Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031550.t1 | XP_003607683.1 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 1.20E-99 | 372.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031550.t1 | Q5ZI57 | 59.4 | 165 | 67 | 0 | 17 | 181 | 12 | 176 | 3.4e-55 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031550.t1 | B7FMN3 | 99.5 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 8.4e-100 | 372.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene92142 | MS.gene031550 | PPI |
| MS.gene031550 | MS.gene015741 | PPI |
| MS.gene031550 | MS.gene21951 | PPI |
| MS.gene031550 | MS.gene59609 | PPI |
| MS.gene031550 | MS.gene05927 | PPI |
| MS.gene031550 | MS.gene79721 | PPI |
| MS.gene031550 | MS.gene049131 | PPI |
| MS.gene031550 | MS.gene98171 | PPI |
| MS.gene031550 | MS.gene024701 | PPI |
| MS.gene031550 | MS.gene22289 | PPI |
| MS.gene031550 | MS.gene04771 | PPI |
| MS.gene21679 | MS.gene031550 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031550.t1 | MTR_4g081170 | 99.462 | 186 | 1 | 0 | 1 | 186 | 1 | 186 | 2.64e-136 | 378 |
| MS.gene031550.t1 | MTR_8g027700 | 93.548 | 186 | 12 | 0 | 1 | 186 | 1 | 186 | 9.95e-130 | 362 |
| MS.gene031550.t1 | MTR_8g027700 | 92.593 | 135 | 10 | 0 | 52 | 186 | 1 | 135 | 1.60e-91 | 263 |
| MS.gene031550.t1 | MTR_4g027400 | 82.979 | 47 | 8 | 0 | 1 | 47 | 1 | 47 | 8.62e-22 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene031550.t1 | AT5G54750 | 87.634 | 186 | 23 | 0 | 1 | 186 | 1 | 186 | 8.37e-122 | 342 |
| MS.gene031550.t1 | AT5G54750 | 81.910 | 199 | 23 | 1 | 1 | 186 | 1 | 199 | 6.78e-118 | 332 |
Find 32 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTACTTGTAGTATTATTT+TGG | 0.173251 | 4.2:-28484805 | MS.gene031550:CDS |
| TCCTTATATGGATACTCTTC+TGG | 0.287013 | 4.2:+28484074 | None:intergenic |
| TATTACTCATCATCCTTATA+TGG | 0.314204 | 4.2:+28484062 | None:intergenic |
| ATAGAAGCTTACCATATCTA+AGG | 0.368967 | 4.2:+28484692 | None:intergenic |
| TCCAGAAGAGTATCCATATA+AGG | 0.373933 | 4.2:-28484075 | MS.gene031550:CDS |
| TTACCGCATCCGTGACCAAT+TGG | 0.424789 | 4.2:-28484839 | MS.gene031550:CDS |
| TCGCCGGTTCGAGGAGCAAC+AGG | 0.444238 | 4.2:+28486557 | None:intergenic |
| TATAGACCTTGATAGTTGTC+AGG | 0.479131 | 4.2:+28484750 | None:intergenic |
| CAATGAAGGCTGAGGTCACT+TGG | 0.479280 | 4.2:-28484160 | MS.gene031550:CDS |
| ATATTAAGCGGAGTCATTAG+AGG | 0.486373 | 4.2:-28484717 | MS.gene031550:CDS |
| GCTCCTGTTGCTCCTCGAAC+CGG | 0.487837 | 4.2:-28486560 | MS.gene031550:CDS |
| CATTAGAGGAGCCTTAGATA+TGG | 0.489659 | 4.2:-28484703 | MS.gene031550:intron |
| ATCCCAATTGGTCACGGATG+CGG | 0.496672 | 4.2:+28484836 | None:intergenic |
