AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34167

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34167.t1 MTR_6g006970 95.918 294 12 0 1 294 1 294 0.0 584
MS.gene34167.t1 MTR_1g093060 93.197 294 20 0 1 294 54 347 0.0 574
MS.gene34167.t1 MTR_2g090370 96.154 104 4 0 189 292 1 104 1.61e-70 218
MS.gene34167.t1 MTR_3g118210 40.580 207 117 6 49 251 58 262 3.98e-43 149
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34167.t1 AT3G17465 65.432 324 82 4 1 294 1 324 1.46e-145 412
MS.gene34167.t1 AT2G43030 37.864 206 124 4 49 251 57 261 1.05e-37 135

Find 76 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATTCCGATTTCTATTCTT+TGG 0.167396 6.3:-2592344 MS.gene34167:CDS
TGACTGCACATTGGGATAAA+TGG 0.170253 6.3:-2592374 MS.gene34167:CDS
TGGAGATGTTGATCCATTTA+TGG 0.231728 6.3:-2589772 MS.gene34167:CDS
CTTTAATCAACAACCATAAA+TGG 0.251126 6.3:+2589759 None:intergenic
AAACCTTTGATTGCTGATCT+TGG 0.325072 6.3:-2589792 MS.gene34167:CDS
ACCCACATCAAATTTCTTGC+AGG 0.337634 6.3:+2590424 None:intergenic
AATTCCGATTTCTATTCTTT+GGG 0.348660 6.3:-2592343 MS.gene34167:CDS
TCATCAGTATCTTCATCTTC+TGG 0.356008 6.3:+2589819 None:intergenic
GCCCTAAAATGACCCACTTC+AGG 0.379527 6.3:+2591617 None:intergenic
AGACCAGTTCGTCGTGAATT+CGG 0.379951 6.3:+2592417 None:intergenic
GATTGGTTGTGGACAGAAGA+AGG 0.380825 6.3:-2591657 MS.gene34167:CDS
GTTCGGATGTGGAGACTATA+CGG 0.382445 6.3:-2592470 MS.gene34167:CDS
TATACTGGCCGGGAACAAAA+TGG 0.397207 6.3:+2591507 None:intergenic
GAACAATAACCTTCCTTCTC+TGG 0.412164 6.3:+2592288 None:intergenic
TGCTTCCCACCCATTCTCCC+TGG 0.421120 6.3:+2590484 None:intergenic
AGGAATGCTTGGTCCTTGTA+AGG 0.424571 6.3:-2590695 MS.gene34167:intron
TTTGAATTCCCGTGGGATGC+TGG 0.425628 6.3:+2590742 None:intergenic
GACTGCACATTGGGATAAAT+GGG 0.426456 6.3:-2592373 MS.gene34167:CDS
ACAAAGTTCCCTGTAGCTCC+TGG 0.431609 6.3:+2589909 None:intergenic
ACACCGAATTCACGACGAAC+TGG 0.433955 6.3:-2592420 MS.gene34167:CDS
TCTTCTGGTACGAAGTAAGT+TGG 0.442395 6.3:+2589834 None:intergenic
ACGCAGGTCCCAGGAGCTAC+AGG 0.453068 6.3:-2589918 MS.gene34167:intron
ATGTGGAATGACTGCACATT+GGG 0.466335 6.3:-2592382 MS.gene34167:CDS
CATAAAACCATGGGATCTAC+AGG 0.470091 6.3:-2590715 MS.gene34167:CDS
CCTCGGTCACTCGAAACTCT+TGG 0.474118 6.3:+2591567 None:intergenic
TCAACCCAAAGAATAGAAAT+CGG 0.483179 6.3:+2592339 None:intergenic
GGACTCCAACGAACCTTACA+AGG 0.488201 6.3:+2590682 None:intergenic
GGAGAATGGGTGGGAAGCAA+AGG 0.494792 6.3:-2590480 MS.gene34167:CDS
ACAGGAATCACTAAAGGAAA+AGG 0.499985 6.3:-2591476 MS.gene34167:CDS
CTTCTGGTACGAAGTAAGTT+GGG 0.502351 6.3:+2589835 None:intergenic
AAATCGTGGCAGCGGTGCCA+CGG 0.503916 6.3:+2592497 None:intergenic
ACATTAAGCGATGTACCAAC+AGG 0.508189 6.3:+2591533 None:intergenic
GGAAGGTTATTGTTCTCTCC+AGG 0.513728 6.3:-2592280 MS.gene34167:intron
ATGTGCACAACGCAGGTCCC+AGG 0.516631 6.3:-2589927 MS.gene34167:intron
AATCGTGGCAGCGGTGCCAC+GGG 0.518214 6.3:+2592498 None:intergenic
TCTTGGAGCTTCCTCTTCAT+CGG 0.518555 6.3:+2591584 None:intergenic
