AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene82915

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82915.t1 MTR_6g006970 95.238 294 14 0 1 294 1 294 0.0 579
MS.gene82915.t1 MTR_1g093060 92.857 294 21 0 1 294 54 347 0.0 570
MS.gene82915.t1 MTR_2g090370 94.231 104 6 0 189 292 1 104 5.35e-68 212
MS.gene82915.t1 MTR_3g118210 40.097 207 118 6 49 251 58 262 5.36e-42 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene82915.t1 AT3G17465 65.432 324 82 4 1 294 1 324 1.21e-145 412
MS.gene82915.t1 AT2G43030 37.379 206 125 4 49 251 57 261 1.61e-36 132

Find 75 sgRNAs with CRISPR-Local

Find 181 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCCGATTTCTATTCTT+TGG 0.167396 6.1:-2429782 MS.gene82915:CDS
TGACTGCACATTGGGATAAA+TGG 0.170253 6.1:-2429812 MS.gene82915:CDS
TCTTGGAGCTTCCTCTTCAT+TGG 0.324128 6.1:+2429018 None:intergenic
ACCCACATCAAATTTCTTGC+AGG 0.337634 6.1:+2427859 None:intergenic
TGGGGATGTTGATCCTTTCA+TGG 0.346905 6.1:-2427205 MS.gene82915:CDS
TCATCAGCATCTTCATCTTC+TGG 0.348517 6.1:+2427252 None:intergenic
AATTCCGATTTCTATTCTTT+GGG 0.348660 6.1:-2429781 MS.gene82915:CDS
AAACCTTTGATTGCTGATCT+TGG 0.356313 6.1:-2427225 MS.gene82915:CDS
AACCTTTGATTGCTGATCTT+GGG 0.373358 6.1:-2427224 MS.gene82915:CDS
GCCCTAAAATGACCCACTTC+AGG 0.379527 6.1:+2429051 None:intergenic
AGACCAGTTCGTCGTGAATT+CGG 0.379951 6.1:+2429855 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 6.1:-2429091 MS.gene82915:CDS
GTTCGGATGTGGAGACTATA+CGG 0.382445 6.1:-2429908 MS.gene82915:CDS
TATACTGGCCGGGAACAAAA+TGG 0.397207 6.1:+2428941 None:intergenic
GAACAATAACCTTCCTTCTC+TGG 0.412164 6.1:+2429726 None:intergenic
AGGAATGCTTGGTCCTTGTA+AGG 0.424571 6.1:-2428130 MS.gene82915:intron
TTTGAATTCCCGTGGGATGC+TGG 0.425628 6.1:+2428177 None:intergenic
ATGCAGGTCCCAGGAGCTAC+AGG 0.426026 6.1:-2427351 MS.gene82915:intron
GACTGCACATTGGGATAAAT+GGG 0.426456 6.1:-2429811 MS.gene82915:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 6.1:+2427342 None:intergenic
ACACCGAATTCACGACGAAC+TGG 0.433955 6.1:-2429858 MS.gene82915:CDS
TCTTCTGGCACAAAGTAAGT+TGG 0.439664 6.1:+2427267 None:intergenic
TGCTTCACACCCATTCTCCC+TGG 0.439817 6.1:+2427919 None:intergenic
ATGTGGAATGACTGCACATT+GGG 0.466335 6.1:-2429820 MS.gene82915:CDS
CATAAAACCATGGGATCTAC+AGG 0.470091 6.1:-2428150 MS.gene82915:CDS
CCTCGGTCACTCGAAACTCT+TGG 0.474118 6.1:+2429001 None:intergenic
TCAACCCAAAGAATAGAAAT+CGG 0.483179 6.1:+2429777 None:intergenic
ACCTTTGATTGCTGATCTTG+GGG 0.484493 6.1:-2427223 MS.gene82915:CDS
GGACTCCAACGAACCTTACA+AGG 0.488201 6.1:+2428117 None:intergenic
CTTCTGGCACAAAGTAAGTT+GGG 0.491443 6.1:+2427268 None:intergenic
ACAGGAATCACTAAAGGAAA+AGG 0.499985 6.1:-2428910 MS.gene82915:CDS
AAATCGTGGCAGCGGTGCCA+CGG 0.503916 6.1:+2429935 None:intergenic
ACATTAAGCGATGTACCAAC+AGG 0.508189 6.1:+2428967 None:intergenic
GGAAGGTTATTGTTCTCTCC+AGG 0.513728 6.1:-2429718 MS.gene82915:intron
AATCGTGGCAGCGGTGCCAC+GGG 0.518214 6.1:+2429936 None:intergenic
