Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42247.t1 | XP_003624883.1 | 99.5 | 203 | 1 | 0 | 1 | 203 | 1 | 203 | 4.60E-73 | 284.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42247.t1 | Q9M612 | 80.6 | 201 | 32 | 3 | 4 | 202 | 9 | 204 | 5.0e-52 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42247.t1 | G7L4T7 | 99.5 | 203 | 1 | 0 | 1 | 203 | 1 | 203 | 3.3e-73 | 284.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene42247 | 0.818696 | 1.71E-52 | -1.69E-46 |
| MS.gene050277 | MS.gene42247 | 0.840294 | 9.48E-58 | -1.69E-46 |
| MS.gene050290 | MS.gene42247 | 0.815665 | 8.23E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene42247 | 0.852782 | 3.68E-61 | -1.69E-46 |
| MS.gene050752 | MS.gene42247 | 0.851717 | 7.40E-61 | -1.69E-46 |
| MS.gene050838 | MS.gene42247 | 0.860295 | 2.28E-63 | -1.69E-46 |
| MS.gene050945 | MS.gene42247 | 0.81335 | 2.68E-51 | -1.69E-46 |
| MS.gene050955 | MS.gene42247 | 0.826388 | 2.79E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene42247 | 0.815909 | 7.26E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene42247 | 0.843407 | 1.43E-58 | -1.69E-46 |
| MS.gene051330 | MS.gene42247 | 0.843001 | 1.83E-58 | -1.69E-46 |
| MS.gene051343 | MS.gene42247 | 0.826327 | 2.88E-54 | -1.69E-46 |
| MS.gene051451 | MS.gene42247 | 0.834114 | 3.61E-56 | -1.69E-46 |
| MS.gene051676 | MS.gene42247 | 0.813546 | 2.42E-51 | -1.69E-46 |
| MS.gene051746 | MS.gene42247 | 0.873322 | 1.61E-67 | -1.69E-46 |
| MS.gene051748 | MS.gene42247 | 0.877652 | 5.29E-69 | -1.69E-46 |
| MS.gene051756 | MS.gene42247 | 0.823468 | 1.36E-53 | -1.69E-46 |
| MS.gene051850 | MS.gene42247 | 0.822748 | 2.01E-53 | -1.69E-46 |
| MS.gene05188 | MS.gene42247 | 0.855091 | 7.96E-62 | -1.69E-46 |
| MS.gene051903 | MS.gene42247 | 0.890868 | 6.67E-74 | -1.69E-46 |
| MS.gene051975 | MS.gene42247 | 0.862771 | 4.00E-64 | -1.69E-46 |
| MS.gene052818 | MS.gene42247 | -0.800316 | 1.53E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene42247 | 0.892745 | 1.20E-74 | -1.69E-46 |
| MS.gene053058 | MS.gene42247 | 0.846409 | 2.21E-59 | -1.69E-46 |
| MS.gene053109 | MS.gene42247 | 0.860984 | 1.41E-63 | -1.69E-46 |
| MS.gene053564 | MS.gene42247 | 0.832406 | 9.63E-56 | -1.69E-46 |
| MS.gene053952 | MS.gene42247 | 0.886172 | 4.31E-72 | -1.69E-46 |
| MS.gene054403 | MS.gene42247 | 0.852729 | 3.81E-61 | -1.69E-46 |
| MS.gene05469 | MS.gene42247 | 0.860561 | 1.90E-63 | -1.69E-46 |