CTCAAGGAGTTCCGATGAAG+AGG 0.527266 6.3:-2591595 MS.gene34167:CDS
TTCCTGTGATGTCAATATAC+TGG 0.527980 6.3:+2591492 None:intergenic
TTTGATGTGGGTGAAAGGCC+AGG 0.528326 6.3:-2590413 MS.gene34167:intron
GAATTCGGTGTCATCACGCT+AGG 0.535765 6.3:+2592432 None:intergenic
ATGGGATCTACAGGAATGCT+TGG 0.536160 6.3:-2590706 MS.gene34167:CDS
AACAGGAAGAAGTGCATCCT+CGG 0.537876 6.3:+2591550 None:intergenic
TGTGATGTCAATATACTGGC+CGG 0.538363 6.3:+2591496 None:intergenic
GACATCACAGGAATCACTAA+AGG 0.546543 6.3:-2591482 MS.gene34167:CDS
AAAGGAAGTATAGACGTGTC+AGG 0.547256 6.3:+2589858 None:intergenic
AGAAATTTGATGTGGGTGAA+AGG 0.548749 6.3:-2590418 MS.gene34167:CDS
CAAAGTTCCCTGTAGCTCCT+GGG 0.553971 6.3:+2589910 None:intergenic
TCAAGTCAAAACTCCAGAGA+AGG 0.559481 6.3:-2592301 MS.gene34167:CDS
ACACTTGACAAAGCCTGAAG+TGG 0.560843 6.3:-2591630 MS.gene34167:CDS
TTCAAAAGCACATAAAACCA+TGG 0.565886 6.3:-2590725 MS.gene34167:CDS
AAGCATTCCTGTAGATCCCA+TGG 0.568063 6.3:+2590708 None:intergenic
GCTGGAGGTCCAGCATCCCA+CGG 0.573473 6.3:-2590751 MS.gene34167:CDS
CTGGAGGTCCAGCATCCCAC+GGG 0.585754 6.3:-2590750 MS.gene34167:CDS
GGCCAGTATATTGACATCAC+AGG 0.587654 6.3:-2591494 MS.gene34167:CDS
GTGATGTCAATATACTGGCC+GGG 0.589284 6.3:+2591497 None:intergenic
CGCAGGTCCCAGGAGCTACA+GGG 0.595348 6.3:-2589917 MS.gene34167:intron
GTTTCCAGGGTGTGATGACA+CGG 0.597663 6.3:-2590783 MS.gene34167:intron
TCTCCAAGATCAGCAATCAA+AGG 0.597900 6.3:+2589789 None:intergenic
TCAAAAGCACATAAAACCAT+GGG 0.598380 6.3:-2590724 MS.gene34167:CDS
GAGGATGCACTTCTTCCTGT+TGG 0.601500 6.3:-2591548 MS.gene34167:CDS
ACCTCTCGAAAACGCCAGCA+TGG 0.602437 6.3:+2592545 None:intergenic
CACTTGACAAAGCCTGAAGT+GGG 0.609676 6.3:-2591629 MS.gene34167:CDS
AAGATGCCAGGGAGAATGGG+TGG 0.609930 6.3:-2590490 MS.gene34167:CDS
CCAGGGTGTGATGACACGGT+GGG 0.611262 6.3:-2590779 MS.gene34167:intron
GGTACGAAGTAAGTTGGGAA+AGG 0.612794 6.3:+2589840 None:intergenic
GTCAAAACTCCAGAGAAGGA+AGG 0.627398 6.3:-2592297 MS.gene34167:CDS
GTGCCACGGGAAATTGTCGA+AGG 0.628893 6.3:+2592511 None:intergenic
AATGTGGAATGACTGCACAT+TGG 0.638693 6.3:-2592383 MS.gene34167:CDS
GGTCTTGTAGCTGTAAAATG+TGG 0.640499 6.3:-2592399 MS.gene34167:CDS
CCAAGAGTTTCGAGTGACCG+AGG 0.654882 6.3:-2591567 MS.gene34167:CDS
AGATGCCAGGGAGAATGGGT+GGG 0.656976 6.3:-2590489 MS.gene34167:CDS
ATCCTGCAAGAAATTTGATG+TGG 0.660543 6.3:-2590426 MS.gene34167:CDS
TCGCCTTCGACAATTTCCCG+TGG 0.673310 6.3:-2592514 MS.gene34167:CDS
TCCTGCAAGAAATTTGATGT+GGG 0.674361 6.3:-2590425 MS.gene34167:CDS
TCCAGGGTGTGATGACACGG+TGG 0.698119 6.3:-2590780 MS.gene34167:intron
ACTGCACATTGGGATAAATG+GGG 0.760426 6.3:-2592372 MS.gene34167:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATGTCATTATTTATTATT+TGG - chr6.3:2591126-2591145 MS.gene34167:intron 10.0%
!! GTAAAAAAACAATATTAATA+TGG - chr6.3:2590442-2590461 MS.gene34167:CDS 10.0%
!! AAAATTATTATACGTTCATT+TGG + chr6.3:2590218-2590237 None:intergenic 15.0%
!! AAATTTAATAAATTCTTCGA+CGG + chr6.3:2591032-2591051 None:intergenic 15.0%
