AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene040706

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040706.t1 MTR_5g022730 98.701 154 2 0 3 156 2 155 4.44e-111 312
MS.gene040706.t1 MTR_5g022710 95.455 154 7 0 3 156 2 155 4.68e-100 284
MS.gene040706.t1 MTR_7g021400 86.538 156 21 0 1 156 1 156 2.45e-92 265
MS.gene040706.t1 MTR_7g094150 85.897 156 22 0 1 156 1 156 8.84e-91 261
MS.gene040706.t1 MTR_7g094170 84.615 156 24 0 1 156 1 156 2.10e-89 257
MS.gene040706.t1 MTR_7g021380 82.692 156 27 0 1 156 1 156 2.01e-85 247
MS.gene040706.t1 MTR_4g032400 78.205 156 33 1 2 156 8 163 4.92e-85 246
MS.gene040706.t1 MTR_3g110048 75.949 158 36 1 1 156 1 158 6.04e-85 246
MS.gene040706.t1 MTR_7g094120 74.522 157 38 1 2 156 3 159 2.04e-83 242
MS.gene040706.t1 MTR_4g032450 73.248 157 41 1 1 156 19 175 2.74e-83 243
MS.gene040706.t1 MTR_7g094280 72.785 158 41 2 1 156 1 158 1.88e-79 232
MS.gene040706.t1 MTR_8g056060 73.248 157 41 1 1 156 1 157 5.95e-79 231
MS.gene040706.t1 MTR_5g085030 72.727 154 41 1 3 155 2 155 3.87e-78 229
MS.gene040706.t1 MTR_8g468480 70.323 155 45 1 3 156 2 156 9.72e-77 225
MS.gene040706.t1 MTR_7g094310 69.620 158 36 3 1 156 1 148 6.63e-72 213
MS.gene040706.t1 MTR_4g032510 68.153 157 42 3 2 156 3 153 1.32e-70 209
MS.gene040706.t1 MTR_4g032460 71.613 155 37 2 3 156 2 150 8.60e-70 207
MS.gene040706.t1 MTR_4g032500 66.026 156 46 2 2 156 3 152 3.24e-69 206
MS.gene040706.t1 MTR_4g033455 59.740 154 62 0 3 156 7 160 2.17e-64 194
MS.gene040706.t1 MTR_5g082340 65.806 155 41 2 3 156 2 145 1.58e-63 191
MS.gene040706.t1 MTR_4g017860 54.359 195 46 3 5 156 26 220 5.31e-63 193
MS.gene040706.t1 MTR_1g099870 84.314 102 14 1 57 156 2 103 9.38e-59 178
MS.gene040706.t1 MTR_4g021390 58.065 155 62 1 2 156 4 155 4.07e-58 178
MS.gene040706.t1 MTR_4g033460 59.286 140 57 0 3 142 7 146 8.85e-58 181
MS.gene040706.t1 MTR_4g033460 59.140 93 30 1 41 133 161 245 5.68e-30 109
MS.gene040706.t1 MTR_8g089730 69.106 123 21 1 34 156 1 106 1.44e-49 155
MS.gene040706.t1 MTR_7g094320 56.688 157 27 2 1 156 1 117 3.27e-49 154
MS.gene040706.t1 MTR_4g032420 61.417 127 34 3 31 156 38 150 7.69e-47 149
MS.gene040706.t1 MTR_7g006370 53.901 141 56 2 2 142 4 135 3.19e-43 140
MS.gene040706.t1 MTR_4g032470 50.685 146 28 2 12 156 32 134 4.89e-43 139
MS.gene040706.t1 MTR_7g094410 53.205 156 31 4 1 114 1 156 4.38e-41 135
MS.gene040706.t1 MTR_4g131980 63.866 119 37 3 3 119 2 116 3.53e-40 132
MS.gene040706.t1 MTR_4g127240 66.019 103 29 4 40 140 26 124 9.23e-40 130
