AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene79720

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79720.t1 MTR_8g028140 96.456 395 14 0 1 395 1 395 0.0 771
MS.gene79720.t1 MTR_8g028140 96.104 308 12 0 88 395 8 315 0.0 593
MS.gene79720.t1 MTR_1g114610 29.143 350 212 7 22 368 20 336 1.95e-31 124
MS.gene79720.t1 MTR_2g021030 28.460 383 235 10 22 368 11 390 4.88e-30 122
MS.gene79720.t1 MTR_2g021030 25.000 368 174 6 52 368 152 468 4.07e-23 101
MS.gene79720.t1 MTR_2g021030 28.102 274 189 5 97 364 296 567 1.75e-18 87.8
MS.gene79720.t1 MTR_2g021030 28.839 267 171 9 75 333 333 588 1.25e-17 85.1
MS.gene79720.t1 MTR_2g021030 28.415 366 233 8 22 369 11 365 6.58e-30 120
MS.gene79720.t1 MTR_2g021030 27.564 312 168 8 52 334 152 434 1.50e-24 105
MS.gene79720.t1 MTR_1g012520 27.778 378 244 7 7 368 53 417 1.94e-28 117
MS.gene79720.t1 MTR_1g012520 27.703 296 191 7 82 374 360 635 4.87e-17 83.6
MS.gene79720.t1 MTR_1g012520 23.118 372 216 9 66 374 193 557 6.66e-14 73.9
MS.gene79720.t1 MTR_7g112570 25.874 429 223 15 21 385 48 445 5.18e-23 101
MS.gene79720.t1 MTR_7g112570 34.459 148 71 2 97 219 442 588 3.94e-18 86.7
MS.gene79720.t1 MTR_7g112570 28.405 257 148 8 95 345 363 589 6.01e-16 80.1
MS.gene79720.t1 MTR_7g112570 24.727 275 178 6 91 363 334 581 2.37e-15 78.2
MS.gene79720.t1 MTR_7g112570 25.874 429 223 15 21 385 48 445 5.31e-23 101
MS.gene79720.t1 MTR_7g112570 34.459 148 71 2 97 219 442 588 3.62e-18 86.7
MS.gene79720.t1 MTR_7g112570 28.405 257 148 8 95 345 363 589 5.56e-16 80.1
MS.gene79720.t1 MTR_7g112570 24.727 275 178 6 91 363 334 581 2.31e-15 78.2
MS.gene79720.t1 MTR_7g112570 25.874 429 223 15 21 385 48 445 8.62e-23 100
MS.gene79720.t1 MTR_7g112570 33.533 167 82 3 97 235 442 607 1.15e-19 91.7
MS.gene79720.t1 MTR_7g112570 27.562 283 192 9 95 370 363 639 1.74e-17 84.7
MS.gene79720.t1 MTR_3g107280 27.807 374 240 9 17 376 66 423 3.96e-22 99.0
MS.gene79720.t1 MTR_3g107280 22.161 361 211 9 66 363 191 544 4.22e-12 68.2
MS.gene79720.t1 MTR_3g107280 26.644 289 173 8 123 374 347 633 2.13e-11 65.9
MS.gene79720.t1 MTR_3g107280 35.659 129 80 3 87 213 496 623 6.17e-11 64.7
MS.gene79720.t1 MTR_4g114640 26.966 356 239 8 18 364 60 403 2.66e-20 93.2
MS.gene79720.t1 MTR_1g054625 26.953 256 177 4 91 337 75 329 6.92e-19 87.4
MS.gene79720.t1 MTR_4g013255 27.451 306 165 10 93 368 227 505 3.55e-18 87.0
MS.gene79720.t1 MTR_4g013255 25.830 271 192 7 97 361 335 602 7.38e-16 79.7
MS.gene79720.t1 MTR_4g013255 25.278 360 189 8 93 373 126 484 1.15e-15 79.3
MS.gene79720.t1 MTR_4g013255 28.049 246 141 9 92 331 408 623 3.53e-15 77.8
MS.gene79720.t1 MTR_4g013255 26.216 370 194 12 41 378 39 361 3.24e-14 74.7
