Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074404.t1 | RHN68842.1 | 93.4 | 572 | 38 | 0 | 1 | 572 | 1 | 572 | 0.00E+00 | 1135.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074404.t1 | P14133 | 67.4 | 565 | 183 | 1 | 1 | 565 | 15 | 578 | 3.5e-236 | 818.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074404.t1 | A0A396ITF9 | 93.4 | 572 | 38 | 0 | 1 | 572 | 1 | 572 | 0.0e+00 | 1135.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056856 | MS.gene074404 | 0.817162 | 3.80E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene074404 | MS.gene059694 | PPI |
MS.gene074404 | MS.gene70354 | PPI |
MS.gene030765 | MS.gene074404 | PPI |
MS.gene074404 | MS.gene030762 | PPI |
MS.gene004011 | MS.gene074404 | PPI |
MS.gene074404 | MS.gene021147 | PPI |
MS.gene074404 | MS.gene30569 | PPI |
MS.gene28968 | MS.gene074404 | PPI |
MS.gene074404 | MS.gene059697 | PPI |
MS.gene074404 | MS.gene41139 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074404.t1 | MTR_3g078730 | 88.811 | 572 | 37 | 1 | 1 | 572 | 1 | 545 | 0.0 | 1029 |
MS.gene074404.t1 | MTR_3g078740 | 78.020 | 596 | 106 | 3 | 1 | 572 | 1 | 595 | 0.0 | 968 |
MS.gene074404.t1 | MTR_3g078700 | 79.505 | 566 | 88 | 2 | 1 | 565 | 1 | 539 | 0.0 | 932 |
MS.gene074404.t1 | MTR_8g091390 | 50.536 | 560 | 259 | 6 | 17 | 569 | 26 | 574 | 0.0 | 573 |
MS.gene074404.t1 | MTR_5g020620 | 32.332 | 566 | 327 | 17 | 1 | 544 | 8 | 539 | 3.32e-75 | 249 |
MS.gene074404.t1 | MTR_7g062250 | 31.699 | 571 | 319 | 16 | 7 | 540 | 16 | 552 | 2.62e-72 | 242 |
MS.gene074404.t1 | MTR_5g083360 | 30.676 | 577 | 335 | 19 | 1 | 544 | 1 | 545 | 1.98e-70 | 237 |
MS.gene074404.t1 | MTR_5g069680 | 33.155 | 561 | 327 | 19 | 4 | 545 | 6 | 537 | 3.68e-70 | 236 |
MS.gene074404.t1 | MTR_7g058690 | 31.217 | 567 | 335 | 14 | 7 | 542 | 14 | 556 | 4.20e-70 | 236 |
MS.gene074404.t1 | MTR_5g020600 | 30.986 | 568 | 333 | 18 | 1 | 544 | 12 | 544 | 1.79e-68 | 231 |
MS.gene074404.t1 | MTR_7g060460 | 30.998 | 571 | 339 | 15 | 2 | 540 | 8 | 555 | 1.89e-68 | 232 |
MS.gene074404.t1 | MTR_7g458880 | 30.890 | 573 | 331 | 17 | 4 | 540 | 11 | 554 | 1.94e-68 | 232 |
MS.gene074404.t1 | MTR_4g064530 | 31.627 | 547 | 312 | 18 | 25 | 540 | 44 | 559 | 2.47e-67 | 229 |
MS.gene074404.t1 | MTR_4g015120 | 30.824 | 558 | 335 | 17 | 7 | 544 | 9 | 535 | 1.05e-66 | 227 |
MS.gene074404.t1 | MTR_3g101635 | 30.435 | 575 | 336 | 18 | 1 | 544 | 3 | 544 | 1.81e-66 | 226 |
MS.gene074404.t1 | MTR_2g008330 | 31.327 | 565 | 324 | 19 | 12 | 544 | 25 | 557 | 1.92e-66 | 226 |
MS.gene074404.t1 | MTR_3g462760 | 32.468 | 539 | 321 | 15 | 22 | 544 | 23 | 534 | 1.52e-65 | 224 |
MS.gene074404.t1 | MTR_5g073210 | 30.906 | 563 | 328 | 20 | 9 | 541 | 4 | 535 | 2.33e-65 | 223 |
MS.gene074404.t1 | MTR_3g101640 | 31.034 | 580 | 333 | 21 | 1 | 544 | 1 | 549 | 1.49e-64 | 221 |
MS.gene074404.t1 | MTR_7g062310 | 31.294 | 572 | 326 | 17 | 21 | 555 | 43 | 584 | 2.40e-64 | 221 |
MS.gene074404.t1 | MTR_5g081810 | 31.298 | 524 | 319 | 13 | 36 | 544 | 10 | 507 | 6.37e-63 | 216 |
