG	-	chr5.4:69837681-69837700	MS.gene057047:CDS	55.0%
	GAAATGGTAGCTCAAGGGGC+AGG	-	chr5.4:69837973-69837992	MS.gene057047:CDS	55.0%
	GAGAGTGACCGTCCGAACAA+TGG	-	chr5.4:69837996-69838015	MS.gene057047:CDS	55.0%
	GGTAGCTCAACACGGCAAAC+AGG	+	chr5.4:69837903-69837922	None:intergenic	55.0%
	GTGACCGTCCGAACAATGGA+AGG	-	chr5.4:69838000-69838019	MS.gene057047:CDS	55.0%
	TCTCGGGCTTCCATTAGGCA+AGG	+	chr5.4:69837592-69837611	None:intergenic	55.0%
	TGGACCACGCCGATCATTCA+TGG	+	chr5.4:69837688-69837707	None:intergenic	55.0%
	TTGCCTAATGGAAGCCCGAG+AGG	-	chr5.4:69837591-69837610	MS.gene057047:CDS	55.0%
!	CATGCTTTTGTGGGGCACAG+AGG	-	chr5.4:69837384-69837403	MS.gene057047:CDS	55.0%
!	GGCTGGGGCGTTTATAGTTC+TGG	-	chr5.4:69837528-69837547	MS.gene057047:CDS	55.0%
	CCACCTCTCGGGCTTCCATT+AGG	+	chr5.4:69837597-69837616	None:intergenic	60.0%
	CCAGTTCCTGAACAGGGCTG+GGG	-	chr5.4:69837513-69837532	MS.gene057047:CDS	60.0%
	CCCAGCCCTGTTCAGGAACT+GGG	+	chr5.4:69837515-69837534	None:intergenic	60.0%
	CCCAGTTCCTGAACAGGGCT+GGG	-	chr5.4:69837512-69837531	MS.gene057047:CDS	60.0%
	CCTAATGGAAGCCCGAGAGG+TGG	-	chr5.4:69837594-69837613	MS.gene057047:CDS	60.0%
	GGTCCTAGGCGTGGCGATTT+CGG	-	chr5.4:69837615-69837634	MS.gene057047:CDS	60.0%
	GTCCTAGGCGTGGCGATTTC+GGG	-	chr5.4:69837616-69837635	MS.gene057047:CDS	60.0%
	TAAACGCCCCAGCCCTGTTC+AGG	+	chr5.4:69837522-69837541	None:intergenic	60.0%
	TCCCAGTTCCTGAACAGGGC+TGG	-	chr5.4:69837511-69837530	MS.gene057047:CDS	60.0%
	TCCTAGGCGTGGCGATTTCG+GGG	-	chr5.4:69837617-69837636	MS.gene057047:CDS	60.0%
!	CTCTCCCGAGCGTGATGGAA+AGG	+	chr5.4:69837331-69837350	None:intergenic	60.0%
	CACGCCTAGGACCACCTCTC+GGG	+	chr5.4:69837608-69837627	None:intergenic	65.0%
	CCACGCCTAGGACCACCTCT+CGG	+	chr5.4:69837609-69837628	None:intergenic	65.0%
	CCCCAGCCCTGTTCAGGAAC+TGG	+	chr5.4:69837516-69837535	None:intergenic	65.0%
	GAAGATCGTGCAGCTGGGGG+TGG	+	chr5.4:69837708-69837727	None:intergenic	65.0%
	GAAGCCCGAGAGGTGGTCCT+AGG	-	chr5.4:69837601-69837620	MS.gene057047:CDS	65.0%
	TCCCCGAAATCGCCACGCCT+AGG	+	chr5.4:69837621-69837640	None:intergenic	65.0%
	CCGAGAGGTGGTCCTAGGCG+TGG	-	chr5.4:69837606-69837625	MS.gene057047:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	69837189	69838166	69837189	ID=MS.gene057047
chr5.4	mRNA	69837189	69838166	69837189	ID=MS.gene057047.t1;Parent=MS.gene057047
chr5.4	exon	69837189	69838166	69837189	ID=MS.gene057047.t1.exon1;Parent=MS.gene057047.t1
chr5.4	CDS	69837189	69838166	69837189	ID=cds.MS.gene057047.t1;Parent=MS.gene057047.t1

Gene Sequence

>MS.gene057047

ATGTCAAGTGGAGCAACACATTGGTGTTATGAATGCAGTCGGCCAATTGTGCTTGAAGGGAGAGACATCGTTTGCCCTTACTGTGATGAGGGATTTGTACAAGAAATTAACGAGATGCGAGGCACTGCACCTCAAAATACCTTTCCATCACGCTCGGGAGAGTTTAATCAAATGCCTGACTTATTTGATGCTATACATGCTTTTGTGGGGCACAGAGGTTCTGACAATAGGTTTGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAATGCACCCAAACTTTGATGTTAGAGGGAGGTCTAGTTCTGTCCCAGTTCCTGAACAGGGCTGGGGCGTTTATAGTTCTGGTCCTTTTTTAGTATTTCATGGTCAAGTTCCTGGACTAACCTTGCCTAATGGAAGCCCGAGAGGTGGTCCTAGGCGTGGCGATTTCGGGGACTATTTTATGGGTTCTGGACTGGAAGAACTTATTGAACAACTGACCATGAATGATCGGCGTGGTCCACCCCCAGCTGCACGATCTTCAATTGATGCAATGCCTACTATTAGGATCACACAGGCGCATCTTCGCTCAGATTCACATTGTCCAGTCTGCAAAGAAAAATTTGAACTTGGTTCTGAAGCCAGAGAGATGCCATGTGACCATATTTACCATTCTGAATGTATTGTTCCTTGGTTGGTTCAACATAACTCGTGTCCTGTTTGCCGTGTTGAGCTACCACCACAAGGACAGATGAGTTCTCGTGGTAGTAGTCGAAGCAACAGTGGTGGAAATGGTAGCTCAAGGGGCAGGGAGAGTGACCGTCCGAACAATGGAAGGAGAAATCCGTTTTCGTTTCTGTGGCCGTTCCGTTCTTCTAGTTCAAACAATAATCAATATTCTGAGACTGGAGGTAGCAGCTCTTCAACCAATGCTGACCAGAATAATGGAACACGTTATAATGGATGGCATTATGATAACTAA

Protein sequence

>MS.gene057047.t1

MSSGATHWCYECSRPIVLEGRDIVCPYCDEGFVQEINEMRGTAPQNTFPSRSGEFNQMPDLFDAIHAFVGHRGSDNRFGLMDAVDNFMRHRMAGMHPNFDVRGRSSSVPVPEQGWGVYSSGPFLVFHGQVPGLTLPNGSPRGGPRRGDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRSDSHCPVCKEKFELGSEAREMPCDHIYHSECIVPWLVQHNSCPVCRVELPPQGQMSSRGSSRSNSGGNGSSRGRESDRPNNGRRNPFSFLWPFRSSSSNNNQYSETGGSSSSTNADQNNGTRYNGWHYDN