Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032337.t1 | AFK33917.1 | 93.6 | 202 | 11 | 1 | 1 | 200 | 1 | 202 | 3.20E-100 | 374.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032337.t1 | Q9SYL9 | 64.5 | 211 | 56 | 4 | 1 | 200 | 1 | 203 | 3.5e-63 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032337.t1 | I3S0X5 | 93.6 | 202 | 11 | 1 | 1 | 200 | 1 | 202 | 2.3e-100 | 374.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032337 | MS.gene001687 | PPI |
| MS.gene032337 | MS.gene005865 | PPI |
| MS.gene032337 | MS.gene026968 | PPI |
| MS.gene032337 | MS.gene60861 | PPI |
| MS.gene032337 | MS.gene028903 | PPI |
| MS.gene31468 | MS.gene032337 | PPI |
| MS.gene032337 | MS.gene60589 | PPI |
| MS.gene032337 | MS.gene055808 | PPI |
| MS.gene032337 | MS.gene82915 | PPI |
| MS.gene032337 | MS.gene043435 | PPI |
| MS.gene34167 | MS.gene032337 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032337.t1 | MTR_8g054450 | 95.545 | 202 | 7 | 1 | 1 | 200 | 1 | 202 | 1.66e-110 | 318 |
| MS.gene032337.t1 | MTR_8g054450 | 84.049 | 163 | 24 | 1 | 1 | 161 | 1 | 163 | 1.91e-65 | 202 |
| MS.gene032337.t1 | MTR_3g082760 | 42.268 | 97 | 56 | 0 | 102 | 198 | 26 | 122 | 1.71e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032337.t1 | AT1G78630 | 82.979 | 141 | 22 | 1 | 60 | 200 | 65 | 203 | 4.46e-82 | 246 |
| MS.gene032337.t1 | AT3G01790 | 37.500 | 96 | 60 | 0 | 102 | 197 | 32 | 127 | 9.49e-16 | 73.2 |
| MS.gene032337.t1 | AT3G01790 | 37.500 | 96 | 60 | 0 | 102 | 197 | 32 | 127 | 5.05e-15 | 72.0 |
| MS.gene032337.t1 | AT3G01790 | 37.500 | 96 | 60 | 0 | 102 | 197 | 32 | 127 | 5.05e-15 | 72.0 |
Find 72 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGTTCAATAATTCTTTC+AGG | 0.233109 | 8.2:+48397873 | None:intergenic |
| GATAATGAAAGGTTTGAAAA+TGG | 0.249766 | 8.2:+48400165 | None:intergenic |
| TTGACATGATCCGAAGCTTT+TGG | 0.279177 | 8.2:+48399472 | None:intergenic |
| AGTGCCGCCGATAAAGCTTC+TGG | 0.285755 | 8.2:+48397952 | None:intergenic |
| GATGCTACAGATAAAATTCT+TGG | 0.293196 | 8.2:-48399424 | MS.gene032337:CDS |
| GTTGAACTTACCCTCCCTTT+TGG | 0.329004 | 8.2:+48397834 | None:intergenic |
| GAACCTGAGCCCCGCTTTCA+AGG | 0.332396 | 8.2:-48400054 | MS.gene032337:CDS |
| AGTAATGATTGCAGGACATT+TGG | 0.339663 | 8.2:-48399510 | MS.gene032337:intron |
| CAGGAATTCTGTTCTGCAGC+TGG | 0.358647 | 8.2:+48397892 | None:intergenic |
| TGAAGACAAAGTCTACTTTC+AGG | 0.370528 | 8.2:+48397542 | None:intergenic |
| AGAGGACCCAGAAGCTTTAT+CGG | 0.394368 | 8.2:-48397959 | MS.gene032337:CDS |
| AAGGTTGGCGTCGAAAGGTT+TGG | 0.406724 | 8.2:+48397412 | None:intergenic |
| ATAATGAAAGGTTTGAAAAT+GGG | 0.418527 | 8.2:+48400166 | None:intergenic |
| GGGCCTTGAAAGCGGGGCTC+AGG | 0.450923 | 8.2:+48400051 | None:intergenic |
| TGGGAATTGAGAAGCAAGAA+AGG | 0.456506 | 8.2:+48400185 | None:intergenic |
| TCTGTAGATAAATGCAGAAA+AGG | 0.458587 | 8.2:-48398000 | MS.gene032337:intron |
| TCATCCATTCACCTTGTTGT+CGG | 0.460019 | 8.2:-48397437 | MS.gene032337:CDS |
| TTATACCGGGCCTTGAAAGC+GGG | 0.474696 | 8.2:+48400044 | None:intergenic |
| ATTATTGAACATGCTGTTCG+TGG | 0.477565 | 8.2:-48397864 | MS.gene032337:CDS |
| GTTCGTGGCATGCTTCCAAA+AGG | 0.478146 | 8.2:-48397849 | MS.gene032337:CDS |