| MS.gene054937 | MS.gene42247 | 0.848023 | 7.98E-60 | -1.69E-46 |
| MS.gene055424 | MS.gene42247 | 0.802376 | 5.78E-49 | -1.69E-46 |
| MS.gene055603 | MS.gene42247 | 0.805728 | 1.16E-49 | -1.69E-46 |
| MS.gene056075 | MS.gene42247 | 0.866719 | 2.32E-65 | -1.69E-46 |
| MS.gene056091 | MS.gene42247 | 0.819113 | 1.38E-52 | -1.69E-46 |
| MS.gene056215 | MS.gene42247 | 0.805334 | 1.40E-49 | -1.69E-46 |
| MS.gene056403 | MS.gene42247 | 0.829806 | 4.19E-55 | -1.69E-46 |
| MS.gene056605 | MS.gene42247 | 0.837298 | 5.64E-57 | -1.69E-46 |
| MS.gene056631 | MS.gene42247 | 0.858297 | 9.08E-63 | -1.69E-46 |
| MS.gene056896 | MS.gene42247 | 0.823949 | 1.05E-53 | -1.69E-46 |
| MS.gene05689 | MS.gene42247 | 0.809922 | 1.49E-50 | -1.69E-46 |
| MS.gene056986 | MS.gene42247 | 0.863542 | 2.31E-64 | -1.69E-46 |
| MS.gene057094 | MS.gene42247 | 0.900754 | 5.34E-78 | -1.69E-46 |
| MS.gene057206 | MS.gene42247 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene42247 | 0.815934 | 7.17E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene42247 | 0.839922 | 1.19E-57 | -1.69E-46 |
| MS.gene05781 | MS.gene42247 | 0.802421 | 5.65E-49 | -1.69E-46 |
| MS.gene057999 | MS.gene42247 | 0.827775 | 1.30E-54 | -1.69E-46 |
| MS.gene058074 | MS.gene42247 | 0.815605 | 8.48E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene42247 | 0.84318 | 1.64E-58 | -1.69E-46 |
| MS.gene058354 | MS.gene42247 | 0.82219 | 2.70E-53 | -1.69E-46 |
| MS.gene058364 | MS.gene42247 | 0.814397 | 1.57E-51 | -1.69E-46 |
| MS.gene059146 | MS.gene42247 | 0.838651 | 2.53E-57 | -1.69E-46 |
| MS.gene059227 | MS.gene42247 | 0.853341 | 2.55E-61 | -1.69E-46 |
| MS.gene059726 | MS.gene42247 | 0.810686 | 1.02E-50 | -1.69E-46 |
| MS.gene06001 | MS.gene42247 | 0.903717 | 2.60E-79 | -1.69E-46 |
| MS.gene06011 | MS.gene42247 | 0.862714 | 4.17E-64 | -1.69E-46 |
| MS.gene060429 | MS.gene42247 | 0.814691 | 1.35E-51 | -1.69E-46 |
| MS.gene060465 | MS.gene42247 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene060763 | MS.gene42247 | 0.849971 | 2.30E-60 | -1.69E-46 |
| MS.gene060830 | MS.gene42247 | 0.851405 | 9.07E-61 | -1.69E-46 |
| MS.gene061145 | MS.gene42247 | 0.825665 | 4.14E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene50742 | MS.gene42247 | PPI |
| MS.gene73089 | MS.gene42247 | PPI |
| MS.gene044693 | MS.gene42247 | PPI |
| MS.gene039827 | MS.gene42247 | PPI |
| MS.gene003688 | MS.gene42247 | PPI |
| MS.gene23317 | MS.gene42247 | PPI |
