AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene028903

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028903.t1 MTR_1g093060 93.197 294 20 0 1 294 54 347 0.0 571
MS.gene028903.t1 MTR_6g006970 92.517 294 22 0 1 294 1 294 0.0 570
MS.gene028903.t1 MTR_2g090370 97.115 104 3 0 189 292 1 104 9.17e-71 219
MS.gene028903.t1 MTR_3g118210 42.029 207 114 6 49 251 58 262 1.34e-43 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene028903.t1 AT3G17465 65.432 324 82 4 1 294 1 324 3.37e-144 408
MS.gene028903.t1 AT2G43030 40.097 207 118 6 49 251 57 261 1.49e-39 139

Find 87 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGGATGTGGATCCATTTA+TGG 0.158517 2.3:+10144485 MS.gene028903:CDS
TGACTGCACTTTGGGATAAA+TGG 0.171985 2.3:+10142265 MS.gene028903:CDS
CTTTAATCAGTAACCATAAA+TGG 0.233502 2.3:-10144498 None:intergenic
GAGTTCCAATTTCTATCCTT+TGG 0.251026 2.3:+10142295 MS.gene028903:CDS
AGTTCCAATTTCTATCCTTT+GGG 0.317691 2.3:+10142296 MS.gene028903:CDS
CATAGAACCATGGGTTCTTC+AGG 0.322897 2.3:+10143490 MS.gene028903:CDS
CTCCTGAAGCTTCCTCTTCA+TGG 0.339965 2.3:-10142593 None:intergenic
TCAACCCAAAGGATAGAAAT+TGG 0.341302 2.3:-10142300 None:intergenic
AACCGTGGCAGCGGCGCCAC+AGG 0.342434 2.3:-10142141 None:intergenic
ACCCACATCAAATTTCTTGC+TGG 0.343726 2.3:-10143774 None:intergenic
TCATCTGTATCTTCATCTTC+TGG 0.348247 2.3:-10144438 None:intergenic
AAACCTCTGGTTGCTGATCT+TGG 0.349915 2.3:+10144465 MS.gene028903:CDS
CATACTGTCCGGGAACAAAA+TGG 0.364379 2.3:-10142669 None:intergenic
ACACCAGTTCGTTGTGAATT+CGG 0.366761 2.3:-10142222 None:intergenic
AACCTCTGGTTGCTGATCTT+GGG 0.368580 2.3:+10144466 MS.gene028903:CDS
GCCCTAAAATGACCCACTTC+AGG 0.379527 2.3:-10142559 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 2.3:+10142519 MS.gene028903:intron
CTTCTGTTTACAGGGTGTAA+TGG 0.384171 2.3:+10143417 MS.gene028903:intron
AGGAATGCTTGGTCCTTGTA+AGG 0.397571 2.3:+10143510 MS.gene028903:CDS
TCCCATGAAGAGGAAGCTTC+AGG 0.402123 2.3:+10142591 MS.gene028903:CDS
GAACAATAGCCTTCCTTCTC+AGG 0.410835 2.3:-10142351 None:intergenic
ATGTGGAATGACTGCACTTT+GGG 0.413998 2.3:+10142257 MS.gene028903:CDS
ATGCAGGTCCCAGGAGCTAC+AGG 0.423543 2.3:+10144339 MS.gene028903:intron
GACTGCACTTTGGGATAAAT+GGG 0.426337 2.3:+10142266 MS.gene028903:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 2.3:-10144348 None:intergenic
TCTTCTGGCACAAAGTAAGT+TGG 0.439664 2.3:-10144423 None:intergenic
GTTCCGATGTGGAGACTATA+CGG 0.439854 2.3:+10142169 MS.gene028903:CDS
TCCCTGTGGCGCCGCTGCCA+CGG 0.446464 2.3:+10142139 MS.gene028903:CDS
GAGGTTTGGTTTCTCGTCTA+CGG 0.451077 2.3:+10142112 MS.gene028903:CDS
GGTTGCTGATCTTGGGGATG+TGG 0.454818 2.3:+10144473 MS.gene028903:CDS
AATGGACCGGTATGATTTCA+AGG 0.462175 2.3:+10143435 MS.gene028903:CDS
TGATGACAACATTGTCTCTC+AGG 0.468175 2.3:+10142320 MS.gene028903:CDS
AGAAATTTGATGTGGGTGAA+AGG 0.489286 2.3:+10143780 MS.gene028903:CDS
CTTCTGGCACAAAGTAAGTT+GGG 0.491443 2.3:-10144422 None:intergenic
ACCTCTGGTTGCTGATCTTG+GGG 0.494514 2.3:+10144467 MS.gene028903:CDS
ACAGGAATCACTAAAGGAAA+AGG 0.499985 2.3:+10142700 MS.gene028903:CDS
GGACTCCATCCAACCTTACA+AGG 0.504118 2.3:-10143523 None:intergenic
ATGGGTTCTTCAGGAATGCT+TGG 0.507345 2.3:+10143499 MS.gene028903:CDS
ACATTAAGCGATGTACCAAC+AGG 0.508189 2.3:-10142643 None:intergenic
TGTGATGTCAACATACTGTC+CGG 0.509894 2.3:-10142680 None:intergenic