MS.gene074404.t1 | MTR_4g064530 | 31.492 | 543 | 298 | 23 | 25 | 530 | 44 | 549 | 3.09e-60 | 209 |
MS.gene074404.t1 | MTR_3g071890 | 30.360 | 583 | 330 | 23 | 2 | 552 | 12 | 550 | 1.24e-59 | 208 |
MS.gene074404.t1 | MTR_8g027375 | 29.837 | 553 | 318 | 20 | 25 | 544 | 34 | 549 | 7.01e-59 | 206 |
MS.gene074404.t1 | MTR_7g065980 | 28.308 | 597 | 350 | 24 | 7 | 562 | 3 | 562 | 2.83e-54 | 193 |
MS.gene074404.t1 | MTR_8g479390 | 28.905 | 557 | 330 | 19 | 25 | 565 | 31 | 537 | 9.61e-54 | 191 |
MS.gene074404.t1 | MTR_4g019225 | 28.520 | 561 | 326 | 20 | 24 | 544 | 25 | 550 | 5.25e-53 | 190 |
MS.gene074404.t1 | MTR_7g065970 | 27.289 | 568 | 335 | 21 | 18 | 544 | 18 | 548 | 1.17e-52 | 189 |
MS.gene074404.t1 | MTR_5g018270 | 28.725 | 557 | 322 | 17 | 25 | 562 | 31 | 531 | 2.86e-49 | 179 |
MS.gene074404.t1 | MTR_3g079660 | 77.320 | 97 | 22 | 0 | 476 | 572 | 5 | 101 | 8.02e-49 | 165 |
MS.gene074404.t1 | MTR_3g083440 | 27.022 | 581 | 357 | 19 | 7 | 567 | 8 | 541 | 1.02e-48 | 178 |
MS.gene074404.t1 | MTR_3g083390 | 27.022 | 581 | 357 | 19 | 7 | 567 | 8 | 541 | 1.97e-48 | 177 |
MS.gene074404.t1 | MTR_4g101650 | 28.366 | 557 | 343 | 17 | 27 | 562 | 29 | 550 | 2.65e-48 | 177 |
MS.gene074404.t1 | MTR_3g083400 | 27.022 | 581 | 357 | 19 | 7 | 567 | 8 | 541 | 2.89e-48 | 176 |
MS.gene074404.t1 | MTR_8g479380 | 27.941 | 544 | 310 | 21 | 48 | 567 | 52 | 537 | 3.87e-48 | 176 |
MS.gene074404.t1 | MTR_3g083450 | 27.224 | 562 | 343 | 18 | 26 | 567 | 27 | 542 | 6.22e-48 | 176 |
MS.gene074404.t1 | MTR_3g083430 | 26.850 | 581 | 358 | 19 | 7 | 567 | 8 | 541 | 1.17e-47 | 175 |
MS.gene074404.t1 | MTR_4g083190 | 26.072 | 583 | 363 | 20 | 7 | 567 | 7 | 543 | 1.29e-47 | 175 |
MS.gene074404.t1 | MTR_3g083410 | 27.407 | 540 | 326 | 18 | 48 | 567 | 12 | 505 | 1.62e-46 | 171 |
MS.gene074404.t1 | MTR_4g049390 | 27.857 | 560 | 327 | 17 | 25 | 562 | 27 | 531 | 2.79e-46 | 171 |
MS.gene074404.t1 | MTR_3g008580 | 27.223 | 551 | 337 | 16 | 37 | 562 | 41 | 552 | 4.19e-46 | 171 |
MS.gene074404.t1 | MTR_1g090707 | 26.769 | 523 | 300 | 15 | 44 | 539 | 43 | 509 | 2.25e-45 | 169 |
MS.gene074404.t1 | MTR_3g115050 | 25.561 | 579 | 362 | 17 | 6 | 565 | 9 | 537 | 1.00e-44 | 166 |
MS.gene074404.t1 | MTR_4g132320 | 26.780 | 590 | 349 | 19 | 2 | 565 | 6 | 538 | 1.29e-44 | 166 |
MS.gene074404.t1 | MTR_4g048350 | 26.401 | 553 | 343 | 14 | 25 | 562 | 27 | 530 | 1.88e-44 | 166 |
MS.gene074404.t1 | MTR_4g075690 | 26.667 | 585 | 347 | 19 | 1 | 562 | 8 | 533 | 7.16e-44 | 164 |
MS.gene074404.t1 | MTR_2g088080 | 27.611 | 565 | 322 | 20 | 25 | 562 | 30 | 534 | 4.73e-43 | 162 |
MS.gene074404.t1 | MTR_4g083210 | 26.761 | 568 | 334 | 20 | 26 | 567 | 26 | 537 | 8.44e-43 | 161 |
MS.gene074404.t1 | MTR_7g051440 | 27.448 | 572 | 350 | 23 | 26 | 573 | 30 | 560 | 1.83e-42 | 161 |
MS.gene074404.t1 | MTR_1g026410 | 25.685 | 584 | 352 | 20 | 11 | 566 | 9 | 538 | 1.94e-41 | 157 |
MS.gene074404.t1 | MTR_4g075690 | 26.506 | 498 | 290 | 17 | 1 | 480 | 8 | 447 | 5.92e-34 | 134 |