| MS.gene003685 | MS.gene42247 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42247.t1 | MTR_7g088680 | 99.507 | 203 | 1 | 0 | 1 | 203 | 1 | 203 | 7.82e-146 | 404 |
| MS.gene42247.t1 | MTR_3g092970 | 72.185 | 151 | 36 | 2 | 59 | 203 | 77 | 227 | 1.49e-67 | 206 |
| MS.gene42247.t1 | MTR_3g092980 | 69.333 | 150 | 41 | 2 | 59 | 203 | 69 | 218 | 8.76e-59 | 184 |
| MS.gene42247.t1 | MTR_3g092980 | 69.333 | 150 | 41 | 2 | 59 | 203 | 71 | 220 | 1.03e-58 | 184 |
| MS.gene42247.t1 | MTR_3g093750 | 56.303 | 119 | 41 | 3 | 87 | 203 | 418 | 527 | 1.19e-29 | 114 |
| MS.gene42247.t1 | MTR_1g006975 | 88.636 | 44 | 5 | 0 | 51 | 94 | 1898 | 1941 | 1.09e-16 | 78.2 |
| MS.gene42247.t1 | MTR_3g093720 | 78.571 | 42 | 9 | 0 | 161 | 202 | 215 | 256 | 5.37e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42247.t1 | AT3G12390 | 72.500 | 200 | 52 | 2 | 6 | 203 | 5 | 203 | 2.03e-77 | 231 |
| MS.gene42247.t1 | AT5G13850 | 70.000 | 210 | 50 | 3 | 1 | 203 | 1 | 204 | 2.35e-75 | 226 |
| MS.gene42247.t1 | AT3G49470 | 62.000 | 200 | 64 | 4 | 10 | 203 | 24 | 217 | 2.66e-67 | 206 |
| MS.gene42247.t1 | AT3G49470 | 61.622 | 185 | 60 | 3 | 16 | 194 | 29 | 208 | 1.50e-61 | 191 |
| MS.gene42247.t1 | AT4G10480 | 61.951 | 205 | 65 | 3 | 6 | 202 | 11 | 210 | 4.77e-61 | 189 |
| MS.gene42247.t1 | AT4G10480 | 69.737 | 152 | 36 | 2 | 59 | 202 | 62 | 211 | 8.77e-61 | 189 |
| MS.gene42247.t1 | AT1G33040 | 64.238 | 151 | 48 | 2 | 59 | 203 | 59 | 209 | 7.34e-59 | 184 |
Find 45 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGACACCTACATTATATT+CGG | 0.304764 | 7.4:+19767611 | MS.gene42247:CDS |
| TCGTCTACATCCTCATCTTC+TGG | 0.324398 | 7.4:-19767746 | None:intergenic |
| GCACCCGCATTGGTCAAATT+AGG | 0.324435 | 7.4:-19767698 | None:intergenic |
| GAGCAGCAAGAAGCTCTTCT+TGG | 0.330866 | 7.4:-19765997 | None:intergenic |
| CAAGAAGCTCTTCTTGGGTT+CGG | 0.345174 | 7.4:-19765991 | None:intergenic |
| GGAGCAATACCAGAGGATTC+TGG | 0.349709 | 7.4:-19767725 | None:intergenic |
| GCTTTAACAGCTCTTGATCT+TGG | 0.356165 | 7.4:-19767821 | None:intergenic |
| AGACATTGTTGCTGCCATTA+TGG | 0.359211 | 7.4:+19767862 | MS.gene42247:CDS |
| CTTGGAATGAAAGCTGTTAC+TGG | 0.368859 | 7.4:+19767411 | MS.gene42247:CDS |
| GTTGGACTCTTGAAAACATC+TGG | 0.370830 | 7.4:-19767587 | None:intergenic |
| AAGAAGCTCTTCTTGGGTTC+GGG | 0.408224 | 7.4:-19765990 | None:intergenic |
| CGCAAGGCAATGCTTAAACT+TGG | 0.418058 | 7.4:+19767393 | MS.gene42247:CDS |
| CTGACACCTACATTATATTC+GGG | 0.423367 | 7.4:+19767612 | MS.gene42247:CDS |