MS.gene040706.t1 MTR_7g094360 47.093 172 38 4 1 119 1 172 1.18e-39 133
MS.gene040706.t1 MTR_8g056090 48.718 156 47 6 1 154 1 125 1.34e-36 123
MS.gene040706.t1 MTR_4g119422 48.299 147 69 2 2 146 227 368 1.00e-34 124
MS.gene040706.t1 MTR_1g112590 39.355 155 78 2 8 146 1 155 9.71e-33 114
MS.gene040706.t1 MTR_7g071200 69.565 69 20 1 89 156 4 72 5.35e-28 99.4
MS.gene040706.t1 MTR_2g066010 41.722 151 76 5 8 155 20 161 3.19e-27 100
MS.gene040706.t1 MTR_4g032520 43.750 144 39 4 29 154 1 120 2.47e-26 97.1
MS.gene040706.t1 MTR_2g065720 39.873 158 83 5 1 155 30 178 3.27e-26 98.6
MS.gene040706.t1 MTR_7g094350 56.522 92 27 1 1 92 1 79 7.45e-25 95.1
MS.gene040706.t1 MTR_7g094350 51.685 89 39 3 48 135 102 187 8.53e-20 82.0
MS.gene040706.t1 MTR_5g096950 37.107 159 79 4 1 155 1 142 6.64e-23 88.6
MS.gene040706.t1 MTR_4g032540 65.079 63 21 1 90 151 70 132 8.37e-23 87.8
MS.gene040706.t1 MTR_1g042510 34.615 156 64 4 8 146 1 135 2.28e-22 90.5
MS.gene040706.t1 MTR_2g018980 34.000 150 86 3 8 156 3 140 1.17e-21 85.5
MS.gene040706.t1 MTR_1g112570 36.691 139 63 4 8 128 1 132 6.50e-21 86.7
MS.gene040706.t1 MTR_5g078680 32.051 156 68 3 8 146 1 135 1.18e-19 82.8
MS.gene040706.t1 MTR_6g053620 36.806 144 81 5 8 146 17 155 4.78e-19 82.4
MS.gene040706.t1 MTR_6g053620 36.806 144 81 5 8 146 17 155 5.25e-19 82.4
MS.gene040706.t1 MTR_8g007195 34.286 140 80 4 10 143 13 146 2.91e-18 79.7
MS.gene040706.t1 MTR_7g077810 34.722 144 84 4 8 146 18 156 1.05e-17 78.6
MS.gene040706.t1 MTR_2g100825 32.667 150 92 4 1 146 4 148 6.23e-17 76.3
MS.gene040706.t1 MTR_8g007185 32.877 146 87 4 8 147 11 151 1.04e-16 75.5
MS.gene040706.t1 MTR_2g100830 33.793 145 80 5 10 146 13 149 1.10e-16 75.5
MS.gene040706.t1 MTR_8g007205 32.877 146 87 4 8 147 11 151 1.83e-16 74.7
MS.gene040706.t1 MTR_7g036780 33.333 141 83 6 1 135 1 136 5.22e-15 70.1
MS.gene040706.t1 MTR_4g131910 39.286 112 58 2 5 112 133 238 1.03e-14 69.3
MS.gene040706.t1 MTR_8g030670 30.345 145 91 3 10 149 20 159 2.79e-14 69.3
MS.gene040706.t1 MTR_3g061700 33.684 95 56 2 53 146 1 89 2.99e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene040706.t1 AT5G42190 77.059 170 23 1 3 156 2 171 2.93e-85 247
MS.gene040706.t1 AT1G75950 78.616 159 28 1 4 156 2 160 4.97e-84 244
MS.gene040706.t1 AT1G20140 72.393 163 38 2 1 156 1 163 5.87e-83 241
MS.gene040706.t1 AT2G25700 68.712 163 44 2 1 156 1 163 2.38e-78 229
MS.gene040706.t1 AT4G34210 69.481 154 43 2 4 156 2 152 8.33e-76 223
MS.gene040706.t1 AT4G34470 68.831 154 44 2 4 156 2 152 4.41e-75 221