MS.gene074404.t1 | MTR_2g088080 | 27.006 | 511 | 287 | 19 | 79 | 562 | 2 | 453 | 2.60e-33 | 133 |
MS.gene074404.t1 | MTR_2g009230 | 88.525 | 61 | 7 | 0 | 130 | 190 | 1 | 61 | 5.67e-33 | 121 |
MS.gene074404.t1 | MTR_5g081790 | 37.589 | 141 | 84 | 2 | 385 | 524 | 283 | 420 | 6.39e-19 | 89.7 |
MS.gene074404.t1 | MTR_5g081790 | 35.417 | 144 | 83 | 4 | 6 | 142 | 7 | 147 | 2.48e-18 | 88.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074404.t1 | AT5G21105 | 64.211 | 570 | 200 | 2 | 9 | 574 | 19 | 588 | 0.0 | 787 |
MS.gene074404.t1 | AT5G21105 | 64.615 | 520 | 180 | 2 | 9 | 524 | 19 | 538 | 0.0 | 715 |
MS.gene074404.t1 | AT5G21100 | 61.111 | 558 | 209 | 5 | 17 | 570 | 16 | 569 | 0.0 | 714 |
MS.gene074404.t1 | AT4G39830 | 49.911 | 563 | 257 | 8 | 19 | 566 | 30 | 582 | 0.0 | 576 |
MS.gene074404.t1 | AT5G21105 | 63.824 | 387 | 139 | 1 | 189 | 574 | 11 | 397 | 0.0 | 532 |
MS.gene074404.t1 | AT4G39830 | 49.697 | 495 | 224 | 8 | 87 | 566 | 3 | 487 | 3.95e-169 | 489 |
MS.gene074404.t1 | AT4G39830 | 49.595 | 494 | 224 | 8 | 88 | 566 | 2 | 485 | 3.11e-168 | 487 |
MS.gene074404.t1 | AT4G39830 | 47.475 | 495 | 222 | 9 | 87 | 566 | 3 | 474 | 2.55e-155 | 454 |
MS.gene074404.t1 | AT5G03260 | 32.620 | 561 | 324 | 18 | 7 | 544 | 6 | 535 | 1.76e-71 | 239 |
MS.gene074404.t1 | AT5G05390 | 29.879 | 579 | 335 | 18 | 1 | 544 | 1 | 543 | 1.61e-70 | 237 |
MS.gene074404.t1 | AT5G09360 | 31.524 | 571 | 329 | 19 | 1 | 544 | 12 | 547 | 7.02e-68 | 230 |
MS.gene074404.t1 | AT5G58910 | 31.341 | 552 | 313 | 19 | 24 | 544 | 29 | 545 | 3.73e-67 | 228 |
MS.gene074404.t1 | AT5G58910 | 31.341 | 552 | 312 | 20 | 24 | 544 | 29 | 544 | 9.96e-66 | 224 |
MS.gene074404.t1 | AT2G29130 | 32.281 | 570 | 328 | 19 | 1 | 540 | 6 | 547 | 2.00e-65 | 224 |
MS.gene074404.t1 | AT3G09220 | 30.195 | 563 | 333 | 19 | 12 | 544 | 13 | 545 | 3.03e-64 | 220 |
MS.gene074404.t1 | AT5G48100 | 30.496 | 564 | 326 | 18 | 14 | 544 | 11 | 541 | 3.42e-64 | 220 |
MS.gene074404.t1 | AT5G01050 | 30.070 | 572 | 325 | 21 | 10 | 544 | 13 | 546 | 5.42e-64 | 220 |
MS.gene074404.t1 | AT2G30210 | 31.066 | 544 | 298 | 19 | 40 | 544 | 43 | 548 | 5.51e-64 | 220 |
MS.gene074404.t1 | AT5G07130 | 31.250 | 576 | 335 | 19 | 1 | 544 | 1 | 547 | 2.15e-63 | 218 |
MS.gene074404.t1 | AT2G40370 | 29.508 | 610 | 346 | 22 | 1 | 559 | 1 | 577 | 2.58e-63 | 218 |
MS.gene074404.t1 | AT5G01040 | 28.873 | 568 | 335 | 16 | 10 | 544 | 13 | 544 | 2.37e-62 | 216 |
MS.gene074404.t1 | AT1G18140 | 29.725 | 582 | 333 | 20 | 20 | 559 | 24 | 571 | 2.39e-60 | 210 |
MS.gene074404.t1 | AT5G60020 | 30.172 | 580 | 334 | 21 | 1 | 540 | 3 | 551 | 5.57e-60 | 209 |
MS.gene074404.t1 | AT2G38080 | 30.728 | 563 | 333 | 20 | 8 | 544 | 5 | 536 | 8.39e-60 | 208 |
MS.gene074404.t1 | AT5G01190 | 30.185 | 540 | 331 | 15 | 24 | 544 | 24 | 536 | 3.79e-57 | 201 |
MS.gene074404.t1 | AT2G46570 | 28.468 | 555 | 329 | 20 | 22 | 544 | 29 | 547 | 7.61e-57 | 201 |
MS.gene074404.t1 | AT5G58910 | 30.224 | 536 | 301 | 20 | 40 | 544 | 8 | 501 | 7.68e-57 | 199 |