| TTAATTTGTTAGCTCCATAA+TGG | 0.425574 | 7.4:-19767876 | None:intergenic |
| TTCTTGGGTTCGGGCAGTCA+TGG | 0.436661 | 7.4:-19765981 | None:intergenic |
| CACCACCAACTCAATATCCT+TGG | 0.437037 | 7.4:-19767783 | None:intergenic |
| AGCAGCAAGAAGCTCTTCTT+GGG | 0.455992 | 7.4:-19765996 | None:intergenic |
| TTCTGGTTTCGCACCCGCAT+TGG | 0.470492 | 7.4:-19767708 | None:intergenic |
| TCAGGCTGCAGAGCAGTTCA+AGG | 0.470685 | 7.4:+19767673 | MS.gene42247:CDS |
| TCCCAAGGATATTGAGTTGG+TGG | 0.515624 | 7.4:+19767781 | MS.gene42247:CDS |
| GCTCCTAATTTGACCAATGC+GGG | 0.519514 | 7.4:+19767695 | MS.gene42247:CDS |
| ATAATGTAGGTGTCAGAAGT+TGG | 0.520697 | 7.4:-19767605 | None:intergenic |
| TCATCGTCATCCTCAACTAC+AGG | 0.523575 | 7.4:-19766613 | None:intergenic |
| ACCACCAACTCAATATCCTT+GGG | 0.531886 | 7.4:-19767782 | None:intergenic |
| GATGAGGATGTAGACGAGAC+TGG | 0.538671 | 7.4:+19767752 | MS.gene42247:CDS |
| GGATTTGAAGGTGATGCATC+TGG | 0.544074 | 7.4:+19767336 | MS.gene42247:intron |
| GGCAGCAACAATGTCTCCAT+TGG | 0.548006 | 7.4:-19767855 | None:intergenic |
| GAGTTGGTGGTGACTCAAGC+TGG | 0.556994 | 7.4:+19767794 | MS.gene42247:CDS |
| GGTGCGAAACCAGAATCCTC+TGG | 0.566739 | 7.4:+19767716 | MS.gene42247:CDS |
| TGACGAAGACGACGATGATG+AGG | 0.584480 | 7.4:+19766651 | MS.gene42247:CDS |
| GCATGATGAGCCTGTAGTTG+AGG | 0.588135 | 7.4:+19766603 | MS.gene42247:intron |
| AAAGCTCTCAAAGCTGCCAA+TGG | 0.592851 | 7.4:+19767839 | MS.gene42247:CDS |
| GAGCTCACAGCTACAAACTC+AGG | 0.597975 | 7.4:+19767655 | MS.gene42247:CDS |
| CGAGACTGGTGTAGATCCCA+AGG | 0.607645 | 7.4:+19767766 | MS.gene42247:CDS |
| TGGTATTGCTCCAGAAGATG+AGG | 0.607813 | 7.4:+19767736 | MS.gene42247:CDS |
| AGCTTCCCCGAATATAATGT+AGG | 0.614771 | 7.4:-19767618 | None:intergenic |
| AGATCCCAAGGATATTGAGT+TGG | 0.629225 | 7.4:+19767778 | MS.gene42247:CDS |
| TTGAAGGTGATGCATCTGGT+AGG | 0.643359 | 7.4:+19767340 | MS.gene42247:CDS |
| GGCTCCTAATTTGACCAATG+CGG | 0.643666 | 7.4:+19767694 | MS.gene42247:CDS |
| AAGTGAAAAGAAGAGTCGCA+AGG | 0.645070 | 7.4:+19767377 | MS.gene42247:CDS |
| ATCTTCTGGAGCAATACCAG+AGG | 0.670950 | 7.4:-19767732 | None:intergenic |
| TGACACCTACATTATATTCG+GGG | 0.682224 | 7.4:+19767613 | MS.gene42247:CDS |
| TGACGATGATGAGGACGATG+AGG | 0.719627 | 7.4:+19766627 | MS.gene42247:CDS |
| AGTTGAGGATGACGATGATG+AGG | 0.722265 | 7.4:+19766618 | MS.gene42247:CDS |
| GAGGACGATGACAATGCTGA+AGG | 0.723088 | 7.4:+19766670 | MS.gene42247:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAATAATAAATTGG+AGG | - | chr7.4:19766068-19766087 | None:intergenic | 10.0% |