MS.gene040706.t1 AT3G21860 66.452 155 46 3 4 156 2 152 2.48e-67 201
MS.gene040706.t1 AT3G60010 64.331 157 47 3 5 156 2 154 1.10e-66 200
MS.gene040706.t1 AT3G21850 63.871 155 51 3 4 156 2 153 3.22e-66 199
MS.gene040706.t1 AT2G03170 62.338 154 51 2 4 156 2 149 3.09e-63 191
MS.gene040706.t1 AT2G03190 55.422 166 61 3 4 156 2 167 6.00e-59 181
MS.gene040706.t1 AT3G60020 56.329 158 57 3 5 156 2 153 2.64e-56 174
MS.gene040706.t1 AT2G03160 48.677 189 61 3 4 156 2 190 1.49e-55 173
MS.gene040706.t1 AT3G21830 55.844 154 64 2 4 156 2 152 4.80e-55 170
MS.gene040706.t1 AT2G20160 54.902 153 63 2 4 155 2 149 2.69e-53 166
MS.gene040706.t1 AT3G25650 57.229 166 58 5 4 156 2 167 5.78e-53 166
MS.gene040706.t1 AT1G10230 56.774 155 64 2 4 155 2 156 6.60e-52 162
MS.gene040706.t1 AT3G21840 57.500 120 45 3 4 121 2 117 6.58e-37 123
MS.gene040706.t1 AT3G53060 65.116 86 23 3 29 113 1 80 3.15e-31 107
MS.gene040706.t1 AT3G61415 33.333 144 86 4 8 146 18 156 3.10e-16 74.7
MS.gene040706.t1 AT3G61415 33.333 144 86 4 8 146 18 156 3.39e-16 74.3
MS.gene040706.t1 AT2G45950 31.944 144 88 4 8 146 18 156 4.90e-16 73.9
MS.gene040706.t1 AT2G45950 31.944 144 88 4 8 146 18 156 4.90e-16 73.9
MS.gene040706.t1 AT2G45950 31.944 144 88 4 8 146 18 156 4.90e-16 73.9
MS.gene040706.t1 AT2G45950 31.944 144 88 4 8 146 18 156 5.02e-16 73.9
MS.gene040706.t1 AT2G45950 31.944 144 88 4 8 146 18 156 5.02e-16 73.9

Find 39 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGTCTTGCGAATCTCTTC+AGG 0.314015 1.2:-34314498 None:intergenic
GGTCGATGAAGCGGTTGCTT+TGG 0.364221 1.2:+34313066 MS.gene040706:CDS
GAAATCATTCTTAATGTTGA+AGG 0.372420 1.2:-34314517 None:intergenic
CAACGTTACCAGCAAGATCT+TGG 0.386921 1.2:+34313150 MS.gene040706:CDS
CGAGGATGAGCTTAAGTCTT+GGG 0.409245 1.2:+34313234 MS.gene040706:CDS
TGATCATGTCTGCCACAGTC+TGG 0.431834 1.2:-34314464 None:intergenic
CGAGTTCGTCAAGGTTGATC+AGG 0.435035 1.2:+34313261 MS.gene040706:CDS
CACCTTCGCCAAGATCTTGC+TGG 0.436666 1.2:-34313158 None:intergenic
GACTTAAGCTCATCCTCGTT+AGG 0.455978 1.2:-34313229 None:intergenic
TGATTTCTCTCCAGAGGAAG+AGG 0.475889 1.2:+34314533 MS.gene040706:CDS
AAGATCTTGCTGGTAACGTT+GGG 0.477857 1.2:-34313148 None:intergenic
TTTGAATATCAAGAACCTGC+TGG 0.483519 1.2:+34314431 MS.gene040706:CDS
CGAACTTCCTCCTCTTCCTC+TGG 0.494352 1.2:-34314543 None:intergenic
TGCTGGTAACGTTGGGAAGA+GGG 0.508109 1.2:-34313141 None:intergenic
TTGCTGGTAACGTTGGGAAG+AGG 0.523250 1.2:-34313142 None:intergenic
CAAGATCTTGCTGGTAACGT+TGG 0.530853 1.2:-34313149 None:intergenic