MS.gene074404.t1 | AT5G60020 | 30.314 | 541 | 308 | 19 | 40 | 540 | 8 | 519 | 3.65e-56 | 198 |
MS.gene074404.t1 | AT5G01190 | 30.443 | 519 | 315 | 15 | 45 | 544 | 31 | 522 | 1.22e-54 | 194 |
MS.gene074404.t1 | AT5G60020 | 29.610 | 564 | 326 | 21 | 1 | 524 | 3 | 535 | 5.36e-53 | 189 |
MS.gene074404.t1 | AT1G75790 | 27.627 | 590 | 348 | 21 | 4 | 562 | 1 | 542 | 3.73e-50 | 182 |
MS.gene074404.t1 | AT1G55570 | 29.004 | 562 | 324 | 21 | 26 | 562 | 30 | 541 | 7.38e-50 | 181 |
MS.gene074404.t1 | AT4G12420 | 26.418 | 564 | 355 | 17 | 27 | 567 | 27 | 553 | 2.99e-49 | 180 |
MS.gene074404.t1 | AT4G12420 | 26.418 | 564 | 355 | 17 | 27 | 567 | 27 | 553 | 2.99e-49 | 180 |
MS.gene074404.t1 | AT4G22010 | 28.090 | 534 | 311 | 16 | 25 | 540 | 26 | 504 | 1.14e-48 | 177 |
MS.gene074404.t1 | AT5G66920 | 26.975 | 519 | 317 | 14 | 25 | 532 | 37 | 504 | 2.09e-47 | 174 |
MS.gene074404.t1 | AT1G21850 | 27.022 | 581 | 350 | 19 | 4 | 562 | 3 | 531 | 1.01e-46 | 172 |
MS.gene074404.t1 | AT1G21860 | 26.876 | 573 | 342 | 18 | 16 | 565 | 16 | 534 | 1.90e-46 | 171 |
MS.gene074404.t1 | AT5G07130 | 30.372 | 484 | 282 | 16 | 91 | 544 | 4 | 462 | 7.61e-46 | 169 |
MS.gene074404.t1 | AT5G07130 | 30.372 | 484 | 282 | 16 | 91 | 544 | 4 | 462 | 7.61e-46 | 169 |
MS.gene074404.t1 | AT5G51480 | 27.660 | 564 | 348 | 21 | 27 | 567 | 30 | 556 | 6.20e-45 | 168 |
MS.gene074404.t1 | AT3G13390 | 27.936 | 562 | 330 | 21 | 26 | 562 | 29 | 540 | 8.71e-45 | 167 |
MS.gene074404.t1 | AT4G37160 | 25.269 | 558 | 348 | 17 | 27 | 566 | 33 | 539 | 1.39e-44 | 166 |
MS.gene074404.t1 | AT5G48450 | 25.945 | 582 | 367 | 17 | 9 | 567 | 8 | 548 | 5.89e-44 | 165 |
MS.gene074404.t1 | AT5G48450 | 25.945 | 582 | 367 | 17 | 9 | 567 | 8 | 548 | 9.02e-44 | 165 |
MS.gene074404.t1 | AT4G25240 | 27.211 | 588 | 366 | 19 | 4 | 567 | 7 | 556 | 1.27e-43 | 164 |
MS.gene074404.t1 | AT4G25240 | 27.211 | 588 | 366 | 19 | 4 | 567 | 7 | 556 | 1.27e-43 | 164 |
MS.gene074404.t1 | AT3G09220 | 28.992 | 476 | 279 | 18 | 99 | 544 | 2 | 448 | 1.71e-43 | 162 |
MS.gene074404.t1 | AT4G28090 | 27.692 | 585 | 340 | 21 | 9 | 565 | 9 | 538 | 1.86e-43 | 163 |
MS.gene074404.t1 | AT2G46570 | 27.733 | 494 | 290 | 19 | 83 | 544 | 4 | 462 | 5.06e-43 | 160 |
MS.gene074404.t1 | AT2G23630 | 27.338 | 556 | 330 | 21 | 27 | 562 | 32 | 533 | 5.63e-43 | 162 |
MS.gene074404.t1 | AT2G23630 | 27.338 | 556 | 330 | 21 | 27 | 562 | 37 | 538 | 6.29e-43 | 162 |
MS.gene074404.t1 | AT1G76160 | 24.915 | 586 | 360 | 18 | 5 | 565 | 4 | 534 | 4.78e-41 | 156 |
MS.gene074404.t1 | AT1G41830 | 24.408 | 549 | 344 | 15 | 7 | 539 | 11 | 504 | 6.19e-38 | 147 |
MS.gene074404.t1 | AT3G13400 | 25.540 | 556 | 350 | 17 | 26 | 562 | 28 | 538 | 7.27e-36 | 142 |
MS.gene074404.t1 | AT3G13400 | 25.540 | 556 | 350 | 17 | 26 | 562 | 28 | 538 | 7.27e-36 | 142 |
MS.gene074404.t1 | AT1G55560 | 25.225 | 555 | 347 | 20 | 29 | 562 | 30 | 537 | 5.34e-35 | 139 |
MS.gene074404.t1 | AT4G38420 | 24.382 | 566 | 351 | 20 | 25 | 565 | 30 | 543 | 1.06e-34 | 138 |
MS.gene074404.t1 | AT4G37160 | 25.268 | 467 | 286 | 15 | 27 | 480 | 33 | 449 | 1.55e-33 | 133 |