TATGTGCTTTCGAATTCCCA+TGG 0.513084 2.3:-10143471 None:intergenic
ACTCCGAATTCACAACGAAC+TGG 0.518796 2.3:+10142219 MS.gene028903:CDS
TCCTGAAGCTTCCTCTTCAT+GGG 0.524646 2.3:-10142592 None:intergenic
TGCTTCCCACCCATTCTCCC+CGG 0.526048 2.3:-10143714 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 2.3:+10143785 MS.gene028903:CDS
GGAAGGCTATTGTTCTCTCC+AGG 0.530451 2.3:+10142359 MS.gene028903:CDS
AAAATGCCGGGGAGAATGGG+TGG 0.532086 2.3:+10143708 MS.gene028903:CDS
AAAGGAAGTATAGATGTCTC+AGG 0.543480 2.3:-10144399 None:intergenic
TACAGATGATATGAAACCTC+TGG 0.545460 2.3:+10144452 MS.gene028903:CDS
GACATCACAGGAATCACTAA+AGG 0.546953 2.3:+10142694 MS.gene028903:CDS
GAGGATGCACTTCTTCCTGT+TGG 0.552055 2.3:+10142628 MS.gene028903:CDS
CTCAAGGAGTTCCCATGAAG+AGG 0.552464 2.3:+10142581 MS.gene028903:CDS
ACCTCTCGAAAACGCTAGCA+TGG 0.553344 2.3:-10142094 None:intergenic
GTTTACAGGGTGTAATGGAC+CGG 0.553779 2.3:+10143422 MS.gene028903:intron
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 2.3:-10144347 None:intergenic
AAGGGAGGTTCAGCATCCCA+TGG 0.557581 2.3:+10143454 MS.gene028903:CDS
ATGTGCACTATGCAGGTCCC+AGG 0.560952 2.3:+10144330 MS.gene028903:intron
AATGTGGAATGACTGCACTT+TGG 0.562248 2.3:+10142256 MS.gene028903:CDS
GAATTCGGAGTCATCACGCT+AGG 0.563255 2.3:-10142207 None:intergenic
TCAGGTCAAAACTCCTGAGA+AGG 0.567631 2.3:+10142338 MS.gene028903:CDS
ATGTGCTTTCGAATTCCCAT+GGG 0.571228 2.3:-10143470 None:intergenic
ACCGTGGCAGCGGCGCCACA+GGG 0.575605 2.3:-10142140 None:intergenic
ACACTCGACAAAGCCTGAAG+TGG 0.575978 2.3:+10142546 MS.gene028903:CDS
CACTCGACAAAGCCTGAAGT+GGG 0.584112 2.3:+10142547 MS.gene028903:CDS
AACCTCCCTTGAAATCATAC+CGG 0.585348 2.3:-10143441 None:intergenic
TCAGGAGTTTCGAGTGACAG+AGG 0.587986 2.3:+10142609 MS.gene028903:CDS
GTGATGTCAACATACTGTCC+GGG 0.588163 2.3:-10142679 None:intergenic
GGCACAAAGTAAGTTGGGAA+AGG 0.599353 2.3:-10144417 None:intergenic
GACCGGTATGATTTCAAGGG+AGG 0.601360 2.3:+10143439 MS.gene028903:CDS
TCGAAAGCACATAGAACCAT+GGG 0.605881 2.3:+10143481 MS.gene028903:CDS
GGACAGTATGTTGACATCAC+AGG 0.614169 2.3:+10142682 MS.gene028903:CDS
AAATGCCGGGGAGAATGGGT+GGG 0.614539 2.3:+10143709 MS.gene028903:CDS
AGGGAGGTTCAGCATCCCAT+GGG 0.616692 2.3:+10143455 MS.gene028903:CDS
GTCAAAACTCCTGAGAAGGA+AGG 0.621009 2.3:+10142342 MS.gene028903:CDS
ATCCAGCAAGAAATTTGATG+TGG 0.622717 2.3:+10143772 MS.gene028903:CDS
TTCGAAAGCACATAGAACCA+TGG 0.623227 2.3:+10143480 MS.gene028903:CDS
AAGCATTCCTGAAGAACCCA+TGG 0.626684 2.3:-10143497 None:intergenic
TGCAGGTCCCAGGAGCTACA+GGG 0.631734 2.3:+10144340 MS.gene028903:intron
ATGGACCGGTATGATTTCAA+GGG 0.635642 2.3:+10143436 MS.gene028903:CDS
GGTGTTATAGCTGTGAAATG+TGG 0.646450 2.3:+10142240 MS.gene028903:CDS
CAATGTTGTCATCAACCCAA+AGG 0.648583 2.3:-10142311 None:intergenic
TCGTCTACGGCAATTCCCTG+TGG 0.664672 2.3:+10142125 MS.gene028903:CDS
TCCAGCAAGAAATTTGATGT+GGG 0.677547 2.3:+10143773 MS.gene028903:CDS
TCCCCAAGATCAGCAACCAG+AGG 0.694021 2.3:-10144468 None:intergenic
CCTCCGTATAGTCTCCACAT+CGG 0.724147 2.3:-10142172 None:intergenic
ACTGCACTTTGGGATAAATG+GGG 0.757943 2.3:+10142267 MS.gene028903:CDS
CCGATGTGGAGACTATACGG+AGG 0.775451 2.3:+10142172 MS.gene028903:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTAAATTTATATTTAT+AGG + chr2.3:10142909-10142928 MS.gene028903:intron 0.0%