| !! | TGTTACAATGAAAAAAAAAA+TGG | + | chr7.4:19766335-19766354 | MS.gene42247:intron | 15.0% |
| !!! | TTTATGTATGAAATGTTTTA+GGG | + | chr7.4:19766162-19766181 | MS.gene42247:intron | 15.0% |
| !!! | TTTTTTTTTAGTTCAGTTTT+TGG | + | chr7.4:19766080-19766099 | MS.gene42247:intron | 15.0% |
| !! | TGTTCTACAAAATTTCAAAT+GGG | + | chr7.4:19766849-19766868 | MS.gene42247:intron | 20.0% |
| !! | TTCATTTAAAAGTTCATCAT+TGG | + | chr7.4:19766938-19766957 | MS.gene42247:intron | 20.0% |
| !! | TTCTTGTAGTAAATTGTAAT+TGG | + | chr7.4:19766425-19766444 | MS.gene42247:intron | 20.0% |
| !! | TTGTTCTACAAAATTTCAAA+TGG | + | chr7.4:19766848-19766867 | MS.gene42247:intron | 20.0% |
| !!! | ATTTACATGTTTTTGAAATC+AGG | + | chr7.4:19766246-19766265 | MS.gene42247:intron | 20.0% |
| !!! | CTTTATGTATGAAATGTTTT+AGG | + | chr7.4:19766161-19766180 | MS.gene42247:intron | 20.0% |
| !!! | GGTTTTATGAATAAATTGAA+AGG | + | chr7.4:19766296-19766315 | MS.gene42247:intron | 20.0% |
| !!! | TTTACATGTTTTTGAAATCA+GGG | + | chr7.4:19766247-19766266 | MS.gene42247:intron | 20.0% |
| !!! | TTTTTCTGTTGTATCAATAT+TGG | + | chr7.4:19767501-19767520 | MS.gene42247:intron | 20.0% |
| !!! | TTTTTTTCTTTTTCTATTGC+AGG | + | chr7.4:19767315-19767334 | MS.gene42247:intron | 20.0% |
| ! | ACTGTGTATGAAATGATTTA+GGG | + | chr7.4:19766195-19766214 | MS.gene42247:intron | 25.0% |
| ! | ATAGCATTCATTGAGTAATT+TGG | + | chr7.4:19766766-19766785 | MS.gene42247:intron | 25.0% |
| ! | CAAAAACTAAACCAATTACT+TGG | - | chr7.4:19766124-19766143 | None:intergenic | 25.0% |
| ! | CAACAAAGTGAATTAATGTA+CGG | + | chr7.4:19766801-19766820 | MS.gene42247:intron | 25.0% |
| ! | TACTGTGTATGAAATGATTT+AGG | + | chr7.4:19766194-19766213 | MS.gene42247:intron | 25.0% |
| ! | TTATTCATAAAACCATGACA+TGG | - | chr7.4:19766290-19766309 | None:intergenic | 25.0% |
| ! | TTGTAAACTTATAAGTGTAG+TGG | + | chr7.4:19766517-19766536 | MS.gene42247:intron | 25.0% |
| ! | TTGTATTTAGTGTATGTTGA+GGG | + | chr7.4:19767079-19767098 | MS.gene42247:intron | 25.0% |
| ! | TTTGTATTTAGTGTATGTTG+AGG | + | chr7.4:19767078-19767097 | MS.gene42247:intron | 25.0% |
| !! | TACAGATGAATTTGTTCTTA+TGG | + | chr7.4:19766480-19766499 | MS.gene42247:intron | 25.0% |
| !! | TAGTTTGATTTCCAAGTAAT+TGG | + | chr7.4:19766110-19766129 | MS.gene42247:intron | 25.0% |
| !!! | GGTTTAGTTTTTGATGTTTT+TGG | + | chr7.4:19766131-19766150 | MS.gene42247:intron | 25.0% |