| GTGCCGCCGATAAAGCTTCT+GGG | 0.487074 | 8.2:+48397953 | None:intergenic |
| TTTCATTGTCCATTCTCAGC+AGG | 0.495956 | 8.2:-48400118 | MS.gene032337:CDS |
| AGGACATTTGGAACACAACC+TGG | 0.498468 | 8.2:-48399498 | MS.gene032337:CDS |
| CGGCGGCACTCAGGTCGACC+TGG | 0.501166 | 8.2:-48397939 | MS.gene032337:CDS |
| ACTAGTGGGTTGAATGGTGG+TGG | 0.502438 | 8.2:-48397481 | MS.gene032337:CDS |
| TGAGCCCCGCTTTCAAGGCC+CGG | 0.505387 | 8.2:-48400049 | MS.gene032337:intron |
| ACGAGGATCTTCTTCGACAA+TGG | 0.505973 | 8.2:+48400089 | None:intergenic |
| TGAGAGAATGAAGAAGATGA+AGG | 0.506757 | 8.2:+48400234 | None:intergenic |
| ACCAAGCTTGAATCTACTAG+TGG | 0.512391 | 8.2:-48397496 | MS.gene032337:CDS |
| AAAGTAGACTTTGTCTTCAC+CGG | 0.521688 | 8.2:-48397538 | MS.gene032337:CDS |
| AAGCTTTATCGGCGGCACTC+AGG | 0.528770 | 8.2:-48397948 | MS.gene032337:CDS |
| TGGAAGTGTCCTGCTGAGAA+TGG | 0.538194 | 8.2:+48400109 | None:intergenic |
| ATTCAAGCTTGGTAGTAGAA+AGG | 0.538978 | 8.2:+48397506 | None:intergenic |
| GGAGCCGACAACAAGGTGAA+TGG | 0.539971 | 8.2:+48397433 | None:intergenic |
| AACCTGGTATCCAAAAGCTT+CGG | 0.541687 | 8.2:-48399482 | MS.gene032337:CDS |
| CATGGGTGCATTTGTAATTG+TGG | 0.546463 | 8.2:-48399332 | MS.gene032337:intron |
| GCAGAAAAGGTTGCTGTCAG+TGG | 0.548150 | 8.2:-48397987 | MS.gene032337:CDS |
| TTGAAGAAGATGATAATGAA+AGG | 0.554980 | 8.2:+48400154 | None:intergenic |
| GTAGAAAGGTTGGCGTCGAA+AGG | 0.555001 | 8.2:+48397407 | None:intergenic |
| GAGAGAATGAAGAAGATGAA+GGG | 0.556314 | 8.2:+48400235 | None:intergenic |
| GAATCTACTAGTGGGTTGAA+TGG | 0.556333 | 8.2:-48397487 | MS.gene032337:CDS |
| CTAGTGGGTTGAATGGTGGT+GGG | 0.561714 | 8.2:-48397480 | MS.gene032337:CDS |
| GGGCATCAAAGTAGAAAGGT+TGG | 0.561929 | 8.2:+48397397 | None:intergenic |
| CGGAGGGCATCAAAGTAGAA+AGG | 0.564414 | 8.2:+48397393 | None:intergenic |
| CAGAAAAGGTTGCTGTCAGT+GGG | 0.568241 | 8.2:-48397986 | MS.gene032337:CDS |
| CCCACTAGTAGATTCAAGCT+TGG | 0.580036 | 8.2:+48397495 | None:intergenic |
| AATGCACCCATGTCCACACT+AGG | 0.592790 | 8.2:+48399343 | None:intergenic |
| GATGAAGGGAACGTCACTGA+TGG | 0.593477 | 8.2:+48400249 | None:intergenic |
| TTCGTGGCATGCTTCCAAAA+GGG | 0.595250 | 8.2:-48397848 | MS.gene032337:CDS |
| GTTATACCGGGCCTTGAAAG+CGG | 0.599322 | 8.2:+48400043 | None:intergenic |
| GTCTCGACTGTCATACCACC+AGG | 0.617174 | 8.2:+48397921 | None:intergenic |
| TATACCGGGCCTTGAAAGCG+GGG | 0.621350 | 8.2:+48400045 | None:intergenic |
| TGATGGTGAACCACACAGCA+AGG | 0.624881 | 8.2:+48400266 | None:intergenic |
| GTGGCATGCTTCCAAAAGGG+AGG | 0.631240 | 8.2:-48397845 | MS.gene032337:CDS |
| TGAGAATGGACAATGAAAGA+TGG | 0.639431 | 8.2:+48400123 | None:intergenic |
| AGTGACTTATACACCTAGTG+TGG | 0.642570 | 8.2:-48399356 | MS.gene032337:CDS |
| TGAATGGATGAGTCTTGAGA+AGG | 0.643980 | 8.2:+48397449 | None:intergenic |
| TGGCATGCTTCCAAAAGGGA+GGG | 0.645169 | 8.2:-48397844 | MS.gene032337:intron |
| CCAAGCTTGAATCTACTAGT+GGG | 0.645392 | 8.2:-48397495 | MS.gene032337:CDS |
| TTATACACCTAGTGTGGACA+TGG | 0.648097 | 8.2:-48399350 | MS.gene032337:CDS |
| CAATTGCGAATCACATCCGA+GGG | 0.651937 | 8.2:-48399387 | MS.gene032337:CDS |
| ACAATTGCGAATCACATCCG+AGG | 0.652462 | 8.2:-48399388 | MS.gene032337:CDS |
| AAGGTTTGGAGCCGACAACA+AGG | 0.664963 | 8.2:+48397426 | None:intergenic |