!! ATATTAAAATAGATACAAAA+TGG - chr2.3:10144228-10144247 None:intergenic 10.0%
!! AAATATATTATCACAACTAT+AGG - chr2.3:10143658-10143677 None:intergenic 15.0%
!! AAGAAAAAATACTAATCTAA+AGG - chr2.3:10143547-10143566 None:intergenic 15.0%
!! GTTTATAATGAATTATTAAG+CGG + chr2.3:10142417-10142436 MS.gene028903:intron 15.0%
!! AAAATATCAACTAAGATAGT+TGG + chr2.3:10144060-10144079 MS.gene028903:intron 20.0%
!! AAAGAACAGTAAAAAATGTA+TGG + chr2.3:10143736-10143755 MS.gene028903:CDS 20.0%
!! AAATCGTATATAAAATTACC+TGG - chr2.3:10143806-10143825 None:intergenic 20.0%
!! AAGAACAGTAAAAAATGTAT+GGG + chr2.3:10143737-10143756 MS.gene028903:CDS 20.0%
!! ACAATTGAACAAATAAATAG+TGG - chr2.3:10143066-10143085 None:intergenic 20.0%
!! AGGTAAATAAAATTTGAATG+AGG - chr2.3:10143980-10143999 None:intergenic 20.0%
!! ATTTATAAAATTGCAGCTAT+AGG + chr2.3:10143822-10143841 MS.gene028903:intron 20.0%
!!! ACATGTTTGATATTTTGTTT+TGG + chr2.3:10142493-10142512 MS.gene028903:intron 20.0%
!!! ATATTTTGTTTTGGTTAGAT+TGG + chr2.3:10142502-10142521 MS.gene028903:intron 20.0%
!!! ATTCAAATTTTATTTACCTC+TGG + chr2.3:10143981-10144000 MS.gene028903:intron 20.0%
!!! CTATCTTAGTTGATATTTTT+TGG - chr2.3:10144059-10144078 None:intergenic 20.0%
!!! TTTCCGATTTATTTACTTTT+GGG + chr2.3:10143090-10143109 MS.gene028903:intron 20.0%
!!! TTTTAAAGGTAAAAAAATGC+CGG + chr2.3:10143695-10143714 MS.gene028903:CDS 20.0%
! CAAATTATCTTCTGTTTACA+GGG + chr2.3:10143409-10143428 MS.gene028903:intron 25.0%
! GAACTTAAAAATATACACGA+GGG - chr2.3:10142454-10142473 None:intergenic 25.0%
! GCCACTTATTTATTAATAAC+TGG + chr2.3:10144248-10144267 MS.gene028903:intron 25.0%
! GCCAGTTATTAATAAATAAG+TGG - chr2.3:10144252-10144271 None:intergenic 25.0%
! TAATAACTGGCCAAAATATT+TGG + chr2.3:10144261-10144280 MS.gene028903:intron 25.0%
! TCAAATTATCTTCTGTTTAC+AGG + chr2.3:10143408-10143427 MS.gene028903:intron 25.0%
! TGAACTTAAAAATATACACG+AGG - chr2.3:10142455-10142474 None:intergenic 25.0%
! TTATAATCCATGTATGACTT+CGG + chr2.3:10143280-10143299 MS.gene028903:intron 25.0%
! TTTAAAGGTAAAAAAATGCC+GGG + chr2.3:10143696-10143715 MS.gene028903:CDS 25.0%
!! AATGAGAAGTATATAGTATG+AGG - chr2.3:10142748-10142767 None:intergenic 25.0%
!! ATGAGAAGTATATAGTATGA+GGG - chr2.3:10142747-10142766 None:intergenic 25.0%
!! GTTTCCGATTTATTTACTTT+TGG + chr2.3:10143089-10143108 MS.gene028903:intron 25.0%
AGGACATAGATCTGTAAAAA+TGG - chr2.3:10143367-10143386 None:intergenic 30.0%
AGTATTATATAGACACAAGC+AGG - chr2.3:10142849-10142868 None:intergenic 30.0%
AGTTCCAATTTCTATCCTTT+GGG + chr2.3:10142296-10142315 MS.gene028903:CDS 30.0%
ATCCCAATTATGTAATCAAC+TGG - chr2.3:10142978-10142997 None:intergenic 30.0%
ATTTGAATGAGGATTGTTTC+AGG - chr2.3:10143969-10143988 None:intergenic 30.0%
CGATATCATTAAGAAAACGA+TGG + chr2.3:10144191-10144210 MS.gene028903:intron 30.0%
TACTGCAATGTGAATTAAGT+GGG - chr2.3:10144120-10144139 None:intergenic 30.0%
TCGCCCAAAAGTAAATAAAT+CGG - chr2.3:10143096-10143115 None:intergenic 30.0%
TTAAAGGTAAAAAAATGCCG+GGG + chr2.3:10143697-10143716 MS.gene028903:CDS 30.0%
TTAACAGTCATGTAACTGAA+AGG - chr2.3:10143387-10143406 None:intergenic 30.0%
! AAGTATCCGAGTTTAAAACA+TGG + chr2.3:10143936-10143955 MS.gene028903:intron 30.0%
! AGCCAACATTCCAAATATTT+TGG - chr2.3:10144274-10144293 None:intergenic 30.0%
! CATTTTGTCGTTCAAATTTC+AGG - chr2.3:10143200-10143219 None:intergenic 30.0%