| TACCGCATCCGTGACCAATT+GGG | 0.499246 | 4.2:-28484838 | MS.gene031550:CDS |
| TGGCTAAATCTAATGTCTCA+AGG | 0.508999 | 4.2:-28486290 | MS.gene031550:CDS |
| AGTCCCTTCAGCATCCCAAT+TGG | 0.532365 | 4.2:+28484824 | None:intergenic |
| GAGCTCTTTACTCTCACATA+TGG | 0.537014 | 4.2:-28486500 | MS.gene031550:CDS |
| GAGCTTCCTGACAACTATCA+AGG | 0.547242 | 4.2:-28484756 | MS.gene031550:CDS |
| TGGCTACGAGATGTGCTTCG+AGG | 0.557803 | 4.2:-28484140 | MS.gene031550:CDS |
| TCATACTCAGGTATCAATGA+AGG | 0.563147 | 4.2:-28484174 | MS.gene031550:intron |
| TACTACTGCAACATATTAAG+CGG | 0.569518 | 4.2:-28484729 | MS.gene031550:CDS |
| GTGACCAATTGGGATGCTGA+AGG | 0.590525 | 4.2:-28484828 | MS.gene031550:CDS |
| TTCAGCATCCCAATTGGTCA+CGG | 0.591444 | 4.2:+28484830 | None:intergenic |
| GACTGCTGATGTCATTGCAA+AGG | 0.591701 | 4.2:-28486250 | MS.gene031550:intron |
| TGACCAATTGGGATGCTGAA+GGG | 0.593955 | 4.2:-28484827 | MS.gene031550:CDS |
| AGCTCAACAAAGTCTACCAA+AGG | 0.594508 | 4.2:+28484774 | None:intergenic |
| GTTAGCAAATATCGCATCGC+CGG | 0.596718 | 4.2:+28486541 | None:intergenic |
| TAACATCGAACGCGTTAATG+CGG | 0.607582 | 4.2:-28486522 | MS.gene031550:CDS |
| TCAGGTATCAATGAAGGCTG+AGG | 0.608851 | 4.2:-28484168 | MS.gene031550:intron |
| AATATCGCATCGCCGGTTCG+AGG | 0.625890 | 4.2:+28486548 | None:intergenic |
| ATTGCTTACAGATCTCGAAG+AGG | 0.675299 | 4.2:-28486462 | MS.gene031550:CDS |
| TCACGGATGCGGTAACACCG+AGG | 0.770702 | 4.2:+28484847 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTTCAGTATCTAATAAT+TGG | - | chr4.2:28485563-28485582 | MS.gene031550:intron | 15.0% |
| !! | TTTATAATATTATATCGTCT+TGG | - | chr4.2:28485447-28485466 | MS.gene031550:intron | 15.0% |
| !! | AATTAACACATACGAATTTA+GGG | + | chr4.2:28485491-28485510 | None:intergenic | 20.0% |
| !! | ATGATAAAAAGCTATCATTA+TGG | - | chr4.2:28485244-28485263 | MS.gene031550:intron | 20.0% |
| !! | TAATTAACACATACGAATTT+AGG | + | chr4.2:28485492-28485511 | None:intergenic | 20.0% |
| !! | TGAAAATCCATAATGTAATT+GGG | - | chr4.2:28486276-28486295 | MS.gene031550:CDS | 20.0% |
| !! | TTGAAAATCCATAATGTAAT+TGG | - | chr4.2:28486275-28486294 | MS.gene031550:CDS | 20.0% |
| !!! | AAACCAGAATAATTTAGTTT+CGG | + | chr4.2:28485183-28485202 | None:intergenic | 20.0% |
| ! | AATGAAAATGCCAATATATG+TGG | + | chr4.2:28485004-28485023 | None:intergenic | 25.0% |
| ! | CGTAAAAAAACAAAAAATGC+TGG | + | chr4.2:28485661-28485680 | None:intergenic | 25.0% |
| ! | CTCAATTTCTGTTTGTATTT+CGG | - | chr4.2:28484227-28484246 | MS.gene031550:intron | 25.0% |
| ! | CTTTCATTAAGAATGATGTT+TGG | - | chr4.2:28485359-28485378 | MS.gene031550:intron | 25.0% |
| ! | TCAAACATATATAAAGCAGA+AGG | - | chr4.2:28485700-28485719 | MS.gene031550:intron | 25.0% |