TTCCTGTGATGTCAATATAC+TGG 0.527980 6.1:+2428926 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 6.1:-2427848 MS.gene82915:intron
AAAGGAAGTATAGATGTGTC+AGG 0.528945 6.1:+2427291 None:intergenic
GAATTCGGTGTCATCACGCT+AGG 0.535765 6.1:+2429870 None:intergenic
ATGGGATCTACAGGAATGCT+TGG 0.536160 6.1:-2428141 MS.gene82915:CDS
AACAGGAAGAAGTGCATCCT+CGG 0.537876 6.1:+2428984 None:intergenic
TGTGATGTCAATATACTGGC+CGG 0.538363 6.1:+2428930 None:intergenic
ATGTGCACAATGCAGGTCCC+AGG 0.546524 6.1:-2427360 MS.gene82915:intron
GACATCACAGGAATCACTAA+AGG 0.546543 6.1:-2428916 MS.gene82915:CDS
AGAAATTTGATGTGGGTGAA+AGG 0.548749 6.1:-2427853 MS.gene82915:CDS
CTCAAGGAGTTCCAATGAAG+AGG 0.550168 6.1:-2429029 MS.gene82915:CDS
CTTTAATCAACAACCATGAA+AGG 0.553514 6.1:+2427192 None:intergenic
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 6.1:+2427343 None:intergenic
TCAAGTCAAAACTCCAGAGA+AGG 0.559481 6.1:-2429739 MS.gene82915:CDS
ACACTTGACAAAGCCTGAAG+TGG 0.560843 6.1:-2429064 MS.gene82915:CDS
TTCAAAAGCACATAAAACCA+TGG 0.565886 6.1:-2428160 MS.gene82915:CDS
AAGCATTCCTGTAGATCCCA+TGG 0.568063 6.1:+2428143 None:intergenic
GCTGGAGGTCCAGCATCCCA+CGG 0.573473 6.1:-2428186 MS.gene82915:CDS
CTGGAGGTCCAGCATCCCAC+GGG 0.585754 6.1:-2428185 MS.gene82915:CDS
GGCCAGTATATTGACATCAC+AGG 0.587654 6.1:-2428928 MS.gene82915:CDS
GTGATGTCAATATACTGGCC+GGG 0.589284 6.1:+2428931 None:intergenic
GTTTCCAGGGTGTGATGACA+CGG 0.597663 6.1:-2428218 MS.gene82915:intron
TCAAAAGCACATAAAACCAT+GGG 0.598380 6.1:-2428159 MS.gene82915:CDS
GGCACAAAGTAAGTTGGGAA+AGG 0.599353 6.1:+2427273 None:intergenic
GAGGATGCACTTCTTCCTGT+TGG 0.601500 6.1:-2428982 MS.gene82915:CDS
ACCTCTCGAAAACGCCAGCA+TGG 0.602437 6.1:+2429983 None:intergenic
TCCCCAAGATCAGCAATCAA+AGG 0.603100 6.1:+2427222 None:intergenic
CACTTGACAAAGCCTGAAGT+GGG 0.609676 6.1:-2429063 MS.gene82915:CDS
CCAGGGTGTGATGACACGGT+GGG 0.611262 6.1:-2428214 MS.gene82915:intron
GTCAAAACTCCAGAGAAGGA+AGG 0.627398 6.1:-2429735 MS.gene82915:CDS
GTGCCACGGGAAATTGTCGA+AGG 0.628893 6.1:+2429949 None:intergenic
TGCAGGTCCCAGGAGCTACA+GGG 0.634216 6.1:-2427350 MS.gene82915:intron
AATGTGGAATGACTGCACAT+TGG 0.638693 6.1:-2429821 MS.gene82915:CDS
GGTCTTGTAGCTGTAAAATG+TGG 0.640499 6.1:-2429837 MS.gene82915:CDS
CCAAGAGTTTCGAGTGACCG+AGG 0.654882 6.1:-2429001 MS.gene82915:CDS
ATCCTGCAAGAAATTTGATG+TGG 0.660543 6.1:-2427861 MS.gene82915:CDS
TCGCCTTCGACAATTTCCCG+TGG 0.673310 6.1:-2429952 MS.gene82915:CDS
TCCTGCAAGAAATTTGATGT+GGG 0.674361 6.1:-2427860 MS.gene82915:CDS
TCCAGGGTGTGATGACACGG+TGG 0.698119 6.1:-2428215 MS.gene82915:intron
ACTGCACATTGGGATAAATG+GGG 0.760426 6.1:-2429810 MS.gene82915:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGTCATTATTTATTATT+TGG - chr6.1:2428563-2428582 MS.gene82915:intron 10.0%
!! ATTCACATTAATTTATAAAA+CGG - chr6.1:2429375-2429394 MS.gene82915:intron 10.0%
!! AAAATTATTATACGTTCATT+TGG + chr6.1:2427651-2427670 None:intergenic 15.0%
!! AAATTTAATAAATTCTTCGA+CGG + chr6.1:2428469-2428488 None:intergenic 15.0%