! TATATTTTTCCTCACTGTTC+AGG + chr2.3:10143671-10143690 MS.gene028903:intron 30.0%
! TTGATTTTCATGCTTTCTAG+GGG + chr2.3:10143220-10143239 MS.gene028903:intron 30.0%
!! GTTGATTTTCATGCTTTCTA+GGG + chr2.3:10143219-10143238 MS.gene028903:intron 30.0%
!! TTTGAGCCATGTTTTAAACT+CGG - chr2.3:10143945-10143964 None:intergenic 30.0%
!!! AGTTTTTTTTTTTTCCCCGA+GGG - chr2.3:10143867-10143886 None:intergenic 30.0%
!!! ATTTTTTGGTCTTAAACCTC+CGG - chr2.3:10144045-10144064 None:intergenic 30.0%
!!! TGTTGATTTTCATGCTTTCT+AGG + chr2.3:10143218-10143237 MS.gene028903:intron 30.0%
AAACCTTCCATCGAGTAAAT+CGG + chr2.3:10143324-10143343 MS.gene028903:intron 35.0%
ACAGGAATCACTAAAGGAAA+AGG + chr2.3:10142700-10142719 MS.gene028903:CDS 35.0%
ACGAAAAAAGCTATCCTCTT+GGG - chr2.3:10142950-10142969 None:intergenic 35.0%
AGAAATTTGATGTGGGTGAA+AGG + chr2.3:10143780-10143799 MS.gene028903:CDS 35.0%
ATCCAGCAAGAAATTTGATG+TGG + chr2.3:10143772-10143791 MS.gene028903:CDS 35.0%
ATTTACTCGATGGAAGGTTT+CGG - chr2.3:10143324-10143343 None:intergenic 35.0%
ATTTGATCGAGAGAACGAAA+TGG - chr2.3:10142391-10142410 None:intergenic 35.0%
GAGTTCCAATTTCTATCCTT+TGG + chr2.3:10142295-10142314 MS.gene028903:CDS 35.0%
GGCCAGTTGATTACATAATT+GGG + chr2.3:10142973-10142992 MS.gene028903:intron 35.0%
GGGAGGAGATAAAAGAATAA+CGG - chr2.3:10143161-10143180 None:intergenic 35.0%
GTACTGCAATGTGAATTAAG+TGG - chr2.3:10144121-10144140 None:intergenic 35.0%
TAAAATTGCAGCTATAGGAC+AGG + chr2.3:10143827-10143846 MS.gene028903:intron 35.0%
TACAGATGATATGAAACCTC+TGG + chr2.3:10144452-10144471 MS.gene028903:CDS 35.0%
TACGAAAAAAGCTATCCTCT+TGG - chr2.3:10142951-10142970 None:intergenic 35.0%
TCAACCCAAAGGATAGAAAT+TGG - chr2.3:10142303-10142322 None:intergenic 35.0%
TCATCTGTATCTTCATCTTC+TGG - chr2.3:10144441-10144460 None:intergenic 35.0%
TCCAGCAAGAAATTTGATGT+GGG + chr2.3:10143773-10143792 MS.gene028903:CDS 35.0%
TTAAAACGAATTACCCCAAG+AGG + chr2.3:10142933-10142952 MS.gene028903:intron 35.0%
TTCAGTAGTTTCAACTGATC+AGG + chr2.3:10143125-10143144 MS.gene028903:intron 35.0%
TTGTCGTTCAAATTTCAGGA+GGG - chr2.3:10143196-10143215 None:intergenic 35.0%
TTTGTCGTTCAAATTTCAGG+AGG - chr2.3:10143197-10143216 None:intergenic 35.0%
! AAAAACTGATTCAACTCGAG+TGG + chr2.3:10143880-10143899 MS.gene028903:intron 35.0%
! AAAGGAAGTATAGATGTCTC+AGG - chr2.3:10144402-10144421 None:intergenic 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG + chr2.3:10142708-10142727 MS.gene028903:CDS 35.0%
! CTTTAAAAACCTGAACAGTG+AGG - chr2.3:10143683-10143702 None:intergenic 35.0%
! GGCCAAAATATTTGGAATGT+TGG + chr2.3:10144269-10144288 MS.gene028903:intron 35.0%
! TGATTTTCATGCTTTCTAGG+GGG + chr2.3:10143221-10143240 MS.gene028903:intron 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG + chr2.3:10143681-10143700 MS.gene028903:intron 35.0%
!! TTTGGAATGTTGGCTTTATG+CGG + chr2.3:10144279-10144298 MS.gene028903:intron 35.0%
!!! AGAGGATAGCTTTTTTCGTA+AGG + chr2.3:10142951-10142970 MS.gene028903:intron 35.0%
!!! CAGTTTTTTTTTTTTCCCCG+AGG - chr2.3:10143868-10143887 None:intergenic 35.0%
!!! GAGGATAGCTTTTTTCGTAA+GGG + chr2.3:10142952-10142971 MS.gene028903:intron 35.0%
!!! GTTTTTTTTTTTTCCCCGAG+GGG - chr2.3:10143866-10143885 None:intergenic 35.0%
!!! TGTTTTGGTTAGATTGGTTG+TGG + chr2.3:10142508-10142527 MS.gene028903:intron 35.0%