MS.gene79720.t1 MTR_1g054625 28.507 221 152 3 122 337 13 232 2.60e-17 81.3
MS.gene79720.t1 MTR_1g054625 28.758 153 99 4 92 242 61 205 2.61e-11 63.9
MS.gene79720.t1 MTR_1g018790 26.203 374 207 16 19 374 61 383 3.01e-16 80.9
MS.gene79720.t1 MTR_5g088250 26.103 272 165 9 86 349 301 544 1.32e-12 69.7
MS.gene79720.t1 MTR_3g088895 31.852 135 76 2 95 213 180 314 1.47e-12 68.9
MS.gene79720.t1 MTR_3g088895 23.333 300 160 7 90 366 96 348 2.04e-12 68.6
MS.gene79720.t1 MTR_3g088895 25.806 248 135 4 123 368 77 277 1.73e-11 65.5
MS.gene79720.t1 MTR_1g029500 31.159 138 82 2 95 219 167 304 1.56e-12 68.6
MS.gene79720.t1 MTR_8g076010 22.963 405 249 13 20 385 13 393 8.22e-12 67.0
MS.gene79720.t1 MTR_1g015450 23.799 437 227 18 9 364 173 584 1.19e-11 67.0
MS.gene79720.t1 MTR_4g114650 24.930 357 216 12 18 364 55 369 3.46e-11 65.5
MS.gene79720.t1 MTR_4g114650 24.363 353 223 10 18 364 59 373 3.60e-11 65.5
MS.gene79720.t1 MTR_4g114650 24.930 357 216 12 18 364 110 424 4.85e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene79720.t1 AT3G07550 59.278 388 152 3 8 390 1 387 1.30e-150 432
MS.gene79720.t1 AT3G07550 59.278 388 152 3 8 390 1 387 1.30e-150 432
MS.gene79720.t1 AT3G07550 54.897 388 142 4 8 390 1 360 4.10e-131 381
MS.gene79720.t1 AT5G23340 28.495 372 235 7 22 366 10 377 6.71e-34 130
MS.gene79720.t1 AT4G15475 28.297 417 218 12 22 368 11 416 4.71e-32 128
MS.gene79720.t1 AT4G15475 29.091 275 185 5 97 364 296 567 1.20e-23 103
MS.gene79720.t1 AT4G15475 27.338 278 171 6 95 368 218 468 4.76e-18 86.7
MS.gene79720.t1 AT4G15475 25.911 247 171 7 95 333 346 588 4.22e-16 80.5
MS.gene79720.t1 AT5G25350 26.446 363 242 8 17 371 53 398 1.67e-22 100
MS.gene79720.t1 AT5G25350 24.286 280 173 7 123 364 327 605 2.81e-11 65.5
MS.gene79720.t1 AT2G25490 26.230 366 234 7 17 368 62 405 1.15e-19 91.3
MS.gene79720.t1 AT2G25490 28.980 245 140 10 108 345 374 591 9.26e-13 70.1
MS.gene79720.t1 AT5G27920 27.976 336 198 10 66 369 99 422 7.83e-19 89.0
MS.gene79720.t1 AT5G27920 25.779 353 180 7 78 373 201 528 3.18e-17 84.0
MS.gene79720.t1 AT5G27920 26.882 279 190 9 100 370 330 602 1.98e-16 81.6
MS.gene79720.t1 AT5G27920 29.870 231 134 9 97 325 405 609 1.13e-13 73.2
MS.gene79720.t1 AT3G58530 26.337 243 155 4 122 363 112 331 1.60e-17 83.6
MS.gene79720.t1 AT3G58530 28.846 156 105 3 87 242 155 304 3.34e-12 67.8
MS.gene79720.t1 AT1G21410 23.885 314 165 9 90 376 85 351 5.89e-16 79.0
MS.gene79720.t1 AT1G21410 26.596 188 133 3 77 262 125 309 1.99e-12 68.6
MS.gene79720.t1 AT1G21410 23.885 314 165 9 90 376 85 351 5.89e-16 79.0
MS.gene79720.t1 AT1G21410 26.596 188 133 3 77 262 125 309 1.99e-12 68.6
MS.gene79720.t1 AT5G01720 24.739 287 181 8 90 345 273 555 1.63e-15 79.0