GGAAGAGGAGGAAGTTCGTA+GGG 0.537389 1.2:+34314548 MS.gene040706:CDS
ATAATCATTCAAATGCCCAT+TGG 0.538622 1.2:-34314575 None:intergenic
CTGATCAACCTTGACGAACT+CGG 0.543997 1.2:-34313260 None:intergenic
ACGAGGATGAGCTTAAGTCT+TGG 0.544399 1.2:+34313233 MS.gene040706:CDS
AGGAAGAGGAGGAAGTTCGT+AGG 0.548370 1.2:+34314547 MS.gene040706:CDS
GACTGTGGCAGACATGATCA+AGG 0.557841 1.2:+34314467 MS.gene040706:CDS
AGTTCGTAGGGAAAACCAAT+GGG 0.562143 1.2:+34314560 MS.gene040706:CDS
AAGTTCGTAGGGAAAACCAA+TGG 0.564773 1.2:+34314559 MS.gene040706:CDS
TTGGGATTCCGAGTTCGTCA+AGG 0.598524 1.2:+34313252 MS.gene040706:CDS
TAAGAATGATTTCTCTCCAG+AGG 0.603350 1.2:+34314527 MS.gene040706:CDS
GAAGATGATTGCGCTGACAG+TGG 0.607194 1.2:+34313115 MS.gene040706:CDS
GACCTTCGAGGTCGATGAAG+CGG 0.610768 1.2:+34313057 MS.gene040706:CDS
TTCCGACGGTGAGACCTTCG+AGG 0.613590 1.2:+34313045 MS.gene040706:CDS
TTTCTCTCCAGAGGAAGAGG+AGG 0.615178 1.2:+34314536 MS.gene040706:CDS
TCTGGCATGTAAGATCCAGC+AGG 0.615709 1.2:-34314446 None:intergenic
ATCACTCTGAAGAGTTCCGA+CGG 0.622850 1.2:+34313031 MS.gene040706:CDS
AACCGCTTCATCGACCTCGA+AGG 0.623664 1.2:-34313059 None:intergenic
ACTGTGGCAGACATGATCAA+GGG 0.624146 1.2:+34314468 MS.gene040706:CDS
TACCAGCAAGATCTTGGCGA+AGG 0.627734 1.2:+34313156 MS.gene040706:CDS
CTGTGGCAGACATGATCAAG+GGG 0.638852 1.2:+34314469 MS.gene040706:CDS
GACCTCGAAGGTCTCACCGT+CGG 0.662584 1.2:-34313047 None:intergenic
GGATCTTACATGCCAGACTG+TGG 0.675179 1.2:+34314452 MS.gene040706:CDS
TGCTGAAGACAAACCTAACG+AGG 0.677963 1.2:+34313216 MS.gene040706:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATTTGATTTTGTTTT+GGG + chr1.2:34313362-34313381 MS.gene040706:intron 10.0%
!! ATTTAGTGTTATATTGTATT+GGG + chr1.2:34313585-34313604 MS.gene040706:intron 15.0%
!! GAATAAGAATATCAATTATT+CGG - chr1.2:34314052-34314071 None:intergenic 15.0%
!! TATTTAGTGTTATATTGTAT+TGG + chr1.2:34313584-34313603 MS.gene040706:intron 15.0%
!! TTATCGTTTATTATTTGATT+TGG + chr1.2:34313338-34313357 MS.gene040706:intron 15.0%
!!! GTTTTTATTTGATTTTGTTT+TGG + chr1.2:34313361-34313380 MS.gene040706:intron 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG + chr1.2:34313519-34313538 MS.gene040706:intron 15.0%
!!! TATCGTTTATTATTTGATTT+GGG + chr1.2:34313339-34313358 MS.gene040706:intron 15.0%
!!! TTTTATTTGATTTTGTTTTG+GGG + chr1.2:34313363-34313382 MS.gene040706:intron 15.0%
!! AAAGTGGAATATATTGTATT+GGG + chr1.2:34313544-34313563 MS.gene040706:intron 20.0%
!! AATCTGAATGAATAGTTTAT+TGG + chr1.2:34313422-34313441 MS.gene040706:intron 20.0%