AAAAAAATGCCGGGGAGAAT+GGG + chr2.3:10143705-10143724 MS.gene028903:CDS 40.0%
AACCTCCCTTGAAATCATAC+CGG - chr2.3:10143444-10143463 None:intergenic 40.0%
AACCTTCCATCGAGTAAATC+GGG + chr2.3:10143325-10143344 MS.gene028903:intron 40.0%
AATGGACCGGTATGATTTCA+AGG + chr2.3:10143435-10143454 MS.gene028903:CDS 40.0%
AATGTGGAATGACTGCACTT+TGG + chr2.3:10142256-10142275 MS.gene028903:CDS 40.0%
AATTGGTCGGCAACAGTAAT+AGG + chr2.3:10143021-10143040 MS.gene028903:intron 40.0%
ACACCAGTTCGTTGTGAATT+CGG - chr2.3:10142225-10142244 None:intergenic 40.0%
ACATTAAGCGATGTACCAAC+AGG - chr2.3:10142646-10142665 None:intergenic 40.0%
ACCCACATCAAATTTCTTGC+TGG - chr2.3:10143777-10143796 None:intergenic 40.0%
ATGGACCGGTATGATTTCAA+GGG + chr2.3:10143436-10143455 MS.gene028903:CDS 40.0%
ATGTGCTTTCGAATTCCCAT+GGG - chr2.3:10143473-10143492 None:intergenic 40.0%
ATGTGGAATGACTGCACTTT+GGG + chr2.3:10142257-10142276 MS.gene028903:CDS 40.0%
CAATGTTGTCATCAACCCAA+AGG - chr2.3:10142314-10142333 None:intergenic 40.0%
CGAAAAAAGCTATCCTCTTG+GGG - chr2.3:10142949-10142968 None:intergenic 40.0%
CTTCTGGCACAAAGTAAGTT+GGG - chr2.3:10144425-10144444 None:intergenic 40.0%
CTTCTGTTTACAGGGTGTAA+TGG + chr2.3:10143417-10143436 MS.gene028903:intron 40.0%
GACATCACAGGAATCACTAA+AGG + chr2.3:10142694-10142713 MS.gene028903:CDS 40.0%
GGCTGAACTGTAGATTACTA+GGG + chr2.3:10144002-10144021 MS.gene028903:intron 40.0%
GGGCCAGTTGATTACATAAT+TGG + chr2.3:10142972-10142991 MS.gene028903:intron 40.0%
TAAAAAAATGCCGGGGAGAA+TGG + chr2.3:10143704-10143723 MS.gene028903:CDS 40.0%
TAATTGCCCGATTTACTCGA+TGG - chr2.3:10143334-10143353 None:intergenic 40.0%
TATGTGCTTTCGAATTCCCA+TGG - chr2.3:10143474-10143493 None:intergenic 40.0%
TATTACTGTTGCCGACCAAT+TGG - chr2.3:10143022-10143041 None:intergenic 40.0%
TCAGGAGGGGTCAAATAAAA+CGG - chr2.3:10143182-10143201 None:intergenic 40.0%
TCTTCTGGCACAAAGTAAGT+TGG - chr2.3:10144426-10144445 None:intergenic 40.0%
TGATGACAACATTGTCTCTC+AGG + chr2.3:10142320-10142339 MS.gene028903:CDS 40.0%
TGGCTGAACTGTAGATTACT+AGG + chr2.3:10144001-10144020 MS.gene028903:intron 40.0%
TGTCGTTCAAATTTCAGGAG+GGG - chr2.3:10143195-10143214 None:intergenic 40.0%
TGTGATGTCAACATACTGTC+CGG - chr2.3:10142683-10142702 None:intergenic 40.0%
TGTTTCGATCCACATCCAAT+TGG + chr2.3:10143004-10143023 MS.gene028903:intron 40.0%
TTGTATGATGTGCACTATGC+AGG + chr2.3:10144323-10144342 MS.gene028903:intron 40.0%
! AACTATTTTGTATCCCCTCG+GGG + chr2.3:10143850-10143869 MS.gene028903:intron 40.0%
! GAACTATTTTGTATCCCCTC+GGG + chr2.3:10143849-10143868 MS.gene028903:intron 40.0%
! GAAGTATCCGAAGTCATACA+TGG - chr2.3:10143290-10143309 None:intergenic 40.0%
! GGAACTATTTTGTATCCCCT+CGG + chr2.3:10143848-10143867 MS.gene028903:intron 40.0%
! GGTGTTATAGCTGTGAAATG+TGG + chr2.3:10142240-10142259 MS.gene028903:CDS 40.0%
! TCGAAAGCACATAGAACCAT+GGG + chr2.3:10143481-10143500 MS.gene028903:CDS 40.0%
! TTCGAAAGCACATAGAACCA+TGG + chr2.3:10143480-10143499 MS.gene028903:CDS 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG + chr2.3:10142661-10142680 MS.gene028903:CDS 40.0%
!! ACTGCACTTTGGGATAAATG+GGG + chr2.3:10142267-10142286 MS.gene028903:CDS 40.0%
!! GACTGCACTTTGGGATAAAT+GGG + chr2.3:10142266-10142285 MS.gene028903:CDS 40.0%
!! TGACTGCACTTTGGGATAAA+TGG + chr2.3:10142265-10142284 MS.gene028903:CDS 40.0%
!! TTGGAATGTTGGCTTTATGC+GGG + chr2.3:10144280-10144299 MS.gene028903:intron 40.0%
