AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene98172

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98172.t1 MTR_8g028140 98.481 395 6 0 1 395 1 395 0.0 781
MS.gene98172.t1 MTR_8g028140 98.052 308 6 0 88 395 8 315 0.0 603
MS.gene98172.t1 MTR_2g021030 28.721 383 234 10 22 368 11 390 8.77e-31 124
MS.gene98172.t1 MTR_2g021030 26.902 368 192 9 52 368 152 493 1.07e-23 103
MS.gene98172.t1 MTR_2g021030 28.839 267 171 9 75 333 333 588 1.08e-18 88.6
MS.gene98172.t1 MTR_2g021030 27.941 272 192 3 97 364 296 567 1.04e-17 85.5
MS.gene98172.t1 MTR_2g021030 26.515 264 186 5 95 352 320 581 1.99e-16 81.6
MS.gene98172.t1 MTR_1g114610 28.571 350 214 7 22 368 20 336 9.43e-30 119
MS.gene98172.t1 MTR_2g021030 28.804 368 229 10 22 369 11 365 2.27e-29 119
MS.gene98172.t1 MTR_2g021030 27.564 312 168 8 52 334 152 434 1.21e-24 105
MS.gene98172.t1 MTR_1g012520 27.778 378 244 7 7 368 53 417 3.92e-28 116
MS.gene98172.t1 MTR_1g012520 28.378 296 189 7 82 374 360 635 4.14e-17 83.6
MS.gene98172.t1 MTR_1g012520 22.849 372 217 9 66 374 193 557 9.79e-14 73.2
MS.gene98172.t1 MTR_3g107280 27.540 374 241 9 17 376 66 423 5.03e-22 98.6
MS.gene98172.t1 MTR_3g107280 22.131 366 215 9 66 368 191 549 1.40e-12 69.7
MS.gene98172.t1 MTR_3g107280 26.990 289 172 8 123 374 347 633 2.66e-12 68.9
MS.gene98172.t1 MTR_7g112570 25.234 428 227 14 21 385 48 445 1.01e-21 97.4
MS.gene98172.t1 MTR_7g112570 34.459 148 71 2 97 219 442 588 3.00e-18 87.0
MS.gene98172.t1 MTR_7g112570 28.063 253 154 6 95 345 363 589 4.38e-16 80.5
MS.gene98172.t1 MTR_7g112570 24.542 273 181 6 91 363 334 581 1.43e-14 75.9
MS.gene98172.t1 MTR_7g112570 25.234 428 227 14 21 385 48 445 1.14e-21 97.4
MS.gene98172.t1 MTR_7g112570 34.459 148 71 2 97 219 442 588 3.30e-18 87.0
MS.gene98172.t1 MTR_7g112570 28.063 253 154 6 95 345 363 589 5.17e-16 80.1
MS.gene98172.t1 MTR_7g112570 24.542 273 181 6 91 363 334 581 1.53e-14 75.9
MS.gene98172.t1 MTR_7g112570 25.234 428 227 14 21 385 48 445 1.27e-21 97.4
MS.gene98172.t1 MTR_7g112570 32.934 167 83 3 97 235 442 607 4.72e-19 89.7
MS.gene98172.t1 MTR_7g112570 27.915 283 191 9 95 370 363 639 3.85e-18 86.7
MS.gene98172.t1 MTR_4g114640 26.966 356 239 8 18 364 60 403 3.51e-20 92.8
MS.gene98172.t1 MTR_4g013255 26.557 305 169 9 93 368 227 505 1.15e-18 88.6
MS.gene98172.t1 MTR_4g013255 25.830 271 192 7 97 361 335 602 4.92e-16 80.5
MS.gene98172.t1 MTR_4g013255 28.926 242 144 9 92 331 408 623 2.27e-15 78.2
MS.gene98172.t1 MTR_4g013255 22.845 464 209 11 41 373 39 484 1.02e-14 76.3
MS.gene98172.t1 MTR_1g054625 27.602 221 154 3 122 337 13 232 8.70e-17 79.7
MS.gene98172.t1 MTR_1g054625 28.616 318 184 12 59 364 17 303 1.60e-16 80.5
MS.gene98172.t1 MTR_1g054625 25.321 312 187 7 31 337 59 329 7.83e-16 78.6
MS.gene98172.t1 MTR_1g018790 23.990 421 256 14 19 385 61 471 1.01e-12 70.1