!!! AGCAAATTTGCATTTTTTAA+TGG - chr1.2:34314367-34314386 None:intergenic 20.0%
!!! ATGTTTATGTTATGTTTTGT+TGG + chr1.2:34314114-34314133 MS.gene040706:intron 20.0%
!!! ATTTCAATTTGTCTTTTGTT+TGG + chr1.2:34313778-34313797 MS.gene040706:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + chr1.2:34313654-34313673 MS.gene040706:intron 20.0%
!!! TATCATATTTTTTCCTTTGT+AGG + chr1.2:34314398-34314417 MS.gene040706:intron 20.0%
!!! TTTCAATTTGTCTTTTGTTT+GGG + chr1.2:34313779-34313798 MS.gene040706:intron 20.0%
! GAAAGTGGAATATATTGTAT+TGG + chr1.2:34313543-34313562 MS.gene040706:intron 25.0%
! GAAATCATTCTTAATGTTGA+AGG - chr1.2:34314520-34314539 None:intergenic 25.0%
! TGTATAAATAAAGGAGAAAG+TGG + chr1.2:34313528-34313547 MS.gene040706:intron 25.0%
! TTTGTTCTACAACATTGTTA+TGG + chr1.2:34313942-34313961 MS.gene040706:intron 25.0%
!! AGCGATTTTATGTTTTCATT+TGG + chr1.2:34313996-34314015 MS.gene040706:intron 25.0%
!! TAATAAAGGATTAGGGTTTT+TGG + chr1.2:34313701-34313720 MS.gene040706:intron 25.0%
!! TAATAATCCTATGTTTCTGA+TGG + chr1.2:34314321-34314340 MS.gene040706:intron 25.0%
!!! ATCTTGGTAAGTTTGTTTTA+GGG + chr1.2:34313301-34313320 MS.gene040706:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + chr1.2:34313653-34313672 MS.gene040706:intron 25.0%
!!! TGAAATGAGTCAGTTTTTTT+GGG + chr1.2:34313632-34313651 MS.gene040706:intron 25.0%
!!! TTGAAATGAGTCAGTTTTTT+TGG + chr1.2:34313631-34313650 MS.gene040706:intron 25.0%
!!! TTGTTTGGGTTGAATTTAAT+GGG + chr1.2:34313793-34313812 MS.gene040706:intron 25.0%
!!! TTTGTTTGGGTTGAATTTAA+TGG + chr1.2:34313792-34313811 MS.gene040706:intron 25.0%
AAATAATTAGCAGCCTACAA+AGG - chr1.2:34314414-34314433 None:intergenic 30.0%
CCAGAAAACCCTAATAATTT+AGG - chr1.2:34313390-34313409 None:intergenic 30.0%
TGATAACCAAATGATGAACA+TGG + chr1.2:34314252-34314271 MS.gene040706:intron 30.0%
! CCTAAATTATTAGGGTTTTC+TGG + chr1.2:34313387-34313406 MS.gene040706:intron 30.0%
! TTTAATGGCAATGAGTTGAA+GGG - chr1.2:34314352-34314371 None:intergenic 30.0%
! TTTGGGGTCCTAAATTATTA+GGG + chr1.2:34313379-34313398 MS.gene040706:intron 30.0%
!! AATTATTAGGGTTTTCTGGT+TGG + chr1.2:34313391-34313410 MS.gene040706:intron 30.0%
!! CATCTTGGTAAGTTTGTTTT+AGG + chr1.2:34313300-34313319 MS.gene040706:intron 30.0%
!! TTTTAATGGCAATGAGTTGA+AGG - chr1.2:34314353-34314372 None:intergenic 30.0%
!!! TTTTGGGGTCCTAAATTATT+AGG + chr1.2:34313378-34313397 MS.gene040706:intron 30.0%
AATAGCATATAGCCCAATAG+AGG - chr1.2:34313880-34313899 None:intergenic 35.0%