AAACCTCTGGTTGCTGATCT+TGG + chr2.3:10144465-10144484 MS.gene028903:CDS 45.0%
AACCTCTGGTTGCTGATCTT+GGG + chr2.3:10144466-10144485 MS.gene028903:CDS 45.0%
AAGCATTCCTGAAGAACCCA+TGG - chr2.3:10143500-10143519 None:intergenic 45.0%
ACATCGGAACTCAAAAACCG+TGG - chr2.3:10142159-10142178 None:intergenic 45.0%
ACTCCGAATTCACAACGAAC+TGG + chr2.3:10142219-10142238 MS.gene028903:CDS 45.0%
AGGAATGCTTGGTCCTTGTA+AGG + chr2.3:10143510-10143529 MS.gene028903:CDS 45.0%
ATGCTTGGTCCTTGTAAGGT+TGG + chr2.3:10143514-10143533 MS.gene028903:intron 45.0%
ATGGGTTCTTCAGGAATGCT+TGG + chr2.3:10143499-10143518 MS.gene028903:CDS 45.0%
CAGGAGGGGTCAAATAAAAC+GGG - chr2.3:10143181-10143200 None:intergenic 45.0%
CATACTGTCCGGGAACAAAA+TGG - chr2.3:10142672-10142691 None:intergenic 45.0%
CATAGAACCATGGGTTCTTC+AGG + chr2.3:10143490-10143509 MS.gene028903:CDS 45.0%
GAACAATAGCCTTCCTTCTC+AGG - chr2.3:10142354-10142373 None:intergenic 45.0%
GGACAGTATGTTGACATCAC+AGG + chr2.3:10142682-10142701 MS.gene028903:CDS 45.0%
GTAATCTACAGTTCAGCCAG+AGG - chr2.3:10144000-10144019 None:intergenic 45.0%
GTCAAAACTCCTGAGAAGGA+AGG + chr2.3:10142342-10142361 MS.gene028903:CDS 45.0%
GTGATGTCAACATACTGTCC+GGG - chr2.3:10142682-10142701 None:intergenic 45.0%
GTTCCGATGTGGAGACTATA+CGG + chr2.3:10142169-10142188 MS.gene028903:CDS 45.0%
TCAGGTCAAAACTCCTGAGA+AGG + chr2.3:10142338-10142357 MS.gene028903:CDS 45.0%
TCCTGAAGCTTCCTCTTCAT+GGG - chr2.3:10142595-10142614 None:intergenic 45.0%
TCGATCCACATCCAATTGGT+CGG + chr2.3:10143008-10143027 MS.gene028903:intron 45.0%
TGGGGATGTGGATCCATTTA+TGG + chr2.3:10144485-10144504 MS.gene028903:CDS 45.0%
TTGGTCCTTGTAAGGTTGGA+TGG + chr2.3:10143518-10143537 MS.gene028903:intron 45.0%
! GAGGTTTGGTTTCTCGTCTA+CGG + chr2.3:10142112-10142131 MS.gene028903:CDS 45.0%
! GATTGGTTGTGGACAGAAGA+AGG + chr2.3:10142519-10142538 MS.gene028903:intron 45.0%
! GGCACAAAGTAAGTTGGGAA+AGG - chr2.3:10144420-10144439 None:intergenic 45.0%
!! AGCCTGAAGTGGGTCATTTT+AGG + chr2.3:10142557-10142576 MS.gene028903:CDS 45.0%
!! GCCTGAAGTGGGTCATTTTA+GGG + chr2.3:10142558-10142577 MS.gene028903:CDS 45.0%
!! GTTTACAGGGTGTAATGGAC+CGG + chr2.3:10143422-10143441 MS.gene028903:intron 45.0%
!!! ACGGTTTTTGAGTTCCGATG+TGG + chr2.3:10142158-10142177 MS.gene028903:CDS 45.0%
!! ATAAAAAATTAAAATCATTA+TGG - chr2.3:10144086-10144105 None:intergenic 5.0%
!! TATTATTTATAAAGAAAAAA+AGG - chr2.3:10142771-10142790 None:intergenic 5.0%
ACAAAGTTCCCTGTAGCTCC+TGG - chr2.3:10144351-10144370 None:intergenic 50.0%
ACACTCGACAAAGCCTGAAG+TGG + chr2.3:10142546-10142565 MS.gene028903:CDS 50.0%
ACCTCTGGTTGCTGATCTTG+GGG + chr2.3:10144467-10144486 MS.gene028903:CDS 50.0%
AGAACGAAATGGAACGCACC+TGG - chr2.3:10142380-10142399 None:intergenic 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG - chr2.3:10144350-10144369 None:intergenic 50.0%
CACTCGACAAAGCCTGAAGT+GGG + chr2.3:10142547-10142566 MS.gene028903:CDS 50.0%
CCTCCGTATAGTCTCCACAT+CGG - chr2.3:10142175-10142194 None:intergenic 50.0%
CTCAAGGAGTTCCCATGAAG+AGG + chr2.3:10142581-10142600 MS.gene028903:CDS 50.0%
CTCCTGAAGCTTCCTCTTCA+TGG - chr2.3:10142596-10142615 None:intergenic 50.0%
GAACTCAAAAACCGTGGCAG+CGG - chr2.3:10142153-10142172 None:intergenic 50.0%
GAATTCGGAGTCATCACGCT+AGG - chr2.3:10142210-10142229 None:intergenic 50.0%