| TCTACTAGTGGGTTGAATGG+TGG | 0.666008 | 8.2:-48397484 | MS.gene032337:CDS |
| AGTAGAAAGGAAAGGAACAC+CGG | 0.671073 | 8.2:+48397519 | None:intergenic |
| GCAACAATGTCCTTGCTGTG+TGG | 0.677674 | 8.2:-48400276 | None:intergenic |
| ATGTCAATACAGCGAAAACG+TGG | 0.689193 | 8.2:-48399456 | MS.gene032337:CDS |
| CGGCACTCAGGTCGACCTGG+TGG | 0.696042 | 8.2:-48397936 | MS.gene032337:CDS |
| GGACCCAGAAGCTTTATCGG+CGG | 0.709633 | 8.2:-48397956 | MS.gene032337:CDS |
| AGCTTGGTAGTAGAAAGGAA+AGG | 0.714708 | 8.2:+48397511 | None:intergenic |
| TATACACCTAGTGTGGACAT+GGG | 0.714930 | 8.2:-48399349 | MS.gene032337:CDS |
| GGTTCAACACAGATGAAACG+AGG | 0.749686 | 8.2:+48400072 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTAAAATATCAATAG+AGG | - | chr8.2:48399476-48399495 | MS.gene032337:CDS | 15.0% |
| !! | AAGTTTATTTATTATGCATT+TGG | - | chr8.2:48399388-48399407 | MS.gene032337:CDS | 15.0% |
| !! | AATCTATAAAATGTAAAAAG+CGG | + | chr8.2:48399362-48399381 | None:intergenic | 15.0% |
| !! | ATAATTGAAGTAAATTAACA+TGG | + | chr8.2:48397924-48397943 | None:intergenic | 15.0% |
| !!! | AAACTGGAAATATAATTTTA+TGG | - | chr8.2:48397809-48397828 | MS.gene032337:intron | 15.0% |
| !!! | AATTTTCTTGTTTTAATTTC+TGG | - | chr8.2:48397722-48397741 | MS.gene032337:intron | 15.0% |
| !!! | AATTTTCTTTTGGTTTAAAA+TGG | - | chr8.2:48398486-48398505 | MS.gene032337:intron | 15.0% |
| !!! | ATTTTCTTGTTTTAATTTCT+GGG | - | chr8.2:48397723-48397742 | MS.gene032337:intron | 15.0% |
| !!! | TATTTTATTTGGAAAAAAGA+TGG | - | chr8.2:48398720-48398739 | MS.gene032337:intron | 15.0% |
| !!! | TATTTTTAAAGCTTTTAACT+TGG | - | chr8.2:48398092-48398111 | MS.gene032337:intron | 15.0% |
| !!! | TGATATTTTAGTTTTTTTTG+TGG | + | chr8.2:48399472-48399491 | None:intergenic | 15.0% |
| !!! | TGGTTTTGAATTTTAATTAT+AGG | - | chr8.2:48399408-48399427 | MS.gene032337:CDS | 15.0% |
| !! | AAAAACTGAAAGGAAAAAAT+TGG | + | chr8.2:48398007-48398026 | None:intergenic | 20.0% |
| !! | AAGTAGATATTAGAATTACA+AGG | + | chr8.2:48399036-48399055 | None:intergenic | 20.0% |
| !! | AATGATGATAACAATTTGAA+GGG | + | chr8.2:48398686-48398705 | None:intergenic | 20.0% |
| !! | ATAATGAAAGGTTTGAAAAT+GGG | + | chr8.2:48397509-48397528 | None:intergenic | 20.0% |
| !! | ATGTAACATTATTATAGCAA+AGG | + | chr8.2:48399122-48399141 | None:intergenic | 20.0% |
| !! | CTGAAATAATTAGAGAAATA+AGG | + | chr8.2:48398907-48398926 | None:intergenic | 20.0% |
| !! | TCGATTTAATATATTTGAAG+CGG | - | chr8.2:48398126-48398145 | MS.gene032337:intron | 20.0% |
| !! | TGTAACATTATTATAGCAAA+GGG | + | chr8.2:48399121-48399140 | None:intergenic | 20.0% |
| !! | TGTAGTTATAAATAAGAAGA+CGG | + | chr8.2:48398871-48398890 | None:intergenic | 20.0% |
| !!! | ATAGAAACTGGTATTTTATT+TGG | - | chr8.2:48398709-48398728 | MS.gene032337:intron | 20.0% |
| !!! | TAGTTTTTTTTGTGGAAAAT+TGG | + | chr8.2:48399464-48399483 | None:intergenic | 20.0% |
| !!! | TCCTTTCAGTTTTTATTTTT+TGG | - | chr8.2:48398013-48398032 | MS.gene032337:intron | 20.0% |
| !!! | TTCTTATTTATAACTACAGT+TGG | - | chr8.2:48398873-48398892 | MS.gene032337:intron | 20.0% |
| !!! | TTTTTAATTGAACATCTTTC+TGG | - | chr8.2:48398461-48398480 | MS.gene032337:intron | 20.0% |
| ! | AAACAAAATCTCCTACAAAA+TGG | - | chr8.2:48399499-48399518 | MS.gene032337:CDS | 25.0% |