MS.gene98172.t1 MTR_3g088895 36.893 103 64 1 95 196 180 282 1.78e-12 68.6
MS.gene98172.t1 MTR_1g029500 36.893 103 64 1 95 196 167 269 4.13e-12 67.4
MS.gene98172.t1 MTR_4g114650 24.646 353 222 10 18 364 59 373 7.15e-12 67.4
MS.gene98172.t1 MTR_4g114650 25.210 357 215 12 18 364 55 369 7.80e-12 67.4
MS.gene98172.t1 MTR_4g114650 25.210 357 215 12 18 364 110 424 1.05e-11 67.0
MS.gene98172.t1 MTR_1g015450 23.799 437 227 18 9 364 173 584 2.07e-11 66.2
MS.gene98172.t1 MTR_8g076010 22.963 405 249 13 20 385 13 393 6.80e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene98172.t1 AT3G07550 59.021 388 153 3 8 390 1 387 1.14e-149 429
MS.gene98172.t1 AT3G07550 59.021 388 153 3 8 390 1 387 1.14e-149 429
MS.gene98172.t1 AT3G07550 54.639 388 143 4 8 390 1 360 2.62e-130 379
MS.gene98172.t1 AT5G23340 28.649 370 237 7 22 366 10 377 3.65e-34 131
MS.gene98172.t1 AT4G15475 28.297 417 218 12 22 368 11 416 4.27e-31 125
MS.gene98172.t1 AT4G15475 28.364 275 187 5 97 364 296 567 1.72e-22 100
MS.gene98172.t1 AT4G15475 27.698 278 170 6 95 368 218 468 2.52e-18 87.4
MS.gene98172.t1 AT4G15475 32.090 134 90 1 95 228 450 582 1.58e-13 72.8
MS.gene98172.t1 AT5G25350 26.431 367 237 7 17 371 53 398 9.58e-23 100
MS.gene98172.t1 AT2G25490 26.923 364 232 7 18 368 63 405 1.31e-22 100
MS.gene98172.t1 AT2G25490 27.459 244 145 9 108 345 374 591 1.16e-11 67.0
MS.gene98172.t1 AT5G27920 27.679 336 199 10 66 369 99 422 8.04e-19 89.0
MS.gene98172.t1 AT5G27920 26.062 353 179 7 78 373 201 528 4.25e-18 86.7
MS.gene98172.t1 AT5G27920 27.240 279 189 9 100 370 330 602 6.51e-17 83.2
MS.gene98172.t1 AT5G27920 28.261 230 139 7 97 325 405 609 2.29e-13 72.0
MS.gene98172.t1 AT3G58530 25.926 243 156 5 122 363 112 331 1.13e-17 84.0
MS.gene98172.t1 AT3G58530 29.487 156 104 3 87 242 155 304 7.27e-13 69.7
MS.gene98172.t1 AT1G21410 25.418 299 179 9 90 376 85 351 2.02e-16 80.5
MS.gene98172.t1 AT1G21410 27.128 188 132 3 77 262 125 309 1.18e-12 68.9
MS.gene98172.t1 AT1G21410 25.418 299 179 9 90 376 85 351 2.02e-16 80.5
MS.gene98172.t1 AT1G21410 27.128 188 132 3 77 262 125 309 1.18e-12 68.9
MS.gene98172.t1 AT5G01720 24.490 343 199 7 101 385 232 572 6.79e-16 80.1
MS.gene98172.t1 AT5G01720 24.364 275 160 5 122 371 151 402 7.95e-13 70.5
MS.gene98172.t1 AT1G77000 35.897 117 71 2 81 196 158 271 2.18e-13 71.2
MS.gene98172.t1 AT1G77000 23.390 295 153 7 107 375 103 350 5.16e-13 70.1
MS.gene98172.t1 AT1G77000 28.090 178 123 3 87 262 135 309 1.05e-12 69.3
MS.gene98172.t1 AT1G77000 35.897 117 71 2 81 196 158 271 2.18e-13 71.2
MS.gene98172.t1 AT1G77000 23.390 295 153 7 107 375 103 350 5.16e-13 70.1
MS.gene98172.t1 AT1G77000 28.090 178 123 3 87 262 135 309 1.05e-12 69.3
MS.gene98172.t1 AT1G77000 35.714 112 71 1 107 217 103 214 5.42e-13 68.9