!! AAATTTGAAAAACTAAATGT+TGG - chr6.1:2428728-2428747 MS.gene82915:intron 15.0%
!! AAGAAAAAATACTAATCTTA+AGG + chr6.1:2429082-2429101 None:intergenic 15.0%
!! AATATATAAAAACAATTACC+TGG + chr6.1:2429348-2429367 None:intergenic 15.0%
!! ATTAATATGGAGATAATATT+CGG - chr6.1:2427892-2427911 MS.gene82915:CDS 15.0%
!! TTCACATTAATTTATAAAAC+GGG - chr6.1:2429376-2429395 MS.gene82915:intron 15.0%
!! TTGTATTTGTAAGATTAAAA+TGG - chr6.1:2428487-2428506 MS.gene82915:intron 15.0%
!! AAAGAACAGTAAAAAATGTA+TGG - chr6.1:2429278-2429297 MS.gene82915:intron 20.0%
!! AAGAACAGTAAAAAATGTAT+GGG - chr6.1:2429279-2429298 MS.gene82915:intron 20.0%
!! ATTGTGCAGAAATATATAAA+TGG + chr6.1:2428606-2428625 None:intergenic 20.0%
!! GATCATTATTTATAAGGAAA+AGG + chr6.1:2428335-2428354 None:intergenic 20.0%
!! TATATTATCATAACAACTGT+CGG + chr6.1:2429196-2429215 None:intergenic 20.0%
!! TGATCATTAACATGATATAA+CGG - chr6.1:2427747-2427766 MS.gene82915:intron 20.0%
!! TTGAAAATATGTTAGATTCA+CGG - chr6.1:2429132-2429151 MS.gene82915:intron 20.0%
!!! AGATTACAATGTACAAATTT+TGG - chr6.1:2427701-2427720 MS.gene82915:intron 20.0%
!!! ATACTTTGTTTTAGTTAGAT+TGG - chr6.1:2428067-2428086 MS.gene82915:intron 20.0%
! AATTCCGATTTCTATTCTTT+GGG - chr6.1:2427394-2427413 MS.gene82915:intron 25.0%
! AGACATAGATCTGTAAAAAA+TGG + chr6.1:2428899-2428918 None:intergenic 25.0%
! ATGAGTAATGAGTTATTAAG+TGG - chr6.1:2427946-2427965 MS.gene82915:intron 25.0%
! ATTTATAAAACGGGAACTAT+AGG - chr6.1:2429385-2429404 MS.gene82915:intron 25.0%
! CATTAACTGGCAAAAATATT+TGG - chr6.1:2429751-2429770 MS.gene82915:CDS 25.0%
! GAGAGAGATCATTATTTATA+AGG + chr6.1:2428341-2428360 None:intergenic 25.0%
! TAGCTTAATTATCCATTAAC+TGG - chr6.1:2429738-2429757 MS.gene82915:CDS 25.0%
! TGAAATTTATCAGGTTAGAT+TGG - chr6.1:2427842-2427861 MS.gene82915:intron 25.0%
! TTATATCATTAAGAGATCGA+TGG - chr6.1:2429684-2429703 MS.gene82915:intron 25.0%
! TTGTAATTCGTATATGACTA+TGG - chr6.1:2428812-2428831 MS.gene82915:intron 25.0%
! TTTATAAAACGGGAACTATA+GGG - chr6.1:2429386-2429405 MS.gene82915:intron 25.0%
!! AAATTATCTTTTCTGTTTCC+AGG - chr6.1:2428943-2428962 MS.gene82915:CDS 25.0%
!! AACTTTGTTTGTCTAAAACT+TGG - chr6.1:2429655-2429674 MS.gene82915:intron 25.0%
!! AATTATCTTTTCTGTTTCCA+GGG - chr6.1:2428944-2428963 MS.gene82915:CDS 25.0%
!! ACTTTGTTTGTCTAAAACTT+GGG - chr6.1:2429656-2429675 MS.gene82915:intron 25.0%
!! ATATATTTCTGCACAATCAT+CGG - chr6.1:2428609-2428628 MS.gene82915:intron 25.0%
!! TACAGTAAAGAAGCATAATA+TGG - chr6.1:2427797-2427816 MS.gene82915:intron 25.0%
!! TGTTTCTAATGAGTTTAATG+TGG - chr6.1:2427513-2427532 MS.gene82915:intron 25.0%
!!! CAAATATTTTTGCCAGTTAA+TGG + chr6.1:2429753-2429772 None:intergenic 25.0%
!!! TATTATTGTTTCTGACCAAT+TGG + chr6.1:2428519-2428538 None:intergenic 25.0%
!!! TTAAAATGGATTACACCAAT+TGG - chr6.1:2428501-2428520 MS.gene82915:intron 25.0%
AGACAAAAAACAAATCACCT+CGG - chr6.1:2429529-2429548 MS.gene82915:intron 30.0%
AGTTATTGTAAGAGTAACTC+TGG + chr6.1:2427983-2428002 None:intergenic 30.0%