MS.gene074404.t1 | AT4G38420 | 24.206 | 504 | 310 | 18 | 25 | 508 | 30 | 481 | 5.12e-27 | 115 |
MS.gene074404.t1 | AT4G38420 | 24.370 | 476 | 289 | 17 | 25 | 480 | 30 | 454 | 4.71e-26 | 111 |
Find 143 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGAGGGTGTTCATAAAAT+TGG | 0.125745 | 3.4:+75283021 | MS.gene074404:CDS |
AAATCGGTAATTTCACTAAA+TGG | 0.144709 | 3.4:+75282518 | MS.gene074404:CDS |
TTGGACTGCATTAAGGTTTA+AGG | 0.221108 | 3.4:+75282924 | MS.gene074404:CDS |
CTCAGTTGTGGGTGTTGTTT+AGG | 0.244247 | 3.4:-75283092 | None:intergenic |
TGTCTGTGGTGTTCCCATTC+TGG | 0.244260 | 3.4:-75282449 | None:intergenic |
TATTATAGTTAAGGATTGTT+AGG | 0.255819 | 3.4:-75282330 | None:intergenic |
CTTATGGTTGGACTGCATTA+AGG | 0.292432 | 3.4:+75282917 | MS.gene074404:CDS |
GCTCCTAAGTAAGGTGTTAT+TGG | 0.293518 | 3.4:-75282568 | None:intergenic |
GTGATTGGTGGTGGTAATAT+AGG | 0.293720 | 3.4:-75282373 | None:intergenic |
ACTGCAGTTATATTTCCTTA+TGG | 0.308341 | 3.4:+75282901 | MS.gene074404:CDS |
CCGCTACCCGTTGTTGTACT+TGG | 0.311502 | 3.4:-75282682 | None:intergenic |
TGGCGCTACTTCGAGAATCT+TGG | 0.314451 | 3.4:-75281294 | None:intergenic |
AGGCAGACAACCCTGGTGTT+TGG | 0.318817 | 3.4:+75282944 | MS.gene074404:CDS |
CGATTGAGAGCCAGTAGTTT+TGG | 0.320504 | 3.4:-75282273 | None:intergenic |
GTTGTTGTACTTGGATTAAC+TGG | 0.324579 | 3.4:-75282673 | None:intergenic |
GGCAGACAACCCTGGTGTTT+GGG | 0.333727 | 3.4:+75282945 | MS.gene074404:CDS |
CAGGGTTTGTATTATAGTTA+AGG | 0.342158 | 3.4:-75282339 | None:intergenic |
GTTCACCAACCCATCTCATT+GGG | 0.342539 | 3.4:-75273829 | None:intergenic |
CTGAGGGTGTTCATAAAATT+GGG | 0.343862 | 3.4:+75283022 | MS.gene074404:CDS |
TTTGTTTGGTGTATATGGTT+AGG | 0.348547 | 3.4:+75272190 | MS.gene074404:CDS |
AATGGCTCGCTTTGGTTGTT+TGG | 0.353112 | 3.4:-75273722 | None:intergenic |
TTGTTTGGTGTATATGGTTA+GGG | 0.363068 | 3.4:+75272191 | MS.gene074404:CDS |
CACCACCAATCACTCCCTTA+TGG | 0.366354 | 3.4:+75282383 | MS.gene074404:CDS |
CATTGAACCACATTTGCATC+TGG | 0.368806 | 3.4:+75282981 | MS.gene074404:CDS |
GGAATCAATGGTCAGTTTCC+TGG | 0.370438 | 3.4:+75272307 | MS.gene074404:CDS |
TTAAATATGTCGAAATCAAA+TGG | 0.374923 | 3.4:-75282646 | None:intergenic |
TGATTGGTGGTGGTAATATA+GGG | 0.386257 | 3.4:-75282372 | None:intergenic |
TCCTTCTGTAGAGAGCTTGT+TGG | 0.390891 | 3.4:-75272377 | None:intergenic |
GGCGCTACTTCGAGAATCTT+GGG | 0.392401 | 3.4:-75281293 | None:intergenic |
CTCAACACACAAAGCAAAAT+CGG | 0.395873 | 3.4:+75282502 | MS.gene074404:CDS |
AATCGGTAATTTCACTAAAT+GGG | 0.402093 | 3.4:+75282519 | MS.gene074404:CDS |
AGGTGTTATTGGCAATGTTA+AGG | 0.403860 | 3.4:-75282557 | None:intergenic |
TATTTGATTGCTCCTAAGTA+AGG | 0.405813 | 3.4:-75282577 | None:intergenic |
TATTTCTATCATGGACACTA+TGG | 0.409360 | 3.4:+75273653 | MS.gene074404:CDS |
CTTTGAAATTGCATTGAGGC+AGG | 0.412837 | 3.4:-75281253 | None:intergenic |
TTTGTAGATTGGAACTCCTT+GGG | 0.426712 | 3.4:+75273346 | MS.gene074404:intron |
CTCTTCAGCCCCAATGAGAT+GGG | 0.429001 | 3.4:+75273820 | MS.gene074404:CDS |