MS.gene79720.t1 AT5G01720 24.198 343 200 7 101 385 232 572 2.27e-15 78.6
MS.gene79720.t1 AT5G01720 24.727 275 159 4 122 371 151 402 2.68e-13 72.0
MS.gene79720.t1 AT1G77000 35.897 117 71 2 81 196 158 271 2.37e-13 71.2
MS.gene79720.t1 AT1G77000 23.390 295 153 7 107 375 103 350 6.31e-13 70.1
MS.gene79720.t1 AT1G77000 28.090 178 123 3 87 262 135 309 8.53e-13 69.7
MS.gene79720.t1 AT1G77000 35.897 117 71 2 81 196 158 271 2.37e-13 71.2
MS.gene79720.t1 AT1G77000 23.390 295 153 7 107 375 103 350 6.31e-13 70.1
MS.gene79720.t1 AT1G77000 28.090 178 123 3 87 262 135 309 8.53e-13 69.7
MS.gene79720.t1 AT1G77000 34.821 112 72 1 107 217 103 214 1.46e-12 67.8
MS.gene79720.t1 AT1G77000 34.821 112 72 1 107 217 103 214 1.46e-12 67.8
MS.gene79720.t1 AT5G67250 24.198 343 189 11 22 359 46 322 1.84e-12 69.3

Find 91 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGTCCGACGGTTGAAATTT+TGG 0.164874 8.4:-67830643 None:intergenic
CATGCAGTTTCTTCAAATTC+TGG 0.189559 8.4:-67831453 None:intergenic
CAATTCCGATCACCCCTTCT+AGG 0.262956 8.4:-67831189 None:intergenic
TGCCTCAATCTTACTGATAA+TGG 0.307545 8.4:+67831484 MS.gene79720:CDS
TGCTTAAGTTGGTCACCTTC+AGG 0.327213 8.4:+67831247 MS.gene79720:CDS
GGGCTATCCCTAGTTGCTTC+TGG 0.330852 8.4:+67830896 MS.gene79720:CDS
TGTCATGAGGTGAGTATATC+TGG 0.346053 8.4:+67831406 MS.gene79720:CDS
TTTACACCGTCCATATTCAT+AGG 0.354668 8.4:+67830729 MS.gene79720:CDS
GGAGATCCCTTGCGTGGAAT+AGG 0.355838 8.4:+67831268 MS.gene79720:CDS
TGCACGGAGCTCGATGATTC+AGG 0.355920 8.4:+67830797 MS.gene79720:CDS
CGTACTGATCGTGAATCATT+TGG 0.356173 8.4:+67830593 MS.gene79720:CDS
GCCTTAGCAACCTATGAATA+TGG 0.358247 8.4:-67830739 None:intergenic
GATGGAGGTAGCACCAAGTT+TGG 0.367641 8.4:-67830519 None:intergenic
TCTTACTGATAATGGCTTGC+GGG 0.391157 8.4:+67831492 MS.gene79720:CDS
ACAACCATTCAAGTACAAAA+TGG 0.391558 8.4:-67831542 None:intergenic
CCCTTCCTCTTTGTCTGCCA+AGG 0.401973 8.4:+67830697 MS.gene79720:CDS
ATCTACACATTCGAAAGTTT+AGG 0.413893 8.4:-67831312 None:intergenic
TGTCTTAACATTACTGATGA+AGG 0.429447 8.4:+67830953 MS.gene79720:CDS
TCTTGTAATCTTAGCCTAGA+AGG 0.430444 8.4:+67831175 MS.gene79720:CDS
CAGAGGCGATGTTTGCATAA+AGG 0.431376 8.4:+67831606 MS.gene79720:CDS
ATCGGAATTGTTAGCGGTGA+CGG 0.437217 8.4:+67831202 MS.gene79720:CDS
TCAGCCAATATCATCTGAAT+GGG 0.438144 8.4:-67831660 None:intergenic
ATGGAAGATCTTTCCAAACT+TGG 0.457693 8.4:+67830506 MS.gene79720:CDS
TCTTCAGATGAGTCTTGAAA+AGG 0.458770 8.4:+67830478 None:intergenic
TAGATGTATCTTGCTTAAGT+TGG 0.458772 8.4:+67831236 MS.gene79720:CDS
TTGGCTTGACTTGCCGCCGA+TGG 0.461152 8.4:+67830612 MS.gene79720:CDS
ATCAGCCAATATCATCTGAA+TGG 0.461278 8.4:-67831661 None:intergenic
TATCATCTGAATGGGGAGTA+AGG 0.469526 8.4:-67831652 None:intergenic