ATTATTATACAGACACATGC+AGG + chr6.1:2428389-2428408 None:intergenic 30.0%
CATGATATAACGGTAATATC+AGG - chr6.1:2427757-2427776 MS.gene82915:intron 30.0%
GAATTCCGATTTCTATTCTT+TGG - chr6.1:2427393-2427412 MS.gene82915:intron 30.0%
GTTATTGTAAGAGTAACTCT+GGG + chr6.1:2427982-2428001 None:intergenic 30.0%
TCAACCCAAAGAATAGAAAT+CGG + chr6.1:2427401-2427420 None:intergenic 30.0%
TTAAAGGTAAAAAGATGCCA+GGG - chr6.1:2429239-2429258 MS.gene82915:intron 30.0%
TTATTGCCTGATTTACTCAA+TGG + chr6.1:2428866-2428885 None:intergenic 30.0%
TTTAAAGGTAAAAAGATGCC+AGG - chr6.1:2429238-2429257 MS.gene82915:intron 30.0%
! CTATGTCTTTTCAGTTACAT+GGG - chr6.1:2428911-2428930 MS.gene82915:CDS 30.0%
! TCAAAAGCACATAAAACCAT+GGG - chr6.1:2429016-2429035 MS.gene82915:CDS 30.0%
! TCTATGTCTTTTCAGTTACA+TGG - chr6.1:2428910-2428929 MS.gene82915:CDS 30.0%
! TTCAAAAGCACATAAAACCA+TGG - chr6.1:2429015-2429034 MS.gene82915:CDS 30.0%
!! AGTTTTTCAAATTTCCAGAG+AGG + chr6.1:2428722-2428741 None:intergenic 30.0%
!!! ATATTTTTTCCTCACTGTTC+AGG - chr6.1:2429213-2429232 MS.gene82915:intron 30.0%
!!! TGTTTTAGTTAGATTGGTTG+TGG - chr6.1:2428073-2428092 MS.gene82915:intron 30.0%
!!! TTGGTTTGCATGCTTTTTAA+GGG - chr6.1:2428747-2428766 MS.gene82915:intron 30.0%
AAACCTTTGATTGCTGATCT+TGG - chr6.1:2429950-2429969 MS.gene82915:CDS 35.0%
AACCTTCCATTGAGTAAATC+AGG - chr6.1:2428857-2428876 MS.gene82915:intron 35.0%
AACCTTTGATTGCTGATCTT+GGG - chr6.1:2429951-2429970 MS.gene82915:CDS 35.0%
ACAGGAATCACTAAAGGAAA+AGG - chr6.1:2428265-2428284 MS.gene82915:intron 35.0%
ACATCCGAACTAAAAAATCG+TGG + chr6.1:2427257-2427276 None:intergenic 35.0%
ACCAAGTGATTAAACCAAAC+TGG - chr6.1:2429440-2429459 MS.gene82915:intron 35.0%
ACGGTAATATCAGGTTAGAT+TGG - chr6.1:2427766-2427785 MS.gene82915:intron 35.0%
ACTCAGTTCATAGTTACTCA+TGG - chr6.1:2427540-2427559 MS.gene82915:intron 35.0%
AGAAATTTGATGTGGGTGAA+AGG - chr6.1:2429322-2429341 MS.gene82915:intron 35.0%
ATCCTGCAAGAAATTTGATG+TGG - chr6.1:2429314-2429333 MS.gene82915:intron 35.0%
CATCTTGCATGTACAAGTTA+AGG - chr6.1:2428652-2428671 MS.gene82915:intron 35.0%
CCACTTAATTTACACTTGCA+CGG - chr6.1:2429601-2429620 MS.gene82915:intron 35.0%
CTCGATTGGTGAAATTTATC+AGG - chr6.1:2427833-2427852 MS.gene82915:intron 35.0%
GAACTATCTTATATCACCTC+AGG - chr6.1:2429412-2429431 MS.gene82915:intron 35.0%
GAGATAATATTCTGCTCGAT+TGG - chr6.1:2427819-2427838 MS.gene82915:intron 35.0%
GATGAGAAGTAAATAGTGTG+AGG + chr6.1:2428311-2428330 None:intergenic 35.0%
TCCTGCAAGAAATTTGATGT+GGG - chr6.1:2429315-2429334 MS.gene82915:intron 35.0%
TTCCTGTGATGTCAATATAC+TGG + chr6.1:2428252-2428271 None:intergenic 35.0%
! AAAGGAAGTATAGATGTGTC+AGG + chr6.1:2429887-2429906 None:intergenic 35.0%
! ACCAGTTTGGTTTAATCACT+TGG + chr6.1:2429444-2429463 None:intergenic 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG - chr6.1:2428273-2428292 MS.gene82915:intron 35.0%
! CTTTAAAAACCTGAACAGTG+AGG + chr6.1:2429225-2429244 None:intergenic 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG - chr6.1:2429223-2429242 MS.gene82915:intron 35.0%