| ! | AAACCAGAAAGAAGATAATA+AGG | + | chr8.2:48397843-48397862 | None:intergenic | 25.0% |
| ! | ACTAATGAGATACAAAATGT+AGG | + | chr8.2:48397948-48397967 | None:intergenic | 25.0% |
| ! | ATATAGAAGTGAAGAATGAA+AGG | - | chr8.2:48400017-48400036 | MS.gene032337:intron | 25.0% |
| ! | CATTAATGACTATGTTTATG+AGG | - | chr8.2:48399550-48399569 | MS.gene032337:intron | 25.0% |
| ! | CTGCATAAATTATTTGCAAT+TGG | - | chr8.2:48398372-48398391 | MS.gene032337:intron | 25.0% |
| ! | GAATGATGATAACAATTTGA+AGG | + | chr8.2:48398687-48398706 | None:intergenic | 25.0% |
| ! | GATAATGAAAGGTTTGAAAA+TGG | + | chr8.2:48397510-48397529 | None:intergenic | 25.0% |
| ! | GCCAAAAAATAAAAACTGAA+AGG | + | chr8.2:48398017-48398036 | None:intergenic | 25.0% |
| ! | GGAACTTATGAAATATATGA+TGG | - | chr8.2:48398511-48398530 | MS.gene032337:intron | 25.0% |
| ! | GTAGTTATAAATAAGAAGAC+GGG | + | chr8.2:48398870-48398889 | None:intergenic | 25.0% |
| ! | GTTACATTGACAAAGAAATT+TGG | - | chr8.2:48399135-48399154 | MS.gene032337:intron | 25.0% |
| ! | TAAATTATTTGCAATTGGCA+TGG | - | chr8.2:48398377-48398396 | MS.gene032337:intron | 25.0% |
| ! | TACTGTAAAACATACATCAA+GGG | - | chr8.2:48398770-48398789 | MS.gene032337:intron | 25.0% |
| ! | TATTCAAAACTTCAAATGTC+AGG | - | chr8.2:48398827-48398846 | MS.gene032337:intron | 25.0% |
| ! | TTACTGTAAAACATACATCA+AGG | - | chr8.2:48398769-48398788 | MS.gene032337:intron | 25.0% |
| ! | TTATCATGAAAGAATGAAAC+TGG | - | chr8.2:48397793-48397812 | MS.gene032337:intron | 25.0% |
| !! | AAACAATACAACCATTTTGT+AGG | + | chr8.2:48399513-48399532 | None:intergenic | 25.0% |
| !! | AATCATTACTCTTTTCAGTT+AGG | + | chr8.2:48398152-48398171 | None:intergenic | 25.0% |
| !! | ATTGCTTTAAATCTTTACGT+CGG | - | chr8.2:48398053-48398072 | MS.gene032337:intron | 25.0% |
| !! | TAATTAGCTTGGAAATGTAT+AGG | - | chr8.2:48397969-48397988 | MS.gene032337:CDS | 25.0% |
| !! | TCTCATTAGTTTAATTAGCT+TGG | - | chr8.2:48397958-48397977 | MS.gene032337:CDS | 25.0% |
| !! | TTGAAGAAGATGATAATGAA+AGG | + | chr8.2:48397521-48397540 | None:intergenic | 25.0% |
| !!! | ACCAAAGAAGTTTTTTGAAA+CGG | - | chr8.2:48398572-48398591 | MS.gene032337:intron | 25.0% |
| !!! | CATGTTTTTTCGATCATAAT+GGG | - | chr8.2:48399285-48399304 | MS.gene032337:intron | 25.0% |
| !!! | CTCTCTCTTTTTTTGTTAAT+GGG | - | chr8.2:48397654-48397673 | MS.gene032337:intron | 25.0% |
| !!! | CTTGGACTATTATTTTAACT+GGG | - | chr8.2:48399647-48399666 | MS.gene032337:intron | 25.0% |
| !!! | CTTTCTGGTTAATTTTCTTT+TGG | - | chr8.2:48398476-48398495 | MS.gene032337:intron | 25.0% |
| !!! | TACACGTTTTTGGTTTTAAA+GGG | - | chr8.2:48400069-48400088 | MS.gene032337:CDS | 25.0% |
| !!! | TCATGTTTTTTCGATCATAA+TGG | - | chr8.2:48399284-48399303 | MS.gene032337:intron | 25.0% |
| !!! | TCTCTCTCTTTTTTTGTTAA+TGG | - | chr8.2:48397653-48397672 | MS.gene032337:intron | 25.0% |
| !!! | TCTTGGACTATTATTTTAAC+TGG | - | chr8.2:48399646-48399665 | MS.gene032337:intron | 25.0% |
| !!! | TTCTTTTGGTTTAAAATGGA+TGG | - | chr8.2:48398490-48398509 | MS.gene032337:intron | 25.0% |
| !!! | TTGGACTATTATTTTAACTG+GGG | - | chr8.2:48399648-48399667 | MS.gene032337:intron | 25.0% |
| AAAAGAGAGAGAAGTTATAC+CGG | + | chr8.2:48397645-48397664 | None:intergenic | 30.0% | |