| !!! | TTAATTTGTTAGCTCCATAA+TGG | - | chr7.4:19767879-19767898 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTTGCATGAACTA+AGG | + | chr7.4:19767269-19767288 | MS.gene42247:intron | 25.0% |
| ACTGTCATAAATATTGTGTG+TGG | + | chr7.4:19767153-19767172 | MS.gene42247:intron | 30.0% | |
| ATGTATCTGTGTATCTATAG+AGG | + | chr7.4:19766389-19766408 | MS.gene42247:intron | 30.0% | |
| CAAAATACATGTACAATGTC+AGG | + | chr7.4:19767213-19767232 | MS.gene42247:intron | 30.0% | |
| CATTCATTGAGTAATTTGGT+AGG | + | chr7.4:19766770-19766789 | MS.gene42247:intron | 30.0% | |
| TCTGACACCTACATTATATT+CGG | + | chr7.4:19767611-19767630 | MS.gene42247:CDS | 30.0% | |
| TTGAGGGTTTAACAAAATCA+CGG | + | chr7.4:19767095-19767114 | MS.gene42247:intron | 30.0% | |
| ! | CTGACATTGTACATGTATTT+TGG | - | chr7.4:19767215-19767234 | None:intergenic | 30.0% |
| ! | TTTTCTATTGCAGGATTTGA+AGG | + | chr7.4:19767324-19767343 | MS.gene42247:intron | 30.0% |
| !!! | CATGTATTTTGGTTGTATTC+TGG | - | chr7.4:19767204-19767223 | None:intergenic | 30.0% |
| !!! | GTTTTTGAAATCAGGGTTTT+TGG | + | chr7.4:19766254-19766273 | MS.gene42247:intron | 30.0% |
| ATAATGTAGGTGTCAGAAGT+TGG | - | chr7.4:19767608-19767627 | None:intergenic | 35.0% | |
| ATGAACTAAGGCTACAATGA+TGG | + | chr7.4:19767281-19767300 | MS.gene42247:intron | 35.0% | |
| CTGACACCTACATTATATTC+GGG | + | chr7.4:19767612-19767631 | MS.gene42247:CDS | 35.0% | |
| TATTCTGGTACAGACTAATC+TGG | - | chr7.4:19767189-19767208 | None:intergenic | 35.0% | |
| TGACACCTACATTATATTCG+GGG | + | chr7.4:19767613-19767632 | MS.gene42247:CDS | 35.0% | |
| TGAGGGTTTAACAAAATCAC+GGG | + | chr7.4:19767096-19767115 | MS.gene42247:intron | 35.0% | |
| ! | AACTTGCCTCATTTTGCATT+TGG | + | chr7.4:19766730-19766749 | MS.gene42247:intron | 35.0% |
| AAGTGAAAAGAAGAGTCGCA+AGG | + | chr7.4:19767377-19767396 | MS.gene42247:CDS | 40.0% | |
| ACCACCAACTCAATATCCTT+GGG | - | chr7.4:19767785-19767804 | None:intergenic | 40.0% | |
| ACGAACAAGATCTGATGAAC+AGG | - | chr7.4:19767557-19767576 | None:intergenic | 40.0% | |
| AGACATTGTTGCTGCCATTA+TGG | + | chr7.4:19767862-19767881 | MS.gene42247:CDS | 40.0% | |
| AGATCCCAAGGATATTGAGT+TGG | + | chr7.4:19767778-19767797 | MS.gene42247:CDS | 40.0% | |
| AGCTTCCCCGAATATAATGT+AGG | - | chr7.4:19767621-19767640 | None:intergenic | 40.0% | |
| CCTTCACCAAATGCAAAATG+AGG | - | chr7.4:19766739-19766758 | None:intergenic | 40.0% | |
| CTTGGAATGAAAGCTGTTAC+TGG | + | chr7.4:19767411-19767430 | MS.gene42247:CDS | 40.0% | |
