Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60861.t1 | XP_024640795.1 | 98.3 | 294 | 5 | 0 | 1 | 294 | 1 | 294 | 1.90E-168 | 601.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60861.t1 | Q9LRN8 | 64.5 | 324 | 85 | 4 | 1 | 294 | 1 | 324 | 6.4e-109 | 395.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60861.t1 | G7I462 | 98.3 | 294 | 5 | 0 | 1 | 294 | 54 | 347 | 1.3e-168 | 601.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050838 | MS.gene60861 | 0.804068 | 2.58E-49 | -1.69E-46 |
| MS.gene051850 | MS.gene60861 | 0.82586 | 3.72E-54 | -1.69E-46 |
| MS.gene057052 | MS.gene60861 | 0.803952 | 2.73E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene60861 | 0.825239 | 5.22E-54 | -1.69E-46 |
| MS.gene06001 | MS.gene60861 | 0.800254 | 1.57E-48 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60861.t1 | MTR_1g093060 | 98.299 | 294 | 5 | 0 | 1 | 294 | 54 | 347 | 0.0 | 597 |
| MS.gene60861.t1 | MTR_6g006970 | 92.857 | 294 | 21 | 0 | 1 | 294 | 1 | 294 | 0.0 | 572 |
| MS.gene60861.t1 | MTR_2g090370 | 93.269 | 104 | 7 | 0 | 189 | 292 | 1 | 104 | 2.40e-68 | 213 |
| MS.gene60861.t1 | MTR_3g118210 | 41.063 | 207 | 116 | 6 | 49 | 251 | 58 | 262 | 6.36e-43 | 148 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60861.t1 | AT3G17465 | 66.975 | 324 | 77 | 4 | 1 | 294 | 1 | 324 | 1.77e-147 | 417 |
| MS.gene60861.t1 | AT2G43030 | 38.835 | 206 | 122 | 4 | 49 | 251 | 57 | 261 | 4.59e-39 | 138 |
Find 84 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGATGTGGATCCATTTA+TGG | 0.158517 | 1.4:-73230548 | MS.gene60861:CDS |
| ACACCAGTTCTTTGTGAATT+TGG | 0.165812 | 1.4:+73233278 | None:intergenic |
| TGACTGCTCATTGGGATAAA+TGG | 0.166624 | 1.4:-73233235 | MS.gene60861:CDS |
| CTCACTGTTCAGGTCTTTAA+AGG | 0.228704 | 1.4:-73231347 | MS.gene60861:intron |
| CTTTAATCAGTAACCATAAA+TGG | 0.233502 | 1.4:+73230535 | None:intergenic |
| GAATTCCAATTTCTATCCTT+TGG | 0.239774 | 1.4:-73233205 | MS.gene60861:CDS |
| AAACCTTTGGTTGCTGATCT+TGG | 0.318983 | 1.4:-73230568 | MS.gene60861:CDS |
| TCTACCCAAAGGATAGAAAT+TGG | 0.334271 | 1.4:+73233200 | None:intergenic |
| AACCTTTGGTTGCTGATCTT+GGG | 0.341776 | 1.4:-73230567 | MS.gene60861:CDS |
| ACCCACATCAAATTTCTTGC+TGG | 0.343726 | 1.4:+73231254 | None:intergenic |
| GTTCAGATGTGGAGACTATA+AGG | 0.352256 | 1.4:-73233331 | MS.gene60861:CDS |
| CAGGGTGTAATGAAGAAGTA+TGG | 0.352968 | 1.4:-73231575 | MS.gene60861:CDS |
| CATACTGCCCAGGAACAAAA+TGG | 0.372996 | 1.4:+73232396 | None:intergenic |
| GCCCTAAAATGACCCACTTC+AGG | 0.379527 | 1.4:+73232506 | None:intergenic |
| TCATCTGAATCTTCATCTTC+CGG | 0.389387 | 1.4:+73230595 | None:intergenic |
| TTCAGATGATATGAAACCTT+TGG | 0.395479 | 1.4:-73230581 | MS.gene60861:CDS |
| AATTCCAATTTCTATCCTTT+GGG | 0.400773 | 1.4:-73233204 | MS.gene60861:CDS |
| ATGAAGAAGTATGGATTTCA+TGG | 0.403214 | 1.4:-73231566 | MS.gene60861:CDS |
| GACTGCTCATTGGGATAAAT+GGG | 0.404613 | 1.4:-73233234 | MS.gene60861:CDS |
| GGTTGCTGATCTTGGGGATG+TGG | 0.407346 | 1.4:-73230560 | MS.gene60861:CDS |
| GAACAATAGCCTTCCTTCTC+AGG | 0.410835 | 1.4:+73233149 | None:intergenic |
| TAGAAAGATGCCAGGGAGAA+TGG | 0.416986 | 1.4:-73231324 | MS.gene60861:CDS |
| TGCTTCCCACCCATTCTCCC+TGG | 0.421120 | 1.4:+73231314 | None:intergenic |
| ACAAAGTTCCCTGTAGCTCC+TGG | 0.431609 | 1.4:+73230685 | None:intergenic |
| AGGAATACTTGGTCCTTGTA+AGG | 0.431878 | 1.4:-73231492 | MS.gene60861:intron |
| GATTGGTTGTGGACAGAAGA+AGG | 0.441589 | 1.4:-73232546 | MS.gene60861:CDS |