!! AAATTTGAAAAACTAAATGT+TGG - chr6.3:2591291-2591310 MS.gene34167:intron 15.0%
!! ATTAATATGGAGATAATATT+CGG - chr6.3:2590455-2590474 MS.gene34167:CDS 15.0%
!! TTCACATTAATTTATAAATC+TGG - chr6.3:2591945-2591964 MS.gene34167:intron 15.0%
!! TTGTATTTGTAAGATTAAAA+TGG - chr6.3:2591050-2591069 MS.gene34167:intron 15.0%
!! AAGAAAGAATACTAATCTTA+AGG + chr6.3:2591646-2591665 None:intergenic 20.0%
!! AGTATATAAAAACAATTACC+TGG + chr6.3:2591912-2591931 None:intergenic 20.0%
!! ATTGTGCAGAAATATATAAA+TGG + chr6.3:2591169-2591188 None:intergenic 20.0%
!! GATCATTATTTATAAGGAAA+AGG + chr6.3:2590898-2590917 None:intergenic 20.0%
!! TATATTATCATAACAACTGT+CGG + chr6.3:2591760-2591779 None:intergenic 20.0%
!! TGATCATTAACATGATATAA+CGG - chr6.3:2590312-2590331 MS.gene34167:intron 20.0%
!! TTGAAAATATGTTAGATTGA+CGG - chr6.3:2591696-2591715 MS.gene34167:intron 20.0%
!!! AGATTACAATGTACAAATTT+TGG - chr6.3:2590268-2590287 MS.gene34167:intron 20.0%
!!! ATACTTTGTTTTAGTTAGAT+TGG - chr6.3:2590630-2590649 MS.gene34167:intron 20.0%
!!! ATTTATAAATCTGGAACTAT+AGG - chr6.3:2591954-2591973 MS.gene34167:intron 20.0%
!!! TACAGTAAAAAAGCATAATA+TGG - chr6.3:2590362-2590381 MS.gene34167:intron 20.0%
!!! TTTATAAATCTGGAACTATA+GGG - chr6.3:2591955-2591974 MS.gene34167:intron 20.0%
! AAAGGACAGTAAAAAATGTA+TGG - chr6.3:2591842-2591861 MS.gene34167:intron 25.0%
! AAGGACAGTAAAAAATGTAT+GGG - chr6.3:2591843-2591862 MS.gene34167:intron 25.0%
! AATTCCGATTTCTATTCTTT+GGG - chr6.3:2589961-2589980 MS.gene34167:intron 25.0%
! AGACATAGATCTGTAAAAAA+TGG + chr6.3:2591462-2591481 None:intergenic 25.0%
! ATCAAGTAATTAAACCAAAG+TGG - chr6.3:2592009-2592028 MS.gene34167:intron 25.0%
! ATGAGTAATGAGTTATTAAG+TGG - chr6.3:2590509-2590528 MS.gene34167:intron 25.0%
! CAAATATTTAAGCCAGTTAA+TGG + chr6.3:2592315-2592334 None:intergenic 25.0%
! GAGAGAGATCATTATTTATA+AGG + chr6.3:2590904-2590923 None:intergenic 25.0%
! TAGACATAAAAAAATCACCT+CGG - chr6.3:2592098-2592117 MS.gene34167:intron 25.0%
! TGAAATTTATCAGGTTAGAT+TGG - chr6.3:2590407-2590426 MS.gene34167:intron 25.0%
! TTATATCATTAAGAGATCGA+TGG - chr6.3:2592246-2592265 MS.gene34167:intron 25.0%
!! AAATTATCTTTTCTGTTTCC+AGG - chr6.3:2591507-2591526 MS.gene34167:CDS 25.0%
!! AATTACTTGATTTTTGTCTG+AGG + chr6.3:2592000-2592019 None:intergenic 25.0%
!! AATTATCTTTTCTGTTTCCA+GGG - chr6.3:2591508-2591527 MS.gene34167:CDS 25.0%
!! ATATATTTCTGCACAATCAT+CGG - chr6.3:2591172-2591191 MS.gene34167:intron 25.0%
!! CATTAACTGGCTTAAATATT+TGG - chr6.3:2592313-2592332 MS.gene34167:CDS 25.0%
!! TGTTTCTAATGAGTTTAATG+TGG - chr6.3:2590080-2590099 MS.gene34167:intron 25.0%
!!! TATTATTGTTTCTGACCAAT+TGG + chr6.3:2591082-2591101 None:intergenic 25.0%
!!! TTAAAATGGATTACACCAAT+TGG - chr6.3:2591064-2591083 MS.gene34167:intron 25.0%
AGTTATTGTAAGAGTAACTC+TGG + chr6.3:2590546-2590565 None:intergenic 30.0%
ATTATTATACAGACACATGC+AGG + chr6.3:2590952-2590971 None:intergenic 30.0%
CATGATATAACGGTAATATC+AGG - chr6.3:2590322-2590341 MS.gene34167:intron 30.0%
GAATTCCGATTTCTATTCTT+TGG - chr6.3:2589960-2589979 MS.gene34167:intron 30.0%
GTTATTGTAAGAGTAACTCT+GGG + chr6.3:2590545-2590564 None:intergenic 30.0%
TACTTCAAGTGTGAATTAAG+TGG + chr6.3:2592173-2592192 None:intergenic 30.0%
TAGCTCAATTATCCATTAAC+TGG - chr6.3:2592300-2592319 MS.gene34167:CDS 30.0%
TCAACCCAAAGAATAGAAAT+CGG + chr6.3:2589968-2589987 None:intergenic 30.0%
TTAAAGGTAAAAAGATGCCA+GGG - chr6.3:2591803-2591822 MS.gene34167:intron 30.0%
TTGTAATTCGTATATGACTG+TGG - chr6.3:2591375-2591394 MS.gene34167:intron 30.0%
TTTAAAGGTAAAAAGATGCC+AGG - chr6.3:2591802-2591821 MS.gene34167:intron 30.0%
! TCAAAAGCACATAAAACCAT+GGG - chr6.3:2591580-2591599 MS.gene34167:CDS 30.0%
! TCTATGTCTTTTCAGTTACA+CGG - chr6.3:2591473-2591492 MS.gene34167:CDS 30.0%
! TTCAAAAGCACATAAAACCA+TGG - chr6.3:2591579-2591598 MS.gene34167:CDS 30.0%
!! AGTTTTTCAAATTTCCAGAG+AGG + chr6.3:2591285-2591304 None:intergenic 30.0%
!!! ATATTTTTTCCTCACTGTTC+AGG - chr6.3:2591777-2591796 MS.gene34167:intron 30.0%
!!! TGTTTTAGTTAGATTGGTTG+TGG - chr6.3:2590636-2590655 MS.gene34167:intron 30.0%
!!! TTGGTTTGCATGCTTTTTAA+GGG - chr6.3:2591310-2591329 MS.gene34167:intron 30.0%
AAACCTTTGATTGCTGATCT+TGG - chr6.3:2592512-2592531 MS.gene34167:CDS 35.0%
AACCTTCCATTGAGTAAATC+AGG - chr6.3:2591420-2591439 MS.gene34167:intron 35.0%
ACAGGAATCACTAAAGGAAA+AGG - chr6.3:2590828-2590847 MS.gene34167:intron 35.0%
ACATCCGAACTAAAAAATCG+TGG + chr6.3:2589824-2589843 None:intergenic 35.0%
ACGGTAATATCAGGTTAGAT+TGG - chr6.3:2590331-2590350 MS.gene34167:intron 35.0%
ACTCAGTTCATAGTTACTCA+TGG - chr6.3:2590107-2590126 MS.gene34167:intron 35.0%
AGAAATTTGATGTGGGTGAA+AGG - chr6.3:2591886-2591905 MS.gene34167:intron 35.0%
ATCCTGCAAGAAATTTGATG+TGG - chr6.3:2591878-2591897 MS.gene34167:intron 35.0%
CATCTTGCATGTACAAGTTA+AGG - chr6.3:2591215-2591234 MS.gene34167:intron 35.0%
CTATTGCCTGATTTACTCAA+TGG + chr6.3:2591429-2591448 None:intergenic 35.0%
CTCGATTGGTGAAATTTATC+AGG - chr6.3:2590398-2590417 MS.gene34167:intron 35.0%
GAGATAATATTCTGCTCGAT+TGG - chr6.3:2590384-2590403 MS.gene34167:intron 35.0%
GATGAGAAGTAAATAGTGTG+AGG + chr6.3:2590874-2590893 None:intergenic 35.0%
TCATCAGTATCTTCATCTTC+TGG + chr6.3:2592488-2592507 None:intergenic 35.0%
TCCTGCAAGAAATTTGATGT+GGG - chr6.3:2591879-2591898 MS.gene34167:intron 35.0%
TGGAGATGTTGATCCATTTA+TGG - chr6.3:2592532-2592551 MS.gene34167:CDS 35.0%
TTCCTGTGATGTCAATATAC+TGG + chr6.3:2590815-2590834 None:intergenic 35.0%
! CACTAAAGGAAAAGGTTTTC+AGG - chr6.3:2590836-2590855 MS.gene34167:intron 35.0%
! CTATGTCTTTTCAGTTACAC+GGG - chr6.3:2591474-2591493 MS.gene34167:CDS 35.0%
! CTTTAAAAACCTGAACAGTG+AGG + chr6.3:2591789-2591808 None:intergenic 35.0%
! TATGTCTTTTCAGTTACACG+GGG - chr6.3:2591475-2591494 MS.gene34167:CDS 35.0%
! TGGTGCATCAGTAATAGTTT+TGG - chr6.3:2592266-2592285 MS.gene34167:intron 35.0%
! TTGTCTGAGGTGATATAAGA+TGG + chr6.3:2591987-2592006 None:intergenic 35.0%