MS.gene98172.t1 AT1G77000 35.714 112 71 1 107 217 103 214 5.42e-13 68.9
MS.gene98172.t1 AT1G47056 24.581 358 215 12 22 370 43 354 6.26e-11 64.3

Find 100 sgRNAs with CRISPR-Local

Find 103 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGTCCGACGGTTGAAATTT+TGG 0.184394 8.2:-69041046 None:intergenic
CAATTCCGACCACCCCTTCT+AGG 0.256053 8.2:-69041592 None:intergenic
CATGCAGTCTCTTCAAATTC+TGG 0.257571 8.2:-69041856 None:intergenic
TGCCTCAATCTTACTGATAA+TGG 0.310210 8.2:+69041887 MS.gene98172:CDS
ATCTACACATTCGGAAGTTT+AGG 0.320698 8.2:-69041715 None:intergenic
GGGCTATCCCTAGTTGCTTC+TGG 0.330852 8.2:+69041299 MS.gene98172:CDS
TGTCATGAGGTGAGTATATC+TGG 0.346053 8.2:+69041809 MS.gene98172:CDS
TTTACACCGTCCATATTCAT+AGG 0.354668 8.2:+69041132 MS.gene98172:CDS
TGCACGGAGCTCGATGATTC+AGG 0.355920 8.2:+69041200 MS.gene98172:CDS
CGTACTGATCGTGAATCATT+TGG 0.356173 8.2:+69040996 MS.gene98172:CDS
GCCTTAGCAACCTATGAATA+TGG 0.358247 8.2:-69041142 None:intergenic
GATGGAGGTAGCACCAAGTT+TGG 0.367641 8.2:-69040922 None:intergenic
CTCTACATGCACGAGAGATT+TGG 0.377470 8.2:-69041549 None:intergenic
TCTTGTAAACTTAGCCTAGA+AGG 0.380073 8.2:+69041578 MS.gene98172:CDS
GGAGATCCCCTGCGTGGAAT+AGG 0.381410 8.2:+69041671 MS.gene98172:CDS
ACAACCATTCAAGTACAAAA+TGG 0.391558 8.2:-69041945 None:intergenic
CCCTTCCTCTTTGTCTGCCA+AGG 0.401973 8.2:+69041100 MS.gene98172:CDS
TGTCTTAACATTACTGATGA+AGG 0.429447 8.2:+69041356 MS.gene98172:CDS
TCAACCAGTATCATCTGAAT+GGG 0.437196 8.2:-69042063 None:intergenic
GTCGGAATTGTTAGCGGTGG+CGG 0.438075 8.2:+69041605 MS.gene98172:CDS
CAGGGGCGATGTTTGCATAA+AGG 0.439933 8.2:+69042009 MS.gene98172:CDS
AAGAGCTTTCAACCCTTTGT+CGG 0.454218 8.2:-69041447 None:intergenic
TGCTTAAGTTGGTCACCATC+GGG 0.456966 8.2:+69041650 MS.gene98172:CDS
ATGGAAGATCTTTCCAAACT+TGG 0.457693 8.2:+69040909 MS.gene98172:CDS
TCTTCAGATGAGTCTTGAAA+AGG 0.458770 8.2:+69040881 None:intergenic
TAGATGTATCTTGCTTAAGT+TGG 0.458772 8.2:+69041639 MS.gene98172:CDS
TTGGCTTGACTTGCCGCCGA+TGG 0.461152 8.2:+69041015 MS.gene98172:CDS
TATCATCTGAATGGGGAGTA+AGG 0.461605 8.2:-69042055 None:intergenic
ATCAACCAGTATCATCTGAA+TGG 0.466552 8.2:-69042064 None:intergenic
TTCAAGTAGTGTACATCCCT+TGG 0.473496 8.2:-69041768 None:intergenic
TTGAATAACTCTAATGCTAA+AGG 0.480544 8.2:-69041980 None:intergenic
TGAACCGTAGCTTAGCAAAC+GGG 0.481477 8.2:-69041228 None:intergenic
TTGCTTAAGTTGGTCACCAT+CGG 0.483575 8.2:+69041649 MS.gene98172:CDS
ATAAGTGGCGTTGGATTCGA+AGG 0.491105 8.2:+69041521 MS.gene98172:CDS
TTGAACCGTAGCTTAGCAAA+CGG 0.494178 8.2:-69041229 None:intergenic
GATGTACACTACTTGAAGAA+TGG 0.498471 8.2:+69041774 MS.gene98172:CDS
ATAATAGTAAGGCAGTCATC+TGG 0.504519 8.2:-69040954 None:intergenic
TGTTTGAAAGTCACTAACTA+CGG 0.506597 8.2:+69041278 MS.gene98172:CDS
CTTGTAAACTTAGCCTAGAA+GGG 0.509036 8.2:+69041579 MS.gene98172:CDS