!! TGGTTTGCATGCTTTTTAAG+GGG - chr6.1:2428748-2428767 MS.gene82915:intron 35.0%
!!! ACGATTTTTTAGTTCGGATG+TGG - chr6.1:2427256-2427275 MS.gene82915:CDS 35.0%
!!! GTTGGTTTGCATGCTTTTTA+AGG - chr6.1:2428746-2428765 MS.gene82915:intron 35.0%
AAAAAGATGCCAGGGAGAAT+GGG - chr6.1:2429247-2429266 MS.gene82915:intron 40.0%
AATGTGGAATGACTGCACAT+TGG - chr6.1:2427354-2427373 MS.gene82915:intron 40.0%
ACATTAAGCGATGTACCAAC+AGG + chr6.1:2428211-2428230 None:intergenic 40.0%
ACCCACATCAAATTTCTTGC+AGG + chr6.1:2429319-2429338 None:intergenic 40.0%
ACCTTTGATTGCTGATCTTG+GGG - chr6.1:2429952-2429971 MS.gene82915:CDS 40.0%
ACTGCACATTGGGATAAATG+GGG - chr6.1:2427365-2427384 MS.gene82915:intron 40.0%
AGGAAGCTCATTAACCAGTT+TGG + chr6.1:2429457-2429476 None:intergenic 40.0%
ATGTGGAATGACTGCACATT+GGG - chr6.1:2427355-2427374 MS.gene82915:intron 40.0%
CATAAAACCATGGGATCTAC+AGG - chr6.1:2429025-2429044 MS.gene82915:CDS 40.0%
CCAGAGAGGACAAGTAAAAT+GGG + chr6.1:2428708-2428727 None:intergenic 40.0%
CCGTGCAAGTGTAAATTAAG+TGG + chr6.1:2429604-2429623 None:intergenic 40.0%
CTTCTGGCACAAAGTAAGTT+GGG + chr6.1:2429910-2429929 None:intergenic 40.0%
GAACAATAACCTTCCTTCTC+TGG + chr6.1:2427452-2427471 None:intergenic 40.0%
GAACTAAAAAATCGTGGCAG+CGG + chr6.1:2427251-2427270 None:intergenic 40.0%
GACATCACAGGAATCACTAA+AGG - chr6.1:2428259-2428278 MS.gene82915:intron 40.0%
GACTGCACATTGGGATAAAT+GGG - chr6.1:2427364-2427383 MS.gene82915:intron 40.0%
TAAAAAGATGCCAGGGAGAA+TGG - chr6.1:2429246-2429265 MS.gene82915:intron 40.0%
TCAAGTCAAAACTCCAGAGA+AGG - chr6.1:2427436-2427455 MS.gene82915:intron 40.0%
TCATCAGCATCTTCATCTTC+TGG + chr6.1:2429926-2429945 None:intergenic 40.0%
TCCAGAGAGGACAAGTAAAA+TGG + chr6.1:2428709-2428728 None:intergenic 40.0%
TCTTCTGGCACAAAGTAAGT+TGG + chr6.1:2429911-2429930 None:intergenic 40.0%
TGACTGCACATTGGGATAAA+TGG - chr6.1:2427363-2427382 MS.gene82915:intron 40.0%
TGCCTGATTTACTCAATGGA+AGG + chr6.1:2428862-2428881 None:intergenic 40.0%
TGTGATGTCAATATACTGGC+CGG + chr6.1:2428248-2428267 None:intergenic 40.0%
TTGTATGATGTGCACAATGC+AGG - chr6.1:2429808-2429827 MS.gene82915:CDS 40.0%
! ATGTGCTTTTGAATTCCCGT+GGG + chr6.1:2429008-2429027 None:intergenic 40.0%
! GAGATAATATTCGGCTCGAT+TGG - chr6.1:2427901-2427920 MS.gene82915:CDS 40.0%
! GGTCTTGTAGCTGTAAAATG+TGG - chr6.1:2427338-2427357 MS.gene82915:CDS 40.0%
! TATGTGCTTTTGAATTCCCG+TGG + chr6.1:2429009-2429028 None:intergenic 40.0%
!! AATCACTTGGTTTTTGCCTG+AGG + chr6.1:2429431-2429450 None:intergenic 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG - chr6.1:2428226-2428245 MS.gene82915:intron 40.0%
!! CTTTTCCTCTAGGAATAGGA+GGG - chr6.1:2429503-2429522 MS.gene82915:intron 40.0%
!! TGTCCTTTTCCTCTAGGAAT+AGG - chr6.1:2429499-2429518 MS.gene82915:intron 40.0%
!! TTTGCATGCTTTTTAAGGGG+TGG - chr6.1:2428751-2428770 MS.gene82915:intron 40.0%
!!! GCTGCCACGATTTTTTAGTT+CGG - chr6.1:2427250-2427269 MS.gene82915:CDS 40.0%
AAGCATTCCTGTAGATCCCA+TGG + chr6.1:2429035-2429054 None:intergenic 45.0%