| ACACAGGTCCCAGGAGCTAC+AGG | 0.448282 | 1.4:-73230694 | MS.gene60861:intron |
| ACCTTTGGTTGCTGATCTTG+GGG | 0.448994 | 1.4:-73230566 | MS.gene60861:CDS |
| ATGTGGAATGACTGCTCATT+GGG | 0.453159 | 1.4:-73233243 | MS.gene60861:CDS |
| TCTTCCGGCACAAAGTAAGT+TGG | 0.469195 | 1.4:+73230610 | None:intergenic |
| AGATGACAACATTGTCTCTC+AGG | 0.475183 | 1.4:-73233180 | MS.gene60861:CDS |
| ACACCAAATTCACAAAGAAC+TGG | 0.478282 | 1.4:-73233281 | MS.gene60861:CDS |
| CTTCCGGCACAAAGTAAGTT+GGG | 0.483444 | 1.4:+73230611 | None:intergenic |
| AGAAAGATGCCAGGGAGAAT+GGG | 0.487342 | 1.4:-73231323 | MS.gene60861:CDS |
| AGAAATTTGATGTGGGTGAA+AGG | 0.489286 | 1.4:-73231248 | MS.gene60861:CDS |
| GGACTCCATCCAACCTTACA+AGG | 0.491579 | 1.4:+73231479 | None:intergenic |
| CATAGAACCATGGGATCTAC+AGG | 0.492630 | 1.4:-73231512 | MS.gene60861:CDS |
| AATCGCGGCAGTGGTGCCAC+GGG | 0.495730 | 1.4:+73233359 | None:intergenic |
| ACAGGAATCACCAAAGGAAA+AGG | 0.499760 | 1.4:-73232365 | MS.gene60861:CDS |
| AATGTGGAATGACTGCTCAT+TGG | 0.503569 | 1.4:-73233244 | MS.gene60861:CDS |
| ACATTAAGTGATGTACCAAC+AGG | 0.507292 | 1.4:+73232422 | None:intergenic |
| TATGTGCTTTCGAATTCCCA+TGG | 0.513084 | 1.4:+73231531 | None:intergenic |
| TCTTGAAGCTTCCTCTTCAT+CGG | 0.518555 | 1.4:+73232473 | None:intergenic |
| GAATTTGGTGTCATCACACT+AGG | 0.526237 | 1.4:+73233293 | None:intergenic |
| CTCAAGGAGTTCCGATGAAG+AGG | 0.527266 | 1.4:-73232484 | MS.gene60861:CDS |
| TTTGATGTGGGTGAAAGGCC+AGG | 0.528326 | 1.4:-73231243 | MS.gene60861:intron |
| AAAGGAAGTATAGATGTGTC+AGG | 0.528945 | 1.4:+73230634 | None:intergenic |
| GGAAGGCTATTGTTCTCTCC+AGG | 0.530451 | 1.4:-73233141 | MS.gene60861:intron |
| ATGGGATCTACAGGAATACT+TGG | 0.533632 | 1.4:-73231503 | MS.gene60861:CDS |
| AAATCGCGGCAGTGGTGCCA+CGG | 0.542479 | 1.4:+73233358 | None:intergenic |
| GAGGATGCACTTCTTCCTGT+TGG | 0.552055 | 1.4:-73232437 | MS.gene60861:CDS |
| TTTCCCAACTTACTTTGTGC+CGG | 0.552953 | 1.4:-73230614 | MS.gene60861:CDS |
| CAAAGTTCCCTGTAGCTCCT+GGG | 0.553971 | 1.4:+73230686 | None:intergenic |
| CATGGAGGTTCAGCATCCCA+TGG | 0.557351 | 1.4:-73231548 | MS.gene60861:CDS |
| ACACTTGACAAAGCCTGAAG+TGG | 0.560843 | 1.4:-73232519 | MS.gene60861:CDS |
| TTTAAAGGTAGAAAGATGCC+AGG | 0.564006 | 1.4:-73231332 | MS.gene60861:CDS |
| ATGTGCTTTCGAATTCCCAT+GGG | 0.571228 | 1.4:+73231532 | None:intergenic |
| AAGTATTCCTGTAGATCCCA+TGG | 0.577273 | 1.4:+73231505 | None:intergenic |
| TCAAGAGTTTCGAGTGACAG+AGG | 0.581725 | 1.4:-73232456 | MS.gene60861:CDS |
| GTGTGCACAACACAGGTCCC+AGG | 0.582644 | 1.4:-73230703 | MS.gene60861:intron |
| TCGAAAGCACATAGAACCAT+GGG | 0.582779 | 1.4:-73231521 | MS.gene60861:CDS |
| GGGCAGTATGTTGACATCAC+AGG | 0.583754 | 1.4:-73232383 | MS.gene60861:CDS |
| ATGGAGGTTCAGCATCCCAT+GGG | 0.591854 | 1.4:-73231547 | MS.gene60861:CDS |
| TCAGGTCAAGACTCCTGAGA+AGG | 0.594779 | 1.4:-73233162 | MS.gene60861:CDS |
| AAGATGCCAGGGAGAATGGG+TGG | 0.599236 | 1.4:-73231320 | MS.gene60861:CDS |
| GGCACAAAGTAAGTTGGGAA+AGG | 0.607369 | 1.4:+73230616 | None:intergenic |
| GTGATGTCAACATACTGCCC+AGG | 0.609175 | 1.4:+73232386 | None:intergenic |
| ACCTCTTGAAAACGCCAGCA+TGG | 0.609546 | 1.4:+73233406 | None:intergenic |
| CACTTGACAAAGCCTGAAGT+GGG | 0.609676 | 1.4:-73232518 | MS.gene60861:CDS |
| TTCGAAAGCACATAGAACCA+TGG | 0.614239 | 1.4:-73231522 | MS.gene60861:CDS |
| ATCCAGCAAGAAATTTGATG+TGG | 0.622717 | 1.4:-73231256 | MS.gene60861:CDS |
| CACAGGTCCCAGGAGCTACA+GGG | 0.625211 | 1.4:-73230693 | MS.gene60861:intron |