| AGATTCATTTCCATAACTGA+TGG | - | chr8.2:48399990-48400009 | MS.gene032337:intron | 30.0% | |
| ATCATCATTCTGATAGAAAC+TGG | - | chr8.2:48398697-48398716 | MS.gene032337:intron | 30.0% | |
| CAATTACGAGAAATGAATAC+TGG | + | chr8.2:48397881-48397900 | None:intergenic | 30.0% | |
| CTATATTCTTCCATCAGTTA+TGG | + | chr8.2:48400003-48400022 | None:intergenic | 30.0% | |
| GATGCTACAGATAAAATTCT+TGG | - | chr8.2:48398248-48398267 | MS.gene032337:intron | 30.0% | |
| GCATGTTCAATAATTCTTTC+AGG | + | chr8.2:48399802-48399821 | None:intergenic | 30.0% | |
| TAAAACAGTAACTCTCCAAA+AGG | + | chr8.2:48399007-48399026 | None:intergenic | 30.0% | |
| TCATAAAGCAATCGTGAAAA+CGG | + | chr8.2:48399624-48399643 | None:intergenic | 30.0% | |
| TCCGTTTCAAAAAACTTCTT+TGG | + | chr8.2:48398576-48398595 | None:intergenic | 30.0% | |
| TCTGTAGATAAATGCAGAAA+AGG | - | chr8.2:48399672-48399691 | MS.gene032337:intron | 30.0% | |
| ! | TGAGACTTTTCTATTCCATA+TGG | + | chr8.2:48397762-48397781 | None:intergenic | 30.0% |
| !! | AAGCCTTATTATCTTCTTTC+TGG | - | chr8.2:48397837-48397856 | MS.gene032337:intron | 30.0% |
| !! | ATTTTAGCCTTTCCTTTTTG+TGG | - | chr8.2:48398621-48398640 | MS.gene032337:intron | 30.0% |
| !! | CGTTAAGAGTACTAGTATTT+AGG | + | chr8.2:48399074-48399093 | None:intergenic | 30.0% |
| !!! | CATGGAAATGCTGTTTTTTA+TGG | - | chr8.2:48398395-48398414 | MS.gene032337:intron | 30.0% |
| !!! | GTACACGTTTTTGGTTTTAA+AGG | - | chr8.2:48400068-48400087 | MS.gene032337:CDS | 30.0% |
| !!! | GTTTTTTGAAACGGACATAT+AGG | - | chr8.2:48398581-48398600 | MS.gene032337:intron | 30.0% |
| AAAGAGAGAGAAGTTATACC+GGG | + | chr8.2:48397644-48397663 | None:intergenic | 35.0% | |
| AAAGTAGACTTTGTCTTCAC+CGG | - | chr8.2:48400134-48400153 | MS.gene032337:CDS | 35.0% | |
| ACGATTGCTTTATGAAGTCT+TGG | - | chr8.2:48399629-48399648 | MS.gene032337:intron | 35.0% | |
| ACTCTCCAAAAGGATAATAG+AGG | + | chr8.2:48398997-48399016 | None:intergenic | 35.0% | |
| AGAGGAGTAGGTATAAAAAC+AGG | + | chr8.2:48398979-48398998 | None:intergenic | 35.0% | |
| AGCATAAAACTTCGTGAGAA+GGG | + | chr8.2:48399580-48399599 | None:intergenic | 35.0% | |
| AGTAATCGAACTTCCCAAAT+AGG | + | chr8.2:48398754-48398773 | None:intergenic | 35.0% | |
| AGTAATGATTGCAGGACATT+TGG | - | chr8.2:48398162-48398181 | MS.gene032337:intron | 35.0% | |
| AGTAGGTATAAAAACAGGGA+AGG | + | chr8.2:48398974-48398993 | None:intergenic | 35.0% | |
| ATACTAGTACTCTTAACGAG+TGG | - | chr8.2:48399076-48399095 | MS.gene032337:intron | 35.0% | |
| ATTATTGAACATGCTGTTCG+TGG | - | chr8.2:48399808-48399827 | MS.gene032337:intron | 35.0% | |
| CAAAAGGATAATAGAGGAGT+AGG | + | chr8.2:48398991-48399010 | None:intergenic | 35.0% | |
| CATGATGACTTACCACAAAA+AGG | + | chr8.2:48398636-48398655 | None:intergenic | 35.0% | |
| CTGAAAAGAGTAATGATTGC+AGG | - | chr8.2:48398154-48398173 | MS.gene032337:intron | 35.0% | |
| GAGAGAATGAAGAAGATGAA+GGG | + | chr8.2:48397440-48397459 | None:intergenic | 35.0% | |
| GAGGAGTAGGTATAAAAACA+GGG | + | chr8.2:48398978-48398997 | None:intergenic | 35.0% | |
| GAGTACTAGTATTTAGGAAG+AGG | + | chr8.2:48399068-48399087 | None:intergenic | 35.0% | |
| GTAATCGAACTTCCCAAATA+GGG | + | chr8.2:48398753-48398772 | None:intergenic | 35.0% | |