TCACACTGTGAGCGTATAAG+TGG 0.510402 8.2:+69041506 MS.gene98172:CDS
TTAGAGTCTTTATCTCTATG+TGG 0.511065 8.2:+69041176 MS.gene98172:CDS
CCTTCCTCTTTGTCTGCCAA+GGG 0.511975 8.2:+69041101 MS.gene98172:CDS
CAGAAACTGATCTACACATT+CGG 0.516875 8.2:-69041724 None:intergenic
TAGAGTTATTCAAGTCTCAC+AGG 0.520611 8.2:+69041990 MS.gene98172:CDS
TTCTATTATTGCAATAGCCA+AGG 0.528487 8.2:+69041751 MS.gene98172:CDS
GTTTGAAAGTCACTAACTAC+GGG 0.539400 8.2:+69041279 MS.gene98172:CDS
GCTCACAAATATCCGACAAA+GGG 0.542576 8.2:+69041435 MS.gene98172:CDS
AGGGACAACCAGAAGCAACT+AGG 0.542948 8.2:-69041307 None:intergenic
ATATTTGTGAGCAGTATGAC+AGG 0.553062 8.2:-69041424 None:intergenic
TCCATATTCATAGGTTGCTA+AGG 0.554256 8.2:+69041141 MS.gene98172:CDS
ATATCTGGATGGCAAGCAGT+GGG 0.554297 8.2:+69041824 MS.gene98172:CDS
ATACGTTAATAGCTTGAAGC+TGG 0.554829 8.2:-69041484 None:intergenic
TGTGAGCGTATAAGTGGCGT+TGG 0.556637 8.2:+69041512 MS.gene98172:CDS
AACCGTCTCGTAATGCCCGC+AGG 0.559683 8.2:-69041910 None:intergenic
TAGGCTAAGTTTACAAGACT+CGG 0.561965 8.2:-69041573 None:intergenic
TGACAACAATTAGTCTCTAT+CGG 0.563574 8.2:+69041333 MS.gene98172:CDS
GTCATCTGGTAAGTGCATGA+TGG 0.563773 8.2:-69040940 None:intergenic
TCTTACTGATAATGGCCTGC+GGG 0.566190 8.2:+69041895 MS.gene98172:CDS
GGGACAACCAGAAGCAACTA+GGG 0.569174 8.2:-69041306 None:intergenic
CCCTTGGCAGACAAAGAGGA+AGG 0.573268 8.2:-69041101 None:intergenic
GGCCATTATCAGTAAGATTG+AGG 0.577952 8.2:-69041889 None:intergenic
TCTATTATTGCAATAGCCAA+GGG 0.578035 8.2:+69041752 MS.gene98172:CDS
GAGTCTTGAAAAGGTTGACA+TGG 0.579264 8.2:+69040890 MS.gene98172:CDS
AGACTAATTGTTGTCAATGA+GGG 0.583295 8.2:-69041326 None:intergenic
AAGACCCTTGGCAGACAAAG+AGG 0.587642 8.2:-69041105 None:intergenic
AGGAAAATCCTATTCCACGC+AGG 0.588987 8.2:-69041679 None:intergenic
GAGACTAATTGTTGTCAATG+AGG 0.594035 8.2:-69041327 None:intergenic
CTAACCCGTTTGCTAAGCTA+CGG 0.594245 8.2:+69041224 MS.gene98172:CDS
GGGGTGGTCGGAATTGTTAG+CGG 0.594594 8.2:+69041599 MS.gene98172:CDS
TGCTCACAAATATCCGACAA+AGG 0.596634 8.2:+69041434 MS.gene98172:CDS
CAAATCTCTCGTGCATGTAG+AGG 0.596637 8.2:+69041550 MS.gene98172:CDS
TTTATCTCTATGTGGTTGCA+CGG 0.599367 8.2:+69041184 MS.gene98172:CDS
GGTGTAAACATCAAGACCCT+TGG 0.601872 8.2:-69041117 None:intergenic
ATCTTACTGATAATGGCCTG+CGG 0.605806 8.2:+69041894 MS.gene98172:CDS
GGAAAATCCTATTCCACGCA+GGG 0.607193 8.2:-69041678 None:intergenic
CTTAGCCTAGAAGGGGTGGT+CGG 0.618325 8.2:+69041587 MS.gene98172:CDS
TATATCTGGATGGCAAGCAG+TGG 0.618448 8.2:+69041823 MS.gene98172:CDS
CCACGCAGGGGATCTCCCGA+TGG 0.619884 8.2:-69041665 None:intergenic
ATATCCAAAATTTCAACCGT+CGG 0.624409 8.2:+69041042 MS.gene98172:CDS
AGAGTTATTCAAGTCTCACA+GGG 0.626131 8.2:+69041991 MS.gene98172:CDS
TTTGGATATGGAGCCATCGG+CGG 0.628152 8.2:-69041028 None:intergenic