AGAAAATGGGTCAGTTATAC+CGG + chr1.2:34313667-34313686 MS.gene040706:intron 35.0%
AGAGAATTTGACATAGTGAG+TGG - chr1.2:34314087-34314106 None:intergenic 35.0%
ATTCGTCGTGTTTGTTTGTT+TGG + chr1.2:34314161-34314180 MS.gene040706:intron 35.0%
CAAAGTAGGTCAATTAAACC+GGG - chr1.2:34313484-34313503 None:intergenic 35.0%
CCAAAGTAGGTCAATTAAAC+CGG - chr1.2:34313485-34313504 None:intergenic 35.0%
GACAATCCATGTTCATCATT+TGG - chr1.2:34314261-34314280 None:intergenic 35.0%
GAGGGAGTAATAAAGGATTA+GGG + chr1.2:34313694-34313713 MS.gene040706:intron 35.0%
TAAGAATGATTTCTCTCCAG+AGG + chr1.2:34314527-34314546 MS.gene040706:CDS 35.0%
TCTGTGTGAAAAACCAAAGT+AGG - chr1.2:34313498-34313517 None:intergenic 35.0%
TTTGAATATCAAGAACCTGC+TGG + chr1.2:34314431-34314450 MS.gene040706:CDS 35.0%
!! TACGCTTTTTGATCTCATCT+TGG + chr1.2:34313285-34313304 MS.gene040706:CDS 35.0%
!!! AGGATTAGGGTTTTTGGTTT+TGG + chr1.2:34313707-34313726 MS.gene040706:intron 35.0%
AAAAAGATAGCCACAAGAGC+AGG - chr1.2:34313925-34313944 None:intergenic 40.0%
AAGTTCGTAGGGAAAACCAA+TGG + chr1.2:34314559-34314578 MS.gene040706:CDS 40.0%
AGTTCGTAGGGAAAACCAAT+GGG + chr1.2:34314560-34314579 MS.gene040706:CDS 40.0%
ATTGTGCATTGTGCCTCTAT+TGG + chr1.2:34313864-34313883 MS.gene040706:intron 40.0%
CCGGTTTAATTGACCTACTT+TGG + chr1.2:34313482-34313501 MS.gene040706:intron 40.0%
GAAAATGGGTCAGTTATACC+GGG + chr1.2:34313668-34313687 MS.gene040706:intron 40.0%
GGAGGGAGTAATAAAGGATT+AGG + chr1.2:34313693-34313712 MS.gene040706:intron 40.0%
GGTGTAACCATCAGAAACAT+AGG - chr1.2:34314331-34314350 None:intergenic 40.0%
TTGTGCATTGTGCCTCTATT+GGG + chr1.2:34313865-34313884 MS.gene040706:intron 40.0%
! AAGATCTTGCTGGTAACGTT+GGG - chr1.2:34313151-34313170 None:intergenic 40.0%
!!! GGATTGTCATTTTCTCACGA+CGG + chr1.2:34314273-34314292 MS.gene040706:intron 40.0%
AAGGTCTTGCGAATCTCTTC+AGG - chr1.2:34314501-34314520 None:intergenic 45.0%
AATTAATACTCCCTCCGTCC+CGG + chr1.2:34313463-34313482 MS.gene040706:intron 45.0%
ACGAGGATGAGCTTAAGTCT+TGG + chr1.2:34313233-34313252 MS.gene040706:CDS 45.0%
ACTGTGGCAGACATGATCAA+GGG + chr1.2:34314468-34314487 MS.gene040706:CDS 45.0%
CAACGTTACCAGCAAGATCT+TGG + chr1.2:34313150-34313169 MS.gene040706:CDS 45.0%
CGAGGATGAGCTTAAGTCTT+GGG + chr1.2:34313234-34313253 MS.gene040706:CDS 45.0%
CTGATCAACCTTGACGAACT+CGG - chr1.2:34313263-34313282 None:intergenic 45.0%
GACTTAAGCTCATCCTCGTT+AGG - chr1.2:34313232-34313251 None:intergenic 45.0%
GTAGGTCAATTAAACCGGGA+CGG - chr1.2:34313480-34313499 None:intergenic 45.0%