| GTACAGTAGACATGTTAAGA+TGG | - | chr8.2:48399888-48399907 | MS.gene032337:intron | 35.0% | |
| GTAGGTATAAAAACAGGGAA+GGG | + | chr8.2:48398973-48398992 | None:intergenic | 35.0% | |
| TAGCATAAAACTTCGTGAGA+AGG | + | chr8.2:48399581-48399600 | None:intergenic | 35.0% | |
| TGAAGACAAAGTCTACTTTC+AGG | + | chr8.2:48400133-48400152 | None:intergenic | 35.0% | |
| TGACTTACCACAAAAAGGAA+AGG | + | chr8.2:48398631-48398650 | None:intergenic | 35.0% | |
| TGAGAATGGACAATGAAAGA+TGG | + | chr8.2:48397552-48397571 | None:intergenic | 35.0% | |
| TGAGAGAATGAAGAAGATGA+AGG | + | chr8.2:48397441-48397460 | None:intergenic | 35.0% | |
| TGTGGTAAGTCATCATGAAA+TGG | - | chr8.2:48398639-48398658 | MS.gene032337:intron | 35.0% | |
| ! | AAGTCACTAGATTTTTCCCT+CGG | + | chr8.2:48398304-48398323 | None:intergenic | 35.0% |
| ! | ATTCAAGCTTGGTAGTAGAA+AGG | + | chr8.2:48400169-48400188 | None:intergenic | 35.0% |
| ! | CTACTCCTCTATTATCCTTT+TGG | - | chr8.2:48398989-48399008 | MS.gene032337:intron | 35.0% |
| ! | TGGACTGTTTTGTAAGTAGA+AGG | - | chr8.2:48398531-48398550 | MS.gene032337:intron | 35.0% |
| !! | TTCTCACGAAGTTTTATGCT+AGG | - | chr8.2:48399580-48399599 | MS.gene032337:intron | 35.0% |
| !!! | AGTACACCTTTTGGTTTCAA+AGG | - | chr8.2:48400103-48400122 | MS.gene032337:CDS | 35.0% |
| !!! | GAAGTTTTGAATAAGTGCTG+AGG | + | chr8.2:48398820-48398839 | None:intergenic | 35.0% |
| !!! | GTACACCTTTTGGTTTCAAA+GGG | - | chr8.2:48400104-48400123 | MS.gene032337:CDS | 35.0% |
| AAATAAGAAGACGGGTCAAG+TGG | + | chr8.2:48398862-48398881 | None:intergenic | 40.0% | |
| AACCAAAAACGTGTACTCTC+AGG | + | chr8.2:48400064-48400083 | None:intergenic | 40.0% | |
| AACCTGGTATCCAAAAGCTT+CGG | - | chr8.2:48398190-48398209 | MS.gene032337:intron | 40.0% | |
| ACAACGGACGGTATATTACA+AGG | + | chr8.2:48398937-48398956 | None:intergenic | 40.0% | |
| ACCAAGCTTGAATCTACTAG+TGG | - | chr8.2:48400176-48400195 | MS.gene032337:CDS | 40.0% | |
| AGATGGAGATAAGCCCTATT+TGG | - | chr8.2:48398737-48398756 | MS.gene032337:intron | 40.0% | |
| AGTAGAAAGGAAAGGAACAC+CGG | + | chr8.2:48400156-48400175 | None:intergenic | 40.0% | |
| AGTGACTTATACACCTAGTG+TGG | - | chr8.2:48398316-48398335 | MS.gene032337:intron | 40.0% | |
| ATGTCAATACAGCGAAAACG+TGG | - | chr8.2:48398216-48398235 | MS.gene032337:intron | 40.0% | |
| CATGGGTGCATTTGTAATTG+TGG | - | chr8.2:48398340-48398359 | MS.gene032337:intron | 40.0% | |
| CCAAGCTTGAATCTACTAGT+GGG | - | chr8.2:48400177-48400196 | MS.gene032337:CDS | 40.0% | |
| GATGGAGATAAGCCCTATTT+GGG | - | chr8.2:48398738-48398757 | MS.gene032337:intron | 40.0% | |
| GGGAGTTAACAACTGTACAA+CGG | + | chr8.2:48398953-48398972 | None:intergenic | 40.0% | |
| GGTCTCTGTAATCTACCATA+TGG | - | chr8.2:48397744-48397763 | MS.gene032337:intron | 40.0% | |
| GTATTTAGGAAGAGGAAGAG+CGG | + | chr8.2:48399060-48399079 | None:intergenic | 40.0% | |
| GTTAACAACTGTACAACGGA+CGG | + | chr8.2:48398949-48398968 | None:intergenic | 40.0% | |
| TATACACCTAGTGTGGACAT+GGG | - | chr8.2:48398323-48398342 | MS.gene032337:intron | 40.0% | |
| TGAATGGATGAGTCTTGAGA+AGG | + | chr8.2:48400226-48400245 | None:intergenic | 40.0% | |
| TGGGAATTGAGAAGCAAGAA+AGG | + | chr8.2:48397490-48397509 | None:intergenic | 40.0% | |