TTCAAGTAGTGTACATCCCT+TGG 0.473496 8.4:-67831365 None:intergenic
ATAAGCGGCGTTGGCTTCAA+AGG 0.475188 8.4:+67831118 MS.gene79720:CDS
TTGAATAACTCTAATGCTAA+AGG 0.480544 8.4:-67831577 None:intergenic
TGAACCGTAGCTTAGCAAAC+GGG 0.481477 8.4:-67830825 None:intergenic
TTGAACCGTAGCTTAGCAAA+CGG 0.494178 8.4:-67830826 None:intergenic
GATGTACACTACTTGAAGAA+TGG 0.498471 8.4:+67831371 MS.gene79720:CDS
TGTTTGAAAGTCACTAACTA+CGG 0.506597 8.4:+67830875 MS.gene79720:CDS
ATAACAGTAAGGCAGTCATC+TGG 0.510086 8.4:-67830551 None:intergenic
TTAGAGTCTTTATCTCTATG+TGG 0.511065 8.4:+67830773 MS.gene79720:CDS
CCTTCCTCTTTGTCTGCCAA+GGG 0.511975 8.4:+67830698 MS.gene79720:CDS
GCTCACAAATATCTGACAAA+GGG 0.515426 8.4:+67831032 MS.gene79720:CDS
TTCTATTATTGCAATAGCCA+AGG 0.528487 8.4:+67831348 MS.gene79720:CDS
TGTGAGAGTATAAGCGGCGT+TGG 0.539015 8.4:+67831109 MS.gene79720:CDS
ATATTTGTGAGCAGTATGAC+AGG 0.539346 8.4:-67831021 None:intergenic
GTTTGAAAGTCACTAACTAC+GGG 0.539400 8.4:+67830876 MS.gene79720:CDS
CTTGTAATCTTAGCCTAGAA+GGG 0.540410 8.4:+67831176 MS.gene79720:CDS
AGGGACAACCAGAAGCAACT+AGG 0.542948 8.4:-67830904 None:intergenic
TCCATATTCATAGGTTGCTA+AGG 0.554256 8.4:+67830738 MS.gene79720:CDS
TCAGCGGTGTCGCCAGCTTG+AGG 0.557701 8.4:+67831069 MS.gene79720:CDS
TGACAACAATTAGTCTCTAT+CGG 0.563574 8.4:+67830930 MS.gene79720:CDS
GTCATCTGGTAAGTGCATGA+TGG 0.563773 8.4:-67830537 None:intergenic
ATCTTACTGATAATGGCTTG+CGG 0.564562 8.4:+67831491 MS.gene79720:CDS
GGCTTGCGGGCGTTACGAGA+CGG 0.565563 8.4:+67831505 MS.gene79720:CDS
CTTAGCCTAGAAGGGGTGAT+CGG 0.566974 8.4:+67831184 MS.gene79720:CDS
ATATCTGGATGGCAAGCAGT+GGG 0.567563 8.4:+67831421 MS.gene79720:CDS
TAAGCGGCGTTGGCTTCAAA+GGG 0.567966 8.4:+67831119 MS.gene79720:CDS
GGGACAACCAGAAGCAACTA+GGG 0.569174 8.4:-67830903 None:intergenic
CCCTTGGCAGACAAAGAGGA+AGG 0.573268 8.4:-67830698 None:intergenic
TCTATTATTGCAATAGCCAA+GGG 0.578035 8.4:+67831349 MS.gene79720:CDS
GAGTCTTGAAAAGGTTGACA+TGG 0.579264 8.4:+67830487 MS.gene79720:CDS
TGCTCACAAATATCTGACAA+AGG 0.582059 8.4:+67831031 MS.gene79720:CDS
AGACTAATTGTTGTCAATGA+GGG 0.583295 8.4:-67830923 None:intergenic
AGCCATTATCAGTAAGATTG+AGG 0.584084 8.4:-67831486 None:intergenic
AAGACCCTTGGCAGACAAAG+AGG 0.587642 8.4:-67830702 None:intergenic
GGAAAATCCTATTCCACGCA+AGG 0.589659 8.4:-67831275 None:intergenic
GAGACTAATTGTTGTCAATG+AGG 0.594035 8.4:-67830924 None:intergenic
CTAACCCGTTTGCTAAGCTA+CGG 0.594245 8.4:+67830821 MS.gene79720:CDS
TTTATCTCTATGTGGTTGCA+CGG 0.599367 8.4:+67830781 MS.gene79720:CDS
GGTGTAAACATCAAGACCCT+TGG 0.601872 8.4:-67830714 None:intergenic
CCACGCAAGGGATCTCCTGA+AGG 0.602534 8.4:-67831262 None:intergenic