TGATTTCTCTCCAGAGGAAG+AGG + chr1.2:34314533-34314552 MS.gene040706:CDS 45.0%
TGCTGAAGACAAACCTAACG+AGG + chr1.2:34313216-34313235 MS.gene040706:CDS 45.0%
TGTTGAATTGCCTGCTCTTG+TGG + chr1.2:34313912-34313931 MS.gene040706:intron 45.0%
! ATCACTCTGAAGAGTTCCGA+CGG + chr1.2:34313031-34313050 MS.gene040706:CDS 45.0%
! CAAGATCTTGCTGGTAACGT+TGG - chr1.2:34313152-34313171 None:intergenic 45.0%
!! GTATTAATTAATAAAAAAAT+AGG - chr1.2:34313452-34313471 None:intergenic 5.0%
AGGAAGAGGAGGAAGTTCGT+AGG + chr1.2:34314547-34314566 MS.gene040706:CDS 50.0%
ATGGGTCAGTTATACCGGGA+CGG + chr1.2:34313672-34313691 MS.gene040706:intron 50.0%
CTGTGGCAGACATGATCAAG+GGG + chr1.2:34314469-34314488 MS.gene040706:CDS 50.0%
CTTTATTACTCCCTCCGTCC+CGG - chr1.2:34313689-34313708 None:intergenic 50.0%
GACTGTGGCAGACATGATCA+AGG + chr1.2:34314467-34314486 MS.gene040706:CDS 50.0%
GGAAGAGGAGGAAGTTCGTA+GGG + chr1.2:34314548-34314567 MS.gene040706:CDS 50.0%
GGATCTTACATGCCAGACTG+TGG + chr1.2:34314452-34314471 MS.gene040706:CDS 50.0%
GTCAATTAAACCGGGACGGA+GGG - chr1.2:34313476-34313495 None:intergenic 50.0%
TACCAGCAAGATCTTGGCGA+AGG + chr1.2:34313156-34313175 MS.gene040706:CDS 50.0%
TCTGGCATGTAAGATCCAGC+AGG - chr1.2:34314449-34314468 None:intergenic 50.0%
TGATCATGTCTGCCACAGTC+TGG - chr1.2:34314467-34314486 None:intergenic 50.0%
TTGGGATTCCGAGTTCGTCA+AGG + chr1.2:34313252-34313271 MS.gene040706:CDS 50.0%
TTTCTCTCCAGAGGAAGAGG+AGG + chr1.2:34314536-34314555 MS.gene040706:CDS 50.0%
! CGAGTTCGTCAAGGTTGATC+AGG + chr1.2:34313261-34313280 MS.gene040706:CDS 50.0%
! GAAGATGATTGCGCTGACAG+TGG + chr1.2:34313115-34313134 MS.gene040706:CDS 50.0%
! TGCTGGTAACGTTGGGAAGA+GGG - chr1.2:34313144-34313163 None:intergenic 50.0%
! TTGCTGGTAACGTTGGGAAG+AGG - chr1.2:34313145-34313164 None:intergenic 50.0%
AACCGCTTCATCGACCTCGA+AGG - chr1.2:34313062-34313081 None:intergenic 55.0%
CACCTTCGCCAAGATCTTGC+TGG - chr1.2:34313161-34313180 None:intergenic 55.0%
CGAACTTCCTCCTCTTCCTC+TGG - chr1.2:34314546-34314565 None:intergenic 55.0%
CGGGACGGAGGGAGTAATAA+AGG + chr1.2:34313687-34313706 MS.gene040706:intron 55.0%
GACCTTCGAGGTCGATGAAG+CGG + chr1.2:34313057-34313076 MS.gene040706:CDS 55.0%
GGTCAATTAAACCGGGACGG+AGG - chr1.2:34313477-34313496 None:intergenic 55.0%
GGTCGATGAAGCGGTTGCTT+TGG + chr1.2:34313066-34313085 MS.gene040706:CDS 55.0%
GTCAGTTATACCGGGACGGA+GGG + chr1.2:34313676-34313695 MS.gene040706:intron 55.0%
GACCTCGAAGGTCTCACCGT+CGG - chr1.2:34313050-34313069 None:intergenic 60.0%
GGTCAGTTATACCGGGACGG+AGG + chr1.2:34313675-34313694 MS.gene040706:intron 60.0%