AAATCAAATGGGAATCTATC+TGG | 0.430172 | 3.4:-75282634 | None:intergenic |
CTGTAATGAAAAGTTTCTCC+TGG | 0.432582 | 3.4:-75273407 | None:intergenic |
CATAATGAAATGGCTCGCTT+TGG | 0.432881 | 3.4:-75273730 | None:intergenic |
AACTCACCATCATAATGAAA+TGG | 0.432896 | 3.4:-75273740 | None:intergenic |
GGTTCACCAACCCATCTCAT+TGG | 0.433465 | 3.4:-75273830 | None:intergenic |
ATTTGACACGTGCACCTTTG+AGG | 0.440703 | 3.4:+75282875 | MS.gene074404:CDS |
CCTCAATGCAATTTCAAAGT+TGG | 0.443269 | 3.4:+75281257 | MS.gene074404:CDS |
AGCGAGCCATTTCATTATGA+TGG | 0.443509 | 3.4:+75273734 | MS.gene074404:CDS |
CAGAGAGCAGCAGGGTTGTA+TGG | 0.444015 | 3.4:+75273680 | MS.gene074404:CDS |
GATCTTGGTCCGTGTGTAGA+AGG | 0.444511 | 3.4:-75282246 | None:intergenic |
CCAACTTCAGCTCTAATAGT+TGG | 0.449801 | 3.4:-75272331 | None:intergenic |
ATTACAGATTCATTGTTGAC+AGG | 0.449902 | 3.4:+75273423 | MS.gene074404:CDS |
CAGTTATATTTCCTTATGGT+TGG | 0.450961 | 3.4:+75282905 | MS.gene074404:CDS |
TCTCTTCAGCCCCAATGAGA+TGG | 0.452079 | 3.4:+75273819 | MS.gene074404:CDS |
AAACAAATCATTTCCAGAAT+GGG | 0.453424 | 3.4:+75282436 | MS.gene074404:CDS |
ATTATAGTTAAGGATTGTTA+GGG | 0.461154 | 3.4:-75282329 | None:intergenic |
ATTGGAACTCCTTGGGCTGA+TGG | 0.463869 | 3.4:+75273353 | MS.gene074404:CDS |
GGTGTTGTTTAGGAACATCT+TGG | 0.466856 | 3.4:-75283082 | None:intergenic |
TTAAGGATTGTTAGGGCTTG+TGG | 0.473400 | 3.4:-75282322 | None:intergenic |
CCTGGTACATATTTCTATCA+TGG | 0.478578 | 3.4:+75273644 | MS.gene074404:CDS |
AAAACAAATCATTTCCAGAA+TGG | 0.478795 | 3.4:+75282435 | MS.gene074404:CDS |
CAAAACTACTGGCTCTCAAT+CGG | 0.478813 | 3.4:+75282274 | MS.gene074404:CDS |
TATGGCATGCAGAGAGCAGC+AGG | 0.482439 | 3.4:+75273671 | MS.gene074404:CDS |
CTTAATGCAGTCCAACCATA+AGG | 0.485250 | 3.4:-75282916 | None:intergenic |
GTTAATCCAAGTACAACAAC+GGG | 0.485981 | 3.4:+75282676 | MS.gene074404:CDS |
ACCACATTTGCATCTGGGAA+TGG | 0.487721 | 3.4:+75282987 | MS.gene074404:CDS |
TAAATATGTCGAAATCAAAT+GGG | 0.488708 | 3.4:-75282645 | None:intergenic |
TCTATGCTATCAACCGTGAA+TGG | 0.489752 | 3.4:-75282196 | None:intergenic |
CGCTCGAAATCGTTCCATAA+GGG | 0.490554 | 3.4:-75282397 | None:intergenic |
ACAACATGCTCTATGCAATC+TGG | 0.491472 | 3.4:-75272280 | None:intergenic |
CAACTTCAGCTCTAATAGTT+GGG | 0.494195 | 3.4:-75272330 | None:intergenic |
AATATAGGGAAAGTTGAGGC+AGG | 0.496705 | 3.4:-75282358 | None:intergenic |
GCGCTCGAAATCGTTCCATA+AGG | 0.499345 | 3.4:-75282398 | None:intergenic |
AGCTTAGCTAGTCTCAGTTG+TGG | 0.500207 | 3.4:-75283104 | None:intergenic |
TCGTTCCATAAGGGAGTGAT+TGG | 0.500888 | 3.4:-75282388 | None:intergenic |
AAACTACGTGCACCCATTCA+CGG | 0.502338 | 3.4:+75282183 | MS.gene074404:CDS |
CAATGAAATGCCCAAACACC+AGG | 0.503898 | 3.4:-75282955 | None:intergenic |
GTCCTTAGCTTCTCTCAACT+TGG | 0.508173 | 3.4:+75281352 | MS.gene074404:CDS |
TTGCCAATAACACCTTACTT+AGG | 0.510406 | 3.4:+75282565 | MS.gene074404:CDS |
GCTTAGCTAGTCTCAGTTGT+GGG | 0.510640 | 3.4:-75283103 | None:intergenic |
ACTTGCAATCCTAATTCTGT+AGG | 0.513702 | 3.4:-75281324 | None:intergenic |