ATACGTTAATAGCCTCAAGC+TGG 0.613830 8.4:-67831081 None:intergenic
TATATCTGGATGGCAAGCAG+TGG 0.618448 8.4:+67831420 MS.gene79720:CDS
ATATCCAAAATTTCAACCGT+CGG 0.624409 8.4:+67830639 MS.gene79720:CDS
TTTGGATATGGAGCCATCGG+CGG 0.628152 8.4:-67830625 None:intergenic
GGGGTGATCGGAATTGTTAG+CGG 0.629228 8.4:+67831196 MS.gene79720:CDS
TTTCAAAGATAAGCAAGCAG+TGG 0.631769 8.4:-67830990 None:intergenic
TGTTTGCATAAAGGAAGAAG+AGG 0.634712 8.4:+67831615 MS.gene79720:CDS
CCTTCAGGAGATCCCTTGCG+TGG 0.636398 8.4:+67831262 MS.gene79720:CDS
ATCTGGTAAGTGCATGATGG+AGG 0.637213 8.4:-67830534 None:intergenic
TTGTAATCTTAGCCTAGAAG+GGG 0.639911 8.4:+67831177 MS.gene79720:CDS
TCGCATTGTGAGAGTATAAG+CGG 0.642424 8.4:+67831103 MS.gene79720:CDS
TAGGCTAAGATTACAAGACT+CGG 0.642926 8.4:-67831170 None:intergenic
TAGCAACCTATGAATATGGA+CGG 0.643940 8.4:-67830735 None:intergenic
AAAATCTCTCGTACACGTCG+AGG 0.649782 8.4:+67831147 MS.gene79720:CDS
GAATTTAGCATTATGTCATG+AGG 0.655104 8.4:+67831393 MS.gene79720:CDS
GAAAATCCTATTCCACGCAA+GGG 0.659659 8.4:-67831274 None:intergenic
CCTTGGCAGACAAAGAGGAA+GGG 0.661145 8.4:-67830697 None:intergenic
CAGCCAATATCATCTGAATG+GGG 0.689748 8.4:-67831659 None:intergenic
ATGAGGTGAGTATATCTGGA+TGG 0.692395 8.4:+67831410 MS.gene79720:CDS
ACTCAAATTGCATAGTCCGA+CGG 0.693492 8.4:-67830655 None:intergenic
TATCTGGATGGCAAGCAGTG+GGG 0.732481 8.4:+67831422 MS.gene79720:CDS
GAGTTATTCAAGTCTCACAG+AGG 0.740335 8.4:+67831589 MS.gene79720:CDS
GGTTGAAAGCTCTTACTCAG+CGG 0.742567 8.4:+67831053 MS.gene79720:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTACAAAAACTTAATC+TGG + chr8.4:67830847-67830866 MS.gene79720:CDS 15.0%
! AACCATGAAAAATAACAGTA+AGG - chr8.4:67830565-67830584 None:intergenic 25.0%
! TTGAATAACTCTAATGCTAA+AGG - chr8.4:67831580-67831599 None:intergenic 25.0%
ACAACCATTCAAGTACAAAA+TGG - chr8.4:67831545-67831564 None:intergenic 30.0%
AGACTAATTGTTGTCAATGA+GGG - chr8.4:67830926-67830945 None:intergenic 30.0%
ATATCCAAAATTTCAACCGT+CGG + chr8.4:67830639-67830658 MS.gene79720:CDS 30.0%
ATCTACACATTCGAAAGTTT+AGG - chr8.4:67831315-67831334 None:intergenic 30.0%
GAATTTAGCATTATGTCATG+AGG + chr8.4:67831393-67831412 MS.gene79720:CDS 30.0%
TAGATGTATCTTGCTTAAGT+TGG + chr8.4:67831236-67831255 MS.gene79720:CDS 30.0%
TCTATTATTGCAATAGCCAA+GGG + chr8.4:67831349-67831368 MS.gene79720:CDS 30.0%
TGTCTTAACATTACTGATGA+AGG + chr8.4:67830953-67830972 MS.gene79720:CDS 30.0%
TGTTTGAAAGTCACTAACTA+CGG + chr8.4:67830875-67830894 MS.gene79720:CDS 30.0%
TTAGAGTCTTTATCTCTATG+TGG + chr8.4:67830773-67830792 MS.gene79720:CDS 30.0%
TTCTATTATTGCAATAGCCA+AGG + chr8.4:67831348-67831367 MS.gene79720:CDS 30.0%
! TGACAACAATTAGTCTCTAT+CGG + chr8.4:67830930-67830949 MS.gene79720:CDS 30.0%