| GCTTTAACAGCTCTTGATCT+TGG | - | chr7.4:19767824-19767843 | None:intergenic | 40.0% | |
| GGATTTGAATGACCATGTCA+TGG | + | chr7.4:19766275-19766294 | MS.gene42247:intron | 40.0% | |
| GTTGGACTCTTGAAAACATC+TGG | - | chr7.4:19767590-19767609 | None:intergenic | 40.0% | |
| TCAAATGGGTGTTTCATCTG+AGG | + | chr7.4:19766863-19766882 | MS.gene42247:intron | 40.0% | |
| TTGAAAGTCATGCAGAACAG+TGG | - | chr7.4:19767241-19767260 | None:intergenic | 40.0% | |
| ! | CTTTTCACTTCTGGTCTGTT+TGG | - | chr7.4:19767367-19767386 | None:intergenic | 40.0% |
| !! | CCTCATTTTGCATTTGGTGA+AGG | + | chr7.4:19766736-19766755 | MS.gene42247:intron | 40.0% |
| AAACCCACTGCGACAAATTG+TGG | + | chr7.4:19767129-19767148 | MS.gene42247:intron | 45.0% | |
| AAAGCTCTCAAAGCTGCCAA+TGG | + | chr7.4:19767839-19767858 | MS.gene42247:CDS | 45.0% | |
| AAGAAGCTCTTCTTGGGTTC+GGG | - | chr7.4:19765993-19766012 | None:intergenic | 45.0% | |
| AGCAGCAAGAAGCTCTTCTT+GGG | - | chr7.4:19765999-19766018 | None:intergenic | 45.0% | |
| AGTACCACAATTTGTCGCAG+TGG | - | chr7.4:19767136-19767155 | None:intergenic | 45.0% | |
| AGTTGAGGATGACGATGATG+AGG | + | chr7.4:19766618-19766637 | MS.gene42247:CDS | 45.0% | |
| CAAGAAGCTCTTCTTGGGTT+CGG | - | chr7.4:19765994-19766013 | None:intergenic | 45.0% | |
| CACCACCAACTCAATATCCT+TGG | - | chr7.4:19767786-19767805 | None:intergenic | 45.0% | |
| CGCAAGGCAATGCTTAAACT+TGG | + | chr7.4:19767393-19767412 | MS.gene42247:CDS | 45.0% | |
| GCTCCTAATTTGACCAATGC+GGG | + | chr7.4:19767695-19767714 | MS.gene42247:CDS | 45.0% | |
| GGATTTGAAGGTGATGCATC+TGG | + | chr7.4:19767336-19767355 | MS.gene42247:intron | 45.0% | |
| GGCTCCTAATTTGACCAATG+CGG | + | chr7.4:19767694-19767713 | MS.gene42247:CDS | 45.0% | |
| GTACCACAATTTGTCGCAGT+GGG | - | chr7.4:19767135-19767154 | None:intergenic | 45.0% | |
| TCATCGTCATCCTCAACTAC+AGG | - | chr7.4:19766616-19766635 | None:intergenic | 45.0% | |
| TCGTCTACATCCTCATCTTC+TGG | - | chr7.4:19767749-19767768 | None:intergenic | 45.0% | |
| TGGTATTGCTCCAGAAGATG+AGG | + | chr7.4:19767736-19767755 | MS.gene42247:CDS | 45.0% | |
| TTGAAGGTGATGCATCTGGT+AGG | + | chr7.4:19767340-19767359 | MS.gene42247:CDS | 45.0% | |
| ! | GCGACTCTTCTTTTCACTTC+TGG | - | chr7.4:19767376-19767395 | None:intergenic | 45.0% |
| !! | ATCTTCTGGAGCAATACCAG+AGG | - | chr7.4:19767735-19767754 | None:intergenic | 45.0% |
| !! | TCCCAAGGATATTGAGTTGG+TGG | + | chr7.4:19767781-19767800 | MS.gene42247:CDS | 45.0% |