| TGTCTACTGTACAAGTCTCT+TGG | + | chr8.2:48399880-48399899 | None:intergenic | 40.0% | |
| TTATACACCTAGTGTGGACA+TGG | - | chr8.2:48398322-48398341 | MS.gene032337:intron | 40.0% | |
| TTTCATTGTCCATTCTCAGC+AGG | - | chr8.2:48397554-48397573 | MS.gene032337:intron | 40.0% | |
| ! | ACCAAAAGGTGTACTCTCTA+AGG | + | chr8.2:48400098-48400117 | None:intergenic | 40.0% |
| ! | AGCTTGGTAGTAGAAAGGAA+AGG | + | chr8.2:48400164-48400183 | None:intergenic | 40.0% |
| ! | CAGCTTCATCAAGACTTTTC+AGG | + | chr8.2:48399235-48399254 | None:intergenic | 40.0% |
| ! | CCAAAAGGTGTACTCTCTAA+GGG | + | chr8.2:48400097-48400116 | None:intergenic | 40.0% |
| ! | TCATCCATTCACCTTGTTGT+CGG | - | chr8.2:48400235-48400254 | MS.gene032337:CDS | 40.0% |
| ! | TTGACATGATCCGAAGCTTT+TGG | + | chr8.2:48398203-48398222 | None:intergenic | 40.0% |
| !! | GAATCTACTAGTGGGTTGAA+TGG | - | chr8.2:48400185-48400204 | MS.gene032337:CDS | 40.0% |
| ACAATTGCGAATCACATCCG+AGG | - | chr8.2:48398284-48398303 | MS.gene032337:intron | 45.0% | |
| ACGAGGATCTTCTTCGACAA+TGG | + | chr8.2:48397586-48397605 | None:intergenic | 45.0% | |
| ATGCGTCTCCTTATACCCAA+AGG | - | chr8.2:48398794-48398813 | MS.gene032337:intron | 45.0% | |
| CAATTGCGAATCACATCCGA+GGG | - | chr8.2:48398285-48398304 | MS.gene032337:intron | 45.0% | |
| CAGAAAAGGTTGCTGTCAGT+GGG | - | chr8.2:48399686-48399705 | MS.gene032337:intron | 45.0% | |
| CCCACTAGTAGATTCAAGCT+TGG | + | chr8.2:48400180-48400199 | None:intergenic | 45.0% | |
| GGTTCAACACAGATGAAACG+AGG | + | chr8.2:48397603-48397622 | None:intergenic | 45.0% | |
| GTCATCATGAAATGGCGTAG+AGG | - | chr8.2:48398647-48398666 | MS.gene032337:intron | 45.0% | |
| TTCGTGGCATGCTTCCAAAA+GGG | - | chr8.2:48399824-48399843 | MS.gene032337:intron | 45.0% | |
| TTGCTGTCAGTGGGAAAAAG+AGG | - | chr8.2:48399695-48399714 | MS.gene032337:intron | 45.0% | |
| ! | AGAGGACCCAGAAGCTTTAT+CGG | - | chr8.2:48399713-48399732 | MS.gene032337:intron | 45.0% |
| ! | AGGACATTTGGAACACAACC+TGG | - | chr8.2:48398174-48398193 | MS.gene032337:intron | 45.0% |
| ! | ATCCGAAGCTTTTGGATACC+AGG | + | chr8.2:48398195-48398214 | None:intergenic | 45.0% |
| ! | GTTGAACTTACCCTCCCTTT+TGG | + | chr8.2:48399841-48399860 | None:intergenic | 45.0% |
| !! | CCCTTAGAGAGTACACCTTT+TGG | - | chr8.2:48400094-48400113 | MS.gene032337:CDS | 45.0% |
| !! | GAATAAGTGCTGAGGCCTTT+GGG | + | chr8.2:48398812-48398831 | None:intergenic | 45.0% |
| !! | GGCATCCCTTTGAAACCAAA+AGG | + | chr8.2:48400112-48400131 | None:intergenic | 45.0% |
| !! | TCTACTAGTGGGTTGAATGG+TGG | - | chr8.2:48400188-48400207 | MS.gene032337:CDS | 45.0% |
| !! | TGAATAAGTGCTGAGGCCTT+TGG | + | chr8.2:48398813-48398832 | None:intergenic | 45.0% |
| !! | TGCCTGAGAGTACACGTTTT+TGG | - | chr8.2:48400059-48400078 | MS.gene032337:CDS | 45.0% |
| AATGCACCCATGTCCACACT+AGG | + | chr8.2:48398332-48398351 | None:intergenic | 50.0% | |
| CAGGAATTCTGTTCTGCAGC+TGG | + | chr8.2:48399783-48399802 | None:intergenic | 50.0% | |
| GATGAAGGGAACGTCACTGA+TGG | + | chr8.2:48397426-48397445 | None:intergenic | 50.0% | |
| GCAGAAAAGGTTGCTGTCAG+TGG | - | chr8.2:48399685-48399704 | MS.gene032337:intron | 50.0% | |
| GTTATACCGGGCCTTGAAAG+CGG | + | chr8.2:48397632-48397651 | None:intergenic | 50.0% | |