GACCGGTATGATTTCAAGGG+AGG + chr2.3:10143439-10143458 MS.gene028903:CDS 50.0%
GAGGATGCACTTCTTCCTGT+TGG + chr2.3:10142628-10142647 MS.gene028903:CDS 50.0%
GAGGGGTCAAATAAAACGGG+AGG - chr2.3:10143178-10143197 None:intergenic 50.0%
GCCCTAAAATGACCCACTTC+AGG - chr2.3:10142562-10142581 None:intergenic 50.0%
GGAAGGCTATTGTTCTCTCC+AGG + chr2.3:10142359-10142378 MS.gene028903:CDS 50.0%
GGACTCCATCCAACCTTACA+AGG - chr2.3:10143526-10143545 None:intergenic 50.0%
TACTAGGGTTCCTTCCCTCA+CGG + chr2.3:10144017-10144036 MS.gene028903:intron 50.0%
TCCCATGAAGAGGAAGCTTC+AGG + chr2.3:10142591-10142610 MS.gene028903:CDS 50.0%
TGCCCGATTTACTCGATGGA+AGG - chr2.3:10143330-10143349 None:intergenic 50.0%
TGTTGCCGACCAATTGGATG+TGG - chr2.3:10143016-10143035 None:intergenic 50.0%
TTAAACCTCCGGTTCCGTGA+GGG - chr2.3:10144034-10144053 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG + chr2.3:10143785-10143804 MS.gene028903:CDS 50.0%
! TCAGGAGTTTCGAGTGACAG+AGG + chr2.3:10142609-10142628 MS.gene028903:CDS 50.0%
!! GCTAGCGTTTTCGAGAGGTT+TGG + chr2.3:10142098-10142117 MS.gene028903:CDS 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG + chr2.3:10142565-10142584 MS.gene028903:CDS 50.0%
AAAATGCCGGGGAGAATGGG+TGG + chr2.3:10143708-10143727 MS.gene028903:CDS 55.0%
AAATGCCGGGGAGAATGGGT+GGG + chr2.3:10143709-10143728 MS.gene028903:CDS 55.0%
AAGGGAGGTTCAGCATCCCA+TGG + chr2.3:10143454-10143473 MS.gene028903:CDS 55.0%
AGGGAGGTTCAGCATCCCAT+GGG + chr2.3:10143455-10143474 MS.gene028903:CDS 55.0%
ATGTGCACTATGCAGGTCCC+AGG + chr2.3:10144330-10144349 MS.gene028903:intron 55.0%
CCGATGTGGAGACTATACGG+AGG + chr2.3:10142172-10142191 MS.gene028903:CDS 55.0%
CTTAAACCTCCGGTTCCGTG+AGG - chr2.3:10144035-10144054 None:intergenic 55.0%
GGTTGCTGATCTTGGGGATG+TGG + chr2.3:10144473-10144492 MS.gene028903:CDS 55.0%
TCCCCAAGATCAGCAACCAG+AGG - chr2.3:10144471-10144490 None:intergenic 55.0%
TCGTCTACGGCAATTCCCTG+TGG + chr2.3:10142125-10142144 MS.gene028903:CDS 55.0%
ATGCAGGTCCCAGGAGCTAC+AGG + chr2.3:10144339-10144358 MS.gene028903:intron 60.0%
GGTTCCTTCCCTCACGGAAC+CGG + chr2.3:10144023-10144042 MS.gene028903:intron 60.0%
TGCAGGTCCCAGGAGCTACA+GGG + chr2.3:10144340-10144359 MS.gene028903:intron 60.0%
TGCTTCCCACCCATTCTCCC+CGG - chr2.3:10143717-10143736 None:intergenic 60.0%
ACCTCCGGTTCCGTGAGGGA+AGG - chr2.3:10144030-10144049 None:intergenic 65.0%
TCCTTCCCTCACGGAACCGG+AGG + chr2.3:10144026-10144045 MS.gene028903:intron 65.0%
AACCGTGGCAGCGGCGCCAC+AGG - chr2.3:10142144-10142163 None:intergenic 75.0%
ACCGTGGCAGCGGCGCCACA+GGG - chr2.3:10142143-10142162 None:intergenic 75.0%
TCCCTGTGGCGCCGCTGCCA+CGG + chr2.3:10142139-10142158 MS.gene028903:CDS 75.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 10142096 10144518 10142096 ID=MS.gene028903
chr2.3 mRNA 10142096 10144518 10142096 ID=MS.gene028903.t1;Parent=MS.gene028903
chr2.3 exon 10142096 10142380 10142096 ID=MS.gene028903.t1.exon1;Parent=MS.gene028903.t1
chr2.3 CDS 10142096 10142380 10142096 ID=cds.MS.gene028903.t1;Parent=MS.gene028903.t1
chr2.3 exon 10142520 10142729 10142520 ID=MS.gene028903.t1.exon2;Parent=MS.gene028903.t1
chr2.3 CDS 10142520 10142729 10142520 ID=cds.MS.gene028903.t1;Parent=MS.gene028903.t1
chr2.3 exon 10143430 10143531 10143430 ID=MS.gene028903.t1.exon3;Parent=MS.gene028903.t1
chr2.3 CDS 10143430 10143531 10143430 ID=cds.MS.gene028903.t1;Parent=MS.gene028903.t1