| !! | CTAAAAAAAAAATAATAAAT+TGG | - | chr7.4:19766071-19766090 | None:intergenic | 5.0% |
| GAGCAGCAAGAAGCTCTTCT+TGG | - | chr7.4:19766000-19766019 | None:intergenic | 50.0% | |
| GAGCTCACAGCTACAAACTC+AGG | + | chr7.4:19767655-19767674 | MS.gene42247:CDS | 50.0% | |
| GAGGACGATGACAATGCTGA+AGG | + | chr7.4:19766670-19766689 | MS.gene42247:CDS | 50.0% | |
| GATGAGGATGTAGACGAGAC+TGG | + | chr7.4:19767752-19767771 | MS.gene42247:CDS | 50.0% | |
| GCATGATGAGCCTGTAGTTG+AGG | + | chr7.4:19766603-19766622 | MS.gene42247:intron | 50.0% | |
| GGAGCAATACCAGAGGATTC+TGG | - | chr7.4:19767728-19767747 | None:intergenic | 50.0% | |
| GGCAGCAACAATGTCTCCAT+TGG | - | chr7.4:19767858-19767877 | None:intergenic | 50.0% | |
| TGACGAAGACGACGATGATG+AGG | + | chr7.4:19766651-19766670 | MS.gene42247:CDS | 50.0% | |
| TGACGATGATGAGGACGATG+AGG | + | chr7.4:19766627-19766646 | MS.gene42247:CDS | 50.0% | |
| ! | GCACCCGCATTGGTCAAATT+AGG | - | chr7.4:19767701-19767720 | None:intergenic | 50.0% |
| CGAGACTGGTGTAGATCCCA+AGG | + | chr7.4:19767766-19767785 | MS.gene42247:CDS | 55.0% | |
| GGTGCGAAACCAGAATCCTC+TGG | + | chr7.4:19767716-19767735 | MS.gene42247:CDS | 55.0% | |
| TCAGGCTGCAGAGCAGTTCA+AGG | + | chr7.4:19767673-19767692 | MS.gene42247:CDS | 55.0% | |
| !! | GAGTTGGTGGTGACTCAAGC+TGG | + | chr7.4:19767794-19767813 | MS.gene42247:CDS | 55.0% |
| !! | TTCTGGTTTCGCACCCGCAT+TGG | - | chr7.4:19767711-19767730 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 19765983 | 19767898 | 19765983 | ID=MS.gene42247 |
| chr7.4 | mRNA | 19765983 | 19767898 | 19765983 | ID=MS.gene42247.t1;Parent=MS.gene42247 |
| chr7.4 | exon | 19765983 | 19766042 | 19765983 | ID=MS.gene42247.t1.exon1;Parent=MS.gene42247.t1 |
| chr7.4 | CDS | 19765983 | 19766042 | 19765983 | ID=cds.MS.gene42247.t1;Parent=MS.gene42247.t1 |
| chr7.4 | exon | 19766604 | 19766691 | 19766604 | ID=MS.gene42247.t1.exon2;Parent=MS.gene42247.t1 |
| chr7.4 | CDS | 19766604 | 19766691 | 19766604 | ID=cds.MS.gene42247.t1;Parent=MS.gene42247.t1 |
| chr7.4 | exon | 19767337 | 19767467 | 19767337 | ID=MS.gene42247.t1.exon3;Parent=MS.gene42247.t1 |
| chr7.4 | CDS | 19767337 | 19767467 | 19767337 | ID=cds.MS.gene42247.t1;Parent=MS.gene42247.t1 |
| chr7.4 | exon | 19767566 | 19767898 | 19767566 | ID=MS.gene42247.t1.exon4;Parent=MS.gene42247.t1 |
| chr7.4 | CDS | 19767566 | 19767898 | 19767566 | ID=cds.MS.gene42247.t1;Parent=MS.gene42247.t1 |
| Gene Sequence |
| Protein sequence |