CTGTAGAGAGCTTGTTGGTG+AGG | 0.522573 | 3.4:-75272372 | None:intergenic |
TGTTCACGAAATTAGCTGCT+AGG | 0.529978 | 3.4:-75281226 | None:intergenic |
CAGAAGGAACTGTTATTCAC+TGG | 0.532868 | 3.4:+75272392 | MS.gene074404:CDS |
AAGATCCCAACCAAAACTAC+TGG | 0.534040 | 3.4:+75282263 | MS.gene074404:CDS |
CCACATTTGCATCTGGGAAT+GGG | 0.538253 | 3.4:+75282988 | MS.gene074404:CDS |
ATTGAACCACATTTGCATCT+GGG | 0.538898 | 3.4:+75282982 | MS.gene074404:CDS |
CCCATTCCCAGATGCAAATG+TGG | 0.540042 | 3.4:-75282988 | None:intergenic |
TTCCATAAGGGAGTGATTGG+TGG | 0.540746 | 3.4:-75282385 | None:intergenic |
AGCTTGCTCATCAATGGAAG+AGG | 0.544734 | 3.4:+75281188 | MS.gene074404:CDS |
GGCCAAGTTGAGAGAAGCTA+AGG | 0.545213 | 3.4:-75281354 | None:intergenic |
TCTCAGTGTGCTATAAATCC+AGG | 0.546219 | 3.4:+75273389 | MS.gene074404:CDS |
GTTCATCCATGGCATTTGCA+TGG | 0.550858 | 3.4:+75282784 | MS.gene074404:CDS |
AGGTTTAAGGCAGACAACCC+TGG | 0.556431 | 3.4:+75282937 | MS.gene074404:CDS |
GGAACTGTTATTCACTGGCA+TGG | 0.556886 | 3.4:+75272397 | MS.gene074404:CDS |
TCAGCTCTAATAGTTGGGCC+AGG | 0.557489 | 3.4:-75272325 | None:intergenic |
GTTCACGAAATTAGCTGCTA+GGG | 0.560510 | 3.4:-75281225 | None:intergenic |
TTACAGATTCATTGTTGACA+GGG | 0.563984 | 3.4:+75273424 | MS.gene074404:CDS |
TCAGCCCCAATGAGATGGGT+TGG | 0.567659 | 3.4:+75273824 | MS.gene074404:CDS |
AATGGGAATCTATCTGGTGG+TGG | 0.568086 | 3.4:-75282628 | None:intergenic |
CCATGATAGAAATATGTACC+AGG | 0.570980 | 3.4:-75273644 | None:intergenic |
CTATGCTATCAACCGTGAAT+GGG | 0.572088 | 3.4:-75282195 | None:intergenic |
CCAACTATTAGAGCTGAAGT+TGG | 0.572309 | 3.4:+75272331 | MS.gene074404:CDS |
CATAAGGGAGTGATTGGTGG+TGG | 0.576952 | 3.4:-75282382 | None:intergenic |
CTTGTTGTGGTGGAAGCAGA+TGG | 0.578406 | 3.4:+75282160 | MS.gene074404:CDS |
CATGTTGTGATGGGAATCAA+TGG | 0.578474 | 3.4:+75272295 | MS.gene074404:CDS |
TTACACGTTTCACTTAAATG+AGG | 0.579316 | 3.4:+75282708 | MS.gene074404:CDS |
TTGCATAGAGCATGTTGTGA+TGG | 0.579841 | 3.4:+75272285 | MS.gene074404:CDS |
GAAACATTACAAGTTTGATG+TGG | 0.579860 | 3.4:+75272240 | MS.gene074404:CDS |
CATCTGCTTCCACCACAACA+AGG | 0.580093 | 3.4:-75282159 | None:intergenic |
ATCTCATTGGGGCTGAAGAG+AGG | 0.581211 | 3.4:-75273817 | None:intergenic |
CCAACTTTGAAATTGCATTG+AGG | 0.583711 | 3.4:-75281257 | None:intergenic |
ATCTGCTCCTCAGTGATCTG+TGG | 0.584818 | 3.4:+75273765 | MS.gene074404:CDS |
GAGATGGGTTGGTGAACCAC+AGG | 0.584866 | 3.4:+75273835 | MS.gene074404:CDS |
ATATAGGGAAAGTTGAGGCA+GGG | 0.586056 | 3.4:-75282357 | None:intergenic |
CCAAGTACAACAACGGGTAG+CGG | 0.586649 | 3.4:+75282682 | MS.gene074404:CDS |
ATAACTGCAGTGTTCCTCAA+AGG | 0.587942 | 3.4:-75282889 | None:intergenic |
TCACTGGCATGGAATCAGAC+AGG | 0.589797 | 3.4:+75272408 | MS.gene074404:CDS |
CACAAGTTCACAAGAACAAG+AGG | 0.595059 | 3.4:+75273790 | MS.gene074404:CDS |
TGCATAGAGCATGTTGTGAT+GGG | 0.595383 | 3.4:+75272286 | MS.gene074404:CDS |
ACCAACAAGCTCTCTACAGA+AGG | 0.601317 | 3.4:+75272376 | MS.gene074404:CDS |
TTTGAAATTGCATTGAGGCA+GGG | 0.606053 | 3.4:-75281252 | None:intergenic |