TTCCGACGGTGAGACCTTCG+AGG + chr1.2:34313045-34313064 MS.gene040706:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 34313010 34314593 34313010 ID=MS.gene040706
chr1.2 mRNA 34313010 34314593 34313010 ID=MS.gene040706.t1;Parent=MS.gene040706
chr1.2 exon 34313010 34313306 34313010 ID=MS.gene040706.t1.exon1;Parent=MS.gene040706.t1
chr1.2 CDS 34313010 34313306 34313010 ID=cds.MS.gene040706.t1;Parent=MS.gene040706.t1
chr1.2 exon 34314420 34314593 34314420 ID=MS.gene040706.t1.exon2;Parent=MS.gene040706.t1
chr1.2 CDS 34314420 34314593 34314420 ID=cds.MS.gene040706.t1;Parent=MS.gene040706.t1
Gene Sequence

>MS.gene040706

ATGTCTTCAACAACAAGAAAGATCACTCTGAAGAGTTCCGACGGTGAGACCTTCGAGGTCGATGAAGCGGTTGCTTTGGAATCTCAGACGATCAAGCATATGATCGAAGATGATTGCGCTGACAGTGGAATCCCTCTTCCCAACGTTACCAGCAAGATCTTGGCGAAGGTGATTGAGTATTGCAAGAAGCATGTTGACGCTGCTGCTGCTGAAGACAAACCTAACGAGGATGAGCTTAAGTCTTGGGATTCCGAGTTCGTCAAGGTTGATCAGGCTACGCTTTTTGATCTCATCTTGGTAAGTTTGTTTTAGGGTTTTAATTATTGTTTTATCGTTTATTATTTGATTTGGGTTTTTATTTGATTTTGTTTTGGGGTCCTAAATTATTAGGGTTTTCTGGTTGGTGTTGAAAAATCTGAATGAATAGTTTATTGGTTTTCCTATTTTTTTATTAATTAATACTCCCTCCGTCCCGGTTTAATTGACCTACTTTGGTTTTTCACACAGATTAAGAAAAGTGTATAAATAAAGGAGAAAGTGGAATATATTGTATTGGGAATGATAAAAGTAGTATTATTTAGTGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGAGTCAGTTTTTTTGGGACACTTTTTTTTAGAAAATGGGTCAGTTATACCGGGACGGAGGGAGTAATAAAGGATTAGGGTTTTTGGTTTTGGAAATTGATTGATGTTGCTTGCTGCAAATTGATCGTTGAAGTTTTTTCAATTTCAATTTGTCTTTTGTTTGGGTTGAATTTAATGGGTTATCAGTAGTTGTTTGAATTGTGATTGTTGTTGTTGATGCTGTTACAATTGTGCATTGTGCCTCTATTGGGCTATATGCTATTGTTTTGATGTTTTGTTGAATTGCCTGCTCTTGTGGCTATCTTTTTGTTCTACAACATTGTTATGGTTGATGCTGCTATGTTATTGTGAAATTATTCAGCGATTTTATGTTTTCATTTGGATTGTTATGTGAGAAACTATATAGTCAAATCCGAATAATTGATATTCTTATTCTTTTTACATTAACCACTCACTATGTCAAATTCTCTGTTTTGTATGTTTATGTTATGTTTTGTTGGCTTATCTTTTCATTGTGTTGAAATATTCGTCGTGTTTGTTTGTTTGGATAACTTGCACAATGCAATGCTATTGTGTTTATTATTCAGTGTTTGTATCACACAATCAATCACTTACTGATAACCAAATGATGAACATGGATTGTCATTTTCTCACGACGGTCGTCTGAGTTAACTATGATTGATGTAATAATCCTATGTTTCTGATGGTTACACCCTTCAACTCATTGCCATTAAAAAATGCAAATTTGCTTTGAATGCTGATATCATATTTTTTCCTTTGTAGGCTGCTAATTATTTGAATATCAAGAACCTGCTGGATCTTACATGCCAGACTGTGGCAGACATGATCAAGGGGAAGACACCTGAAGAGATTCGCAAGACCTTCAACATTAAGAATGATTTCTCTCCAGAGGAAGAGGAGGAAGTTCGTAGGGAAAACCAATGGGCATTTGAATGA
Protein sequence

>MS.gene040706.t1

MSSTTRKITLKSSDGETFEVDEAVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVDAAAAEDKPNEDELKSWDSEFVKVDQATLFDLILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFSPEEEEEVRRENQWAFE