Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026968.t1 | XP_003618278.1 | 95.2 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 2.40E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026968.t1 | Q9LRN8 | 62.7 | 324 | 91 | 4 | 1 | 294 | 1 | 324 | 1.2e-107 | 391.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026968.t1 | G7KIQ6 | 95.2 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 1.7e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026968.t1 | MTR_6g006970 | 95.238 | 294 | 14 | 0 | 1 | 294 | 1 | 294 | 0.0 | 581 |
| MS.gene026968.t1 | MTR_1g093060 | 92.517 | 294 | 22 | 0 | 1 | 294 | 54 | 347 | 0.0 | 571 |
| MS.gene026968.t1 | MTR_2g090370 | 95.192 | 104 | 5 | 0 | 189 | 292 | 1 | 104 | 1.85e-69 | 216 |
| MS.gene026968.t1 | MTR_3g118210 | 40.580 | 207 | 117 | 6 | 49 | 251 | 58 | 262 | 3.42e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene026968.t1 | AT3G17465 | 65.123 | 324 | 83 | 4 | 1 | 294 | 1 | 324 | 3.46e-145 | 411 |
| MS.gene026968.t1 | AT2G43030 | 38.647 | 207 | 121 | 6 | 49 | 251 | 57 | 261 | 9.64e-38 | 135 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTCCGATTTCTATTCTT+TGG | 0.167396 | 6.2:-2265394 | MS.gene026968:CDS |
| TGACTGCACATTGGGATAAA+TGG | 0.170253 | 6.2:-2265424 | MS.gene026968:CDS |
| TGGAGATGTTGATCCATTTA+TGG | 0.231728 | 6.2:-2253316 | MS.gene026968:CDS |
| CTTTAATCAACAACCATAAA+TGG | 0.251126 | 6.2:+2253303 | None:intergenic |
| AAACCTTTGATTGCTGATCT+TGG | 0.325072 | 6.2:-2253336 | MS.gene026968:CDS |
| ACCCACATCAAATTTCTTGC+AGG | 0.337634 | 6.2:+2253968 | None:intergenic |
| AATTCCGATTTCTATTCTTT+GGG | 0.348660 | 6.2:-2265393 | MS.gene026968:CDS |
| TCATCAGTATCTTCATCTTC+TGG | 0.356008 | 6.2:+2253363 | None:intergenic |
| GCCCTAAAATGACCCACTTC+AGG | 0.379527 | 6.2:+2255157 | None:intergenic |
| AGACCAGTTCGTCGTGAATT+CGG | 0.379951 | 6.2:+2265467 | None:intergenic |
| GATTGGTTGTGGACAGAAGA+AGG | 0.380825 | 6.2:-2255197 | MS.gene026968:CDS |
| GTTCGGATGTGGAGACTATA+CGG | 0.382445 | 6.2:-2265520 | MS.gene026968:CDS |
| TATACTGGCCGGGAACAAAA+TGG | 0.397207 | 6.2:+2255047 | None:intergenic |
| GAACAATAACCTTCCTTCTC+TGG | 0.412164 | 6.2:+2265338 | None:intergenic |
| TGCTTCCCACCCATTCTCCC+TGG | 0.421120 | 6.2:+2254028 | None:intergenic |
| AGGAATGCTTGGTCCTTGTA+AGG | 0.424571 | 6.2:-2254238 | MS.gene026968:intron |
| TTTGAATTCCCGTGGGATGC+TGG | 0.425628 | 6.2:+2254285 | None:intergenic |
| GACTGCACATTGGGATAAAT+GGG | 0.426456 | 6.2:-2265423 | MS.gene026968:CDS |
| TCTTCTGGTACAAAGTAAGT+TGG | 0.426798 | 6.2:+2253378 | None:intergenic |
| ACAAAGTTCCCTGTAGCTCC+TGG | 0.431609 | 6.2:+2253453 | None:intergenic |
| ACACCGAATTCACGACGAAC+TGG | 0.433955 | 6.2:-2265470 | MS.gene026968:CDS |
| ACGCAGGTCCCAGGAGCTAC+AGG | 0.453068 | 6.2:-2253462 | MS.gene026968:intron |
| ATGTGGAATGACTGCACATT+GGG | 0.466335 | 6.2:-2265432 | MS.gene026968:CDS |
| CATAAAACCATGGGATCTAC+AGG | 0.470091 | 6.2:-2254258 | MS.gene026968:CDS |
| CCTCGGTCACTCGAAACTCT+TGG | 0.474118 | 6.2:+2255107 | None:intergenic |
| TCAACCCAAAGAATAGAAAT+CGG | 0.483179 | 6.2:+2265389 | None:intergenic |
| CTTCTGGTACAAAGTAAGTT+GGG | 0.488539 | 6.2:+2253379 | None:intergenic |
| GGACTCCAACGAACCTTACA+AGG | 0.498612 | 6.2:+2254225 | None:intergenic |
| ACAGGAATCACTAAAGGAAA+AGG | 0.499985 | 6.2:-2255016 | MS.gene026968:CDS |
| AAATCGTGGCAGCGGTGCCA+CGG | 0.503916 | 6.2:+2265547 | None:intergenic |
| ACATTAAGCGATGTACCAAC+AGG | 0.508189 | 6.2:+2255073 | None:intergenic |
| GGAAGGTTATTGTTCTCTCC+AGG | 0.513728 | 6.2:-2265330 | MS.gene026968:intron |
| ATGTGCACAACGCAGGTCCC+AGG | 0.516631 | 6.2:-2253471 | MS.gene026968:intron |
| AATCGTGGCAGCGGTGCCAC+GGG | 0.518214 | 6.2:+2265548 | None:intergenic |
| TCTTGGAGCTTCCTCTTCAT+CGG | 0.518555 | 6.2:+2255124 | None:intergenic |
| CTCAAGGAGTTCCGATGAAG+AGG | 0.527266 | 6.2:-2255135 | MS.gene026968:CDS |
| TTCCTGTGATGTCAATATAC+TGG | 0.527980 | 6.2:+2255032 | None:intergenic |
| TTTGATGTGGGTGAAAGGCC+AGG | 0.528326 | 6.2:-2253957 | MS.gene026968:intron |
| GAATTCGGTGTCATCACGCT+AGG | 0.535765 | 6.2:+2265482 | None:intergenic |
| ATGGGATCTACAGGAATGCT+TGG | 0.536160 | 6.2:-2254249 | MS.gene026968:CDS |
| AAAGGAACTATAGACGTGTC+AGG | 0.536353 | 6.2:+2253402 | None:intergenic |
| AACAGGAAGAAGTGCATCCT+CGG | 0.537876 | 6.2:+2255090 | None:intergenic |
| TGTGATGTCAATATACTGGC+CGG | 0.538363 | 6.2:+2255036 | None:intergenic |
| GTGCCACGGGAAATTGTTGA+AGG | 0.543940 | 6.2:+2265561 | None:intergenic |
| GACATCACAGGAATCACTAA+AGG | 0.546543 | 6.2:-2255022 | MS.gene026968:CDS |
| AGAAATTTGATGTGGGTGAA+AGG | 0.548749 | 6.2:-2253962 | MS.gene026968:CDS |
| CAAAGTTCCCTGTAGCTCCT+GGG | 0.553971 | 6.2:+2253454 | None:intergenic |
| TCAAGTCAAAACTCCAGAGA+AGG | 0.559481 | 6.2:-2265351 | MS.gene026968:CDS |
| ACACTTGACAAAGCCTGAAG+TGG | 0.560843 | 6.2:-2255170 | MS.gene026968:CDS |
| TTCAAAAGCACATAAAACCA+TGG | 0.565886 | 6.2:-2254268 | MS.gene026968:CDS |
| AAGCATTCCTGTAGATCCCA+TGG | 0.568063 | 6.2:+2254251 | None:intergenic |
| GCTGGAGGTCCAGCATCCCA+CGG | 0.573473 | 6.2:-2254294 | MS.gene026968:CDS |
| CTGGAGGTCCAGCATCCCAC+GGG | 0.585754 | 6.2:-2254293 | MS.gene026968:CDS |
| GGCCAGTATATTGACATCAC+AGG | 0.587654 | 6.2:-2255034 | MS.gene026968:CDS |
| GTGATGTCAATATACTGGCC+GGG | 0.589284 | 6.2:+2255037 | None:intergenic |
| CGCAGGTCCCAGGAGCTACA+GGG | 0.595348 | 6.2:-2253461 | MS.gene026968:intron |