!! CTCACTGTTCAGGTTTTTAA+AGG - chr6.3:2591787-2591806 MS.gene34167:intron 35.0%
!! TGGTTTGCATGCTTTTTAAG+GGG - chr6.3:2591311-2591330 MS.gene34167:intron 35.0%
!! TTGGAATCTCAGCTTTATTG+CGG - chr6.3:2592332-2592351 MS.gene34167:CDS 35.0%
!!! ACGATTTTTTAGTTCGGATG+TGG - chr6.3:2589823-2589842 MS.gene34167:CDS 35.0%
!!! GTTGGTTTGCATGCTTTTTA+AGG - chr6.3:2591309-2591328 MS.gene34167:intron 35.0%
AAAAAGATGCCAGGGAGAAT+GGG - chr6.3:2591811-2591830 MS.gene34167:intron 40.0%
AATGTGGAATGACTGCACAT+TGG - chr6.3:2589921-2589940 MS.gene34167:intron 40.0%
ACATTAAGCGATGTACCAAC+AGG + chr6.3:2590774-2590793 None:intergenic 40.0%
ACCCACATCAAATTTCTTGC+AGG + chr6.3:2591883-2591902 None:intergenic 40.0%
ACTGCACATTGGGATAAATG+GGG - chr6.3:2589932-2589951 MS.gene34167:intron 40.0%
AGGAAGCTCATTAACCACTT+TGG + chr6.3:2592026-2592045 None:intergenic 40.0%
ATGTGGAATGACTGCACATT+GGG - chr6.3:2589922-2589941 MS.gene34167:intron 40.0%
CATAAAACCATGGGATCTAC+AGG - chr6.3:2591589-2591608 MS.gene34167:CDS 40.0%
CCAGAGAGGACAAGTAAAAT+GGG + chr6.3:2591271-2591290 None:intergenic 40.0%
CTTCTGGTACGAAGTAAGTT+GGG + chr6.3:2592472-2592491 None:intergenic 40.0%
GAACAATAACCTTCCTTCTC+TGG + chr6.3:2590019-2590038 None:intergenic 40.0%
GAACTAAAAAATCGTGGCAG+CGG + chr6.3:2589818-2589837 None:intergenic 40.0%
GACATCACAGGAATCACTAA+AGG - chr6.3:2590822-2590841 MS.gene34167:intron 40.0%
GACTGCACATTGGGATAAAT+GGG - chr6.3:2589931-2589950 MS.gene34167:intron 40.0%
TAAAAAGATGCCAGGGAGAA+TGG - chr6.3:2591810-2591829 MS.gene34167:intron 40.0%
TCAAGTCAAAACTCCAGAGA+AGG - chr6.3:2590003-2590022 MS.gene34167:intron 40.0%
TCCAGAGAGGACAAGTAAAA+TGG + chr6.3:2591272-2591291 None:intergenic 40.0%
TCTCCAAGATCAGCAATCAA+AGG + chr6.3:2592518-2592537 None:intergenic 40.0%
TCTTCTGGTACGAAGTAAGT+TGG + chr6.3:2592473-2592492 None:intergenic 40.0%
TGACTGCACATTGGGATAAA+TGG - chr6.3:2589930-2589949 MS.gene34167:intron 40.0%
TGCCTGATTTACTCAATGGA+AGG + chr6.3:2591425-2591444 None:intergenic 40.0%
TGTGATGTCAATATACTGGC+CGG + chr6.3:2590811-2590830 None:intergenic 40.0%
! AAAGGAAGTATAGACGTGTC+AGG + chr6.3:2592449-2592468 None:intergenic 40.0%
! ATCATCTGGAGTTCGGTAAA+AGG + chr6.3:2592046-2592065 None:intergenic 40.0%
! ATGTGCTTTTGAATTCCCGT+GGG + chr6.3:2591572-2591591 None:intergenic 40.0%
! GAGATAATATTCGGCTCGAT+TGG - chr6.3:2590464-2590483 MS.gene34167:CDS 40.0%
! GGTCTTGTAGCTGTAAAATG+TGG - chr6.3:2589905-2589924 MS.gene34167:CDS 40.0%
! TATGTGCTTTTGAATTCCCG+TGG + chr6.3:2591573-2591592 None:intergenic 40.0%
!! AATGTTCGCCATTTTGTTCC+CGG - chr6.3:2590789-2590808 MS.gene34167:intron 40.0%
!! TTTGCATGCTTTTTAAGGGG+TGG - chr6.3:2591314-2591333 MS.gene34167:intron 40.0%
!!! GCTGCCACGATTTTTTAGTT+CGG - chr6.3:2589817-2589836 MS.gene34167:CDS 40.0%
AAGCATTCCTGTAGATCCCA+TGG + chr6.3:2591599-2591618 None:intergenic 45.0%
ACACTTGACAAAGCCTGAAG+TGG - chr6.3:2590674-2590693 MS.gene34167:intron 45.0%
AGACCAGTTCGTCGTGAATT+CGG + chr6.3:2589890-2589909 None:intergenic 45.0%