| GTCAAGACTCCTGAGAAGGA+AGG | 0.630125 | 1.4:-73233158 | MS.gene60861:CDS |
| AGATGCCAGGGAGAATGGGT+GGG | 0.644345 | 1.4:-73231319 | MS.gene60861:CDS |
| GGTGTTATAGCTGTAAAATG+TGG | 0.647527 | 1.4:-73233260 | MS.gene60861:CDS |
| TCCCCAAGATCAGCAACCAA+AGG | 0.647605 | 1.4:+73230565 | None:intergenic |
| GACATCACAGGAATCACCAA+AGG | 0.651363 | 1.4:-73232371 | MS.gene60861:CDS |
| CAATGTTGTCATCTACCCAA+AGG | 0.657641 | 1.4:+73233189 | None:intergenic |
| TTAAAGGTAGAAAGATGCCA+GGG | 0.664670 | 1.4:-73231331 | MS.gene60861:CDS |
| TCCAGCAAGAAATTTGATGT+GGG | 0.677547 | 1.4:-73231255 | MS.gene60861:CDS |
| AAGAAGTATGGATTTCATGG+AGG | 0.684184 | 1.4:-73231563 | MS.gene60861:CDS |
| ATCGCGGCAGTGGTGCCACG+GGG | 0.726950 | 1.4:+73233360 | None:intergenic |
| TCGTCTTCGACAATTCCCCG+TGG | 0.741512 | 1.4:-73233375 | MS.gene60861:CDS |
| ACTGCTCATTGGGATAAATG+GGG | 0.750912 | 1.4:-73233233 | MS.gene60861:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTAAATTTGTATTTGT+AGG | - | chr1.4:73231811-73231830 | MS.gene60861:intron | 10.0% |
| !! | AATGTTTATAATGAATAATG+CGG | + | chr1.4:73230952-73230971 | None:intergenic | 15.0% |
| !! | CTACTAAATTAAATACAAAA+TGG | + | chr1.4:73233144-73233163 | None:intergenic | 15.0% |
| !! | GACAGAAATTATTATTTATA+TGG | + | chr1.4:73231653-73231672 | None:intergenic | 15.0% |
| !! | GTTTATAATGAGTTATTAAA+TGG | - | chr1.4:73231259-73231278 | MS.gene60861:CDS | 15.0% |
| !! | TTGAACAAAACAATAAATAA+TGG | + | chr1.4:73232001-73232020 | None:intergenic | 15.0% |
| !! | TTGATTACATTAGTTATATT+AGG | - | chr1.4:73231880-73231899 | MS.gene60861:intron | 15.0% |
| !! | AAAGAACAGTAAAAAATGTA+TGG | - | chr1.4:73232649-73232668 | MS.gene60861:intron | 20.0% |
| !! | AAGAACAGTAAAAAATGTAT+GGG | - | chr1.4:73232650-73232669 | MS.gene60861:intron | 20.0% |
| !! | ACAAAAAAACAATCATCTTA+GGG | + | chr1.4:73231851-73231870 | None:intergenic | 20.0% |
| !! | CAAATTCAATCATGTATTAT+AGG | - | chr1.4:73231975-73231994 | MS.gene60861:intron | 20.0% |
| !! | GCAGAAAAATAAACAATAAA+TGG | + | chr1.4:73232215-73232234 | None:intergenic | 20.0% |
| !! | TACAAAAAAACAATCATCTT+AGG | + | chr1.4:73231852-73231871 | None:intergenic | 20.0% |
| !! | TATATATAGAAGACATATCT+AGG | + | chr1.4:73231316-73231335 | None:intergenic | 20.0% |
| !! | TGTCAACTTATTATATCATT+AGG | + | chr1.4:73231957-73231976 | None:intergenic | 20.0% |
| !! | TTATTATATCATTAGGATTC+AGG | + | chr1.4:73231950-73231969 | None:intergenic | 20.0% |
| !!! | AAATTATATTTTCTGTTTCC+AGG | - | chr1.4:73232347-73232366 | MS.gene60861:intron | 20.0% |
| !!! | AAGATGATTGTTTTTTTGTA+AGG | - | chr1.4:73231852-73231871 | MS.gene60861:intron | 20.0% |
| !!! | AATTATATTTTCTGTTTCCA+GGG | - | chr1.4:73232348-73232367 | MS.gene60861:intron | 20.0% |
| !!! | AGATGATTGTTTTTTTGTAA+GGG | - | chr1.4:73231853-73231872 | MS.gene60861:intron | 20.0% |
| !!! | TTACACGTTTTTTTTTTGAA+TGG | - | chr1.4:73232303-73232322 | MS.gene60861:intron | 20.0% |
| !!! | TTTTGATGTACAAAATTTCT+TGG | + | chr1.4:73233079-73233098 | None:intergenic | 20.0% |
| ! | AACATGTAAAAACAATTACC+TGG | + | chr1.4:73232719-73232738 | None:intergenic | 25.0% |
| ! | AACTAAGAATACTAATCTGA+AGG | + | chr1.4:73232486-73232505 | None:intergenic | 25.0% |
| ! | AATTCCAATTTCTATCCTTT+GGG | - | chr1.4:73230737-73230756 | MS.gene60861:intron | 25.0% |
| ! | ACAGTAAAAAAAGCAGAATA+TGG | - | chr1.4:73231203-73231222 | MS.gene60861:intron | 25.0% |
| ! | ATTTACTTCTAGACAATCAT+TGG | - | chr1.4:73232042-73232061 | MS.gene60861:intron | 25.0% |
| ! | CACACATTAATTTATGAACT+TGG | - | chr1.4:73232742-73232761 | MS.gene60861:intron | 25.0% |
| ! | TAGCTCAATTATTCATTAAC+TGG | - | chr1.4:73233161-73233180 | MS.gene60861:CDS | 25.0% |
| ! | TTGAATTTCACCAATCTAAT+CGG | + | chr1.4:73231238-73231257 | None:intergenic | 25.0% |
| !! | ATATGAAAGTATGTAATACG+AGG | + | chr1.4:73231624-73231643 | None:intergenic | 25.0% |
| !! | GGCAAAAATATTTGAAATCT+CGG | - | chr1.4:73233182-73233201 | MS.gene60861:CDS | 25.0% |
| !! | TATGAAAGTATGTAATACGA+GGG | + | chr1.4:73231623-73231642 | None:intergenic | 25.0% |
| !!! | ATGCTTTGTTTTAGTTAGAT+TGG | - | chr1.4:73231378-73231397 | MS.gene60861:intron | 25.0% |
| AAAAAAACGTGTAACTGACA+AGG | + | chr1.4:73232297-73232316 | None:intergenic | 30.0% | |
| AATCCACATGAAACTCATTA+GGG | + | chr1.4:73230862-73230881 | None:intergenic | 30.0% | |
| AATGCTTATTCCTCTTTGTA+TGG | - | chr1.4:73233216-73233235 | MS.gene60861:CDS | 30.0% | |
| ACATCTGAACTAAAAAATCG+CGG | + | chr1.4:73230600-73230619 | None:intergenic | 30.0% | |
| ACTTGATCCTTAACATAGTA+TGG | - | chr1.4:73231149-73231168 | MS.gene60861:intron | 30.0% | |
| ATTATCGCCATACTATGTTA+AGG | + | chr1.4:73231159-73231178 | None:intergenic | 30.0% | |
| ATTTATGTTTCTCACTGTTC+AGG | - | chr1.4:73232584-73232603 | MS.gene60861:intron | 30.0% | |
| CGAAAATTTGTGTAGTTGAT+TGG | + | chr1.4:73230988-73231007 | None:intergenic | 30.0% | |
| CGTTTGTTTATTGACATGAT+TGG | - | chr1.4:73231769-73231788 | MS.gene60861:intron | 30.0% | |
| GAATTCCAATTTCTATCCTT+TGG | - | chr1.4:73230736-73230755 | MS.gene60861:intron | 30.0% | |
| GATTGCATAGATACAAATTC+TGG | - | chr1.4:73231106-73231125 | MS.gene60861:intron | 30.0% | |
| GGATGAATCAATCATATTCA+TGG | - | chr1.4:73232848-73232867 | MS.gene60861:intron | 30.0% | |
| TAATATCATCAAGAGAACGA+CGG | - | chr1.4:73233108-73233127 | MS.gene60861:intron | 30.0% | |
| TAATCCACATGAAACTCATT+AGG | + | chr1.4:73230863-73230882 | None:intergenic | 30.0% | |
| TACATGTTTATGCTTGTATG+TGG | - | chr1.4:73231696-73231715 | MS.gene60861:intron | 30.0% | |
| TTCAGATGATATGAAACCTT+TGG | - | chr1.4:73233360-73233379 | MS.gene60861:CDS | 30.0% | |
| TTGAAATCTCGGATTTATCA+CGG | - | chr1.4:73233193-73233212 | MS.gene60861:CDS | 30.0% | |
| TTGTCATTCATGTATGATTG+CGG | - | chr1.4:73232247-73232266 | MS.gene60861:intron | 30.0% | |
| TTGTGTAGTTGATTGGATTT+CGG | + | chr1.4:73230981-73231000 | None:intergenic | 30.0% | |
| ! | ATGAAGAAGTATGGATTTCA+TGG | - | chr1.4:73232375-73232394 | MS.gene60861:CDS | 30.0% |
| !! | AATCACTTGATTTGTGTATG+AGG | + | chr1.4:73232797-73232816 | None:intergenic | 30.0% |
| !! | GGGTAAGTAAAGTTTTAACA+TGG | + | chr1.4:73232884-73232903 | None:intergenic | 30.0% |
| !!! | TGTTTTAGTTAGATTGGTTG+TGG | - | chr1.4:73231384-73231403 | MS.gene60861:intron | 30.0% |
| ACACCAAATTCACAAAGAAC+TGG | - | chr1.4:73230660-73230679 | MS.gene60861:CDS | 35.0% | |
| ACACCAGTTCTTTGTGAATT+TGG | + | chr1.4:73230666-73230685 | None:intergenic | 35.0% | |
| ACATTAAGTGATGTACCAAC+AGG | + | chr1.4:73231522-73231541 | None:intergenic | 35.0% | |
| AGAAATTTGATGTGGGTGAA+AGG | - | chr1.4:73232693-73232712 | MS.gene60861:intron | 35.0% | |
| ATCCAGCAAGAAATTTGATG+TGG | - | chr1.4:73232685-73232704 | MS.gene60861:intron | 35.0% | |
| ATTTATGAACTTGGAGCTCT+AGG | - | chr1.4:73232751-73232770 | MS.gene60861:intron | 35.0% | |
| CATAGTATGGCGATAATATC+TGG | - | chr1.4:73231162-73231181 | MS.gene60861:intron | 35.0% | |
| GAGTGGCAACTTATTGTTAT+TGG | + | chr1.4:73231919-73231938 | None:intergenic | 35.0% | |
| GCGATAATATCTGGTTAGAT+TGG | - | chr1.4:73231171-73231190 | MS.gene60861:intron | 35.0% | |
| TAATCCGGAGTTCAATCAAA+GGG | + | chr1.4:73232904-73232923 | None:intergenic | 35.0% | |
| TATCCCTAATGAGTTTCATG+TGG | - | chr1.4:73230856-73230875 | MS.gene60861:intron | 35.0% | |
| TCATCTGAATCTTCATCTTC+CGG | + | chr1.4:73233349-73233368 | None:intergenic | 35.0% | |
| TCATTAATGACCAAGTGTCT+TGG | + | chr1.4:73232974-73232993 | None:intergenic | 35.0% | |
| TCCAGCAAGAAATTTGATGT+GGG | - | chr1.4:73232686-73232705 | MS.gene60861:intron | 35.0% | |
| TCTACCCAAAGGATAGAAAT+TGG | + | chr1.4:73230744-73230763 | None:intergenic | 35.0% | |
| TGCGGAGTAACTAAACTAAA+AGG | + | chr1.4:73230934-73230953 | None:intergenic | 35.0% | |
| TGCTATTATATAGACACGTG+CGG | + | chr1.4:73231724-73231743 | None:intergenic | 35.0% | |
| TTAAAGGTAGAAAGATGCCA+GGG | - | chr1.4:73232610-73232629 | MS.gene60861:intron | 35.0% | |
| TTTAAAGGTAGAAAGATGCC+AGG | - | chr1.4:73232609-73232628 | MS.gene60861:intron | 35.0% | |
| TTTATGAACTTGGAGCTCTA+GGG | - | chr1.4:73232752-73232771 | MS.gene60861:intron | 35.0% | |
| ! | AAAGGAAGTATAGATGTGTC+AGG | + | chr1.4:73233310-73233329 | None:intergenic | 35.0% |
| ! | AAGAAGTATGGATTTCATGG+AGG | - | chr1.4:73232378-73232397 | MS.gene60861:CDS | 35.0% |
| ! | GGTGTTATAGCTGTAAAATG+TGG | - | chr1.4:73230681-73230700 | MS.gene60861:CDS | 35.0% |
| ! | TTTTTGAATGGCAGTTACAC+AGG | - | chr1.4:73232315-73232334 | MS.gene60861:intron | 35.0% |
| !! | GGTTGATGAGTTTGAGTTAA+AGG | - | chr1.4:73232827-73232846 | MS.gene60861:intron | 35.0% |
| !!! | GCGATTTTTTAGTTCAGATG+TGG | - | chr1.4:73230599-73230618 | MS.gene60861:CDS | 35.0% |
| AAACCTTTGGTTGCTGATCT+TGG | - | chr1.4:73233373-73233392 | MS.gene60861:CDS | 40.0% | |
| AACCTTTGGTTGCTGATCTT+GGG | - | chr1.4:73233374-73233393 | MS.gene60861:CDS | 40.0% | |
| AACTGCAAATGTGCAAATGG+TGG | + | chr1.4:73233023-73233042 | None:intergenic | 40.0% | |
| AAGACATATCTAGGTACTCC+AGG | + | chr1.4:73231307-73231326 | None:intergenic | 40.0% | |
| AAGTATTCCTGTAGATCCCA+TGG | + | chr1.4:73232439-73232458 | None:intergenic | 40.0% | |
| AATCTTGCACGTACAAGTTC+AGG | - | chr1.4:73232092-73232111 | MS.gene60861:intron | 40.0% | |
| AATGTGGAATGACTGCTCAT+TGG | - | chr1.4:73230697-73230716 | MS.gene60861:intron | 40.0% | |
| ACAGGAATCACCAAAGGAAA+AGG | - | chr1.4:73231576-73231595 | MS.gene60861:intron | 40.0% | |
| ACCCACATCAAATTTCTTGC+TGG | + | chr1.4:73232690-73232709 | None:intergenic | 40.0% | |
| ACTGCAAATGTGCAAATGGT+GGG | + | chr1.4:73233022-73233041 | None:intergenic | 40.0% | |
| ACTGCTCATTGGGATAAATG+GGG | - | chr1.4:73230708-73230727 | MS.gene60861:intron | 40.0% | |
| AGATGACAACATTGTCTCTC+AGG | - | chr1.4:73230761-73230780 | MS.gene60861:intron | 40.0% | |
| AGGAATACTTGGTCCTTGTA+AGG | - | chr1.4:73232449-73232468 | MS.gene60861:CDS | 40.0% | |
| ATACTTGGTCCTTGTAAGGT+TGG | - | chr1.4:73232453-73232472 | MS.gene60861:CDS | 40.0% | |
| ATGGGATCTACAGGAATACT+TGG | - | chr1.4:73232438-73232457 | MS.gene60861:CDS | 40.0% | |
| ATGTGCTTTCGAATTCCCAT+GGG | + | chr1.4:73232412-73232431 | None:intergenic | 40.0% | |
| ATGTGGAATGACTGCTCATT+GGG | - | chr1.4:73230698-73230717 | MS.gene60861:intron | 40.0% | |
| ATTCAGCTTAGAGTTACTCC+TGG | - | chr1.4:73231286-73231305 | MS.gene60861:CDS | 40.0% | |
| CAATGTTGTCATCTACCCAA+AGG | + | chr1.4:73230755-73230774 | None:intergenic | 40.0% | |
| CAGGGTGTAATGAAGAAGTA+TGG | - | chr1.4:73232366-73232385 | MS.gene60861:CDS | 40.0% | |
| CATACTTCTTCATTACACCC+TGG | + | chr1.4:73232368-73232387 | None:intergenic | 40.0% | |
| CCAATATCAACCAAGACACT+TGG | - | chr1.4:73232961-73232980 | MS.gene60861:intron | 40.0% | |
| CCATTTGCACATTTGCAGTT+CGG | - | chr1.4:73233023-73233042 | MS.gene60861:intron | 40.0% | |
| CTCACTGTTCAGGTCTTTAA+AGG | - | chr1.4:73232594-73232613 | MS.gene60861:intron | 40.0% | |
| CTTACCCTTTGATTGAACTC+CGG | - | chr1.4:73232897-73232916 | MS.gene60861:intron | 40.0% | |
| GACTGCTCATTGGGATAAAT+GGG | - | chr1.4:73230707-73230726 | MS.gene60861:intron | 40.0% | |
| GATTGAACTCCGGATTACTA+GGG | - | chr1.4:73232907-73232926 | MS.gene60861:intron | 40.0% | |
| GCTATTATATAGACACGTGC+GGG | + | chr1.4:73231723-73231742 | None:intergenic | 40.0% | |
| GTAATCCGGAGTTCAATCAA+AGG | + | chr1.4:73232905-73232924 | None:intergenic | 40.0% | |
| GTGACAGTATCCGATTAGAT+TGG | - | chr1.4:73231225-73231244 | MS.gene60861:intron | 40.0% | |
| GTTCAGATGTGGAGACTATA+AGG | - | chr1.4:73230610-73230629 | MS.gene60861:CDS | 40.0% | |
| TATGTGCTTTCGAATTCCCA+TGG | + | chr1.4:73232413-73232432 | None:intergenic | 40.0% | |
| TCTTGAAGCTTCCTCTTCAT+CGG | + | chr1.4:73231471-73231490 | None:intergenic | 40.0% | |
| TGACTGCTCATTGGGATAAA+TGG | - | chr1.4:73230706-73230725 | MS.gene60861:intron | 40.0% | |
| TGATTGAACTCCGGATTACT+AGG | - | chr1.4:73232906-73232925 | MS.gene60861:intron | 40.0% | |
| TGCGTTTCAAATTTCCAGAG+AGG | + | chr1.4:73232162-73232181 | None:intergenic | 40.0% | |
| TTCAAATTTCCAGAGAGGTC+AGG | + | chr1.4:73232157-73232176 | None:intergenic | 40.0% | |
| TTTCCCAACTTACTTTGTGC+CGG | - | chr1.4:73233327-73233346 | MS.gene60861:CDS | 40.0% | |
| ! | AACGCAAAATGTTGAGTTGC+AGG | - | chr1.4:73232176-73232195 | MS.gene60861:intron | 40.0% |
| ! | CACCAAAGGAAAAGGTTTTC+AGG | - | chr1.4:73231584-73231603 | MS.gene60861:intron | 40.0% |
| ! | CACCTGAAAACCTTTTCCTT+TGG | + | chr1.4:73231589-73231608 | None:intergenic | 40.0% |
| ! | CCAAGTGTCTTGGTTGATAT+TGG | + | chr1.4:73232964-73232983 | None:intergenic | 40.0% |
| ! | TCGAAAGCACATAGAACCAT+GGG | - | chr1.4:73232420-73232439 | MS.gene60861:CDS | 40.0% |
| ! | TTATGAACTTGGAGCTCTAG+GGG | - | chr1.4:73232753-73232772 | MS.gene60861:intron | 40.0% |
| ! | TTCGAAAGCACATAGAACCA+TGG | - | chr1.4:73232419-73232438 | MS.gene60861:CDS | 40.0% |
| !! | AATGTTCGCCATTTTGTTCC+TGG | - | chr1.4:73231537-73231556 | MS.gene60861:CDS | 40.0% |
| !! | ATGTTCGCCATTTTGTTCCT+GGG | - | chr1.4:73231538-73231557 | MS.gene60861:CDS | 40.0% |
| !! | GAATTTGGTGTCATCACACT+AGG | + | chr1.4:73230651-73230670 | None:intergenic | 40.0% |
| !! | TAGCAGTTGAGTTGAATGCA+TGG | - | chr1.4:73231739-73231758 | MS.gene60861:intron | 40.0% |
| ACACTTGACAAAGCCTGAAG+TGG | - | chr1.4:73231422-73231441 | MS.gene60861:intron | 45.0% | |
| ACCTTTGGTTGCTGATCTTG+GGG | - | chr1.4:73233375-73233394 | MS.gene60861:CDS | 45.0% | |
| AGAAAGATGCCAGGGAGAAT+GGG | - | chr1.4:73232618-73232637 | MS.gene60861:intron | 45.0% | |
| ATCAAGTGATTGAGCTCGAG+CGG | - | chr1.4:73232806-73232825 | MS.gene60861:intron | 45.0% | |
| CACTTGACAAAGCCTGAAGT+GGG | - | chr1.4:73231423-73231442 | MS.gene60861:intron | 45.0% | |
| CATACTGCCCAGGAACAAAA+TGG | + | chr1.4:73231548-73231567 | None:intergenic | 45.0% | |
| CATAGAACCATGGGATCTAC+AGG | - | chr1.4:73232429-73232448 | MS.gene60861:CDS | 45.0% | |
| CCAGAGAGGTCAGGTAAAAT+GGG | + | chr1.4:73232148-73232167 | None:intergenic | 45.0% | |
| CCGAACTGCAAATGTGCAAA+TGG | + | chr1.4:73233026-73233045 | None:intergenic | 45.0% | |