chr2.3 exon 10143693 10143806 10143693 ID=MS.gene028903.t1.exon4;Parent=MS.gene028903.t1
chr2.3 CDS 10143693 10143806 10143693 ID=cds.MS.gene028903.t1;Parent=MS.gene028903.t1
chr2.3 exon 10144345 10144518 10144345 ID=MS.gene028903.t1.exon5;Parent=MS.gene028903.t1
chr2.3 CDS 10144345 10144518 10144345 ID=cds.MS.gene028903.t1;Parent=MS.gene028903.t1
Gene Sequence

>MS.gene028903

ATGCTAGCGTTTTCGAGAGGTTTGGTTTCTCGTCTACGGCAATTCCCTGTGGCGCCGCTGCCACGGTTTTTGAGTTCCGATGTGGAGACTATACGGAGGATTGAAGCAAAACCTAGCGTGATGACTCCGAATTCACAACGAACTGGTGTTATAGCTGTGAAATGTGGAATGACTGCACTTTGGGATAAATGGGGTGCTAGAGTTCCAATTTCTATCCTTTGGGTTGATGACAACATTGTCTCTCAGGTCAAAACTCCTGAGAAGGAAGGCTATTGTTCTCTCCAGGTGCGTTCCATTTCGTTCTCTCGATCAAATTTTAATGTTTATAATGAATTATTAAGCGGAGTTGCTTGTTCCCTCGTGTATATTTTTAAGTTCAATGTGTATCTAATTATAGACATGTTTGATATTTTGTTTTGGTTAGATTGGTTGTGGACAGAAGAAGGAGAAACACTCGACAAAGCCTGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCCATGAAGAGGAAGCTTCAGGAGTTTCGAGTGACAGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGACAGTATGTTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGTGTTTTTCTCTTTCCCTCATACTATATACTTCTCATTCCTTTTTTTCTTTATAAATAATAATCTCTCTCTTACATTGTTTATGTAGTATTTGTACATGTTTATGCTTGTATTGTTCCTGCTTGTGTCTATATAATACTTGAGTTGAGTTGAAATGCTTAGTTATTATTTTGTCAAAGAATTATTAAATTTATATTTATAGGATTAAAACGAATTACCCCAAGAGGATAGCTTTTTTCGTAAGGGCCAGTTGATTACATAATTGGGATTTTAAGTGTTTCGATCCACATCCAATTGGTCGGCAACAGTAATAGGTTCACAAATGCATTATATGCCACTATTTATTTGTTCAATTGTTTTGTTTCCGATTTATTTACTTTTGGGCGATCATTCATGTTCAGTAGTTTCAACTGATCAGGTGATGTTGCACCGTTATTCTTTTATCTCCTCCCGTTTTATTTGACCCCTCCTGAAATTTGAACGACAAAATGTTGATTTTCATGCTTTCTAGGGGGTGTTTTTTTGTTTATTTTTTCTGTTTCTTATTTTATTTATAATCCATGTATGACTTCGGATACTTCTCTGTTTCATGCCGAAACCTTCCATCGAGTAAATCGGGCAATTACATGATACTACCATTTTTACAGATCTATGTCCTTTCAGTTACATGACTGTTAATTCAAATTATCTTCTGTTTACAGGGTGTAATGGACCGGTATGATTTCAAGGGAGGTTCAGCATCCCATGGGAATTCGAAAGCACATAGAACCATGGGTTCTTCAGGAATGCTTGGTCCTTGTAAGGTTGGATGGAGTCCTTTAGATTAGTATTTTTTCTTAATTAATACATCTTTCTGTATTTATATATATTGAAAATATGTTTGATTGACTGTCTGTAAGTTTATTTCTTTACATTTATGTTTCTCACCTATAGTTGTGATAATATATTTTTCCTCACTGTTCAGGTTTTTAAAGGTAAAAAAATGCCGGGGAGAATGGGTGGGAAGCAAAGAACAGTAAAAAATGTATGGGTCTACAAAATTGATCCAGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTAATTTTATATACGATTTATAAAATTGCAGCTATAGGACAGGAACTATTTTGTATCCCCTCGGGGAAAAAAAAAAAACTGATTCAACTCGAGTGGTTAAAGAGCTTCAGTTAAAGATGAATCGATCTGAAGTATCCGAGTTTAAAACATGGCTCAAAGCCTGAAACAATCCTCATTCAAATTTTATTTACCTCTGGCTGAACTGTAGATTACTAGGGTTCCTTCCCTCACGGAACCGGAGGTTTAAGACCAAAAAATATCAACTAAGATAGTTGGCCATAATGATTTTAATTTTTTATTAAATTTGAATCCCACTTAATTCACATTGCAGTACTGCTAGTATAGAAACTTGTATGTTTATATGAGCTAAGAAATTTTGTATGACGATATCATTAAGAAAACGATGGTGAATCAGTAACCATTTTGTATCTATTTTAATATGCCACTTATTTATTAATAACTGGCCAAAATATTTGGAATGTTGGCTTTATGCGGGCTGATTGCTTTTCTTTGTAATTGTATGATGTGCACTATGCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTTTATGAAAAACCTGAGACATCTATACTTCCTTTCCCAACTTACTTTGTGCCAGAAGATGAAGATACAGATGATATGAAACCTCTGGTTGCTGATCTTGGGGATGTGGATCCATTTATGGTTACTGATTAA
Protein sequence

>MS.gene028903.t1

MLAFSRGLVSRLRQFPVAPLPRFLSSDVETIRRIEAKPSVMTPNSQRTGVIAVKCGMTALWDKWGARVPISILWVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHSTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYVDITGITKGKGFQGVMDRYDFKGGSASHGNSKAHRTMGSSGMLGPCKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPETSILPFPTYFVPEDEDTDDMKPLVADLGDVDPFMVTD