!! TTCGAAAGTTTAGGATTTTG+AGG - chr8.4:67831306-67831325 None:intergenic 30.0%
!!! TGCCTTACTGTTATTTTTCA+TGG + chr8.4:67830560-67830579 MS.gene79720:CDS 30.0%
AGCCATTATCAGTAAGATTG+AGG - chr8.4:67831489-67831508 None:intergenic 35.0%
ATATTTGTGAGCAGTATGAC+AGG - chr8.4:67831024-67831043 None:intergenic 35.0%
ATGGAAGATCTTTCCAAACT+TGG + chr8.4:67830506-67830525 MS.gene79720:CDS 35.0%
CATGCAGTTTCTTCAAATTC+TGG - chr8.4:67831456-67831475 None:intergenic 35.0%
CTTGTAATCTTAGCCTAGAA+GGG + chr8.4:67831176-67831195 MS.gene79720:CDS 35.0%
GAGACTAATTGTTGTCAATG+AGG - chr8.4:67830927-67830946 None:intergenic 35.0%
GATGTACACTACTTGAAGAA+TGG + chr8.4:67831371-67831390 MS.gene79720:CDS 35.0%
GCTCACAAATATCTGACAAA+GGG + chr8.4:67831032-67831051 MS.gene79720:CDS 35.0%
GTTTGAAAGTCACTAACTAC+GGG + chr8.4:67830876-67830895 MS.gene79720:CDS 35.0%
TAGCAACCTATGAATATGGA+CGG - chr8.4:67830738-67830757 None:intergenic 35.0%
TAGGCTAAGATTACAAGACT+CGG - chr8.4:67831173-67831192 None:intergenic 35.0%
TCCATATTCATAGGTTGCTA+AGG + chr8.4:67830738-67830757 MS.gene79720:CDS 35.0%
TCTTGTAATCTTAGCCTAGA+AGG + chr8.4:67831175-67831194 MS.gene79720:CDS 35.0%
TGCCTCAATCTTACTGATAA+TGG + chr8.4:67831484-67831503 MS.gene79720:CDS 35.0%
TGCTCACAAATATCTGACAA+AGG + chr8.4:67831031-67831050 MS.gene79720:CDS 35.0%
TGTTTGCATAAAGGAAGAAG+AGG + chr8.4:67831615-67831634 MS.gene79720:CDS 35.0%
TTGTAATCTTAGCCTAGAAG+GGG + chr8.4:67831177-67831196 MS.gene79720:CDS 35.0%
TTTACACCGTCCATATTCAT+AGG + chr8.4:67830729-67830748 MS.gene79720:CDS 35.0%
TTTATCTCTATGTGGTTGCA+CGG + chr8.4:67830781-67830800 MS.gene79720:CDS 35.0%
TTTCAAAGATAAGCAAGCAG+TGG - chr8.4:67830993-67831012 None:intergenic 35.0%
! AATTTTGGATATGGAGCCAT+CGG - chr8.4:67830631-67830650 None:intergenic 35.0%
! CTCTCCATTTTGTACTTGAA+TGG + chr8.4:67831538-67831557 MS.gene79720:CDS 35.0%
! GACGGTTGAAATTTTGGATA+TGG - chr8.4:67830640-67830659 None:intergenic 35.0%
!! ATCTTACTGATAATGGCTTG+CGG + chr8.4:67831491-67831510 MS.gene79720:CDS 35.0%
ACTCAAATTGCATAGTCCGA+CGG - chr8.4:67830658-67830677 None:intergenic 40.0%
ATAACAGTAAGGCAGTCATC+TGG - chr8.4:67830554-67830573 None:intergenic 40.0%
ATACGTTAATAGCCTCAAGC+TGG - chr8.4:67831084-67831103 None:intergenic 40.0%
ATGAGGTGAGTATATCTGGA+TGG + chr8.4:67831410-67831429 MS.gene79720:CDS 40.0%
GAAAATCCTATTCCACGCAA+GGG - chr8.4:67831277-67831296 None:intergenic 40.0%
GAGTCTTGAAAAGGTTGACA+TGG + chr8.4:67830487-67830506 MS.gene79720:CDS 40.0%
GAGTTATTCAAGTCTCACAG+AGG + chr8.4:67831589-67831608 MS.gene79720:CDS 40.0%
GCCTTAGCAACCTATGAATA+TGG - chr8.4:67830742-67830761 None:intergenic 40.0%
TGTCATGAGGTGAGTATATC+TGG + chr8.4:67831406-67831425 MS.gene79720:CDS 40.0%