| GTTCGTGGCATGCTTCCAAA+AGG | - | chr8.2:48399823-48399842 | MS.gene032337:intron | 50.0% | |
| TGCTGAGGCCTTTGGGTATA+AGG | + | chr8.2:48398805-48398824 | None:intergenic | 50.0% | |
| TGGCATGCTTCCAAAAGGGA+GGG | - | chr8.2:48399828-48399847 | MS.gene032337:intron | 50.0% | |
| TTATACCGGGCCTTGAAAGC+GGG | + | chr8.2:48397631-48397650 | None:intergenic | 50.0% | |
| ! | AAGGTTGGCGTCGAAAGGTT+TGG | + | chr8.2:48400263-48400282 | None:intergenic | 50.0% |
| ! | AAGGTTTGGAGCCGACAACA+AGG | + | chr8.2:48400249-48400268 | None:intergenic | 50.0% |
| ! | GTAGAAAGGTTGGCGTCGAA+AGG | + | chr8.2:48400268-48400287 | None:intergenic | 50.0% |
| ! | TGATGGTGAACCACACAGCA+AGG | + | chr8.2:48397409-48397428 | None:intergenic | 50.0% |
| !! | ACTAGTGGGTTGAATGGTGG+TGG | - | chr8.2:48400191-48400210 | MS.gene032337:CDS | 50.0% |
| !! | CTAGTGGGTTGAATGGTGGT+GGG | - | chr8.2:48400192-48400211 | MS.gene032337:CDS | 50.0% |
| !! | TGGAAGTGTCCTGCTGAGAA+TGG | + | chr8.2:48397566-48397585 | None:intergenic | 50.0% |
| AGTGCCGCCGATAAAGCTTC+TGG | + | chr8.2:48399723-48399742 | None:intergenic | 55.0% | |
| GGAGCCGACAACAAGGTGAA+TGG | + | chr8.2:48400242-48400261 | None:intergenic | 55.0% | |
| GTCTCGACTGTCATACCACC+AGG | + | chr8.2:48399754-48399773 | None:intergenic | 55.0% | |
| GTGCCGCCGATAAAGCTTCT+GGG | + | chr8.2:48399722-48399741 | None:intergenic | 55.0% | |
| GTGGCATGCTTCCAAAAGGG+AGG | - | chr8.2:48399827-48399846 | MS.gene032337:intron | 55.0% | |
| TATACCGGGCCTTGAAAGCG+GGG | + | chr8.2:48397630-48397649 | None:intergenic | 55.0% | |
| ! | AAGCTTTATCGGCGGCACTC+AGG | - | chr8.2:48399724-48399743 | MS.gene032337:intron | 55.0% |
| ! | GGACCCAGAAGCTTTATCGG+CGG | - | chr8.2:48399716-48399735 | MS.gene032337:intron | 55.0% |
| GAACCTGAGCCCCGCTTTCA+AGG | - | chr8.2:48397618-48397637 | MS.gene032337:intron | 60.0% | |
| TGAGCCCCGCTTTCAAGGCC+CGG | - | chr8.2:48397623-48397642 | MS.gene032337:intron | 65.0% | |
| CGGCACTCAGGTCGACCTGG+TGG | - | chr8.2:48399736-48399755 | MS.gene032337:intron | 70.0% | |
| GGGCCTTGAAAGCGGGGCTC+AGG | + | chr8.2:48397624-48397643 | None:intergenic | 70.0% | |
| CGGCGGCACTCAGGTCGACC+TGG | - | chr8.2:48399733-48399752 | MS.gene032337:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 48397402 | 48400292 | 48397402 | ID=MS.gene032337 |
| chr8.2 | mRNA | 48397402 | 48400292 | 48397402 | ID=MS.gene032337.t1;Parent=MS.gene032337 |
| chr8.2 | exon | 48400050 | 48400292 | 48400050 | ID=MS.gene032337.t1.exon1;Parent=MS.gene032337.t1 |
| chr8.2 | CDS | 48400050 | 48400292 | 48400050 | ID=cds.MS.gene032337.t1;Parent=MS.gene032337.t1 |
| chr8.2 | exon | 48399333 | 48399518 | 48399333 | ID=MS.gene032337.t1.exon2;Parent=MS.gene032337.t1 |
| chr8.2 | CDS | 48399333 | 48399518 | 48399333 | ID=cds.MS.gene032337.t1;Parent=MS.gene032337.t1 |
| chr8.2 | exon | 48397845 | 48398015 | 48397845 | ID=MS.gene032337.t1.exon3;Parent=MS.gene032337.t1 |
| chr8.2 | CDS | 48397845 | 48398015 | 48397845 | ID=cds.MS.gene032337.t1;Parent=MS.gene032337.t1 |
| chr8.2 | exon | 48397402 | 48397569 | 48397402 | ID=MS.gene032337.t1.exon4;Parent=MS.gene032337.t1 |
| chr8.2 | CDS | 48397402 | 48397569 | 48397402 | ID=cds.MS.gene032337.t1;Parent=MS.gene032337.t1 |
| Gene Sequence |
| Protein sequence |