| ! | TCTTTAAATCAAGACATAGA+AGG | - | chr4.2:28484534-28484553 | MS.gene031550:intron | 25.0% |
| ! | TGATTAAAAAACTGGTGAAT+GGG | + | chr4.2:28485998-28486017 | None:intergenic | 25.0% |
| ! | TGCTTTCAGAAAATAAAGAA+CGG | + | chr4.2:28486206-28486225 | None:intergenic | 25.0% |
| ! | TTGGTATGATATTTACAAGA+CGG | - | chr4.2:28485607-28485626 | MS.gene031550:intron | 25.0% |
| !! | AACCAGAATAATTTAGTTTC+GGG | + | chr4.2:28485182-28485201 | None:intergenic | 25.0% |
| !! | AGATTACTCATGATTTTGTA+TGG | - | chr4.2:28486106-28486125 | MS.gene031550:intron | 25.0% |
| !! | GACTACTTGTAGTATTATTT+TGG | - | chr4.2:28485822-28485841 | MS.gene031550:intron | 25.0% |
| !! | TTGTTTTCCCAATTACATTA+TGG | + | chr4.2:28486286-28486305 | None:intergenic | 25.0% |
| !!! | ATATCTAAGTCGCATTTTTT+TGG | + | chr4.2:28485303-28485322 | None:intergenic | 25.0% |
| !!! | ATCATAGTTATTTTTCCTAG+AGG | - | chr4.2:28486318-28486337 | MS.gene031550:CDS | 25.0% |
| !!! | ATTTTCAGGGGTTATAATAT+TGG | - | chr4.2:28484291-28484310 | MS.gene031550:intron | 25.0% |
| !!! | TACTTGTAGTATTATTTTGG+AGG | - | chr4.2:28485825-28485844 | MS.gene031550:intron | 25.0% |
| AAATTAGCAGAATCAATGGA+TGG | - | chr4.2:28484499-28484518 | MS.gene031550:intron | 30.0% | |
| AATTGTTCGTTTATACAGGT+TGG | - | chr4.2:28485745-28485764 | MS.gene031550:intron | 30.0% | |
| ACATCTTTCATTGCTAAGAA+AGG | + | chr4.2:28486244-28486263 | None:intergenic | 30.0% | |
| AGAAGAGCTGATTAAAAAAC+TGG | + | chr4.2:28486006-28486025 | None:intergenic | 30.0% | |
| AGATGAACAAGTATGTTTGT+AGG | - | chr4.2:28484898-28484917 | MS.gene031550:intron | 30.0% | |
| AGGAAAATTAGCAGAATCAA+TGG | - | chr4.2:28484495-28484514 | MS.gene031550:intron | 30.0% | |
| ATAGAAGCTTACCATATCTA+AGG | + | chr4.2:28485938-28485957 | None:intergenic | 30.0% | |
| ATCTTTCATTGCTAAGAAAG+GGG | + | chr4.2:28486242-28486261 | None:intergenic | 30.0% | |
| ATGTTTACTGAGCATTATGT+TGG | + | chr4.2:28485210-28485229 | None:intergenic | 30.0% | |
| ATTAGACTAAGATGCAATAG+AGG | - | chr4.2:28484970-28484989 | MS.gene031550:intron | 30.0% | |
| ATTCTTCTACATTCATACTC+AGG | - | chr4.2:28486441-28486460 | MS.gene031550:CDS | 30.0% | |
| CAAAAGCTTAGTGTCAATAA+TGG | - | chr4.2:28484471-28484490 | MS.gene031550:intron | 30.0% | |
| CATACTTGTTCATCTGAATT+TGG | + | chr4.2:28484893-28484912 | None:intergenic | 30.0% | |
| CATCTTTCATTGCTAAGAAA+GGG | + | chr4.2:28486243-28486262 | None:intergenic | 30.0% | |
| CCAAAAACTCATCAATCAAA+CGG | + | chr4.2:28484320-28484339 | None:intergenic | 30.0% | |
| CCTGTATAAACGAACAATTA+AGG | + | chr4.2:28485744-28485763 | None:intergenic | 30.0% | |
| CCTTAATTGTTCGTTTATAC+AGG | - | chr4.2:28485741-28485760 | MS.gene031550:intron | 30.0% | |