ACACTTGACAAAGCCTGAAG+TGG - chr6.1:2428111-2428130 MS.gene82915:intron 45.0%
AGACCAGTTCGTCGTGAATT+CGG + chr6.1:2427323-2427342 None:intergenic 45.0%
AGGAATGCTTGGTCCTTGTA+AGG - chr6.1:2429045-2429064 MS.gene82915:CDS 45.0%
ATAATGAAGCAGAACGCACC+TGG + chr6.1:2427478-2427497 None:intergenic 45.0%
ATGGGATCTACAGGAATGCT+TGG - chr6.1:2429034-2429053 MS.gene82915:CDS 45.0%
CACTTGACAAAGCCTGAAGT+GGG - chr6.1:2428112-2428131 MS.gene82915:intron 45.0%
CATTCATAGACAAGTGTCCG+AGG + chr6.1:2429549-2429568 None:intergenic 45.0%
CCTCCTATTCCTAGAGGAAA+AGG + chr6.1:2429505-2429524 None:intergenic 45.0%
CTAAACCCTCCTATTCCTAG+AGG + chr6.1:2429511-2429530 None:intergenic 45.0%
CTCAAGGAGTTCCAATGAAG+AGG - chr6.1:2428146-2428165 MS.gene82915:CDS 45.0%
GACACTGATCATCTCGAGTT+CGG + chr6.1:2429483-2429502 None:intergenic 45.0%
GGAAGGTTATTGTTCTCTCC+AGG - chr6.1:2427457-2427476 MS.gene82915:intron 45.0%
GGCCAGTATATTGACATCAC+AGG - chr6.1:2428247-2428266 MS.gene82915:intron 45.0%
GTCAAAACTCCAGAGAAGGA+AGG - chr6.1:2427440-2427459 MS.gene82915:intron 45.0%
GTGATGTCAATATACTGGCC+GGG + chr6.1:2428247-2428266 None:intergenic 45.0%
GTGCGTTCTGCTTCATTATC+AGG - chr6.1:2427479-2427498 MS.gene82915:intron 45.0%
GTTCGGATGTGGAGACTATA+CGG - chr6.1:2427267-2427286 MS.gene82915:CDS 45.0%
TAAAACGGGAACTATAGGGC+AGG - chr6.1:2429390-2429409 MS.gene82915:intron 45.0%
TATACTGGCCGGGAACAAAA+TGG + chr6.1:2428237-2428256 None:intergenic 45.0%
TCCCCAAGATCAGCAATCAA+AGG + chr6.1:2429956-2429975 None:intergenic 45.0%
TCTTGGAGCTTCCTCTTCAT+TGG + chr6.1:2428160-2428179 None:intergenic 45.0%
TGGGGATGTTGATCCTTTCA+TGG - chr6.1:2429970-2429989 MS.gene82915:CDS 45.0%
TTGGTCCTTGTAAGGTTCGT+TGG - chr6.1:2429053-2429072 MS.gene82915:CDS 45.0%
! AACAGGAAGAAGTGCATCCT+CGG + chr6.1:2428194-2428213 None:intergenic 45.0%
! CCCATTTTACTTGTCCTCTC+TGG - chr6.1:2428705-2428724 MS.gene82915:intron 45.0%
! GATCAGTGTCCTTTTCCTCT+AGG - chr6.1:2429493-2429512 MS.gene82915:intron 45.0%
! GATTGGTTGTGGACAGAAGA+AGG - chr6.1:2428084-2428103 MS.gene82915:intron 45.0%
! GGCACAAAGTAAGTTGGGAA+AGG + chr6.1:2429905-2429924 None:intergenic 45.0%
!! AGCCTGAAGTGGGTCATTTT+AGG - chr6.1:2428122-2428141 MS.gene82915:intron 45.0%
!! CCTTTTCCTCTAGGAATAGG+AGG - chr6.1:2429502-2429521 MS.gene82915:intron 45.0%
!! GCCTGAAGTGGGTCATTTTA+GGG - chr6.1:2428123-2428142 MS.gene82915:intron 45.0%
!! AAAAAAACATAATATTAATA+TGG - chr6.1:2427879-2427898 MS.gene82915:CDS 5.0%
ACAAAGTTCCCTGTAGCTCC+TGG + chr6.1:2429836-2429855 None:intergenic 50.0%
ACACCGAATTCACGACGAAC+TGG - chr6.1:2427317-2427336 MS.gene82915:CDS 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG + chr6.1:2429835-2429854 None:intergenic 50.0%
GAGGATGCACTTCTTCCTGT+TGG - chr6.1:2428193-2428212 MS.gene82915:CDS 50.0%
GATCATCTCGAGTTCGGCAA+AGG + chr6.1:2429477-2429496 None:intergenic 50.0%
GCCCTAAAATGACCCACTTC+AGG + chr6.1:2428127-2428146 None:intergenic 50.0%
GGACTCCAACGAACCTTACA+AGG + chr6.1:2429061-2429080 None:intergenic 50.0%