TTTCAAAGATAAGCAAGCAG+TGG 0.631769 8.2:-69041393 None:intergenic
TGTTTGCATAAAGGAAGAAG+AGG 0.634712 8.2:+69042018 MS.gene98172:CDS
ATCTGGTAAGTGCATGATGG+AGG 0.637213 8.2:-69040937 None:intergenic
GGCCTGCGGGCATTACGAGA+CGG 0.641040 8.2:+69041908 MS.gene98172:CDS
GTGGTCGGAATTGTTAGCGG+TGG 0.643552 8.2:+69041602 MS.gene98172:CDS
TAGCAACCTATGAATATGGA+CGG 0.643940 8.2:-69041138 None:intergenic
TAAACTTAGCCTAGAAGGGG+TGG 0.646086 8.2:+69041583 MS.gene98172:CDS
TTGTAAACTTAGCCTAGAAG+GGG 0.648246 8.2:+69041580 MS.gene98172:CDS
CCTTGGCAGACAAAGAGGAA+GGG 0.661145 8.2:-69041100 None:intergenic
GAACTTAGCATTATGTCATG+AGG 0.663036 8.2:+69041796 MS.gene98172:CDS
ACTCAAATTGCAGAGTCCGA+CGG 0.672603 8.2:-69041058 None:intergenic
CCATCGGGAGATCCCCTGCG+TGG 0.678463 8.2:+69041665 MS.gene98172:CDS
CAACCAGTATCATCTGAATG+GGG 0.689748 8.2:-69042062 None:intergenic
ATGAGGTGAGTATATCTGGA+TGG 0.692395 8.2:+69041813 MS.gene98172:CDS
TAAGTGGCGTTGGATTCGAA+GGG 0.707986 8.2:+69041522 MS.gene98172:CDS
TATCTGGATGGCAAGCAGTG+GGG 0.726038 8.2:+69041825 MS.gene98172:CDS
GAAAATCCTATTCCACGCAG+GGG 0.737306 8.2:-69041677 None:intergenic
GGTTGAAAGCTCTTACTCAG+CGG 0.742567 8.2:+69041456 MS.gene98172:CDS
GAGTTATTCAAGTCTCACAG+GGG 0.770901 8.2:+69041992 MS.gene98172:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTACAAAAACTTAATC+TGG + chr8.2:69041250-69041269 MS.gene98172:CDS 15.0%
!! AACCATGAAAAATAATAGTA+AGG - chr8.2:69040968-69040987 None:intergenic 20.0%
! TTGAATAACTCTAATGCTAA+AGG - chr8.2:69041983-69042002 None:intergenic 25.0%
!!! TGCCTTACTATTATTTTTCA+TGG + chr8.2:69040963-69040982 MS.gene98172:CDS 25.0%
ACAACCATTCAAGTACAAAA+TGG - chr8.2:69041948-69041967 None:intergenic 30.0%
AGACTAATTGTTGTCAATGA+GGG - chr8.2:69041329-69041348 None:intergenic 30.0%
ATATCCAAAATTTCAACCGT+CGG + chr8.2:69041042-69041061 MS.gene98172:CDS 30.0%
TAGATGTATCTTGCTTAAGT+TGG + chr8.2:69041639-69041658 MS.gene98172:CDS 30.0%
TCTATTATTGCAATAGCCAA+GGG + chr8.2:69041752-69041771 MS.gene98172:CDS 30.0%
TGTCTTAACATTACTGATGA+AGG + chr8.2:69041356-69041375 MS.gene98172:CDS 30.0%
TGTTTGAAAGTCACTAACTA+CGG + chr8.2:69041278-69041297 MS.gene98172:CDS 30.0%
TTAGAGTCTTTATCTCTATG+TGG + chr8.2:69041176-69041195 MS.gene98172:CDS 30.0%
TTCTATTATTGCAATAGCCA+AGG + chr8.2:69041751-69041770 MS.gene98172:CDS 30.0%
! TGACAACAATTAGTCTCTAT+CGG + chr8.2:69041333-69041352 MS.gene98172:CDS 30.0%
AGAGTTATTCAAGTCTCACA+GGG + chr8.2:69041991-69042010 MS.gene98172:CDS 35.0%
ATAATAGTAAGGCAGTCATC+TGG - chr8.2:69040957-69040976 None:intergenic 35.0%
ATACGTTAATAGCTTGAAGC+TGG - chr8.2:69041487-69041506 None:intergenic 35.0%
ATATTTGTGAGCAGTATGAC+AGG - chr8.2:69041427-69041446 None:intergenic 35.0%
ATCTACACATTCGGAAGTTT+AGG - chr8.2:69041718-69041737 None:intergenic 35.0%
ATGGAAGATCTTTCCAAACT+TGG + chr8.2:69040909-69040928 MS.gene98172:CDS 35.0%