TTCAAGTAGTGTACATCCCT+TGG - chr8.4:67831368-67831387 None:intergenic 40.0%
TTGAACCGTAGCTTAGCAAA+CGG - chr8.4:67830829-67830848 None:intergenic 40.0%
! CGTACTGATCGTGAATCATT+TGG + chr8.4:67830593-67830612 MS.gene79720:CDS 40.0%
! TAGTCCGACGGTTGAAATTT+TGG - chr8.4:67830646-67830665 None:intergenic 40.0%
! TCGCATTGTGAGAGTATAAG+CGG + chr8.4:67831103-67831122 MS.gene79720:CDS 40.0%
!! TCTTACTGATAATGGCTTGC+GGG + chr8.4:67831492-67831511 MS.gene79720:CDS 40.0%
!!! GTTTAGGATTTTGAGGCTTG+AGG - chr8.4:67831299-67831318 None:intergenic 40.0%
AAAATCTCTCGTACACGTCG+AGG + chr8.4:67831147-67831166 MS.gene79720:CDS 45.0%
ATATCTGGATGGCAAGCAGT+GGG + chr8.4:67831421-67831440 MS.gene79720:CDS 45.0%
ATCGGAATTGTTAGCGGTGA+CGG + chr8.4:67831202-67831221 MS.gene79720:CDS 45.0%
ATCTGGTAAGTGCATGATGG+AGG - chr8.4:67830537-67830556 None:intergenic 45.0%
CAGAGGCGATGTTTGCATAA+AGG + chr8.4:67831606-67831625 MS.gene79720:CDS 45.0%
GGAAAATCCTATTCCACGCA+AGG - chr8.4:67831278-67831297 None:intergenic 45.0%
GGTGTAAACATCAAGACCCT+TGG - chr8.4:67830717-67830736 None:intergenic 45.0%
GGTTGAAAGCTCTTACTCAG+CGG + chr8.4:67831053-67831072 MS.gene79720:CDS 45.0%
GTCATCTGGTAAGTGCATGA+TGG - chr8.4:67830540-67830559 None:intergenic 45.0%
TATATCTGGATGGCAAGCAG+TGG + chr8.4:67831420-67831439 MS.gene79720:CDS 45.0%
TGAACCGTAGCTTAGCAAAC+GGG - chr8.4:67830828-67830847 None:intergenic 45.0%
! CTAACCCGTTTGCTAAGCTA+CGG + chr8.4:67830821-67830840 MS.gene79720:CDS 45.0%
!! TGCTTAAGTTGGTCACCTTC+AGG + chr8.4:67831247-67831266 MS.gene79720:CDS 45.0%
AAGACCCTTGGCAGACAAAG+AGG - chr8.4:67830705-67830724 None:intergenic 50.0%
AGGGACAACCAGAAGCAACT+AGG - chr8.4:67830907-67830926 None:intergenic 50.0%
CAATTCCGATCACCCCTTCT+AGG - chr8.4:67831192-67831211 None:intergenic 50.0%
CCTTCCTCTTTGTCTGCCAA+GGG + chr8.4:67830698-67830717 MS.gene79720:CDS 50.0%
CCTTGGCAGACAAAGAGGAA+GGG - chr8.4:67830700-67830719 None:intergenic 50.0%
CTTAGCCTAGAAGGGGTGAT+CGG + chr8.4:67831184-67831203 MS.gene79720:CDS 50.0%
GATGGAGGTAGCACCAAGTT+TGG - chr8.4:67830522-67830541 None:intergenic 50.0%
GGGACAACCAGAAGCAACTA+GGG - chr8.4:67830906-67830925 None:intergenic 50.0%
GGGGTGATCGGAATTGTTAG+CGG + chr8.4:67831196-67831215 MS.gene79720:CDS 50.0%
TATCTGGATGGCAAGCAGTG+GGG + chr8.4:67831422-67831441 MS.gene79720:CDS 50.0%
TTTGGATATGGAGCCATCGG+CGG - chr8.4:67830628-67830647 None:intergenic 50.0%
! TGTGAGAGTATAAGCGGCGT+TGG + chr8.4:67831109-67831128 MS.gene79720:CDS 50.0%
!! ATAAGCGGCGTTGGCTTCAA+AGG + chr8.4:67831118-67831137 MS.gene79720:CDS 50.0%
!! TAAGCGGCGTTGGCTTCAAA+GGG + chr8.4:67831119-67831138 MS.gene79720:CDS 50.0%
CCCTTCCTCTTTGTCTGCCA+AGG + chr8.4:67830697-67830716 MS.gene79720:CDS 55.0%