| CTTCCGGCACAAAGTAAGTT+GGG | + | chr1.4:73233333-73233352 | None:intergenic | 45.0% | |
| GAACAATAGCCTTCCTTCTC+AGG | + | chr1.4:73230795-73230814 | None:intergenic | 45.0% | |
| GAACTAAAAAATCGCGGCAG+TGG | + | chr1.4:73230594-73230613 | None:intergenic | 45.0% | |
| GACATCACAGGAATCACCAA+AGG | - | chr1.4:73231570-73231589 | MS.gene60861:CDS | 45.0% | |
| GCACGTACAAGTTCAGGTAA+TGG | - | chr1.4:73232098-73232117 | MS.gene60861:intron | 45.0% | |
| GTTGTGCACACCATACAAAG+AGG | + | chr1.4:73233229-73233248 | None:intergenic | 45.0% | |
| TAGAAAGATGCCAGGGAGAA+TGG | - | chr1.4:73232617-73232636 | MS.gene60861:intron | 45.0% | |
| TATCATCAAGAGAACGACGG+TGG | - | chr1.4:73233111-73233130 | MS.gene60861:intron | 45.0% | |
| TCCAGAGAGGTCAGGTAAAA+TGG | + | chr1.4:73232149-73232168 | None:intergenic | 45.0% | |
| TCTTCCGGCACAAAGTAAGT+TGG | + | chr1.4:73233334-73233353 | None:intergenic | 45.0% | |
| TGGGGATGTGGATCCATTTA+TGG | - | chr1.4:73233393-73233412 | MS.gene60861:CDS | 45.0% | |
| TTGGTCCTTGTAAGGTTGGA+TGG | - | chr1.4:73232457-73232476 | MS.gene60861:CDS | 45.0% | |
| TTGTATGGTGTGCACAACAC+AGG | - | chr1.4:73233231-73233250 | MS.gene60861:CDS | 45.0% | |
| ! | GATTGGTTGTGGACAGAAGA+AGG | - | chr1.4:73231395-73231414 | MS.gene60861:intron | 45.0% |
| ! | GGCACAAAGTAAGTTGGGAA+AGG | + | chr1.4:73233328-73233347 | None:intergenic | 45.0% |
| ! | GTTGAGTTGCAGGCTTTCTA+GGG | - | chr1.4:73232186-73232205 | MS.gene60861:intron | 45.0% |
| ! | TACTAGGGCTCCTTCCTTTT+GGG | - | chr1.4:73232922-73232941 | MS.gene60861:intron | 45.0% |
| ! | TCAAGAGTTTCGAGTGACAG+AGG | - | chr1.4:73231485-73231504 | MS.gene60861:intron | 45.0% |
| ! | TGTTGAGTTGCAGGCTTTCT+AGG | - | chr1.4:73232185-73232204 | MS.gene60861:intron | 45.0% |
| ! | TTACTAGGGCTCCTTCCTTT+TGG | - | chr1.4:73232921-73232940 | MS.gene60861:intron | 45.0% |
| ! | TTGACTCTCTGGTTCCCAAA+AGG | + | chr1.4:73232939-73232958 | None:intergenic | 45.0% |
| ! | TTGAGTTGCAGGCTTTCTAG+GGG | - | chr1.4:73232187-73232206 | MS.gene60861:intron | 45.0% |
| !! | AGCCTGAAGTGGGTCATTTT+AGG | - | chr1.4:73231433-73231452 | MS.gene60861:intron | 45.0% |
| !! | GCCTGAAGTGGGTCATTTTA+GGG | - | chr1.4:73231434-73231453 | MS.gene60861:intron | 45.0% |
| !! | TGATATTGGCCTTGACTCTC+TGG | + | chr1.4:73232950-73232969 | None:intergenic | 45.0% |
| !! | TTTTGGGAACCAGAGAGTCA+AGG | - | chr1.4:73232938-73232957 | MS.gene60861:intron | 45.0% |
| ACAAAGTTCCCTGTAGCTCC+TGG | + | chr1.4:73233259-73233278 | None:intergenic | 50.0% | |
| AGAATGAAGCAGAACGCACC+TGG | + | chr1.4:73230821-73230840 | None:intergenic | 50.0% | |
| AGGAAGGAGCCCTAGTAATC+CGG | + | chr1.4:73232919-73232938 | None:intergenic | 50.0% | |
| ATGGAGGTTCAGCATCCCAT+GGG | - | chr1.4:73232394-73232413 | MS.gene60861:CDS | 50.0% | |
| CAAAGTTCCCTGTAGCTCCT+GGG | + | chr1.4:73233258-73233277 | None:intergenic | 50.0% | |
| CTCAAGGAGTTCCGATGAAG+AGG | - | chr1.4:73231457-73231476 | MS.gene60861:intron | 50.0% | |
| GAGGATGCACTTCTTCCTGT+TGG | - | chr1.4:73231504-73231523 | MS.gene60861:CDS | 50.0% | |
| GCCCTAAAATGACCCACTTC+AGG | + | chr1.4:73231438-73231457 | None:intergenic | 50.0% | |
| GGAAGGCTATTGTTCTCTCC+AGG | - | chr1.4:73230800-73230819 | MS.gene60861:intron | 50.0% | |
| GGACTCCATCCAACCTTACA+AGG | + | chr1.4:73232465-73232484 | None:intergenic | 50.0% | |
| GGGCAGTATGTTGACATCAC+AGG | - | chr1.4:73231558-73231577 | MS.gene60861:CDS | 50.0% | |