CAGAAACTGATCTACACATT+CGG - chr8.2:69041727-69041746 None:intergenic 35.0%
CTTGTAAACTTAGCCTAGAA+GGG + chr8.2:69041579-69041598 MS.gene98172:CDS 35.0%
GAACTTAGCATTATGTCATG+AGG + chr8.2:69041796-69041815 MS.gene98172:CDS 35.0%
GAGACTAATTGTTGTCAATG+AGG - chr8.2:69041330-69041349 None:intergenic 35.0%
GATGTACACTACTTGAAGAA+TGG + chr8.2:69041774-69041793 MS.gene98172:CDS 35.0%
GTTTGAAAGTCACTAACTAC+GGG + chr8.2:69041279-69041298 MS.gene98172:CDS 35.0%
TAGAGTTATTCAAGTCTCAC+AGG + chr8.2:69041990-69042009 MS.gene98172:CDS 35.0%
TAGCAACCTATGAATATGGA+CGG - chr8.2:69041141-69041160 None:intergenic 35.0%
TAGGCTAAGTTTACAAGACT+CGG - chr8.2:69041576-69041595 None:intergenic 35.0%
TCCATATTCATAGGTTGCTA+AGG + chr8.2:69041141-69041160 MS.gene98172:CDS 35.0%
TCTTGTAAACTTAGCCTAGA+AGG + chr8.2:69041578-69041597 MS.gene98172:CDS 35.0%
TGCCTCAATCTTACTGATAA+TGG + chr8.2:69041887-69041906 MS.gene98172:CDS 35.0%
TGTTTGCATAAAGGAAGAAG+AGG + chr8.2:69042018-69042037 MS.gene98172:CDS 35.0%
TTGTAAACTTAGCCTAGAAG+GGG + chr8.2:69041580-69041599 MS.gene98172:CDS 35.0%
TTTACACCGTCCATATTCAT+AGG + chr8.2:69041132-69041151 MS.gene98172:CDS 35.0%
TTTATCTCTATGTGGTTGCA+CGG + chr8.2:69041184-69041203 MS.gene98172:CDS 35.0%
TTTCAAAGATAAGCAAGCAG+TGG - chr8.2:69041396-69041415 None:intergenic 35.0%
! AATTTTGGATATGGAGCCAT+CGG - chr8.2:69041034-69041053 None:intergenic 35.0%
! CTCTCCATTTTGTACTTGAA+TGG + chr8.2:69041941-69041960 MS.gene98172:CDS 35.0%
! GACGGTTGAAATTTTGGATA+TGG - chr8.2:69041043-69041062 None:intergenic 35.0%
!! TTCGGAAGTTTAGGATTTTG+AGG - chr8.2:69041709-69041728 None:intergenic 35.0%
AAGAGCTTTCAACCCTTTGT+CGG - chr8.2:69041450-69041469 None:intergenic 40.0%
ATGAGGTGAGTATATCTGGA+TGG + chr8.2:69041813-69041832 MS.gene98172:CDS 40.0%
CATGCAGTCTCTTCAAATTC+TGG - chr8.2:69041859-69041878 None:intergenic 40.0%
GAGTCTTGAAAAGGTTGACA+TGG + chr8.2:69040890-69040909 MS.gene98172:CDS 40.0%
GAGTTATTCAAGTCTCACAG+GGG + chr8.2:69041992-69042011 MS.gene98172:CDS 40.0%
GCCTTAGCAACCTATGAATA+TGG - chr8.2:69041145-69041164 None:intergenic 40.0%
GCTCACAAATATCCGACAAA+GGG + chr8.2:69041435-69041454 MS.gene98172:CDS 40.0%
GGCCATTATCAGTAAGATTG+AGG - chr8.2:69041892-69041911 None:intergenic 40.0%
TGCTCACAAATATCCGACAA+AGG + chr8.2:69041434-69041453 MS.gene98172:CDS 40.0%
TGTCATGAGGTGAGTATATC+TGG + chr8.2:69041809-69041828 MS.gene98172:CDS 40.0%
TTCAAGTAGTGTACATCCCT+TGG - chr8.2:69041771-69041790 None:intergenic 40.0%
TTGAACCGTAGCTTAGCAAA+CGG - chr8.2:69041232-69041251 None:intergenic 40.0%
! CGTACTGATCGTGAATCATT+TGG + chr8.2:69040996-69041015 MS.gene98172:CDS 40.0%
!! ATCTTACTGATAATGGCCTG+CGG + chr8.2:69041894-69041913 MS.gene98172:CDS 40.0%
!! TTGCTTAAGTTGGTCACCAT+CGG + chr8.2:69041649-69041668 MS.gene98172:CDS 40.0%