AGGAATGCTTGGTCCTTGTA+AGG - chr6.3:2591609-2591628 MS.gene34167:CDS 45.0%
ATAATGAAGCAGAACGCACC+TGG + chr6.3:2590045-2590064 None:intergenic 45.0%
ATGGGATCTACAGGAATGCT+TGG - chr6.3:2591598-2591617 MS.gene34167:CDS 45.0%
CACTTGACAAAGCCTGAAGT+GGG - chr6.3:2590675-2590694 MS.gene34167:intron 45.0%
CATTCATAGACAAGTGTCCG+AGG + chr6.3:2592118-2592137 None:intergenic 45.0%
CTAAACCCTCCTATTCCTAG+AGG + chr6.3:2592081-2592100 None:intergenic 45.0%
GGAAGGTTATTGTTCTCTCC+AGG - chr6.3:2590024-2590043 MS.gene34167:intron 45.0%
GGCCAGTATATTGACATCAC+AGG - chr6.3:2590810-2590829 MS.gene34167:intron 45.0%
GTCAAAACTCCAGAGAAGGA+AGG - chr6.3:2590007-2590026 MS.gene34167:intron 45.0%
GTGATGTCAATATACTGGCC+GGG + chr6.3:2590810-2590829 None:intergenic 45.0%
GTGCGTTCTGCTTCATTATC+AGG - chr6.3:2590046-2590065 MS.gene34167:intron 45.0%
GTTCGGATGTGGAGACTATA+CGG - chr6.3:2589834-2589853 MS.gene34167:CDS 45.0%
TATACTGGCCGGGAACAAAA+TGG + chr6.3:2590800-2590819 None:intergenic 45.0%
TCTTGGAGCTTCCTCTTCAT+CGG + chr6.3:2590723-2590742 None:intergenic 45.0%
TTGGTCCTTGTAAGGTTCGT+TGG - chr6.3:2591617-2591636 MS.gene34167:CDS 45.0%
TTGTATGATGTGCACAACGC+AGG - chr6.3:2592370-2592389 MS.gene34167:CDS 45.0%
! AACAGGAAGAAGTGCATCCT+CGG + chr6.3:2590757-2590776 None:intergenic 45.0%
! CCCATTTTACTTGTCCTCTC+TGG - chr6.3:2591268-2591287 MS.gene34167:intron 45.0%
! CTTCTCCTCTAGGAATAGGA+GGG - chr6.3:2592073-2592092 MS.gene34167:intron 45.0%
! GACACTGATCATCTGGAGTT+CGG + chr6.3:2592053-2592072 None:intergenic 45.0%
! GATTGGTTGTGGACAGAAGA+AGG - chr6.3:2590647-2590666 MS.gene34167:intron 45.0%
! GGTACGAAGTAAGTTGGGAA+AGG + chr6.3:2592467-2592486 None:intergenic 45.0%
! TGTCCTTCTCCTCTAGGAAT+AGG - chr6.3:2592069-2592088 MS.gene34167:intron 45.0%
!! AGCCTGAAGTGGGTCATTTT+AGG - chr6.3:2590685-2590704 MS.gene34167:intron 45.0%
!! GCCTGAAGTGGGTCATTTTA+GGG - chr6.3:2590686-2590705 MS.gene34167:intron 45.0%
ACAAAGTTCCCTGTAGCTCC+TGG + chr6.3:2592398-2592417 None:intergenic 50.0%
ACACCGAATTCACGACGAAC+TGG - chr6.3:2589884-2589903 MS.gene34167:CDS 50.0%
CAAAGTTCCCTGTAGCTCCT+GGG + chr6.3:2592397-2592416 None:intergenic 50.0%
CCTCCTATTCCTAGAGGAGA+AGG + chr6.3:2592075-2592094 None:intergenic 50.0%
CTCAAGGAGTTCCGATGAAG+AGG - chr6.3:2590709-2590728 MS.gene34167:CDS 50.0%
GAGGATGCACTTCTTCCTGT+TGG - chr6.3:2590756-2590775 MS.gene34167:CDS 50.0%
GATCAGTGTCCTTCTCCTCT+AGG - chr6.3:2592063-2592082 MS.gene34167:intron 50.0%
GCCCTAAAATGACCCACTTC+AGG + chr6.3:2590690-2590709 None:intergenic 50.0%
GGACTCCAACGAACCTTACA+AGG + chr6.3:2591625-2591644 None:intergenic 50.0%
GGAGAAGGACACTGATCATC+TGG + chr6.3:2592060-2592079 None:intergenic 50.0%
GTTTCCAGGGTGTGATGACA+CGG - chr6.3:2591521-2591540 MS.gene34167:CDS 50.0%
TTTGAATTCCCGTGGGATGC+TGG + chr6.3:2591565-2591584 None:intergenic 50.0%
TTTGATGTGGGTGAAAGGCC+AGG - chr6.3:2591891-2591910 MS.gene34167:intron 50.0%
! ATGACACGGTGGGATTTTGC+TGG - chr6.3:2591535-2591554 MS.gene34167:CDS 50.0%