TCATGTCCATGCAAATGCCA+TGG | 0.613062 | 3.4:-75282790 | None:intergenic |
CCTACACATGCTCTTACTTG+TGG | 0.613192 | 3.4:+75283051 | MS.gene074404:CDS |
GAATCACACCCTTGTTGTGG+TGG | 0.615258 | 3.4:+75282150 | MS.gene074404:intron |
TTCACCAACCCATCTCATTG+GGG | 0.616416 | 3.4:-75273828 | None:intergenic |
AGTTCACAAGAACAAGAGGT+TGG | 0.621180 | 3.4:+75273794 | MS.gene074404:CDS |
ATACTAGTGAAGTTCATCCA+TGG | 0.627356 | 3.4:+75282773 | MS.gene074404:CDS |
CTACTCAGTCCTTCTACACA+CGG | 0.628943 | 3.4:+75282237 | MS.gene074404:CDS |
AGTTAATCCAAGTACAACAA+CGG | 0.640190 | 3.4:+75282675 | MS.gene074404:CDS |
GATAGCATAGACATCTACTC+AGG | 0.642343 | 3.4:+75282208 | MS.gene074404:CDS |
GCTTGCTCATCAATGGAAGA+GGG | 0.643075 | 3.4:+75281189 | MS.gene074404:CDS |
GCAGCAGTTCCATCAGCCCA+AGG | 0.643166 | 3.4:-75273362 | None:intergenic |
ATCTGCTTCCACCACAACAA+GGG | 0.647563 | 3.4:-75282158 | None:intergenic |
GTAGAATCACACCCTTGTTG+TGG | 0.648768 | 3.4:+75282147 | MS.gene074404:intron |
CGTGTGTAGAAGGACTGAGT+AGG | 0.651575 | 3.4:-75282236 | None:intergenic |
TCAAATGGGAATCTATCTGG+TGG | 0.659562 | 3.4:-75282631 | None:intergenic |
TGGTAATATAGGGAAAGTTG+AGG | 0.684103 | 3.4:-75282362 | None:intergenic |
CCACAAGTAAGAGCATGTGT+AGG | 0.697143 | 3.4:-75283051 | None:intergenic |
AATGAAATGCCCAAACACCA+GGG | 0.701200 | 3.4:-75282954 | None:intergenic |
GAAATTGCATTGAGGCAGGG+TGG | 0.703546 | 3.4:-75281249 | None:intergenic |
ATGGCATGCAGAGAGCAGCA+GGG | 0.712589 | 3.4:+75273672 | MS.gene074404:CDS |
GTTGGTGAGGTCAATGACAA+CGG | 0.719426 | 3.4:-75272359 | None:intergenic |
TGTTGAGGAGGTAAATTGTG+CGG | 0.723525 | 3.4:-75282486 | None:intergenic |
GGTGAAGGGAAATTTCAACC+AGG | 0.727102 | 3.4:+75282832 | MS.gene074404:CDS |
TTGTGTGCCACAGATCACTG+AGG | 0.796939 | 3.4:-75273772 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.4 | gene | 75272169 | 75283113 | 75272169 | ID=MS.gene074404 |
chr3.4 | mRNA | 75272169 | 75283113 | 75272169 | ID=MS.gene074404.t1;Parent=MS.gene074404 |
chr3.4 | exon | 75272169 | 75272429 | 75272169 | ID=MS.gene074404.t1.exon1;Parent=MS.gene074404.t1 |
chr3.4 | CDS | 75272169 | 75272429 | 75272169 | ID=cds.MS.gene074404.t1;Parent=MS.gene074404.t1 |
chr3.4 | exon | 75273353 | 75273445 | 75273353 | ID=MS.gene074404.t1.exon2;Parent=MS.gene074404.t1 |
chr3.4 | CDS | 75273353 | 75273445 | 75273353 | ID=cds.MS.gene074404.t1;Parent=MS.gene074404.t1 |
chr3.4 | exon | 75273644 | 75273856 | 75273644 | ID=MS.gene074404.t1.exon3;Parent=MS.gene074404.t1 |
chr3.4 | CDS | 75273644 | 75273856 | 75273644 | ID=cds.MS.gene074404.t1;Parent=MS.gene074404.t1 |
chr3.4 | exon | 75281188 | 75281382 | 75281188 | ID=MS.gene074404.t1.exon4;Parent=MS.gene074404.t1 |
chr3.4 | CDS | 75281188 | 75281382 | 75281188 | ID=cds.MS.gene074404.t1;Parent=MS.gene074404.t1 |
chr3.4 | exon | 75282151 | 75283113 | 75282151 | ID=MS.gene074404.t1.exon5;Parent=MS.gene074404.t1 |
chr3.4 | CDS | 75282151 | 75283113 | 75282151 | ID=cds.MS.gene074404.t1;Parent=MS.gene074404.t1 |
Gene Sequence |
Protein sequence |