!!! GTTTAGGATTTTGAGGCTTG+AGG - chr8.2:69041702-69041721 None:intergenic 40.0%
ACTCAAATTGCAGAGTCCGA+CGG - chr8.2:69041061-69041080 None:intergenic 45.0%
AGGAAAATCCTATTCCACGC+AGG - chr8.2:69041682-69041701 None:intergenic 45.0%
ATATCTGGATGGCAAGCAGT+GGG + chr8.2:69041824-69041843 MS.gene98172:CDS 45.0%
ATCTGGTAAGTGCATGATGG+AGG - chr8.2:69040940-69040959 None:intergenic 45.0%
CAAATCTCTCGTGCATGTAG+AGG + chr8.2:69041550-69041569 MS.gene98172:CDS 45.0%
CTCTACATGCACGAGAGATT+TGG - chr8.2:69041552-69041571 None:intergenic 45.0%
GAAAATCCTATTCCACGCAG+GGG - chr8.2:69041680-69041699 None:intergenic 45.0%
GGAAAATCCTATTCCACGCA+GGG - chr8.2:69041681-69041700 None:intergenic 45.0%
GGTGTAAACATCAAGACCCT+TGG - chr8.2:69041120-69041139 None:intergenic 45.0%
GGTTGAAAGCTCTTACTCAG+CGG + chr8.2:69041456-69041475 MS.gene98172:CDS 45.0%
GTCATCTGGTAAGTGCATGA+TGG - chr8.2:69040943-69040962 None:intergenic 45.0%
TAAACTTAGCCTAGAAGGGG+TGG + chr8.2:69041583-69041602 MS.gene98172:CDS 45.0%
TATATCTGGATGGCAAGCAG+TGG + chr8.2:69041823-69041842 MS.gene98172:CDS 45.0%
TCACACTGTGAGCGTATAAG+TGG + chr8.2:69041506-69041525 MS.gene98172:CDS 45.0%
TGAACCGTAGCTTAGCAAAC+GGG - chr8.2:69041231-69041250 None:intergenic 45.0%
! ATAAGTGGCGTTGGATTCGA+AGG + chr8.2:69041521-69041540 MS.gene98172:CDS 45.0%
! CTAACCCGTTTGCTAAGCTA+CGG + chr8.2:69041224-69041243 MS.gene98172:CDS 45.0%
! GAGTCCGACGGTTGAAATTT+TGG - chr8.2:69041049-69041068 None:intergenic 45.0%
! TAAGTGGCGTTGGATTCGAA+GGG + chr8.2:69041522-69041541 MS.gene98172:CDS 45.0%
!! TCTTACTGATAATGGCCTGC+GGG + chr8.2:69041895-69041914 MS.gene98172:CDS 45.0%
!! TGCTTAAGTTGGTCACCATC+GGG + chr8.2:69041650-69041669 MS.gene98172:CDS 45.0%
AAGACCCTTGGCAGACAAAG+AGG - chr8.2:69041108-69041127 None:intergenic 50.0%
AGGGACAACCAGAAGCAACT+AGG - chr8.2:69041310-69041329 None:intergenic 50.0%
CAGGGGCGATGTTTGCATAA+AGG + chr8.2:69042009-69042028 MS.gene98172:CDS 50.0%
CCTTCCTCTTTGTCTGCCAA+GGG + chr8.2:69041101-69041120 MS.gene98172:CDS 50.0%
CCTTGGCAGACAAAGAGGAA+GGG - chr8.2:69041103-69041122 None:intergenic 50.0%
GATGGAGGTAGCACCAAGTT+TGG - chr8.2:69040925-69040944 None:intergenic 50.0%
GGGACAACCAGAAGCAACTA+GGG - chr8.2:69041309-69041328 None:intergenic 50.0%
TATCTGGATGGCAAGCAGTG+GGG + chr8.2:69041825-69041844 MS.gene98172:CDS 50.0%
TGTGAGCGTATAAGTGGCGT+TGG + chr8.2:69041512-69041531 MS.gene98172:CDS 50.0%
TTTGGATATGGAGCCATCGG+CGG - chr8.2:69041031-69041050 None:intergenic 50.0%
CAATTCCGACCACCCCTTCT+AGG - chr8.2:69041595-69041614 None:intergenic 55.0%
CCCTTCCTCTTTGTCTGCCA+AGG + chr8.2:69041100-69041119 MS.gene98172:CDS 55.0%
CCCTTGGCAGACAAAGAGGA+AGG - chr8.2:69041104-69041123 None:intergenic 55.0%
CTTAGCCTAGAAGGGGTGGT+CGG + chr8.2:69041587-69041606 MS.gene98172:CDS 55.0%
GGGCTATCCCTAGTTGCTTC+TGG + chr8.2:69041299-69041318 MS.gene98172:CDS 55.0%