! CCTTCTCCTCTAGGAATAGG+AGG - chr6.3:2592072-2592091 MS.gene34167:intron 50.0%
!! GAATTCGGTGTCATCACGCT+AGG + chr6.3:2589875-2589894 None:intergenic 50.0%
!!! GTGGGTCATTTTAGGGCTCA+AGG - chr6.3:2590693-2590712 MS.gene34167:intron 50.0%
AAGATGCCAGGGAGAATGGG+TGG - chr6.3:2591814-2591833 MS.gene34167:intron 55.0%
AGATGCCAGGGAGAATGGGT+GGG - chr6.3:2591815-2591834 MS.gene34167:intron 55.0%
CCTCGGTCACTCGAAACTCT+TGG + chr6.3:2590740-2590759 None:intergenic 55.0%
GGAGAATGGGTGGGAAGCAA+AGG - chr6.3:2591824-2591843 MS.gene34167:intron 55.0%
GTGCCACGGGAAATTGTCGA+AGG + chr6.3:2589796-2589815 None:intergenic 55.0%
TCGCCTTCGACAATTTCCCG+TGG - chr6.3:2589790-2589809 MS.gene34167:CDS 55.0%
! ACACGGTGGGATTTTGCTGG+AGG - chr6.3:2591538-2591557 MS.gene34167:CDS 55.0%
! CCAAGAGTTTCGAGTGACCG+AGG - chr6.3:2590737-2590756 MS.gene34167:CDS 55.0%
ATGTGCACAACGCAGGTCCC+AGG - chr6.3:2592377-2592396 MS.gene34167:CDS 60.0%
CCAGGGTGTGATGACACGGT+GGG - chr6.3:2591525-2591544 MS.gene34167:CDS 60.0%
TCCAGGGTGTGATGACACGG+TGG - chr6.3:2591524-2591543 MS.gene34167:CDS 60.0%
TGCTTCCCACCCATTCTCCC+TGG + chr6.3:2591823-2591842 None:intergenic 60.0%
! AAATCGTGGCAGCGGTGCCA+CGG + chr6.3:2589810-2589829 None:intergenic 60.0%
ACGCAGGTCCCAGGAGCTAC+AGG - chr6.3:2592386-2592405 MS.gene34167:CDS 65.0%
CCCACCGTGTCATCACACCC+TGG + chr6.3:2591528-2591547 None:intergenic 65.0%
CGCAGGTCCCAGGAGCTACA+GGG - chr6.3:2592387-2592406 MS.gene34167:CDS 65.0%
CTGGAGGTCCAGCATCCCAC+GGG - chr6.3:2591554-2591573 MS.gene34167:CDS 65.0%
GCTGGAGGTCCAGCATCCCA+CGG - chr6.3:2591553-2591572 MS.gene34167:CDS 65.0%
!! AATCGTGGCAGCGGTGCCAC+GGG + chr6.3:2589809-2589828 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 2589761 2592565 2589761 ID=MS.gene34167
chr6.3 mRNA 2589761 2592565 2589761 ID=MS.gene34167.t1;Parent=MS.gene34167
chr6.3 exon 2592281 2592565 2592281 ID=MS.gene34167.t1.exon1;Parent=MS.gene34167.t1
chr6.3 CDS 2592281 2592565 2592281 ID=cds.MS.gene34167.t1;Parent=MS.gene34167.t1
chr6.3 exon 2591469 2591678 2591469 ID=MS.gene34167.t1.exon2;Parent=MS.gene34167.t1
chr6.3 CDS 2591469 2591678 2591469 ID=cds.MS.gene34167.t1;Parent=MS.gene34167.t1
chr6.3 exon 2590696 2590797 2590696 ID=MS.gene34167.t1.exon3;Parent=MS.gene34167.t1
chr6.3 CDS 2590696 2590797 2590696 ID=cds.MS.gene34167.t1;Parent=MS.gene34167.t1
chr6.3 exon 2590414 2590527 2590414 ID=MS.gene34167.t1.exon4;Parent=MS.gene34167.t1
chr6.3 CDS 2590414 2590527 2590414 ID=cds.MS.gene34167.t1;Parent=MS.gene34167.t1
chr6.3 exon 2589761 2589934 2589761 ID=MS.gene34167.t1.exon5;Parent=MS.gene34167.t1
chr6.3 CDS 2589761 2589934 2589761 ID=cds.MS.gene34167.t1;Parent=MS.gene34167.t1
Gene Sequence

>MS.gene34167