| CTGATTAAAAAACTGGTGAA+TGG | + | chr4.2:28485999-28486018 | None:intergenic | 30.0% | |
| TACTACTGCAACATATTAAG+CGG | - | chr4.2:28485898-28485917 | MS.gene031550:intron | 30.0% | |
| TGAAAAGTGAAGACATACTT+TGG | + | chr4.2:28485418-28485437 | None:intergenic | 30.0% | |
| TGCTTTGCATTCATTCAAAT+CGG | - | chr4.2:28485048-28485067 | MS.gene031550:intron | 30.0% | |
| TGTTTACTGAGCATTATGTT+GGG | + | chr4.2:28485209-28485228 | None:intergenic | 30.0% | |
| TTAGACTAAGATGCAATAGA+GGG | - | chr4.2:28484971-28484990 | MS.gene031550:intron | 30.0% | |
| TTCCCGAAACTAAATTATTC+TGG | - | chr4.2:28485177-28485196 | MS.gene031550:intron | 30.0% | |
| TTGTATGGTTTATCGTTGTT+TGG | - | chr4.2:28486121-28486140 | MS.gene031550:intron | 30.0% | |
| !! | TATTTTGGAGGATAATCCTT+TGG | - | chr4.2:28485837-28485856 | MS.gene031550:intron | 30.0% |
| !!! | GTTGGTTTTAAAATGTTCCT+CGG | - | chr4.2:28485763-28485782 | MS.gene031550:intron | 30.0% |
| AAAATGCCAATATATGTGGC+AGG | + | chr4.2:28485000-28485019 | None:intergenic | 35.0% | |
| AACAATGATGAAATGCAGTC+TGG | - | chr4.2:28485111-28485130 | MS.gene031550:intron | 35.0% | |
| ACACTCAAATTTCAGAAGAC+TGG | + | chr4.2:28486069-28486088 | None:intergenic | 35.0% | |
| ACTTTAGACAATGGGAATCA+TGG | - | chr4.2:28484660-28484679 | MS.gene031550:intron | 35.0% | |
| AGCAACTACAAACTCATAAG+AGG | + | chr4.2:28485032-28485051 | None:intergenic | 35.0% | |
| ATATTAAGCGGAGTCATTAG+AGG | - | chr4.2:28485910-28485929 | MS.gene031550:intron | 35.0% | |
| ATGTGTATCAGTAAGAAGGA+GGG | - | chr4.2:28484785-28484804 | MS.gene031550:CDS | 35.0% | |
| CCGAACAGTAAAATTCAGAT+CGG | + | chr4.2:28484266-28484285 | None:intergenic | 35.0% | |
| CTTTAGACAATGGGAATCAT+GGG | - | chr4.2:28484661-28484680 | MS.gene031550:intron | 35.0% | |
| GAAGAAGGACTTTAGACAAT+GGG | - | chr4.2:28484652-28484671 | MS.gene031550:intron | 35.0% | |
| GGTTTATCGTTGTTTGGAAA+GGG | - | chr4.2:28486127-28486146 | MS.gene031550:intron | 35.0% | |
| TAGACTAAGATGCAATAGAG+GGG | - | chr4.2:28484972-28484991 | MS.gene031550:intron | 35.0% | |
| TCATACTCAGGTATCAATGA+AGG | - | chr4.2:28486453-28486472 | MS.gene031550:CDS | 35.0% | |
| TCCTTATATGGATACTCTTC+TGG | + | chr4.2:28486556-28486575 | None:intergenic | 35.0% | |
| TGAAGAAGGACTTTAGACAA+TGG | - | chr4.2:28484651-28484670 | MS.gene031550:intron | 35.0% | |
| TGATATTCACCTTCAGAACA+TGG | - | chr4.2:28484719-28484738 | MS.gene031550:CDS | 35.0% | |
| TGGCTAAATCTAATGTCTCA+AGG | - | chr4.2:28484337-28484356 | MS.gene031550:intron | 35.0% | |
| TGGTTTATCGTTGTTTGGAA+AGG | - | chr4.2:28486126-28486145 | MS.gene031550:intron | 35.0% | |
| TGTGATGTGTATCAGTAAGA+AGG | - | chr4.2:28484781-28484800 | MS.gene031550:CDS | 35.0% | |