GTTTCCAGGGTGTGATGACA+CGG - chr6.1:2428957-2428976 MS.gene82915:CDS 50.0%
TTTGAATTCCCGTGGGATGC+TGG + chr6.1:2429001-2429020 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG - chr6.1:2429327-2429346 MS.gene82915:intron 50.0%
! ATGACACGGTGGGATTTTGC+TGG - chr6.1:2428971-2428990 MS.gene82915:CDS 50.0%
!! GAATTCGGTGTCATCACGCT+AGG + chr6.1:2427308-2427327 None:intergenic 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG - chr6.1:2428130-2428149 MS.gene82915:intron 50.0%
ATGTGCACAATGCAGGTCCC+AGG - chr6.1:2429815-2429834 MS.gene82915:CDS 55.0%
CCTCGGTCACTCGAAACTCT+TGG + chr6.1:2428177-2428196 None:intergenic 55.0%
GTGCCACGGGAAATTGTCGA+AGG + chr6.1:2427229-2427248 None:intergenic 55.0%
TCGCCTTCGACAATTTCCCG+TGG - chr6.1:2427223-2427242 MS.gene82915:CDS 55.0%
TGCTTCACACCCATTCTCCC+TGG + chr6.1:2429259-2429278 None:intergenic 55.0%
! ACACGGTGGGATTTTGCTGG+AGG - chr6.1:2428974-2428993 MS.gene82915:CDS 55.0%
! CCAAGAGTTTCGAGTGACCG+AGG - chr6.1:2428174-2428193 MS.gene82915:CDS 55.0%
ATGCAGGTCCCAGGAGCTAC+AGG - chr6.1:2429824-2429843 MS.gene82915:CDS 60.0%
CCAGGGTGTGATGACACGGT+GGG - chr6.1:2428961-2428980 MS.gene82915:CDS 60.0%
TCCAGGGTGTGATGACACGG+TGG - chr6.1:2428960-2428979 MS.gene82915:CDS 60.0%
TGCAGGTCCCAGGAGCTACA+GGG - chr6.1:2429825-2429844 MS.gene82915:CDS 60.0%
! AAATCGTGGCAGCGGTGCCA+CGG + chr6.1:2427243-2427262 None:intergenic 60.0%
CCCACCGTGTCATCACACCC+TGG + chr6.1:2428964-2428983 None:intergenic 65.0%
CTGGAGGTCCAGCATCCCAC+GGG - chr6.1:2428990-2429009 MS.gene82915:CDS 65.0%
GCTGGAGGTCCAGCATCCCA+CGG - chr6.1:2428989-2429008 MS.gene82915:CDS 65.0%
!! AATCGTGGCAGCGGTGCCAC+GGG + chr6.1:2427242-2427261 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 2427194 2430003 2427194 ID=MS.gene82915
chr6.1 mRNA 2427194 2430003 2427194 ID=MS.gene82915.t1;Parent=MS.gene82915
chr6.1 exon 2429719 2430003 2429719 ID=MS.gene82915.t1.exon1;Parent=MS.gene82915.t1
chr6.1 CDS 2429719 2430003 2429719 ID=cds.MS.gene82915.t1;Parent=MS.gene82915.t1
chr6.1 exon 2428903 2429112 2428903 ID=MS.gene82915.t1.exon2;Parent=MS.gene82915.t1
chr6.1 CDS 2428903 2429112 2428903 ID=cds.MS.gene82915.t1;Parent=MS.gene82915.t1
chr6.1 exon 2428131 2428232 2428131 ID=MS.gene82915.t1.exon3;Parent=MS.gene82915.t1
chr6.1 CDS 2428131 2428232 2428131 ID=cds.MS.gene82915.t1;Parent=MS.gene82915.t1
chr6.1 exon 2427849 2427962 2427849 ID=MS.gene82915.t1.exon4;Parent=MS.gene82915.t1
chr6.1 CDS 2427849 2427962 2427849 ID=cds.MS.gene82915.t1;Parent=MS.gene82915.t1
chr6.1 exon 2427194 2427367 2427194 ID=MS.gene82915.t1.exon5;Parent=MS.gene82915.t1
chr6.1 CDS 2427194 2427367 2427194 ID=cds.MS.gene82915.t1;Parent=MS.gene82915.t1
Gene Sequence

>MS.gene82915