ATGCTGGCGTTTTCGAGAGGTGTAGTTTCTCGCCTTCGACAATTTCCCGTGGCACCGCTGCCACGATTTTTTAGTTCGGATGTGGAGACTATACGGACGATTGAAGCAAAACCTAGCGTGATGACACCGAATTCACGACGAACTGGTCTTGTAGCTGTAAAATGTGGAATGACTGCACATTGGGATAAATGGGGTGCTAGAATTCCGATTTCTATTCTTTGGGTTGATGACAACATTGTCTCTCAAGTCAAAACTCCAGAGAAGGAAGGTTATTGTTCTCTCCAGGTGCGTTCTGCTTCATTATCAGGATCAAATTCAATGTTTCTAATGAGTTTAATGTGGATTAACTCAGTTCATAGTTACTCATGGAATAACTTAATCTAATGCAGTTTAAATTTCTTTCGAAAATTTGTGTAGAAGAAATTAAAACTGTTTGATACTTCATTAAAGAACTCCAAATGAACGTATAATAATTTTTTTTTTAAATGTAAATAAACATCAACTGTTAGATTACAATGTACAAATTTTGGATTTATATGAAACTGTGTGCTTGATCATTAACATGATATAACGGTAATATCAGGTTAGATTGGTGAAATAATACAGTAAAAAAGCATAATATGGAGATAATATTCTGCTCGATTGGTGAAATTTATCAGGTTAGATTGGTGAAATAATACAGTAAAAAAACAATATTAATATGGAGATAATATTCGGCTCGATTGGTGAAATTTAATGTTTATAATGAATGAGTAATGAGTTATTAAGTGGAGTTATTCAGCCCAGAGTTACTCTTACAATAACTTGAATTGTCTTCTCTATATATATGTATATGAAGTTAAATATGTATCTAATTATAGACATGTTTGATACTTTGTTTTAGTTAGATTGGTTGTGGACAGAAGAAGGAGAAACACTTGACAAAGCCTGAAGTGGGTCATTTTAGGGCTCAAGGAGTTCCGATGAAGAGGAAGCTCCAAGAGTTTCGAGTGACCGAGGATGCACTTCTTCCTGTTGGTACATCGCTTAATGTTCGCCATTTTGTTCCCGGCCAGTATATTGACATCACAGGAATCACTAAAGGAAAAGGTTTTCAGGTATTTTTCTTTACCTCACACTATTTACTTCTCATCTCCTTTTCCTTATAAATAATGATCTCTCTCTTACATTCAGTATGTAGTATTTGTTCCTGCATGTGTCTGTATAATAATAGTTGAGTTTAATGCATTGTGTTCTTTGTTTGTTTGTTGACATGATTAGTTATTATTCCGTCGAAGAATTTATTAAATTTGTATTTGTAAGATTAAAATGGATTACACCAATTGGTCAGAAACAATAATAAGTTGACAGATTCAAACATGTATTATATGTCATTATTTATTATTTGGTTAATTGTTTTGTTTCACCATTTATATATTTCTGCACAATCATCGGTGTTCAGTAGTTTCAACTTTCATCTTGCATGTACAAGTTAAGGTAACGTTGCAGCTTTATTCTTTTCTCTCGTCCCATTTTACTTGTCCTCTCTGGAAATTTGAAAAACTAAATGTTGGTTTGCATGCTTTTTAAGGGGTGGTTTATTGTTTATTTTTCTGTTTCTGTTTCTTATTTTAATTGTAATTCGTATATGACTGTGGATACTTCTCTGTTTCATGTTGAAACCTTCCATTGAGTAAATCAGGCAATAGCATGATACTACCATTTTTTACAGATCTATGTCTTTTCAGTTACACGGGGTGTTGTTTTAAATTATCTTTTCTGTTTCCAGGGTGTGATGACACGGTGGGATTTTGCTGGAGGTCCAGCATCCCACGGGAATTCAAAAGCACATAAAACCATGGGATCTACAGGAATGCTTGGTCCTTGTAAGGTTCGTTGGAGTCCTTAAGATTAGTATTCTTTCTTAATTAATACAGCTTTCTGTATTTGTATATATTGAAAATATGTTAGATTGACGGTCTATACAAGTTTATTTTCTTTACATTAATGTTTCTCACCGACAGTTGTTATGATAATATATTTTTTCCTCACTGTTCAGGTTTTTAAAGGTAAAAAGATGCCAGGGAGAATGGGTGGGAAGCAAAGGACAGTAAAAAATGTATGGGTCTACAAAATCGATCCTGCAAGAAATTTGATGTGGGTGAAAGGCCAGGTAATTGTTTTTATATACTTATTATATTATTATTCACATTAATTTATAAATCTGGAACTATAGGGCATGAACCATCTTATATCACCTCAGACAAAAATCAAGTAATTAAACCAAAGTGGTTAATGAGCTTCCTTTTACCGAACTCCAGATGATCAGTGTCCTTCTCCTCTAGGAATAGGAGGGTTTAGACATAAAAAAATCACCTCGGACACTTGTCTATGAATGATTTTGAATTTGTATTAAATTTGATATGAATTCCACTTAATTCACACTTGAAGTACTGCTATGTTTGTATGAGTTACAAAACTTTGTATGTATAAAACTTGCGAGTAATTATATCATTAAGAGATCGATGGTGCATCAGTAATAGTTTTGGATCTATTTTAATAGCTCAATTATCCATTAACTGGCTTAAATATTTGGAATCTCAGCTTTATTGCGGACTGCTTATTTCTCATTGTATGATGTGCACAACGCAGGTCCCAGGAGCTACAGGGAACTTTGTTTTTATAAAAGATGCAGTCTATGAAAAACCTGACACGTCTATACTTCCTTTCCCAACTTACTTCGTACCAGAAGATGAAGATACTGATGATATGAAACCTTTGATTGCTGATCTTGGAGATGTTGATCCATTTATGGTTGTTGATTAA
Protein sequence

>MS.gene34167.t1

MLAFSRGVVSRLRQFPVAPLPRFFSSDVETIRTIEAKPSVMTPNSRRTGLVAVKCGMTAHWDKWGARIPISILWVDDNIVSQVKTPEKEGYCSLQIGCGQKKEKHLTKPEVGHFRAQGVPMKRKLQEFRVTEDALLPVGTSLNVRHFVPGQYIDITGITKGKGFQGVMTRWDFAGGPASHGNSKAHKTMGSTGMLGPCKVFKGKKMPGRMGGKQRTVKNVWVYKIDPARNLMWVKGQVPGATGNFVFIKDAVYEKPDTSILPFPTYFVPEDEDTDDMKPLIADLGDVDPFMVVD