GGGGTGGTCGGAATTGTTAG+CGG + chr8.2:69041599-69041618 MS.gene98172:CDS 55.0%
GTCGGAATTGTTAGCGGTGG+CGG + chr8.2:69041605-69041624 MS.gene98172:CDS 55.0%
GTGGTCGGAATTGTTAGCGG+TGG + chr8.2:69041602-69041621 MS.gene98172:CDS 55.0%
TGCACGGAGCTCGATGATTC+AGG + chr8.2:69041200-69041219 MS.gene98172:CDS 55.0%
AACCGTCTCGTAATGCCCGC+AGG - chr8.2:69041913-69041932 None:intergenic 60.0%
GGAGATCCCCTGCGTGGAAT+AGG + chr8.2:69041671-69041690 MS.gene98172:CDS 60.0%
!! TTGGCTTGACTTGCCGCCGA+TGG + chr8.2:69041015-69041034 MS.gene98172:CDS 60.0%
GGCCTGCGGGCATTACGAGA+CGG + chr8.2:69041908-69041927 MS.gene98172:CDS 65.0%
CCACGCAGGGGATCTCCCGA+TGG - chr8.2:69041668-69041687 None:intergenic 70.0%
CCATCGGGAGATCCCCTGCG+TGG + chr8.2:69041665-69041684 MS.gene98172:CDS 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 69040888 69042075 69040888 ID=MS.gene98172
chr8.2 mRNA 69040888 69042075 69040888 ID=MS.gene98172.t1;Parent=MS.gene98172
chr8.2 exon 69040888 69042075 69040888 ID=MS.gene98172.t1.exon1;Parent=MS.gene98172.t1
chr8.2 CDS 69040888 69042075 69040888 ID=cds.MS.gene98172.t1;Parent=MS.gene98172.t1
Gene Sequence

>MS.gene98172

ATGAGTCTTGAAAAGGTTGACATGGAAGATCTTTCCAAACTTGGTGCTACCTCCATCATGCACTTACCAGATGACTGCCTTACTATTATTTTTCATGGTTTAGATTGTCGTACTGATCGTGAATCATTTGGCTTGACTTGCCGCCGATGGCTCCATATCCAAAATTTCAACCGTCGGACTCTGCAATTTGAGTGTTCATTTAGTATATTAAACCCTTCCTCTTTGTCTGCCAAGGGTCTTGATGTTTACACCGTCCATATTCATAGGTTGCTAAGGCGCTTTCAACATTTAGAGTCTTTATCTCTATGTGGTTGCACGGAGCTCGATGATTCAGGACTAACCCGTTTGCTAAGCTACGGTTCAAATTTACAAAAACTTAATCTGGATTGTTGTTTGAAAGTCACTAACTACGGGCTATCCCTAGTTGCTTCTGGTTGTCCCTCATTGACAACAATTAGTCTCTATCGGTGTCTTAACATTACTGATGAAGGATTAGAGACTTTAACCACTGCTTGCTTATCTTTGAAATGCATAAACCTGTCATACTGCTCACAAATATCCGACAAAGGGTTGAAAGCTCTTACTCAGCGGTGTCGCCAGCTTCAAGCTATTAACGTATCACACTGTGAGCGTATAAGTGGCGTTGGATTCGAAGGGTGTTCCAAATCTCTCGTGCATGTAGAGGCCGAGTCTTGTAAACTTAGCCTAGAAGGGGTGGTCGGAATTGTTAGCGGTGGCGGAATAGAGTATCTAGATGTATCTTGCTTAAGTTGGTCACCATCGGGAGATCCCCTGCGTGGAATAGGATTTTCCTCAAGCCTCAAAATCCTAAACTTCCGAATGTGTAGATCAGTTTCTGATGCTTCTATTATTGCAATAGCCAAGGGATGTACACTACTTGAAGAATGGAACTTAGCATTATGTCATGAGGTGAGTATATCTGGATGGCAAGCAGTGGGGCTATATTGCCAGAATTTGAAGAGACTGCATGTGAATAGATGCCTCAATCTTACTGATAATGGCCTGCGGGCATTACGAGACGGTTGCAAAAGTCTCTCCATTTTGTACTTGAATGGTTGTGCTCGAGTGACGCCTTTAGCATTAGAGTTATTCAAGTCTCACAGGGGCGATGTTTGCATAAAGGAAGAAGAGGTAATGTGCATAAAGCCTTACTCCCCATTCAGATGA
Protein sequence

>MS.gene98172.t1

MSLEKVDMEDLSKLGATSIMHLPDDCLTIIFHGLDCRTDRESFGLTCRRWLHIQNFNRRTLQFECSFSILNPSSLSAKGLDVYTVHIHRLLRRFQHLESLSLCGCTELDDSGLTRLLSYGSNLQKLNLDCCLKVTNYGLSLVASGCPSLTTISLYRCLNITDEGLETLTTACLSLKCINLSYCSQISDKGLKALTQRCRQLQAINVSHCERISGVGFEGCSKSLVHVEAESCKLSLEGVVGIVSGGGIEYLDVSCLSWSPSGDPLRGIGFSSSLKILNFRMCRSVSDASIIAIAKGCTLLEEWNLALCHEVSISGWQAVGLYCQNLKRLHVNRCLNLTDNGLRALRDGCKSLSILYLNGCARVTPLALELFKSHRGDVCIKEEEVMCIKPYSPFR