CCCTTGGCAGACAAAGAGGA+AGG - chr8.4:67830701-67830720 None:intergenic 55.0%
GGAGATCCCTTGCGTGGAAT+AGG + chr8.4:67831268-67831287 MS.gene79720:CDS 55.0%
GGGCTATCCCTAGTTGCTTC+TGG + chr8.4:67830896-67830915 MS.gene79720:CDS 55.0%
TGCACGGAGCTCGATGATTC+AGG + chr8.4:67830797-67830816 MS.gene79720:CDS 55.0%
CCACGCAAGGGATCTCCTGA+AGG - chr8.4:67831265-67831284 None:intergenic 60.0%
CCTTCAGGAGATCCCTTGCG+TGG + chr8.4:67831262-67831281 MS.gene79720:CDS 60.0%
!! TTGGCTTGACTTGCCGCCGA+TGG + chr8.4:67830612-67830631 MS.gene79720:CDS 60.0%
GGCTTGCGGGCGTTACGAGA+CGG + chr8.4:67831505-67831524 MS.gene79720:CDS 65.0%
!! TCAGCGGTGTCGCCAGCTTG+AGG + chr8.4:67831069-67831088 MS.gene79720:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 67830485 67831672 67830485 ID=MS.gene79720
chr8.4 mRNA 67830485 67831672 67830485 ID=MS.gene79720.t1;Parent=MS.gene79720
chr8.4 exon 67830485 67831672 67830485 ID=MS.gene79720.t1.exon1;Parent=MS.gene79720.t1
chr8.4 CDS 67830485 67831672 67830485 ID=cds.MS.gene79720.t1;Parent=MS.gene79720.t1
Gene Sequence

>MS.gene79720

ATGAGTCTTGAAAAGGTTGACATGGAAGATCTTTCCAAACTTGGTGCTACCTCCATCATGCACTTACCAGATGACTGCCTTACTGTTATTTTTCATGGTTTAGATTGTCGTACTGATCGTGAATCATTTGGCTTGACTTGCCGCCGATGGCTCCATATCCAAAATTTCAACCGTCGGACTATGCAATTTGAGTGTTCATTTAGTATATTAAACCCTTCCTCTTTGTCTGCCAAGGGTCTTGATGTTTACACCGTCCATATTCATAGGTTGCTAAGGCGCTTTCAACATTTAGAGTCTTTATCTCTATGTGGTTGCACGGAGCTCGATGATTCAGGACTAACCCGTTTGCTAAGCTACGGTTCAAATTTACAAAAACTTAATCTGGATTGTTGTTTGAAAGTCACTAACTACGGGCTATCCCTAGTTGCTTCTGGTTGTCCCTCATTGACAACAATTAGTCTCTATCGGTGTCTTAACATTACTGATGAAGGATTAGAGACTTTAACCACTGCTTGCTTATCTTTGAAATGCATAAACCTGTCATACTGCTCACAAATATCTGACAAAGGGTTGAAAGCTCTTACTCAGCGGTGTCGCCAGCTTGAGGCTATTAACGTATCGCATTGTGAGAGTATAAGCGGCGTTGGCTTCAAAGGGTGTTCAAAATCTCTCGTACACGTCGAGGCCGAGTCTTGTAATCTTAGCCTAGAAGGGGTGATCGGAATTGTTAGCGGTGACGGAATAGAGTATCTAGATGTATCTTGCTTAAGTTGGTCACCTTCAGGAGATCCCTTGCGTGGAATAGGATTTTCCTCAAGCCTCAAAATCCTAAACTTTCGAATGTGTAGATCAGTTTCTGATGCTTCTATTATTGCAATAGCCAAGGGATGTACACTACTTGAAGAATGGAATTTAGCATTATGTCATGAGGTGAGTATATCTGGATGGCAAGCAGTGGGGTTATATTGCCAGAATTTGAAGAAACTGCATGTGAATCGATGCCTCAATCTTACTGATAATGGCTTGCGGGCGTTACGAGACGGTTGCAGAAGTCTCTCCATTTTGTACTTGAATGGTTGTGCTCGAGTAACGCCTTTAGCATTAGAGTTATTCAAGTCTCACAGAGGCGATGTTTGCATAAAGGAAGAAGAGGTAATGTGCATAAAACCTTACTCCCCATTCAGATGA
Protein sequence

>MS.gene79720.t1

MSLEKVDMEDLSKLGATSIMHLPDDCLTVIFHGLDCRTDRESFGLTCRRWLHIQNFNRRTMQFECSFSILNPSSLSAKGLDVYTVHIHRLLRRFQHLESLSLCGCTELDDSGLTRLLSYGSNLQKLNLDCCLKVTNYGLSLVASGCPSLTTISLYRCLNITDEGLETLTTACLSLKCINLSYCSQISDKGLKALTQRCRQLEAINVSHCESISGVGFKGCSKSLVHVEAESCNLSLEGVIGIVSGDGIEYLDVSCLSWSPSGDPLRGIGFSSSLKILNFRMCRSVSDASIIAIAKGCTLLEEWNLALCHEVSISGWQAVGLYCQNLKKLHVNRCLNLTDNGLRALRDGCRSLSILYLNGCARVTPLALELFKSHRGDVCIKEEEVMCIKPYSPFR