| GTCAAGACTCCTGAGAAGGA+AGG | - | chr1.4:73230783-73230802 | MS.gene60861:intron | 50.0% | |
| GTGATGTCAACATACTGCCC+AGG | + | chr1.4:73231558-73231577 | None:intergenic | 50.0% | |
| GTGCGTTCTGCTTCATTCTC+AGG | - | chr1.4:73230822-73230841 | MS.gene60861:intron | 50.0% | |
| TCAGGTCAAGACTCCTGAGA+AGG | - | chr1.4:73230779-73230798 | MS.gene60861:intron | 50.0% | |
| TCCCCAAGATCAGCAACCAA+AGG | + | chr1.4:73233379-73233398 | None:intergenic | 50.0% | |
| TGAGTTGCAGGCTTTCTAGG+GGG | - | chr1.4:73232188-73232207 | MS.gene60861:intron | 50.0% | |
| TTTGATGTGGGTGAAAGGCC+AGG | - | chr1.4:73232698-73232717 | MS.gene60861:intron | 50.0% | |
| ! | CCCATTTTACCTGACCTCTC+TGG | - | chr1.4:73232145-73232164 | MS.gene60861:intron | 50.0% |
| ! | CTCTCTGGTTCCCAAAAGGA+AGG | + | chr1.4:73232935-73232954 | None:intergenic | 50.0% |
| ! | GGATTCAGGACTCTGAAGAG+TGG | + | chr1.4:73231936-73231955 | None:intergenic | 50.0% |
| !!! | GTGGGTCATTTTAGGGCTCA+AGG | - | chr1.4:73231441-73231460 | MS.gene60861:intron | 50.0% |
| AAGATGCCAGGGAGAATGGG+TGG | - | chr1.4:73232621-73232640 | MS.gene60861:intron | 55.0% | |
| AGATGCCAGGGAGAATGGGT+GGG | - | chr1.4:73232622-73232641 | MS.gene60861:intron | 55.0% | |
| CATGGAGGTTCAGCATCCCA+TGG | - | chr1.4:73232393-73232412 | MS.gene60861:CDS | 55.0% | |
| GGTTGCTGATCTTGGGGATG+TGG | - | chr1.4:73233381-73233400 | MS.gene60861:CDS | 55.0% | |
| TCGTCTTCGACAATTCCCCG+TGG | - | chr1.4:73230566-73230585 | MS.gene60861:CDS | 55.0% | |
| ! | GAGTTGCAGGCTTTCTAGGG+GGG | - | chr1.4:73232189-73232208 | MS.gene60861:intron | 55.0% |
| !! | GCTGGCGTTTTCAAGAGGTG+TGG | - | chr1.4:73230539-73230558 | MS.gene60861:CDS | 55.0% |
| ACACAGGTCCCAGGAGCTAC+AGG | - | chr1.4:73233247-73233266 | MS.gene60861:CDS | 60.0% | |
| CACAGGTCCCAGGAGCTACA+GGG | - | chr1.4:73233248-73233267 | MS.gene60861:CDS | 60.0% | |
| GTGTGCACAACACAGGTCCC+AGG | - | chr1.4:73233238-73233257 | MS.gene60861:CDS | 60.0% | |
| TGCTTCCCACCCATTCTCCC+TGG | + | chr1.4:73232630-73232649 | None:intergenic | 60.0% | |
| ! | AAATCGCGGCAGTGGTGCCA+CGG | + | chr1.4:73230586-73230605 | None:intergenic | 60.0% |
| !! | AATCGCGGCAGTGGTGCCAC+GGG | + | chr1.4:73230585-73230604 | None:intergenic | 65.0% |
| !! | ATCGCGGCAGTGGTGCCACG+GGG | + | chr1.4:73230584-73230603 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 73230537 | 73233426 | 73230537 | ID=MS.gene60861 |
| chr1.4 | mRNA | 73230537 | 73233426 | 73230537 | ID=MS.gene60861.t1;Parent=MS.gene60861 |
| chr1.4 | exon | 73233142 | 73233426 | 73233142 | ID=MS.gene60861.t1.exon1;Parent=MS.gene60861.t1 |
| chr1.4 | CDS | 73233142 | 73233426 | 73233142 | ID=cds.MS.gene60861.t1;Parent=MS.gene60861.t1 |
| chr1.4 | exon | 73232358 | 73232567 | 73232358 | ID=MS.gene60861.t1.exon2;Parent=MS.gene60861.t1 |
| chr1.4 | CDS | 73232358 | 73232567 | 73232358 | ID=cds.MS.gene60861.t1;Parent=MS.gene60861.t1 |
| chr1.4 | exon | 73231493 | 73231594 | 73231493 | ID=MS.gene60861.t1.exon3;Parent=MS.gene60861.t1 |
| chr1.4 | CDS | 73231493 | 73231594 | 73231493 | ID=cds.MS.gene60861.t1;Parent=MS.gene60861.t1 |
| chr1.4 | exon | 73231244 | 73231357 | 73231244 | ID=MS.gene60861.t1.exon4;Parent=MS.gene60861.t1 |
| chr1.4 | CDS | 73231244 | 73231357 | 73231244 | ID=cds.MS.gene60861.t1;Parent=MS.gene60861.t1 |
| chr1.4 | exon | 73230537 | 73230710 | 73230537 | ID=MS.gene60861.t1.exon5;Parent=MS.gene60861.t1 |
| chr1.4 | CDS | 73230537 | 73230710 | 73230537 | ID=cds.MS.gene60861.t1;Parent=MS.gene60861.t1 |
| Gene Sequence |
| Protein sequence |