| ! | AGCTTAGTGTCAATAATGGA+AGG | - | chr4.2:28484475-28484494 | MS.gene031550:intron | 35.0% |
| ! | CACTAAGCTTTTGTTCACAA+TGG | + | chr4.2:28484464-28484483 | None:intergenic | 35.0% |
| ! | CCGATCTGAATTTTACTGTT+CGG | - | chr4.2:28484263-28484282 | MS.gene031550:intron | 35.0% |
| ! | CCGTTTGATTGATGAGTTTT+TGG | - | chr4.2:28484317-28484336 | MS.gene031550:intron | 35.0% |
| ! | TATAGACCTTGATAGTTGTC+AGG | + | chr4.2:28485880-28485899 | None:intergenic | 35.0% |
| !! | ACTGTTCGGTTTGTATTTTC+AGG | - | chr4.2:28484277-28484296 | MS.gene031550:intron | 35.0% |
| !! | CTGTTCGGTTTGTATTTTCA+GGG | - | chr4.2:28484278-28484297 | MS.gene031550:intron | 35.0% |
| !! | CTTTTGTTTCACGTTGTAGT+TGG | - | chr4.2:28485523-28485542 | MS.gene031550:intron | 35.0% |
| !! | TCCAGAAGAGTATCCATATA+AGG | - | chr4.2:28486552-28486571 | MS.gene031550:CDS | 35.0% |
| !! | TGTTCGGTTTGTATTTTCAG+GGG | - | chr4.2:28484279-28484298 | MS.gene031550:intron | 35.0% |
| !!! | CTAAGTCGCATTTTTTTGGA+CGG | + | chr4.2:28485299-28485318 | None:intergenic | 35.0% |
| AAAACCAAGTAGCAGCACAT+AGG | + | chr4.2:28485634-28485653 | None:intergenic | 40.0% | |
| AAGTTGAAAACAAACCGACC+AGG | + | chr4.2:28484689-28484708 | None:intergenic | 40.0% | |
| ACATGACATGCAATGTGGAT+CGG | - | chr4.2:28486349-28486368 | MS.gene031550:intron | 40.0% | |
| AGCTCAACAAAGTCTACCAA+AGG | + | chr4.2:28485856-28485875 | None:intergenic | 40.0% | |
| AGTAAGAAGGAGGGATTAGA+AGG | - | chr4.2:28484794-28484813 | MS.gene031550:CDS | 40.0% | |
| ATGTGACATGACATGCAATG+TGG | - | chr4.2:28486344-28486363 | MS.gene031550:intron | 40.0% | |
| ATTGCTTACAGATCTCGAAG+AGG | - | chr4.2:28484165-28484184 | MS.gene031550:CDS | 40.0% | |
| CAGAACATGGTGAATGTTCA+AGG | - | chr4.2:28484732-28484751 | MS.gene031550:CDS | 40.0% | |
| CATTAGAGGAGCCTTAGATA+TGG | - | chr4.2:28485924-28485943 | MS.gene031550:intron | 40.0% | |
| CCTAGCCTAACAAACTATCA+GGG | + | chr4.2:28484760-28484779 | None:intergenic | 40.0% | |
| CCTTCTCTATTGAGAGAGTT+GGG | - | chr4.2:28484822-28484841 | MS.gene031550:CDS | 40.0% | |
| GAACATTCACCATGTTCTGA+AGG | + | chr4.2:28484731-28484750 | None:intergenic | 40.0% | |
| GAAGACATACTTTGGACTTG+TGG | + | chr4.2:28485410-28485429 | None:intergenic | 40.0% | |
| GACTGTGAACACATTCTGAT+TGG | - | chr4.2:28485588-28485607 | MS.gene031550:intron | 40.0% | |
| GACTTGTGGCAAGATTAGAA+AGG | + | chr4.2:28485396-28485415 | None:intergenic | 40.0% | |
| GAGCTCTTTACTCTCACATA+TGG | - | chr4.2:28484127-28484146 | MS.gene031550:CDS | 40.0% | |
| GATGTGTATCAGTAAGAAGG+AGG | - | chr4.2:28484784-28484803 | MS.gene031550:CDS | 40.0% | |
| TAACATCGAACGCGTTAATG+CGG | - | chr4.2:28484105-28484124 | MS.gene031550:CDS | 40.0% | |