| GTTTCCAGGGTGTGATGACA+CGG | 0.597663 | 6.2:-2254326 | MS.gene026968:intron |
| TCTCCAAGATCAGCAATCAA+AGG | 0.597900 | 6.2:+2253333 | None:intergenic |
| TCAAAAGCACATAAAACCAT+GGG | 0.598380 | 6.2:-2254267 | MS.gene026968:CDS |
| GGTACAAAGTAAGTTGGGAA+AGG | 0.600374 | 6.2:+2253384 | None:intergenic |
| GAGGATGCACTTCTTCCTGT+TGG | 0.601500 | 6.2:-2255088 | MS.gene026968:CDS |
| ACCTCTCGAAAACGCCAGCA+TGG | 0.602437 | 6.2:+2265595 | None:intergenic |
| CACTTGACAAAGCCTGAAGT+GGG | 0.609676 | 6.2:-2255169 | MS.gene026968:CDS |
| AAGATGCCAGGGAGAATGGG+TGG | 0.609930 | 6.2:-2254034 | MS.gene026968:CDS |
| CCAGGGTGTGATGACACGGT+GGG | 0.611262 | 6.2:-2254322 | MS.gene026968:intron |
| GTCAAAACTCCAGAGAAGGA+AGG | 0.627398 | 6.2:-2265347 | MS.gene026968:CDS |
| AATGTGGAATGACTGCACAT+TGG | 0.638693 | 6.2:-2265433 | MS.gene026968:CDS |
| GGTCTTGTAGCTGTAAAATG+TGG | 0.640499 | 6.2:-2265449 | MS.gene026968:CDS |
| TCGCCTTCAACAATTTCCCG+TGG | 0.645695 | 6.2:-2265564 | MS.gene026968:CDS |
| CCAAGAGTTTCGAGTGACCG+AGG | 0.654882 | 6.2:-2255107 | MS.gene026968:CDS |
| AGATGCCAGGGAGAATGGGT+GGG | 0.656976 | 6.2:-2254033 | MS.gene026968:CDS |
| ATCCTGCAAGAAATTTGATG+TGG | 0.660543 | 6.2:-2253970 | MS.gene026968:CDS |
| TCCTGCAAGAAATTTGATGT+GGG | 0.674361 | 6.2:-2253969 | MS.gene026968:CDS |
| TCCAGGGTGTGATGACACGG+TGG | 0.698119 | 6.2:-2254323 | MS.gene026968:intron |
| ACTGCACATTGGGATAAATG+GGG | 0.760426 | 6.2:-2265422 | MS.gene026968:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 2253305 | 2265615 | 2253305 | ID=MS.gene026968 |
| chr6.2 | mRNA | 2253305 | 2265615 | 2253305 | ID=MS.gene026968.t1;Parent=MS.gene026968 |
| chr6.2 | exon | 2265331 | 2265615 | 2265331 | ID=MS.gene026968.t1.exon1;Parent=MS.gene026968.t1 |
| chr6.2 | CDS | 2265331 | 2265615 | 2265331 | ID=cds.MS.gene026968.t1;Parent=MS.gene026968.t1 |
| chr6.2 | exon | 2255009 | 2255218 | 2255009 | ID=MS.gene026968.t1.exon2;Parent=MS.gene026968.t1 |
| chr6.2 | CDS | 2255009 | 2255218 | 2255009 | ID=cds.MS.gene026968.t1;Parent=MS.gene026968.t1 |
| chr6.2 | exon | 2254239 | 2254340 | 2254239 | ID=MS.gene026968.t1.exon3;Parent=MS.gene026968.t1 |
| chr6.2 | CDS | 2254239 | 2254340 | 2254239 | ID=cds.MS.gene026968.t1;Parent=MS.gene026968.t1 |
| chr6.2 | exon | 2253958 | 2254071 | 2253958 | ID=MS.gene026968.t1.exon4;Parent=MS.gene026968.t1 |
| chr6.2 | CDS | 2253958 | 2254071 | 2253958 | ID=cds.MS.gene026968.t1;Parent=MS.gene026968.t1 |
| chr6.2 | exon | 2253305 | 2253478 | 2253305 | ID=MS.gene026968.t1.exon5;Parent=MS.gene026968.t1 |
| chr6.2 | CDS | 2253305 | 2253478 | 2253305 | ID=cds.MS.gene026968.t1;Parent=MS.gene026968.t1 |
| Gene Sequence |
| Protein sequence |