ATGCTGGCGTTTTCGAGAGGTGTAGTTTCTCGCCTTCGACAATTTCCCGTGGCACCGCTGCCACGATTTTTTAGTTCGGATGTGGAGACTATACGGACGATTGAAGCAAAACCTAGCGTGATGACACCGAATTCACGACGAACTGGTCTTGTAGCTGTAAAATGTGGAATGACTGCACATTGGGATAAATGGGGTGCTAGAATTCCGATTTCTATTCTTTGGGTTGATGACAACATTGTCTCTCAAGTCAAAACTCCAGAGAAGGAAGGTTATTGTTCTCTCCAGGTGCGTTCTGCTTCATTATCAGGATCAAATTCAATGTTTCTAATGAGTTTAATGTGGATTAACTCAGTTCATAGTTACTCATGGAATAACTTAATCTAATGCAGTTTAAATTTCTTTCGAAAATTTGTGTAGAAGAAATTAAAACTGTTTGATACTTTATTAAAGAACTCCAAATGAACGTATAATAATTTTTTTTTTAAATGTAAATAAACATCAACTGTTAGATTACAATGTACAAATTTTGGATTTATATGAAACTTTGTGTGCTTGATCATTAACATGATATAACGGTAATATCAGGTTAGATTGGTGAAATAATACAGTAAAGAAGCATAATATGGAGATAATATTCTGCTCGATTGGTGAAATTTATCAGGTTAGATTGGTGAAATAATACAGTAAAAAAACATAATATTAATATGGAGATAATATTCGGCTCGATTGGTGAAATTTAATGTTTATAATGAATGAGTAATGAGTTATTAAGTGGAGTTATTCAGCCCAGAGTTACTCTTACAATAACTTGAATTGTCTTCTCTATATATATGTATATGAAGTTAAATATGTATCTAATTATAGACATGTTTGATACTTTGTTTTAGTTAGATTGGTTGTGGACAGAAGAAGGAGAAACACTTGACAAAGCCTGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCAATGAAGAGGAAGCTCCAAGAGTTTCGAGTGACCGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGCCAGTATATTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGTATTTTTCTTTACCTCACACTATTTACTTCTCATCTCCTTTTCCTTATAAATAATGATCTCTCTCTTACATTCAGTATGTAGTATTTGTTCCTGCATGTGTCTGTATAATAATAGTTGAGTTTAATGCATTGTGTTCTTTGTTTGTTTGTTGACATGATTAGTTATTATTCCGTCGAAGAATTTATTAAATTTGTATTTGTAAGATTAAAATGGATTACACCAATTGGTCAGAAACAATAATAAGTTGACAGATTCAAACATGTATTATATGTCATTATTTATTATTTGGTTAATTGTTTTGTTTCACCATTTATATATTTCTGCACAATCATCGGTGTTCAGTAGTTTCAACTTTCATCTTGCATGTACAAGTTAAGGTAACGTTGCAGCTTTATTCTTTTCTCTCGTCCCATTTTACTTGTCCTCTCTGGAAATTTGAAAAACTAAATGTTGGTTTGCATGCTTTTTAAGGGGTGGTTTATTGTTTATTTTTCTGTTTCTGTTTCTTATTTTAATTGTAATTCGTATATGACTATGGATACTTCTCTGTTTCATGTTGAAACCTTCCATTGAGTAAATCAGGCAATAACATGATACTACCATTTTTTACAGATCTATGTCTTTTCAGTTACATGGGTGTTGTTTTAAATTATCTTTTCTGTTTCCAGGGTGTGATGACACGGTGGGATTTTGCTGGAGGTCCAGCATCCCACGGGAATTCAAAAGCACATAAAACCATGGGATCTACAGGAATGCTTGGTCCTTGTAAGGTTCGTTGGAGTCCTTAAGATTAGTATTTTTTCTTAATTAATACAGCTTTCTGTATTTGTATATATTGAAAATATGTTAGATTCACGGTCTATACAAGTTTCTTTTCTTTACATTAATGTTTCTCACCGACAGTTGTTATGATAATATATTTTTTCCTCACTGTTCAGGTTTTTAAAGGTAAAAAGATGCCAGGGAGAATGGGTGTGAAGCAAAGAACAGTAAAAAATGTATGGGTCTACAAAATCGATCCTGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTAATTGTTTTTATATATTTATTATTATTCACATTAATTTATAAAACGGGAACTATAGGGCAGGAACTATCTTATATCACCTCAGGCAAAAACCAAGTGATTAAACCAAACTGGTTAATGAGCTTCCTTTGCCGAACTCGAGATGATCAGTGTCCTTTTCCTCTAGGAATAGGAGGGTTTAGACAAAAAACAAATCACCTCGGACACTTGTCTATGAATGATTTTAAATTTGCATTAAATTTGAATTGAATTCCACTTAATTTACACTTGCACGGCTAGTATAGAAACTGTCTGTATGAGCTACGAAACTTTGTTTGTCTAAAACTTGGGAGTAATTATATCATTAAGAGATCGATGGTGCATCAGTAATAGTTTTGTATCTATTTTAATAGCTTAATTATCCATTAACTGGCAAAAATATTTGGAATCTCAGCTTTATCGATGACTGCTTATTTCTCTTTGTATGATGTGCACAATGCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTCTATGAAAAACCTGACACATCTATACTTCCTTTCCCAACTTACTTTGTGCCAGAAGATGAAGATGCTGATGATATGAAACCTTTGATTGCTGATCTTGGGGATGTTGATCCTTTCATGGTTGTTGATTAA
Protein sequence

>MS.gene82915.t1

MLAFSRGVVSRLRQFPVAPLPRFFSSDVETIRTIEAKPSVMTPNSRRTGLVAVKCGMTAHWDKWGARIPISILWVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYIDITGITKGKGFQGVMTRWDFAGGPASHGNSKAHKTMGSTGMLGPCKVFKGKKMPGRMGVKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPDTSILPFPTYFVPEDEDADDMKPLIADLGDVDPFMVVD