| TCAAGACATAGAAGGAGATG+AGG | - | chr4.2:28484542-28484561 | MS.gene031550:intron | 40.0% | |
| TCCTTCTCTATTGAGAGAGT+TGG | - | chr4.2:28484821-28484840 | MS.gene031550:CDS | 40.0% | |
| TCGGCAAAATGTGTTTGACT+TGG | - | chr4.2:28485067-28485086 | MS.gene031550:intron | 40.0% | |
| TTTCATTGCTAAGAAAGGGG+AGG | + | chr4.2:28486239-28486258 | None:intergenic | 40.0% | |
| ! | CGGCAAAATGTGTTTGACTT+GGG | - | chr4.2:28485068-28485087 | MS.gene031550:intron | 40.0% |
| ! | GTCATGTCACATTTTCCTCT+AGG | + | chr4.2:28486336-28486355 | None:intergenic | 40.0% |
| !! | AGGTACCCTGATAGTTTGTT+AGG | - | chr4.2:28484752-28484771 | MS.gene031550:CDS | 40.0% |
| !! | CAAAATGTGTTTGACTTGGG+GGG | - | chr4.2:28485071-28485090 | MS.gene031550:intron | 40.0% |
| !! | GCAAAATGTGTTTGACTTGG+GGG | - | chr4.2:28485070-28485089 | MS.gene031550:intron | 40.0% |
| !! | GGCAAAATGTGTTTGACTTG+GGG | - | chr4.2:28485069-28485088 | MS.gene031550:intron | 40.0% |
| AGATAAGCCACTGCAGAGTT+TGG | - | chr4.2:28484581-28484600 | MS.gene031550:intron | 45.0% | |
| CATGACATGCAATGTGGATC+GGG | - | chr4.2:28486350-28486369 | MS.gene031550:intron | 45.0% | |
| CCCAACTCTCTCAATAGAGA+AGG | + | chr4.2:28484825-28484844 | None:intergenic | 45.0% | |
| CTACATCTCCACATGCCTAA+AGG | + | chr4.2:28484849-28484868 | None:intergenic | 45.0% | |
| GACTGCTGATGTCATTGCAA+AGG | - | chr4.2:28484377-28484396 | MS.gene031550:intron | 45.0% | |
| GAGCTTCCTGACAACTATCA+AGG | - | chr4.2:28485871-28485890 | MS.gene031550:intron | 45.0% | |
| GCCTAGCCTAACAAACTATC+AGG | + | chr4.2:28484761-28484780 | None:intergenic | 45.0% | |
| GTTAGCAAATATCGCATCGC+CGG | + | chr4.2:28484089-28484108 | None:intergenic | 45.0% | |
| TCAGGTATCAATGAAGGCTG+AGG | - | chr4.2:28486459-28486478 | MS.gene031550:CDS | 45.0% | |
| TCGTCTTGGCTCATTGTTGT+TGG | - | chr4.2:28485461-28485480 | MS.gene031550:intron | 45.0% | |
| TGACCAATTGGGATGCTGAA+GGG | - | chr4.2:28485800-28485819 | MS.gene031550:intron | 45.0% | |
| TTCAGCATCCCAATTGGTCA+CGG | + | chr4.2:28485800-28485819 | None:intergenic | 45.0% | |
| TTGAGAGAGTTGGGACCTTT+AGG | - | chr4.2:28484831-28484850 | MS.gene031550:CDS | 45.0% | |
| !! | CCCTGATAGTTTGTTAGGCT+AGG | - | chr4.2:28484757-28484776 | MS.gene031550:CDS | 45.0% |
| AGTCCCTTCAGCATCCCAAT+TGG | + | chr4.2:28485806-28485825 | None:intergenic | 50.0% | |
| AGTTGGGACCTTTAGGCATG+TGG | - | chr4.2:28484838-28484857 | MS.gene031550:CDS | 50.0% | |
| ATCCCAATTGGTCACGGATG+CGG | + | chr4.2:28485794-28485813 | None:intergenic | 50.0% | |
| CAATGAAGGCTGAGGTCACT+TGG | - | chr4.2:28486467-28486486 | MS.gene031550:CDS | 50.0% | |
| CAATGGGAATCATGGGATCC+TGG | - | chr4.2:28484668-28484687 | MS.gene031550:intron | 50.0% | |
| GTGACCAATTGGGATGCTGA+AGG | - | chr4.2:28485799-28485818 | MS.gene031550:intron | 50.0% | |
| TACCGCATCCGTGACCAATT+GGG | - | chr4.2:28485789-28485808 | MS.gene031550:intron | 50.0% | |
| TCCTTCTTCACCTTCTCCAG+CGG | + | chr4.2:28484641-28484660 | None:intergenic | 50.0% | |
| TGCAGAGTTTGGCAGCAGAA+GGG | - | chr4.2:28484592-28484611 | MS.gene031550:intron | 50.0% | |
| TTACCGCATCCGTGACCAAT+TGG | - | chr4.2:28485788-28485807 | MS.gene031550:intron | 50.0% | |
| ACCGCTGGAGAAGGTGAAGA+AGG | - | chr4.2:28484637-28484656 | MS.gene031550:intron | 55.0% | |
| CTGCAGAGTTTGGCAGCAGA+AGG | - | chr4.2:28484591-28484610 | MS.gene031550:intron | 55.0% | |
| GGGAATCATGGGATCCTGGT+CGG | - | chr4.2:28484672-28484691 | MS.gene031550:intron | 55.0% | |
| TACTCTGCAATCGACACCGC+TGG | - | chr4.2:28484622-28484641 | MS.gene031550:intron | 55.0% | |
| TCTGCTGCCAAACTCTGCAG+TGG | + | chr4.2:28484591-28484610 | None:intergenic | 55.0% | |
| TGGCTACGAGATGTGCTTCG+AGG | - | chr4.2:28486487-28486506 | MS.gene031550:CDS | 55.0% | |
| ! | CGGACCTATGTGCTGCTACT+TGG | - | chr4.2:28485627-28485646 | MS.gene031550:intron | 55.0% |
| ! | GGGGCACCTGCCACATATAT+TGG | - | chr4.2:28484991-28485010 | MS.gene031550:intron | 55.0% |
| !! | AATATCGCATCGCCGGTTCG+AGG | + | chr4.2:28484082-28484101 | None:intergenic | 55.0% |
| GCAATCGACACCGCTGGAGA+AGG | - | chr4.2:28484628-28484647 | MS.gene031550:intron | 60.0% | |
| GCTCCTGTTGCTCCTCGAAC+CGG | - | chr4.2:28484067-28484086 | MS.gene031550:CDS | 60.0% | |
| TCACGGATGCGGTAACACCG+AGG | + | chr4.2:28485783-28485802 | None:intergenic | 60.0% | |
| !! | TCGCCGGTTCGAGGAGCAAC+AGG | + | chr4.2:28484073-28484092 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 28484064 | 28486585 | 28484064 | ID=MS.gene031550 |
| chr4.2 | mRNA | 28484064 | 28486585 | 28484064 | ID=MS.gene031550.t1;Parent=MS.gene031550 |
| chr4.2 | exon | 28486431 | 28486585 | 28486431 | ID=MS.gene031550.t1.exon1;Parent=MS.gene031550.t1 |
| chr4.2 | CDS | 28486431 | 28486585 | 28486431 | ID=cds.MS.gene031550.t1;Parent=MS.gene031550.t1 |
| chr4.2 | exon | 28486251 | 28486350 | 28486251 | ID=MS.gene031550.t1.exon2;Parent=MS.gene031550.t1 |
| chr4.2 | CDS | 28486251 | 28486350 | 28486251 | ID=cds.MS.gene031550.t1;Parent=MS.gene031550.t1 |
| chr4.2 | exon | 28484704 | 28484886 | 28484704 | ID=MS.gene031550.t1.exon3;Parent=MS.gene031550.t1 |
| chr4.2 | CDS | 28484704 | 28484886 | 28484704 | ID=cds.MS.gene031550.t1;Parent=MS.gene031550.t1 |
| chr4.2 | exon | 28484064 | 28484186 | 28484064 | ID=MS.gene031550.t1.exon4;Parent=MS.gene031550.t1 |
| chr4.2 | CDS | 28484064 | 28484186 | 28484064 | ID=cds.MS.gene031550.t1;Parent=MS.gene031550.t1 |
| Gene Sequence |
| Protein sequence |
